Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 108 of 109
Found at i:22515070 original size:22 final size:22
Alignment explanation
Indices: 22515030--22515139 Score: 62
Period size: 22 Copynumber: 4.9 Consensus size: 22
22515020 ATGTTTAACA
***
22515030 ATTAATTTATCAGTTATTTACT
1 ATTAATTTATCAAAAATTTACT
*
22515052 ATTAATTTATCAAAAATTTGCT
1 ATTAATTTATCAAAAATTTACT
* * *
22515074 ACTAAATTATCAATGATATTTACT
1 ATTAATTTATCAA--AAATTTACT
* ** *
22515098 -TCTAATTTATGAATGATTTACA
1 AT-TAATTTATCAAAAATTTACT
*
22515120 ATTAAGTTAT-AAAATATTTA
1 ATTAATTTATCAAAA-ATTTA
22515140 TCATTAAGTT
Statistics
Matches: 66, Mismatches: 17, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
21 2 0.03
22 47 0.71
23 1 0.02
24 16 0.24
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.46
Consensus pattern (22 bp):
ATTAATTTATCAAAAATTTACT
Found at i:22515160 original size:22 final size:22
Alignment explanation
Indices: 22515104--22515216 Score: 72
Period size: 22 Copynumber: 5.2 Consensus size: 22
22515094 TACTTCTAAT
*
22515104 TTATGAATGATTTA-CAATTAAG
1 TTATGGATGATTTATC-ATTAAG
**
22515126 TTATAAAAT-ATTTATCATTAAG
1 TTAT-GGATGATTTATCATTAAG
* *
22515148 TTATGGATGATTTCT-ATTAAA
1 TTATGGATGATTTATCATTAAG
* * *
22515169 TTGTTGG-TGATTTACCACTAAG
1 TT-ATGGATGATTTATCATTAAG
* * *
22515191 TTATTGATGATTTATTATAAAG
1 TTATGGATGATTTATCATTAAG
22515213 TTAT
1 TTAT
22515217 AATTAATTTA
Statistics
Matches: 69, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
21 17 0.25
22 48 0.70
23 4 0.06
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.46
Consensus pattern (22 bp):
TTATGGATGATTTATCATTAAG
Found at i:22515384 original size:22 final size:22
Alignment explanation
Indices: 22515277--22515391 Score: 74
Period size: 22 Copynumber: 5.4 Consensus size: 22
22515267 TTAACTAATA
*
22515277 TACTACTAAATTATCATTGATT
1 TACTATTAAATTATCATTGATT
* * * *
22515299 TACAATTAAATTATTAGTAATT
1 TACTATTAAATTATCATTGATT
** * *
22515321 TACTATTATGTTATTAGTGATT
1 TACTATTAAATTATCATTGATT
* ** * *
22515343 TATTGCT-AAGT-T-ATTAATT
1 TACTATTAAATTATCATTGATT
22515362 TACTATTAAATTATCATTGATT
1 TACTATTAAATTATCATTGATT
*
22515384 TATTATTA
1 TACTATTA
22515392 CATTTTTTTA
Statistics
Matches: 67, Mismatches: 23, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
19 9 0.13
20 4 0.06
21 2 0.03
22 52 0.78
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (22 bp):
TACTATTAAATTATCATTGATT
Found at i:22515639 original size:43 final size:43
Alignment explanation
Indices: 22515542--22515639 Score: 97
Period size: 43 Copynumber: 2.3 Consensus size: 43
22515532 CATCATTTAT
* * * *
22515542 TAATAAGTTATTACTGATTAACTATTATGTTATAAATTATTTAC
1 TAATAAATTA-TACTGATTAACTATTAAGTTATAAATGATTAAC
* * * * * *
22515586 TACTAGATTATACTGATTTACTTTTAAGTTTTCAATGATTAAC
1 TAATAAATTATACTGATTAACTATTAAGTTATAAATGATTAAC
22515629 TAATAAATTAT
1 TAATAAATTAT
22515640 CAATTATTTA
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
43 35 0.83
44 7 0.17
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (43 bp):
TAATAAATTATACTGATTAACTATTAAGTTATAAATGATTAAC
Found at i:22515642 original size:22 final size:22
Alignment explanation
Indices: 22515571--22515674 Score: 75
Period size: 22 Copynumber: 4.8 Consensus size: 22
22515561 AACTATTATG
* * * *
22515571 TTATAAATTATTTACTACTAGA
1 TTATCAATGATTTACTAATAAA
* ** *
22515593 TTAT-ACTGATTTACTTTTAAG
1 TTATCAATGATTTACTAATAAA
* *
22515614 TTTTCAATGATTAACTAATAAA
1 TTATCAATGATTTACTAATAAA
* * *
22515636 TTATCAATTATTTACTACTAAT
1 TTATCAATGATTTACTAATAAA
*
22515658 TTATCATTGATTTACTA
1 TTATCAATGATTTACTA
22515675 TCAATTAATT
Statistics
Matches: 62, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
21 14 0.23
22 48 0.77
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATCAATGATTTACTAATAAA
Found at i:22515764 original size:22 final size:22
Alignment explanation
Indices: 22515698--22515969 Score: 97
Period size: 22 Copynumber: 12.4 Consensus size: 22
22515688 TTAAACTAAA
* *
22515698 ATTGATTTACTT-TTAAATTATT
1 ATTGATTTA-TTATTAAGTTATC
* * * *
22515720 ATTAACTTACTATTAAATTATC
1 ATTGATTTATTATTAAGTTATC
*
22515742 ATTGATTTATTACTAAGTTATC
1 ATTGATTTATTATTAAGTTATC
* * * * *
22515764 AATAATTAACTATTAAATTATC
1 ATTGATTTATTATTAAGTTATC
* * *
22515786 ATTTATTTTTTGTTAAGTTATC
1 ATTGATTTATTATTAAGTTATC
* * *
22515808 TTTGATTTAGTATTATA-TTATT
1 ATTGATTTATTATTA-AGTTATC
** ** *
22515830 ATACATTTACAATTATA-TTATA
1 ATTGATTTATTATTA-AGTTATC
* * * *
22515852 ATTAATTTACTATTAAGATATT
1 ATTGATTTATTATTAAGTTATC
* * *
22515874 A-TCATATATTATTATA-TTATT
1 ATTGATTTATTATTA-AGTTATC
* ** ** *
22515895 ACTGATTTGCTAAAAAGTTATTA
1 ATTGATTTATTATTAAGTTA-TC
* *
22515918 ATT-ATTTATTACTAAATTATC
1 ATTGATTTATTATTAAGTTATC
*
22515939 ATTCATTTATTATTAAGTTATC
1 ATTGATTTATTATTAAGTTATC
*
22515961 ATTAATTTA
1 ATTGATTTA
22515970 ATACTAAATT
Statistics
Matches: 182, Mismatches: 60, Indels: 16
0.71 0.23 0.06
Matches are distributed among these distances:
21 22 0.12
22 156 0.86
23 4 0.02
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (22 bp):
ATTGATTTATTATTAAGTTATC
Found at i:22515868 original size:66 final size:65
Alignment explanation
Indices: 22515710--22515895 Score: 160
Period size: 66 Copynumber: 2.8 Consensus size: 65
22515700 TGATTTACTT
* * * * * *
22515710 TTAAATTATTATTAACTTACTATTAAATTATCATTGATTTATTACTA-AGTTATCAATAATTAAC
1 TTAAATTATAATTAATTTACTATTAAGTTATCTTTGATTTATTATTATA-TTAT-TATAATTAAC
*
22515774 TA
64 AA
* * ** * * *
22515776 TTAAATTATCATTTATTTTTTGTTAAGTTATCTTTGATTTAGTATTATATTATTATACATTTACA
1 TTAAATTATAATTAATTTACTATTAAGTTATCTTTGATTTATTATTATATTATTATA-ATTAACA
22515841 A
65 A
* * * * *
22515842 TTATATTATAATTAATTTACTATTAAGATAT-TATCATATATTATTATATTATTA
1 TTAAATTATAATTAATTTACTATTAAGTTATCTTTGATTTATTATTATATTATTA
22515896 CTGATTTGCT
Statistics
Matches: 94, Mismatches: 24, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
65 22 0.23
66 71 0.76
67 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (65 bp):
TTAAATTATAATTAATTTACTATTAAGTTATCTTTGATTTATTATTATATTATTATAATTAACAA
Found at i:22515981 original size:22 final size:22
Alignment explanation
Indices: 22515921--22515982 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
22515911 GTTATTAATT
*
22515921 ATTTATTACTAAATTATCATTC
1 ATTTATTACTAAATTATCATTA
* *
22515943 ATTTATTATTAAGTTATCATTA
1 ATTTATTACTAAATTATCATTA
*
22515965 ATTTAATACTAAATTATC
1 ATTTATTACTAAATTATC
22515983 TATGATTATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTTATTACTAAATTATCATTA
Found at i:22516376 original size:13 final size:14
Alignment explanation
Indices: 22516358--22516386 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22516348 GCCTGTTTGC
22516358 ATTTTTATTT-TTT
1 ATTTTTATTTATTT
22516371 ATTTTTATTTATTT
1 ATTTTTATTTATTT
22516385 AT
1 AT
22516387 CTATCATTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTTTATTTATTT
Found at i:22516429 original size:26 final size:28
Alignment explanation
Indices: 22516399--22516457 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
22516389 ATCATTACTA
22516399 TTATTACTTA-TTAAT-ATATAAATTTT
1 TTATTACTTATTTAATAATATAAATTTT
* * *
22516425 TTATTATTTATTTATTAATATATATTTT
1 TTATTACTTATTTAATAATATAAATTTT
22516453 TTATT
1 TTATT
22516458 TTATTATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.32
27 4 0.14
28 15 0.54
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (28 bp):
TTATTACTTATTTAATAATATAAATTTT
Found at i:22516442 original size:30 final size:28
Alignment explanation
Indices: 22516363--22516485 Score: 98
Period size: 27 Copynumber: 4.5 Consensus size: 28
22516353 TTTGCATTTT
* *
22516363 TATTTTTTATT-TTTATTTATTTATCTA
1 TATTTTTTATTATTTATTTATTAATATA
** *
22516390 TCA-TTACTATTA-TTACTTATTAATATA
1 T-ATTTTTTATTATTTATTTATTAATATA
22516417 TAAATTTTTTATTATTTATTTATTAATATA
1 T--ATTTTTTATTATTTATTTATTAATATA
*
22516447 TATTTTTTA-T-TTTA-TTATTATTAT-
1 TATTTTTTATTATTTATTTATTAATATA
*
22516471 TATTATTTATCTATT
1 TATTTTTTAT-TATT
22516486 AACATATATT
Statistics
Matches: 77, Mismatches: 11, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
24 8 0.10
25 9 0.12
26 5 0.06
27 23 0.30
28 10 0.13
29 7 0.09
30 15 0.19
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (28 bp):
TATTTTTTATTATTTATTTATTAATATA
Found at i:22516455 original size:21 final size:21
Alignment explanation
Indices: 22516426--22516577 Score: 109
Period size: 23 Copynumber: 7.1 Consensus size: 21
22516416 ATAAATTTTT
*
22516426 TATTATTTATTTATTAATATA
1 TATTTTTTATTTATTAATATA
*
22516447 TATTTTTTATTTTATTATTATTA
1 TATTTTTTA-TTTATTAATA-TA
* * *
22516470 TTATTATTTATCTATTAACATA
1 -TATTTTTTATTTATTAATATA
*
22516492 TATTATTTTTATCTATTAATATA
1 TA-T-TTTTTATTTATTAATATA
*
22516515 TATATGTTTTA-TTATTATTAT-
1 TAT-T-TTTTATTTATTAATATA
*
22516536 TATTTATCTATTTA-T-ATAT-
1 TATTT-TTTATTTATTAATATA
*
22516555 TA-TTTTTATCTATTAATATA
1 TATTTTTTATTTATTAATATA
22516575 TAT
1 TAT
22516578 ATATGTGTTT
Statistics
Matches: 105, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
17 6 0.06
18 3 0.03
19 10 0.10
20 7 0.07
21 16 0.15
22 23 0.22
23 32 0.30
24 8 0.08
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (21 bp):
TATTTTTTATTTATTAATATA
Found at i:22516466 original size:3 final size:3
Alignment explanation
Indices: 22516369--22516569 Score: 74
Period size: 3 Copynumber: 63.0 Consensus size: 3
22516359 TTTTTATTTT
* * * *
22516369 TTA TTT TTA TTTA TTTA TCTA TCA TTA CTA TTA TTA CTTA TTA ATA -TA
1 TTA TTA TTA -TTA -TTA T-TA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* *
22516417 TAAA TT- TT- TTA TTA TTTA TTTA TTA ATA TATA TT- TT- TTA TT- TTA
1 T-TA TTA TTA TTA TTA -TTA -TTA TTA TTA T-TA TTA TTA TTA TTA TTA
** *
22516461 TTA TTA TTA TTA TTA TTTA TCTA TTA ACA TATA TTA TTT TTA TCTA TTA
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA T-TA TTA TTA TTA T-TA TTA
* *
22516510 ATA -TA TATA TGTT TTA TTA TTA TTA TTA TTTA TCTA TTTA TATA TTA
1 TTA TTA T-TA T-TA TTA TTA TTA TTA TTA -TTA T-TA -TTA T-TA TTA
*
22516557 TTT TTA TCTA TTA
1 TTA TTA T-TA TTA
22516570 ATATATATAT
Statistics
Matches: 154, Mismatches: 23, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
2 14 0.09
3 85 0.55
4 54 0.35
5 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:22516525 original size:98 final size:89
Alignment explanation
Indices: 22516359--22516537 Score: 216
Period size: 98 Copynumber: 1.9 Consensus size: 89
22516349 CCTGTTTGCA
* *
22516359 TTTTTATTTTTTATTTTTATTTATTTATCTATCATTACTATTATTACTTATTAATATATAAATTT
1 TTTTTATTTTTTATTATTATTTATTTATCTATCATTACTATTATTACTTATTAATATATAAATGT
22516424 TTTATTATTTATTTATTAATATATAT
66 TTTATTA-TTA-TTATTAATATATAT
* *
22516450 TTTTTATTTTATTATTATTATTATTATTTATCTATTAACATATATTATTTTTA-TCTATTAATAT
1 TTTTTATTTT-TTATTATTA-T-TTATTTATCTA-T--CAT-TACTATTATTACT-TATTAATAT
*
22516514 ATATATGTTTTATTATTATTATTA
58 ATAAATGTTTTATTATTATTATTA
22516538 TTTATCTATT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
91 10 0.13
92 8 0.11
93 1 0.01
94 11 0.15
95 1 0.01
96 6 0.08
97 7 0.09
98 31 0.41
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (89 bp):
TTTTTATTTTTTATTATTATTTATTTATCTATCATTACTATTATTACTTATTAATATATAAATGT
TTTATTATTATTATTAATATATAT
Found at i:22516597 original size:58 final size:62
Alignment explanation
Indices: 22516461--22516638 Score: 269
Period size: 62 Copynumber: 2.9 Consensus size: 62
22516451 TTTTATTTTA
*
22516461 TTATTATTATTATTATTTATCTATTAACATATATTATTTTTATCTATT-A-ATATATATATGTT
1 TTATTATTATTATTATTTATCTATT--CATATATTATTTTTATCTATTAATATATATATATGTG
*
22516523 TTATTATTATTATTATTTATCTATTTATATATTATTTTTATCTATTAATATATATATATGTG
1 TTATTATTATTATTATTTATCTATTCATATATTATTTTTATCTATTAATATATATATATGTG
22516585 TT-TT-TT-TT-TTATTTATCTATTCATATATTATTATTTATCTATTAATATATATAT
1 TTATTATTATTATTATTTATCTATTCATATATTATT-TTTATCTATTAATATATATAT
22516639 TTTATTTTTA
Statistics
Matches: 110, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
58 23 0.21
59 23 0.21
60 22 0.20
61 3 0.03
62 39 0.35
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (62 bp):
TTATTATTATTATTATTTATCTATTCATATATTATTTTTATCTATTAATATATATATATGTG
Found at i:22517519 original size:6 final size:6
Alignment explanation
Indices: 22517499--22517566 Score: 61
Period size: 6 Copynumber: 11.2 Consensus size: 6
22517489 AATTATTTAG
*
22517499 TATTTCT TA-TTT TATTTT TATTTTCTT TATTTT TATCTT TATTTT TATTTT
1 TATTT-T TATTTT TATTTT TA--TT-TT TATTTT TATTTT TATTTT TATTTT
*
22517550 TA-TCT TA-TTT TATTTT T
1 TATTTT TATTTT TATTTT T
22517567 TGATTTTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
5 11 0.21
6 31 0.60
7 4 0.08
8 2 0.04
9 4 0.08
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:22517539 original size:12 final size:11
Alignment explanation
Indices: 22517499--22517565 Score: 66
Period size: 10 Copynumber: 6.1 Consensus size: 11
22517489 AATTATTTAG
22517499 TATTTCTTATTT
1 TATTT-TTATTT
22517511 TATTTTTATTT
1 TATTTTTATTT
* *
22517522 TCTTTAT-TTT
1 TATTTTTATTT
*
22517532 TATCTTTATTTT
1 TATTTTTA-TTT
*
22517544 TATTTTTATCT
1 TATTTTTATTT
22517555 TA-TTTTATTT
1 TATTTTTATTT
22517565 T
1 T
22517566 TTGATTTTCT
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
10 15 0.33
11 15 0.33
12 15 0.33
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:22517567 original size:18 final size:18
Alignment explanation
Indices: 22517508--22517566 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
22517498 GTATTTCTTA
22517508 TTTTATTTTTA--TTT-T
1 TTTTATTTTTATCTTTAT
*
22517523 CTTTATTTTTATCTTTAT
1 TTTTATTTTTATCTTTAT
22517541 TTTTATTTTTATC-TTA-
1 TTTTATTTTTATCTTTAT
22517557 TTTTATTTTT
1 TTTTATTTTT
22517567 TGATTTTCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
15 10 0.26
16 10 0.26
17 6 0.15
18 13 0.33
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTATCTTTAT
Found at i:22517659 original size:58 final size:58
Alignment explanation
Indices: 22517586--22517749 Score: 213
Period size: 58 Copynumber: 2.8 Consensus size: 58
22517576 TTAAATAAAA
* * *
22517586 TTCTAAAAAAATATTTTTGAGGAGAAGTTGAAAGTATCAATTTTTTTTGAAAATAAGTT
1 TTCT-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTC
* * * *
22517645 TTCTAAAAAGTATTTTTAAAGAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAGTC
1 TTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTC
* * *
22517703 TT-AAAAAAATTATTTTCGAGAAAAAGTTGAAAGTATCAATTTTTCTT
1 TTCTAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
22517750 ATACAAAAGC
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 5 0.06
58 81 0.90
59 4 0.04
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.40
Consensus pattern (58 bp):
TTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTC
Found at i:22528977 original size:3 final size:3
Alignment explanation
Indices: 22528969--22528993 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22528959 ATCGGTTTTC
22528969 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
22528994 GAAATGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22530403 original size:13 final size:13
Alignment explanation
Indices: 22530385--22530409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22530375 CGGTCTTATT
22530385 ATTTTAAAATAAA
1 ATTTTAAAATAAA
22530398 ATTTTAAAATAA
1 ATTTTAAAATAA
22530410 TATAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTTTAAAATAAA
Found at i:22539009 original size:2 final size:2
Alignment explanation
Indices: 22539002--22539035 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
22538992 TTTAATGACA
22539002 AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22539036 AACGAATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22546185 original size:39 final size:39
Alignment explanation
Indices: 22546107--22546184 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
22546097 ATTTTTATTT
*** *
22546107 TTATTTTTTAAAAATATATTTGATAAATAAAAATAAAAA
1 TTATTTTTTAAAAATATATAAAATAAAAAAAAATAAAAA
22546146 TTATTTTTTAAAAATATA-AAAATAAACAAATAAATAAAA
1 TTATTTTTTAAAAATATATAAAATAAA-AAA-AAATAAAA
22546185 TATTCAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 5 0.15
39 20 0.61
40 8 0.24
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (39 bp):
TTATTTTTTAAAAATATATAAAATAAAAAAAAATAAAAA
Found at i:22546248 original size:26 final size:25
Alignment explanation
Indices: 22546213--22546263 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
22546203 TTAATAGTAT
*
22546213 TTAATTATAA-ATATAAAATTATTTA
1 TTAATTATAATAT-TAAAAATATTTA
22546238 TTAATTAATAATATTAAAAATATTTA
1 TTAATT-ATAATATTAAAAATATTTA
22546264 AATATGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 6 0.26
26 15 0.65
27 2 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
TTAATTATAATATTAAAAATATTTA
Found at i:22546250 original size:25 final size:26
Alignment explanation
Indices: 22546213--22546263 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
22546203 TTAATAGTAT
*
22546213 TTAATTATAAATA-TAAAATTATTTA
1 TTAATTATAAATATTAAAAATATTTA
22546238 TTAATTA-ATAATATTAAAAATATTTA
1 TTAATTATA-AATATTAAAAATATTTA
22546264 AATATGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 11 0.48
26 11 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (26 bp):
TTAATTATAAATATTAAAAATATTTA
Found at i:22546679 original size:8 final size:8
Alignment explanation
Indices: 22546666--22546722 Score: 80
Period size: 8 Copynumber: 7.1 Consensus size: 8
22546656 TGGATTGAGG
22546666 GAAAGAAT
1 GAAAGAAT
22546674 GAAAGAAT
1 GAAAGAAT
22546682 GAAAGAAT
1 GAAAGAAT
22546690 GAAAAGAAT
1 G-AAAGAAT
22546699 GAAAGAAT
1 GAAAGAAT
*
22546707 GTAA-AAT
1 GAAAGAAT
*
22546714 TAAAGAAT
1 GAAAGAAT
22546722 G
1 G
22546723 TAAAAGAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
7 5 0.12
8 30 0.70
9 8 0.19
ACGTcount: A:0.61, C:0.00, G:0.23, T:0.16
Consensus pattern (8 bp):
GAAAGAAT
Found at i:22546728 original size:33 final size:33
Alignment explanation
Indices: 22546666--22546730 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
22546656 TGGATTGAGG
22546666 GAAAGAATGAAAGAATGAAAGAATGAAAAGAAT
1 GAAAGAATGAAAGAATGAAAGAATGAAAAGAAT
* *
22546699 GAAAGAATGTAA-AATTAAAGAATGTAAAAGAA
1 GAAAGAATGAAAGAATGAAAGAATG-AAAAGAA
22546731 ATATAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (33 bp):
GAAAGAATGAAAGAATGAAAGAATGAAAAGAAT
Found at i:22552438 original size:33 final size:32
Alignment explanation
Indices: 22552401--22552464 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 32
22552391 AAATTGATTG
22552401 TAAATA-AAAAGATTTAATTTAAATATAAAATTA
1 TAAATATAAAAGATTT-A-TTAAATATAAAATTA
* *
22552434 TAAATATTTAAATATTTATTAAATATAAAAT
1 TAAATA-TAAAAGATTTATTAAATATAAAAT
22552465 AATACTACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 19 0.70
34 1 0.04
35 7 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (32 bp):
TAAATATAAAAGATTTATTAAATATAAAATTA
Found at i:22575796 original size:52 final size:52
Alignment explanation
Indices: 22575736--22575836 Score: 166
Period size: 52 Copynumber: 1.9 Consensus size: 52
22575726 TGAAAGAAAC
* *
22575736 AGCTAATGAGTGAATATATGTATTATCTCAGCTGATAGTGTTTTGTTGCAGT
1 AGCTAATGAGTGAATATATGTATCATCCCAGCTGATAGTGTTTTGTTGCAGT
* *
22575788 AGCTAATGAGTGAATGTATGTATCATCCCAGCTGATTGTGTTTTGTTGC
1 AGCTAATGAGTGAATATATGTATCATCCCAGCTGATAGTGTTTTGTTGC
22575837 TCAACCAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.40
Consensus pattern (52 bp):
AGCTAATGAGTGAATATATGTATCATCCCAGCTGATAGTGTTTTGTTGCAGT
Found at i:22581018 original size:103 final size:103
Alignment explanation
Indices: 22580839--22581044 Score: 367
Period size: 103 Copynumber: 2.0 Consensus size: 103
22580829 GGGGGTGGGG
*
22580839 GAGGTTATATGAGGAAGAAATGAGATTTTACAGTGATTCTGAATTTCAATGCTGGAATATGCATC
1 GAGGTTATATGAGGAAGAAATGAGATTTTACAGTGATTCTGAATCTCAATGCTGGAATATGCATC
*
22580904 ATATCAACTCCATCAGGGACTTGAAAAGTTAACTACAT
66 ATATCAACTCCATCAGGAACTTGAAAAGTTAACTACAT
* *
22580942 GAGGTTATATGCGGAAGAAATGAGATTTTCCAGTGATTCTGAATCTCAATGCTGGAATATGCATC
1 GAGGTTATATGAGGAAGAAATGAGATTTTACAGTGATTCTGAATCTCAATGCTGGAATATGCATC
*
22581007 ATATCAACTCCATTAGGAACTTGAAAAGTTAACTACAT
66 ATATCAACTCCATCAGGAACTTGAAAAGTTAACTACAT
22581045 TAAGTGGTTT
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 98 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (103 bp):
GAGGTTATATGAGGAAGAAATGAGATTTTACAGTGATTCTGAATCTCAATGCTGGAATATGCATC
ATATCAACTCCATCAGGAACTTGAAAAGTTAACTACAT
Found at i:22588583 original size:12 final size:11
Alignment explanation
Indices: 22588565--22588605 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
22588555 GCGTTCAGAC
22588565 AATATATATAT
1 AATATATATAT
22588576 ATATATATATAT
1 A-ATATATATAT
*
22588588 AAAATATAGTAT
1 AATATATA-TAT
22588600 AATATA
1 AATATA
22588606 ATAGCATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (11 bp):
AATATATATAT
Found at i:22588604 original size:17 final size:17
Alignment explanation
Indices: 22588574--22588606 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22588564 CAATATATAT
22588574 ATATATATATATATAAA
1 ATATATATATATATAAA
22588591 ATATAGTATA-ATATAA
1 ATATA-TATATATATAA
22588607 TAGCATGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATATATATATATATAAA
Found at i:22596833 original size:2 final size:2
Alignment explanation
Indices: 22596826--22596850 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22596816 GTTACCTGCG
22596826 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
22596851 CTGCAGCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22597539 original size:2 final size:2
Alignment explanation
Indices: 22597532--22597560 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22597522 AATCAATTCT
22597532 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22597561 GTAAGGATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22597765 original size:12 final size:12
Alignment explanation
Indices: 22597694--22597766 Score: 53
Period size: 12 Copynumber: 6.2 Consensus size: 12
22597684 TATTTTGGCT
22597694 ATATATATTCAC
1 ATATATATTCAC
* *
22597706 ATATACATTCAT
1 ATATATATTCAC
*
22597718 ATATATA-T-AT
1 ATATATATTCAC
* *
22597728 ATATAT-TTTAT
1 ATATATATTCAC
*
22597739 ATATATCCATACAC
1 ATATAT--ATTCAC
22597753 ATATATATTCAC
1 ATATATATTCAC
22597765 AT
1 AT
22597767 GAGATGGGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
10 9 0.18
11 9 0.18
12 23 0.47
14 8 0.16
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATATATTCAC
Found at i:22598231 original size:23 final size:23
Alignment explanation
Indices: 22598198--22598241 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
22598188 ATTCTTCATT
*
22598198 TTATTTTTTTAAATTTTTTTAAG
1 TTATTTATTTAAATTTTTTTAAG
**
22598221 TTATTTATTTATTTTTTTTTA
1 TTATTTATTTAAATTTTTTTA
22598242 TTAGATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (23 bp):
TTATTTATTTAAATTTTTTTAAG
Found at i:22598458 original size:12 final size:12
Alignment explanation
Indices: 22598423--22598482 Score: 63
Period size: 12 Copynumber: 5.2 Consensus size: 12
22598413 TCTTACCCTA
* *
22598423 ATATATATAAAT
1 ATATATTTAATT
22598435 ATATATTT-ATT
1 ATATATTTAATT
*
22598446 ATTTATTTAATT
1 ATATATTTAATT
22598458 ATATATTT-A-T
1 ATATATTTAATT
*
22598468 ATATATTTTATT
1 ATATATTTAATT
22598480 ATA
1 ATA
22598483 AAAATTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
10 9 0.22
11 11 0.27
12 21 0.51
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATATTTAATT
Found at i:22598467 original size:8 final size:8
Alignment explanation
Indices: 22598434--22598471 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
22598424 TATATATAAA
22598434 TATATATT
1 TATATATT
22598442 TAT-TATT
1 TATATATT
* *
22598449 TATTTAAT
1 TATATATT
22598457 TATATATT
1 TATATATT
22598465 TATATAT
1 TATATAT
22598472 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATATATT
Found at i:22600037 original size:26 final size:24
Alignment explanation
Indices: 22599988--22600037 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
22599978 ATCATTTTTT
*
22599988 TTATTAAATTTAAATTAAATTCAG
1 TTATTAAATTTAAATTAAAATCAG
*
22600012 TTATTAAATATATATATTAAAATCAG
1 TTATTAAAT-T-TAAATTAAAATCAG
22600038 GTCGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 9 0.41
25 1 0.05
26 12 0.55
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
TTATTAAATTTAAATTAAAATCAG
Found at i:22600147 original size:20 final size:22
Alignment explanation
Indices: 22600124--22600166 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
22600114 ATAAAAATTT
22600124 TATATCAAAA-TTTAT-TTAAA
1 TATATCAAAATTTTATATTAAA
*
22600144 TATATTAAAATTTTATATTAAA
1 TATATCAAAATTTTATATTAAA
22600166 T
1 T
22600167 TAATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TATATCAAAATTTTATATTAAA
Found at i:22609840 original size:2 final size:2
Alignment explanation
Indices: 22609833--22609867 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
22609823 TCTTCCCCGA
22609833 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
22609868 ATCTTCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:22614434 original size:28 final size:28
Alignment explanation
Indices: 22614394--22614450 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
22614384 AGCCGGAGCC
* *
22614394 TCCATCCATATATACTGTACTACATTAG
1 TCCAACCATATATACTGTACTAAATTAG
22614422 TCCAACCATATATACTGTACTAAATTAG
1 TCCAACCATATATACTGTACTAAATTAG
22614450 T
1 T
22614451 TGGACCTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (28 bp):
TCCAACCATATATACTGTACTAAATTAG
Found at i:22617507 original size:2 final size:2
Alignment explanation
Indices: 22617500--22617551 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
22617490 TAAATATTAA
22617500 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22617542 AG AG AG AG AG
1 AG AG AG AG AG
22617552 CAGAATTGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22618955 original size:15 final size:16
Alignment explanation
Indices: 22618935--22618968 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
22618925 TTAATTTAAA
*
22618935 AATATAAAA-AATTAT
1 AATATAAAATAATAAT
22618950 AATATAAAATAATAAT
1 AATATAAAATAATAAT
22618966 AAT
1 AAT
22618969 TTTGATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATATAAAATAATAAT
Found at i:22624563 original size:21 final size:22
Alignment explanation
Indices: 22624531--22624572 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
22624521 CAACTGTTTG
*
22624531 TTTTATTTTTATTTTTTATTTA
1 TTTTATTTTTATTTTTCATTTA
22624553 TTTTA-TTTTATTTTTCATTT
1 TTTTATTTTTATTTTTCATTT
22624573 TTAGTTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (22 bp):
TTTTATTTTTATTTTTCATTTA
Found at i:22624584 original size:27 final size:27
Alignment explanation
Indices: 22624531--22624600 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
22624521 CAACTGTTTG
*
22624531 TTTTATTTTTATTTTTTATTTATTTTA
1 TTTTATTTTTATTTTTTATTGATTTTA
22624558 TTTTATTTTTCA-TTTTTAGTTGA-TTTA
1 TTTTATTTTT-ATTTTTTA-TTGATTTTA
*
22624585 TCTTTAGTTTT-TTTTT
1 T-TTTATTTTTATTTTT
22624601 AAGATAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
27 25 0.68
28 12 0.32
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.77
Consensus pattern (27 bp):
TTTTATTTTTATTTTTTATTGATTTTA
Found at i:22627451 original size:15 final size:15
Alignment explanation
Indices: 22627431--22627481 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
22627421 GTTTATAACT
* *
22627431 AGAAAAGGGAATGAA
1 AGAAAAGGAAAAGAA
22627446 AGAAAAGGAAAAGAA
1 AGAAAAGGAAAAGAA
*
22627461 AG-ACAGGAAAAGAA
1 AGAAAAGGAAAAGAA
*
22627475 AGGAAAG
1 AGAAAAG
22627482 AATCTACGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 13 0.42
15 18 0.58
ACGTcount: A:0.65, C:0.02, G:0.31, T:0.02
Consensus pattern (15 bp):
AGAAAAGGAAAAGAA
Found at i:22629950 original size:23 final size:23
Alignment explanation
Indices: 22629922--22629969 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
22629912 CTCTCATTGT
* *
22629922 ATGAATA-CCTTATTTTCATTGAC
1 ATGAATATCC-TATATTCAGTGAC
22629945 ATGAATATCCTATATTCAGTGAC
1 ATGAATATCCTATATTCAGTGAC
22629968 AT
1 AT
22629970 CAAGACATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (23 bp):
ATGAATATCCTATATTCAGTGAC
Found at i:22634181 original size:15 final size:14
Alignment explanation
Indices: 22634162--22634209 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
22634152 ATCATTGATT
22634162 AAAAATTTATTATA
1 AAAAATTTATTATA
22634176 ACAAAATTTATTA-A
1 A-AAAATTTATTATA
22634190 AATAAA-TTATTATA
1 AA-AAATTTATTATA
22634204 ATAAAA
1 A-AAAA
22634210 GATATAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 12 0.40
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAAATTTATTATA
Found at i:22638054 original size:14 final size:14
Alignment explanation
Indices: 22638035--22638064 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22638025 GGTATCAGAG
22638035 CGAGGTTCCAGGTT
1 CGAGGTTCCAGGTT
*
22638049 CGAGGTTCTAGGTT
1 CGAGGTTCCAGGTT
22638063 CG
1 CG
22638065 TGGGTCCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.37, T:0.30
Consensus pattern (14 bp):
CGAGGTTCCAGGTT
Found at i:22640443 original size:214 final size:214
Alignment explanation
Indices: 22640074--22640459 Score: 763
Period size: 214 Copynumber: 1.8 Consensus size: 214
22640064 AAAACAATAG
22640074 CAAACACTTATAGGTAAAATTTACTTCAAAATCTTTCATGAAATGCAATCCATTCACTTATAGGG
1 CAAACACTTATAGGTAAAATTTACTTCAAAATCTTTCATGAAATGCAATCCATTCACTTATAGGG
*
22640139 AGATGATGTCTTGTGTCCATTCATGAATGTAGATTTGGAAGCTCCTACAGAAGAAAAGAAGATAC
66 AGATGATGTCTTGCGTCCATTCATGAATGTAGATTTGGAAGCTCCTACAGAAGAAAAGAAGATAC
22640204 AACTAAATCTTTTCTCTTTCGCCAGTGTATCTTCTTTCTTTTTTGAATAAGTAAGTGTATCTTCT
131 AACTAAATCTTTTCTCTTTCGCCAGTGTATCTTCTTTCTTTTTTGAATAAGTAAGTGTATCTTCT
22640269 TTCTTTCACCATTTCAAAT
196 TTCTTTCACCATTTCAAAT
22640288 CAAACACTTATAGGTAAAATTTACTTCAAAATCTTTCATGAAATGCAATCCATTCACTTATAGGG
1 CAAACACTTATAGGTAAAATTTACTTCAAAATCTTTCATGAAATGCAATCCATTCACTTATAGGG
22640353 AGATGATGTCTTGCGTCCATTCATGAATGTAGATTTGGAAGCTCCTACAGAAGAAAAGAAGATAC
66 AGATGATGTCTTGCGTCCATTCATGAATGTAGATTTGGAAGCTCCTACAGAAGAAAAGAAGATAC
22640418 AACTAAATCTTTTCTCTTTCGCCAGTGTATCTTCTTTCTTTT
131 AACTAAATCTTTTCTCTTTCGCCAGTGTATCTTCTTTCTTTT
22640460 ACCATTTCAA
Statistics
Matches: 171, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
214 171 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (214 bp):
CAAACACTTATAGGTAAAATTTACTTCAAAATCTTTCATGAAATGCAATCCATTCACTTATAGGG
AGATGATGTCTTGCGTCCATTCATGAATGTAGATTTGGAAGCTCCTACAGAAGAAAAGAAGATAC
AACTAAATCTTTTCTCTTTCGCCAGTGTATCTTCTTTCTTTTTTGAATAAGTAAGTGTATCTTCT
TTCTTTCACCATTTCAAAT
Found at i:22642704 original size:22 final size:22
Alignment explanation
Indices: 22642679--22642720 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22642669 TTGTCTATCC
* *
22642679 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
22642701 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
22642721 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:22646419 original size:23 final size:25
Alignment explanation
Indices: 22646368--22646426 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
22646358 AAAGGGTTCG
* *
22646368 GCAATGAAGGCCTAAACAGGATTCG
1 GCAATGAAGGCCTAAACAGAATTCA
22646393 GCAATGAAGGCCTAAA-A-AATTCA
1 GCAATGAAGGCCTAAACAGAATTCA
*
22646416 GCAATAAAGGC
1 GCAATGAAGGC
22646427 TGAAAATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 14 0.45
24 1 0.03
25 16 0.52
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (25 bp):
GCAATGAAGGCCTAAACAGAATTCA
Found at i:22646662 original size:22 final size:22
Alignment explanation
Indices: 22646637--22646678 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22646627 TTGTCTATCC
* *
22646637 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
22646659 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
22646679 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:22647227 original size:2 final size:2
Alignment explanation
Indices: 22647215--22647255 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
22647205 GCTTAGATTA
* *
22647215 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22647256 GTTAATTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:22653747 original size:48 final size:46
Alignment explanation
Indices: 22653694--22653785 Score: 114
Period size: 46 Copynumber: 1.9 Consensus size: 46
22653684 TTGTGAGGTT
*
22653694 TTATGTACAAAAAAAATATATAAAT-TTTTATGTTTTTATTACATTTTA
1 TTATGTAC--AAAAAATATATAAATCTTATAT-TTTTTATTACATTTTA
* *
22653742 TTATGTACCAAAAATTTATAAATCGTTATATTTTTTATTACATT
1 TTATGTACAAAAAATATATAAATC-TTATATTTTTTATTACATT
22653786 AATTTATGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
46 13 0.33
47 13 0.33
48 13 0.33
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.50
Consensus pattern (46 bp):
TTATGTACAAAAAATATATAAATCTTATATTTTTTATTACATTTTA
Found at i:22660179 original size:36 final size:36
Alignment explanation
Indices: 22660139--22660211 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
22660129 TTTCCTCTGT
*
22660139 TTTTTGTTCTTCATCTGCTCTAAATCCTTCAATTGG
1 TTTTTGTTCTTCATCTACTCTAAATCCTTCAATTGG
*
22660175 TTTTTGTTCTTCATCTACTCTAAATCTTTCAATTGG
1 TTTTTGTTCTTCATCTACTCTAAATCCTTCAATTGG
22660211 T
1 T
22660212 ATCAGAGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.18, C:0.21, G:0.10, T:0.52
Consensus pattern (36 bp):
TTTTTGTTCTTCATCTACTCTAAATCCTTCAATTGG
Found at i:22661441 original size:29 final size:28
Alignment explanation
Indices: 22661395--22661451 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
22661385 TCATAAAAGT
* *
22661395 AAAAAAAAAATTAGTGGCAGTTGAGACA
1 AAAAAAAAAAGTAATGGCAGTTGAGACA
22661423 AAAAAAAAAGAGTAATGGCAGTTGAGACA
1 AAAAAAAAA-AGTAATGGCAGTTGAGACA
22661452 CCAATAGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.54, C:0.07, G:0.23, T:0.16
Consensus pattern (28 bp):
AAAAAAAAAAGTAATGGCAGTTGAGACA
Found at i:22671341 original size:77 final size:77
Alignment explanation
Indices: 22671217--22671407 Score: 210
Period size: 77 Copynumber: 2.5 Consensus size: 77
22671207 TTCAATTTTA
* * * * * * * *
22671217 TTTAATTTAACTTAATTCTAA-TCAAATTAATTAAATTACTATTTAATA-CTTAAATTTTGCTTT
1 TTTAATTTAATTTGATTTTAACT-AAATTAATTACATTACTACTTAATAGATTAAA-TCT-CTCT
22671280 CAATTAATTTTAATT
63 CAATTAATTTTAATT
* *
22671295 TTTAA-TTGATTTTATTTTAACTAAATTAATTACATTAACT-CTTAATAGATTAAATCTCTCTCA
1 TTTAATTTAATTTGATTTTAACTAAATTAATTACATT-ACTACTTAATAGATTAAATCTCTCTCA
22671358 ATTAATTTTAATT
65 ATTAATTTTAATT
* *
22671371 TTTAATTTAATTTGATTTTAATTAAATTAATCACATT
1 TTTAATTTAATTTGATTTTAACTAAATTAATTACATT
22671408 TATTTTTAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
76 23 0.24
77 59 0.61
78 14 0.15
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (77 bp):
TTTAATTTAATTTGATTTTAACTAAATTAATTACATTACTACTTAATAGATTAAATCTCTCTCAA
TTAATTTTAATT
Found at i:22671760 original size:76 final size:76
Alignment explanation
Indices: 22671599--22671767 Score: 205
Period size: 76 Copynumber: 2.2 Consensus size: 76
22671589 TTTAAAATTT
* *
22671599 TCTCTCAATTAATTTTAATTCTTAACAAATTTGATTCTAATCAAACTAATTACATTTACTTTTAA
1 TCTCTTAATTAATTTTAATTCTTAACAAATTTGATTCTAATCAAACTAATCACATTTACTTTTAA
* *
22671664 TATATTAAATC
66 TAGATTAAATA
* ** * * * * *
22671675 TCTCTTAATTAATTTTAATTTTTAATTTAATTTGATTTTGATTAAATTAATCACATTTATTTTTA
1 TCTCTTAATTAATTTTAATTCTTAA-CAAATTTGATTCTAATCAAACTAATCACATTTACTTTTA
*
22671740 ATAGA-TATATA
65 ATAGATTAAATA
22671751 TCTCTTAATTAATTTTA
1 TCTCTTAATTAATTTTA
22671768 TTTACATTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
76 44 0.56
77 35 0.44
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.51
Consensus pattern (76 bp):
TCTCTTAATTAATTTTAATTCTTAACAAATTTGATTCTAATCAAACTAATCACATTTACTTTTAA
TAGATTAAATA
Found at i:22672586 original size:17 final size:17
Alignment explanation
Indices: 22672553--22672681 Score: 50
Period size: 17 Copynumber: 7.3 Consensus size: 17
22672543 TTAATAGCTA
*
22672553 AAATTT-ATCTCTCAATT
1 AAATTTAAT-TCTTAATT
22672570 AAATTTAATTCTTAATT
1 AAATTTAATTCTTAATT
* *
22672587 -AATTTGATTCCGATCAAATT
1 AAATTTAATT-C--T-TAATT
* *
22672607 AATTATTTTTATTTTTAA-T
1 AA--A-TTTAATTCTTAATT
* *
22672626 AGATTAAATCTCTTAATT
1 AAATTTAAT-TCTTAATT
*
22672644 AATTTTAATTCTTAATT
1 AAATTTAATTCTTAATT
* * *
22672661 TAATTTGATT-TTACTT
1 AAATTTAATTCTTAATT
22672677 AAATT
1 AAATT
22672682 AATCACATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 23
0.67 0.15 0.19
Matches are distributed among these distances:
16 21 0.25
17 35 0.42
18 9 0.11
19 3 0.04
20 6 0.07
21 2 0.02
23 1 0.01
24 6 0.07
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.53
Consensus pattern (17 bp):
AAATTTAATTCTTAATT
Found at i:22672624 original size:78 final size:75
Alignment explanation
Indices: 22672524--22672670 Score: 188
Period size: 74 Copynumber: 1.9 Consensus size: 75
22672514 ATTTTTAATT
*
22672524 AAATTAATTACATTTATATTTAATAGCTAAAATTTATCTCTCAATTAAATTTAATTCTTAA-TTA
1 AAATTAATTACATTTATATTTAATAGAT-AAA---ATCTCTCAATTAAATTTAATTCTTAATTTA
22672588 ATTTGATTCCGATC
62 ATTTGATTCCGATC
** * * * *
22672602 AAATTAATTATTTTTATTTTTAATAGATTAAATCTCTTAATTAATTTTAATTCTTAATTTAATTT
1 AAATTAATTACATTTATATTTAATAGATAAAATCTCTCAATTAAATTTAATTCTTAATTTAATTT
22672667 GATT
66 GATT
22672671 TTACTTAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
74 24 0.39
75 11 0.18
77 2 0.03
78 24 0.39
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.51
Consensus pattern (75 bp):
AAATTAATTACATTTATATTTAATAGATAAAATCTCTCAATTAAATTTAATTCTTAATTTAATTT
GATTCCGATC
Found at i:22672651 original size:74 final size:76
Alignment explanation
Indices: 22672559--22672728 Score: 202
Period size: 74 Copynumber: 2.2 Consensus size: 76
22672549 GCTAAAATTT
* * * **
22672559 ATCTCTCAATTAAATTTAATTCTTAA-TTAATTTGATTCCGA-TCAAATTAATTATTTTTA-TTT
1 ATCTCTTAATTAATTTTAATTCTTAATTTAATTTGATT-CGACTCAAATTAATCACATTTATTTT
22672621 TTAATAGATTAA
65 TTAATAGATTAA
** *
22672633 ATCTCTTAATTAATTTTAATTCTTAATTTAATTTGATTTTACTTAAATTAATCACATTTATTTTT
1 ATCTCTTAATTAATTTTAATTCTTAATTTAATTTGATTCGACTCAAATTAATCACATTTATTTTT
* *
22672698 TAATAGCTTAT
66 TAATAGATTAA
22672709 ATCTCTTTTAATTAATTTTA
1 ATCTC--TTAATTAATTTTA
22672729 TTTACTATTT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
74 25 0.31
75 25 0.31
76 18 0.22
78 13 0.16
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (76 bp):
ATCTCTTAATTAATTTTAATTCTTAATTTAATTTGATTCGACTCAAATTAATCACATTTATTTTT
TAATAGATTAA
Found at i:22673099 original size:77 final size:78
Alignment explanation
Indices: 22672900--22673099 Score: 235
Period size: 77 Copynumber: 2.6 Consensus size: 78
22672890 TAAATTTGAT
* ** * * * *
22672900 TTAATTTGATTTGATTCTAAACAAATAAATAATATTTATATTTAATAACTTAAATTTCTTTTCAA
1 TTAATTTGATTTGATTTTAATTAAATTAATAACATTTATTTTTAATAACTTAAATCTCTTTTCAA
22672965 TTAATTGTAATTC
66 TTAATTGTAATTC
* * * *
22672978 TTAA-TTGATTTGATTTTAATTAAATTAATTACATTTACTCTTAATAGA-TTAGATCTC-TTTCA
1 TTAATTTGATTTGATTTTAATTAAATTAATAACATTTATTTTTAATA-ACTTAAATCTCTTTTCA
* *
22673040 GTTAATTTTAATTC
65 ATTAATTGTAATTC
* *
22673054 TTAATTTAATTTGATTTTAATTAAATTAATCACATTTATTTTTAAT
1 TTAATTTGATTTGATTTTAATTAAATTAATAACATTTATTTTTAAT
22673100 TTTATATAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
76 21 0.20
77 77 0.75
78 5 0.05
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.52
Consensus pattern (78 bp):
TTAATTTGATTTGATTTTAATTAAATTAATAACATTTATTTTTAATAACTTAAATCTCTTTTCAA
TTAATTGTAATTC
Found at i:22673533 original size:78 final size:77
Alignment explanation
Indices: 22673409--22673603 Score: 232
Period size: 78 Copynumber: 2.5 Consensus size: 77
22673399 TTCAATTTGA
* ** * *
22673409 TTTAATTTAATTTGATTTTGACTAAATTAATTGTATTTATATTTAATAGCTTAAATTTCTCTTTA
1 TTTAATTTAATTTGATTTTAACTAAATTAATTACATTTATACTTAATAGATTAAATTTCTC--TA
22673474 AACTAAATTTAATT
64 AACTAAATTTAATT
* * * *
22673488 TTTAA-TTGATTTGGTTTTAACTAAATTAATTACATTTACT-CTTAATGGATTAAATTTCTCTCA
1 TTTAATTTAATTTGATTTTAACTAAATTAATTACATTTA-TACTTAATAGATTAAATTTCTCTAA
* *
22673551 ATTAATTTTAATT
65 ACTAAATTTAATT
* *
22673564 TTTAATTTAATTTGATTTTAATTAAATTAATCACATTTAT
1 TTTAATTTAATTTGATTTTAACTAAATTAATTACATTTAT
22673604 TTTTAATCTT
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
76 19 0.19
77 29 0.29
78 45 0.45
79 6 0.06
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (77 bp):
TTTAATTTAATTTGATTTTAACTAAATTAATTACATTTATACTTAATAGATTAAATTTCTCTAAA
CTAAATTTAATT
Found at i:22682609 original size:17 final size:16
Alignment explanation
Indices: 22682588--22682630 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
22682578 TGTATTTATA
*
22682588 AAAAAATAAAAAATGT
1 AAAAAATAAAAAATCT
*
22682604 ATAAAATAAAAAAATCT
1 AAAAAAT-AAAAAATCT
22682621 AAAAAATAAA
1 AAAAAATAAA
22682631 TTTTGTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAAAATAAAAAATCT
Found at i:22682798 original size:31 final size:31
Alignment explanation
Indices: 22682755--22682815 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
22682745 CTAGAGATGT
*
22682755 AAGCTCTACATGTCTTATATCCTATCTATTA
1 AAGCCCTACATGTCTTATATCCTATCTATTA
22682786 AAGCCCTACATGTCTTATATCCTATCTATT
1 AAGCCCTACATGTCTTATATCCTATCTATT
22682816 GACATCCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.41
Consensus pattern (31 bp):
AAGCCCTACATGTCTTATATCCTATCTATTA
Found at i:22685370 original size:34 final size:34
Alignment explanation
Indices: 22685299--22685381 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 34
22685289 TGACTTGATG
* * *
22685299 TGAATTAATAAGTGATTTTATCTTGTTAGTTATA
1 TGAATTAATAAGTGATTTTATCTTGTTAATAAAA
* *
22685333 TGAATTCATAAGT-AGTTTTCTCTTGTTAATAAAA
1 TGAATTAATAAGTGA-TTTTATCTTGTTAATAAAA
**
22685367 TGAATTTTTAAGTGA
1 TGAATTAATAAGTGA
22685382 GATTATCGTG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 1 0.03
34 38 0.95
35 1 0.03
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (34 bp):
TGAATTAATAAGTGATTTTATCTTGTTAATAAAA
Found at i:22687716 original size:5 final size:5
Alignment explanation
Indices: 22687680--22687762 Score: 57
Period size: 5 Copynumber: 16.4 Consensus size: 5
22687670 TTAATATTCT
* *
22687680 TTTTA TCTTTA TTTTTG TTTTA CTTTT- CTTTA TTTTA TTTTA TTTT-
1 TTTTA T-TTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
* *
22687726 TTAT- TTTTA -TTTA TTTTCA CTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
22687763 ATTCTATTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
4 13 0.21
5 31 0.50
6 13 0.21
7 5 0.08
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:22687727 original size:27 final size:27
Alignment explanation
Indices: 22687681--22687754 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
22687671 TAATATTCTT
* *
22687681 TTTATCTTTATTTT-TGTTTTACTTTTC
1 TTTAT-TTTATTTTATTTTTTACTTTTA
*
22687708 TTTATTTTATTTTATTTTTTATTTTTA
1 TTTATTTTATTTTATTTTTTACTTTTA
22687735 TTTATTTTCACTTTTATTTT
1 TTTATTTT-A-TTTTATTTT
22687755 GTTTTATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 8 0.20
27 23 0.56
28 1 0.02
29 9 0.22
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (27 bp):
TTTATTTTATTTTATTTTTTACTTTTA
Found at i:22687730 original size:17 final size:17
Alignment explanation
Indices: 22687708--22687772 Score: 62
Period size: 17 Copynumber: 3.8 Consensus size: 17
22687698 TTTACTTTTC
22687708 TTTATTTTATTTTATTT
1 TTTATTTTATTTTATTT
22687725 TTTATTTT-TATTTA-TT
1 TTTATTTTAT-TTTATTT
* *
22687741 TTCACTTTTATTTTGTTT
1 TTTA-TTTTATTTTATTT
*
22687759 TATTATTCTATTTT
1 T-TTATTTTATTTT
22687773 CTTTAAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
16 6 0.15
17 19 0.49
18 12 0.31
19 2 0.05
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTATTTTATTTTATTT
Found at i:22687860 original size:59 final size:58
Alignment explanation
Indices: 22687788--22688060 Score: 323
Period size: 59 Copynumber: 4.7 Consensus size: 58
22687778 AATAAAAATA
* *
22687788 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTTT
1 AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
* * * * *
22687847 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTC
1 AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* * * *
22687906 CAAAGAATATTTTTGGGGAAAAGTTGAAAGTACCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * * ** * *
22687964 AAAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
1 AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
22688022 AAAAGAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
22688061 TCCTGCACAA
Statistics
Matches: 179, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
57 22 0.12
58 64 0.36
59 90 0.50
60 3 0.02
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.36
Consensus pattern (58 bp):
AAAAAAAGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:22691978 original size:11 final size:11
Alignment explanation
Indices: 22691964--22692022 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
22691954 GAAAAATGAG
22691964 AAAAAAGAAAA
1 AAAAAAGAAAA
* *
22691975 AAAAATGATGAA
1 AAAAAAGA-AAA
*
22691987 AAAAAAGAGAA
1 AAAAAAGAAAA
22691998 AAAAAAGAAAA
1 AAAAAAGAAAA
*
22692009 AAAGAAGGAAAA
1 AAA-AAAGAAAA
22692021 AA
1 AA
22692023 TGAGAAAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
11 23 0.56
12 18 0.44
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.03
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:22691980 original size:20 final size:20
Alignment explanation
Indices: 22691955--22692030 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 20
22691945 ACAATTGATG
22691955 AAAAATGAGAAAAAAGAAAA
1 AAAAATGAGAAAAAAGAAAA
22691975 AAAAATGATGAAAAAAAAGAGAAA
1 AAAAATGA-G--AAAAAAGA-AAA
*
22691999 AAAAA-GA-AAAAAAGAAGGA
1 AAAAATGAGAAAAAAGAA-AA
22692018 AAAAATGAGAAAA
1 AAAAATGAGAAAA
22692031 TGAAAAAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
18 1 0.02
19 14 0.29
20 10 0.21
21 5 0.10
23 10 0.21
24 8 0.17
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (20 bp):
AAAAATGAGAAAAAAGAAAA
Found at i:22691988 original size:12 final size:10
Alignment explanation
Indices: 22691955--22692030 Score: 66
Period size: 10 Copynumber: 7.3 Consensus size: 10
22691945 ACAATTGATG
*
22691955 AAAAATGAG-
1 AAAAAAGAGA
*
22691964 AAAAAAGAAA
1 AAAAAAGAGA
22691974 AAAAAATGATGAA
1 AAAAAA-GA-G-A
22691987 AAAAAAGAGA
1 AAAAAAGAGA
22691997 AAAAAA-AGA
1 AAAAAAGAGA
22692006 AAAAAAGAAGGA
1 AAAAAAG-A-GA
*
22692018 AAAAATGAGA
1 AAAAAAGAGA
22692028 AAA
1 AAA
22692031 TGAAAAAAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
9 16 0.29
10 18 0.32
11 5 0.09
12 10 0.18
13 7 0.12
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (10 bp):
AAAAAAGAGA
Found at i:22691990 original size:23 final size:22
Alignment explanation
Indices: 22691955--22692030 Score: 81
Period size: 23 Copynumber: 3.6 Consensus size: 22
22691945 ACAATTGATG
22691955 AAAAATGAG--AAAAAAGAAAA
1 AAAAATGAGAAAAAAAAGAAAA
*
22691975 AAAAATGATGAAAAAAAAGAGAA
1 AAAAATGA-GAAAAAAAAGAAAA
*
22691998 AAAAA--AG-AAAAAAAGAAGGA
1 AAAAATGAGAAAAAAAAGAA-AA
22692018 AAAAATGAGAAAA
1 AAAAATGAGAAAA
22692031 TGAAAAAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 9 0.20
20 15 0.33
21 2 0.04
22 2 0.04
23 18 0.39
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (22 bp):
AAAAATGAGAAAAAAAAGAAAA
Found at i:22691991 original size:32 final size:31
Alignment explanation
Indices: 22691955--22692038 Score: 100
Period size: 32 Copynumber: 2.7 Consensus size: 31
22691945 ACAATTGATG
*
22691955 AAAAATGAGAAAAAAGAAAAAAAAATGATGAA
1 AAAAATGAGAAAAAAGAAAAAAAAA-GAAGAA
* *
22691987 AAAAAAGAGAAAAAA-AAGAAAAAAAGAAGGA
1 AAAAATGAGAAAAAAGAA-AAAAAAAGAAGAA
*
22692018 AAAAATGAG-AAAATGAAAAAA
1 AAAAATGAGAAAAAAGAAAAAA
22692039 GAGATTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 8 0.18
31 16 0.36
32 21 0.47
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (31 bp):
AAAAATGAGAAAAAAGAAAAAAAAAGAAGAA
Found at i:22693365 original size:42 final size:42
Alignment explanation
Indices: 22693292--22694012 Score: 1003
Period size: 42 Copynumber: 17.1 Consensus size: 42
22693282 ATGATTGTTA
22693292 AGGAGCAATTTATTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
22693333 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693375 AGGAGCAATTTACTTTT-TCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
22693417 ATGAGCAATTGACTTTTTTCAAAAGTCGTGATGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCTC-AAAGTCGTGGTGCCTCTGTTTAG
* *
22693461 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* *
22693503 AGGAGCAATTTACTTTT-TCAAAGTCGTAGTGTCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693545 AGGAGCAATTTACTTTT-TCCAAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCT-C-AAAGTCGTGGTGCCTCTGTTTAG
*
22693589 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693631 AGGAGCAATTTACTTTTC-AAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693673 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
22693715 AGGAGCAATTTACTTTTCTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCTC-AAAGTCGTGGTGCCTCTGTTTAG
* *
22693759 AGGAGCAATTTACTTTCTAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693801 AGGAGCAATTTACTTTT-TCAAAGTCGTGGTGCCTGTGTTTAG
1 AGGAGCAATTTA-TTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
22693843 AGAAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693884 AGGAGCAA-TTA-TTTCCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
22693924 AGGAGCAATTTATTTTC-CAAAATTGTTGAGCCTCTGATTAG
1 AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
22693965 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTGCTTAG
1 AGGAGCAATTTAT-TTTCTCAAAGTCGTGGTGCCTCTGTTTAG
22694008 AGGAG
1 AGGAG
22694013 TTTTGGTAAA
Statistics
Matches: 616, Mismatches: 45, Indels: 36
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.01
40 34 0.06
41 86 0.14
42 330 0.54
43 63 0.10
44 99 0.16
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTATTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:22693452 original size:128 final size:126
Alignment explanation
Indices: 22693292--22694012 Score: 1076
Period size: 128 Copynumber: 5.7 Consensus size: 126
22693282 ATGATTGTTA
*
22693292 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCTCAAAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
*
22693356 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTTGTGGTGCCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
22693417 ATGAGCAATTGACTTTTTTCAAAAGTCGTGATGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAA
1 AGGAGCAATTTAC-TTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAA
* * *
22693482 AGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTACTTTTTCAAAGTCGTAGTGTCTCTGTTTAG
64 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
22693545 AGGAGCAATTTACTTTTTCCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAA
1 AGGAGCAATTTACTTTTT-C-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAA
22693610 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTTCAAAAGTCGTGGTGCCTCTGTTTAG
64 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
22693673 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCTCAAA
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCTC-AA
* *
22693738 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTAAAAGTCGTGGTGCCTCTGTTTAG
64 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
22693801 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTGTGTTTAGAGAAGCAATTTACTTTC-CAAAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
* **
22693865 TCGTGGTGCCTCTATTTAGAGGAGCAA-TTA-TTTCCCAAAGTCGTGGTGCCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * * * * * *
22693924 AGGAGCAATTTA-TTTTCCAAAATTGTTGAGCCTCTGATTAGAGGAGCCATTTATGTTTCTCAAA
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTCTCAAA
* * *
22693988 GTCGTTGAGCCTCTGCTTAGAGGAG
65 GTCGTGGTGCCTCTGTTTAGAGGAG
22694013 TTTTGGTAAA
Statistics
Matches: 547, Mismatches: 39, Indels: 21
0.90 0.06 0.03
Matches are distributed among these distances:
122 32 0.06
123 43 0.08
124 28 0.05
125 40 0.07
126 36 0.07
127 27 0.05
128 338 0.62
129 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (126 bp):
AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:22693614 original size:170 final size:169
Alignment explanation
Indices: 22693292--22694012 Score: 1039
Period size: 170 Copynumber: 4.3 Consensus size: 169
22693282 ATGATTGTTA
*
22693292 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCTCAAA
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-TCAAA
* * *
22693355 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAT
65 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAG
* *
22693419 GAGCAATTGACTTTTTTCAAAAGTCGTGATGCCTCTGTTTAG
130 GAGCAATTTAC-TTTCTC-AAAGTCGTGATGCCTCTGTTTAG
*
22693461 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTACTTTTTCAAAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
* * *
22693526 TCGTAGTGTCTCTGTTTAGAGGAGCAATTTACTTTTTCCAAAAGTTGTGGTGCCTCTGTTTAGAG
66 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAG
*
22693591 GAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
130 GAGCAATTTACTTTCTCAAAGTCGTGATGCCTCTGTTTAG
*
22693631 AGGAGCAATTTACTTT-TCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
1 AGGAGCAATTTACTTTCTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAA
22693695 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCTCAAAAGTCGTGGTGCCTCTGTTTAGA
65 GTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-CAAAAGTCGTGGTGCCTCTGTTTAGA
* *
22693760 GGAGCAATTTACTTTCTAAAAGTCGTGGTGCCTCTGTTTAG
129 GGAGCAATTTACTTTCTCAAAGTCGTGATGCCTCTGTTTAG
* * * *
22693801 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTGTGTTTAGAGAAGCAATTTAC-TTTCCAAAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
* *
22693865 TCGTGGTGCCTCTATTTAGAGGAGCAA-TTA--TTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGG
66 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGG
* * * *
22693927 AGCAATTTATTTTC-CAAAATTGTTGA-GCCTCTGATTAG
131 AGCAATTTACTTTCTCAAAGTCG-TGATGCCTCTGTTTAG
* * * * *
22693965 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAG
1 AGGAGCAATTTA-CTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
22694013 TTTTGGTAAA
Statistics
Matches: 508, Mismatches: 35, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
164 27 0.05
165 70 0.14
166 4 0.01
168 3 0.01
169 52 0.10
170 302 0.59
171 16 0.03
172 34 0.07
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (169 bp):
AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAAGTCGTGGTGCCTCTGTTTAGAGG
AGCAATTTACTTTCTCAAAGTCGTGATGCCTCTGTTTAG
Found at i:22694210 original size:6 final size:6
Alignment explanation
Indices: 22694199--22694232 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
22694189 GTTTTATATT
22694199 TTTTTA TTTTTA -TTTTA TTTTTA TTTTATA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTT
22694233 ATGTATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 15 0.58
7 6 0.23
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:22694216 original size:11 final size:11
Alignment explanation
Indices: 22694185--22694234 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
22694175 GTAAGCCCAA
*
22694185 TTTTGTTTTAT
1 TTTTATTTTAT
*
22694196 ATTT-TTTTAT
1 TTTTATTTTAT
22694206 TTTTATTTTAT
1 TTTTATTTTAT
22694217 TTTTATTTTAT
1 TTTTATTTTAT
22694228 ATTTTAT
1 -TTTTAT
22694235 GTATATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
10 9 0.26
11 20 0.57
12 6 0.17
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:22694251 original size:25 final size:24
Alignment explanation
Indices: 22694193--22694278 Score: 72
Period size: 25 Copynumber: 3.6 Consensus size: 24
22694183 AATTTTGTTT
*
22694193 TATA-TTTTTTTAT-TTTTAT-TT
1 TATATTTTTTTTATATTTTATGTA
22694214 TAT-TTTTATTTTATATTTTATGTA
1 TATATTTT-TTTTATATTTTATGTA
**
22694238 TATATTTTTCTTTATATCCTATGTA
1 TATATTTTT-TTTATATTTTATGTA
*
22694263 TTTATTATTTATTTAT
1 TATATT-TTT-TTTAT
22694279 TATTACTATT
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
21 6 0.11
22 6 0.11
23 6 0.11
24 5 0.09
25 22 0.42
26 8 0.15
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.71
Consensus pattern (24 bp):
TATATTTTTTTTATATTTTATGTA
Found at i:22694313 original size:25 final size:24
Alignment explanation
Indices: 22694261--22694313 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
22694251 ATATCCTATG
* *
22694261 TATTTATTATTTATTTATTATTAC
1 TATTTATTATATATATATTATTAC
*
22694285 TATTTATTAATATATATATTATTAT
1 TATTTATT-ATATATATATTATTAC
22694310 TATT
1 TATT
22694314 ATTTTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTTATTATATATATATTATTAC
Found at i:22694775 original size:10 final size:10
Alignment explanation
Indices: 22694762--22694786 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22694752 TAGCAGAAAT
22694762 TTTTTGGAGA
1 TTTTTGGAGA
22694772 TTTTTGGAGA
1 TTTTTGGAGA
22694782 TTTTT
1 TTTTT
22694787 TTCTGGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (10 bp):
TTTTTGGAGA
Found at i:22695347 original size:11 final size:11
Alignment explanation
Indices: 22695314--22695448 Score: 64
Period size: 12 Copynumber: 11.5 Consensus size: 11
22695304 TTTTTTTTGA
22695314 ATTTATTTATTT
1 ATTT-TTTATTT
22695326 ATTTGTTTATTT
1 ATTT-TTTATTT
22695338 ATTTTTTATTT
1 ATTTTTTATTT
**
22695349 ATTAGATTAGGTTT
1 ATT-TTTTA--TTT
*
22695363 ATTTAATATTCTTT
1 ATTT--T-TTATTT
22695377 -TTATCTTTATTT
1 ATT-T-TTTATTT
22695389 -TATTTTTATTT
1 AT-TTTTTATTT
22695400 -TTGTTTTACTTT
1 ATT-TTTTA-TTT
*
22695412 ATTTTAT-TTT
1 ATTTTTTATTT
*
22695422 ATTTTAT-TTT
1 ATTTTTTATTT
22695432 ATATTTTTATTT
1 AT-TTTTTATTT
22695444 ATTTT
1 ATTTT
22695449 CACTTTTATT
Statistics
Matches: 100, Mismatches: 10, Indels: 27
0.73 0.07 0.20
Matches are distributed among these distances:
10 16 0.16
11 30 0.30
12 36 0.36
13 6 0.06
14 10 0.10
16 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (11 bp):
ATTTTTTATTT
Found at i:22695367 original size:4 final size:4
Alignment explanation
Indices: 22695314--22695351 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
22695304 TTTTTTTTGA
*
22695314 ATTT ATTT ATTT ATTT GTTT ATTT ATTT -TTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATT
22695352 AGATTAGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:22695392 original size:5 final size:5
Alignment explanation
Indices: 22695375--22695468 Score: 89
Period size: 5 Copynumber: 17.4 Consensus size: 5
22695365 TTAATATTCT
* *
22695375 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTA TTTTA TTTTA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA
* *
22695423 TTTTA TTTTA TATTTT TATTTA TTTTCA CTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA T-TTTA T-TTTA TTTT-A -TTTTA TTTTA TTTTA TT
22695469 ATTCTATTTT
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
5 46 0.61
6 26 0.34
7 4 0.05
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:22695396 original size:17 final size:16
Alignment explanation
Indices: 22695360--22695478 Score: 88
Period size: 17 Copynumber: 7.5 Consensus size: 16
22695350 TTAGATTAGG
* * *
22695360 TTTATTTAATATTCTT
1 TTTATTTTATTTTATT
22695376 TTTATCTTTATTTTATT
1 TTTAT-TTTATTTTATT
* *
22695393 TTTATTTTTGTTTTA-C
1 TTTA-TTTTATTTTATT
22695409 TTTATTTTATTTTA-T
1 TTTATTTTATTTTATT
22695424 TTTATTTTA---TATT
1 TTTATTTTATTTTATT
*
22695437 TTTA-TTTATTTTCACT
1 TTTATTTTATTTT-ATT
*
22695453 TTTATTTTGTTTTATT
1 TTTATTTTATTTTATT
22695469 ATTCTATTTT
1 -TT-TATTTT
22695479 CTTTAAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
12 6 0.07
13 5 0.06
15 19 0.23
16 17 0.20
17 29 0.35
18 7 0.08
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:22695400 original size:22 final size:21
Alignment explanation
Indices: 22695375--22695478 Score: 86
Period size: 22 Copynumber: 4.7 Consensus size: 21
22695365 TTAATATTCT
22695375 TTTTATCTTTATTTTATTTTTA
1 TTTTAT-TTTATTTTATTTTTA
* *
22695397 TTTTTGTTTTACTTTA-TTTTA
1 -TTTTATTTTATTTTATTTTTA
22695418 TTTTATTTTATTTTATATTTT-
1 TTTTATTTTATTTTAT-TTTTA
*
22695439 TATTTATTTTCACTTTTATTTTGTT
1 T-TTTATTTT-A-TTTTATTTT-TA
*
22695464 TTATTATTCTATTTT
1 TT-TTATTTTATTTT
22695479 CTTTAAATAA
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
20 13 0.19
21 6 0.09
22 20 0.29
23 13 0.19
24 9 0.13
25 7 0.10
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTATTTTATTTTATTTTTA
Found at i:22695411 original size:27 final size:27
Alignment explanation
Indices: 22695375--22695448 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 27
22695365 TTAATATTCT
22695375 TTTTATCTTTATTTTATTTTTATTTTTG
1 TTTTATCTTTATTTTA-TTTTATTTTTG
22695403 TTTTA-CTTTATTTTATTTTATTTTAT-
1 TTTTATCTTTATTTTATTTTATTTT-TG
*
22695429 TTTATATTTTTA-TTTATTTT
1 TTT-TATCTTTATTTTATTTT
22695449 CACTTTTATT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
26 12 0.29
27 21 0.50
28 9 0.21
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (27 bp):
TTTTATCTTTATTTTATTTTATTTTTG
Found at i:22695774 original size:70 final size:71
Alignment explanation
Indices: 22695698--22695839 Score: 196
Period size: 72 Copynumber: 2.0 Consensus size: 71
22695688 AGTTAAAAGT
* * * * *
22695698 ATCAATTTTCCTTGAAAATCAAGGTTTCCAAAAAAT-ATTTTTTAGGAAAAGTTGAAAGTATCAA
1 ATCAATTTTCCTTAAAAATAAAGGTTTCAAAAAAATAACTTTTGAGGAAAAGTTGAAAGTATCAA
22695762 TTTTCC
66 TTTTCC
** *
22695768 ATCAATTTTCCTTAAAAATAAATTTTTTAAAAAAATCAACTTTTGAGGAAAAGTTGAAAGTATCA
1 ATCAATTTTCCTTAAAAATAAAGGTTTCAAAAAAAT-AACTTTTGAGGAAAAGTTGAAAGTATCA
22695833 ATTTTCC
65 ATTTTCC
22695840 TTGAAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 30 0.48
72 32 0.52
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (71 bp):
ATCAATTTTCCTTAAAAATAAAGGTTTCAAAAAAATAACTTTTGAGGAAAAGTTGAAAGTATCAA
TTTTCC
Found at i:22695899 original size:59 final size:57
Alignment explanation
Indices: 22695495--22695767 Score: 336
Period size: 59 Copynumber: 4.7 Consensus size: 57
22695485 ATAAAAATAA
*
22695495 AAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC-C
* *
22695554 AAAAAAGATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCC
* * * * *
22695613 AAAGAATATTTTTGGGGAAAAGCTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
** * * *
22695670 --AAAAGGTTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATCAAGGTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AA-ATTTCC
*
22695727 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
22695768 ATCAATTTTC
Statistics
Matches: 183, Mismatches: 25, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
55 39 0.21
56 2 0.01
57 8 0.04
58 9 0.05
59 118 0.64
60 7 0.04
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
Found at i:22700892 original size:21 final size:20
Alignment explanation
Indices: 22700850--22700892 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
22700840 CCTAATTAGA
*
22700850 TTTTTTATTTAAATATATAT
1 TTTTTTATTTAAATATAAAT
22700870 TTTTATTATTTTAAATA-AAAT
1 TTTT-TTA-TTTAAATATAAAT
22700891 TT
1 TT
22700893 ACAATTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 8 0.40
22 8 0.40
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTTTATTTAAATATAAAT
Found at i:22701850 original size:9 final size:9
Alignment explanation
Indices: 22701836--22701861 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22701826 TTTTTTGACA
22701836 CATTGCTAT
1 CATTGCTAT
22701845 CATTGCTAT
1 CATTGCTAT
22701854 CATTGCTA
1 CATTGCTA
22701862 AATTGGTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (9 bp):
CATTGCTAT
Found at i:22702863 original size:14 final size:14
Alignment explanation
Indices: 22702825--22702855 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
22702815 TTAAATTTTA
22702825 TTTTTATTTTAATT
1 TTTTTATTTTAATT
*
22702839 TTTTTAGTTTAATT
1 TTTTTATTTTAATT
22702853 TTT
1 TTT
22702856 GTTTTTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTAATT
Found at i:22703550 original size:55 final size:55
Alignment explanation
Indices: 22703482--22703635 Score: 217
Period size: 55 Copynumber: 2.9 Consensus size: 55
22703472 TTTTACATGA
* *
22703482 ATTTGCCTTATTTATATATTATTT-TTTGCATGATTATATATTTAATTGCATATTT
1 ATTTGCATGATTTATATATT-TTTATTTGCATGATTATATATTTAATTGCATATTT
22703537 ATTTGCATGATTTATATATTTTTATTTGCATGATTATATATTTAATTGCATATTT
1 ATTTGCATGATTTATATATTTTTATTTGCATGATTATATATTTAATTGCATATTT
* ** *
22703592 ATTTGCATGA-TT-TACATTGGTAATTGCATGATTATATA-TTAATT
1 ATTTGCATGATTTATATATTTTTATTTGCATGATTATATATTTAATT
22703636 ACATGATTAT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
52 6 0.07
53 22 0.24
54 5 0.05
55 59 0.64
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (55 bp):
ATTTGCATGATTTATATATTTTTATTTGCATGATTATATATTTAATTGCATATTT
Found at i:22703576 original size:22 final size:23
Alignment explanation
Indices: 22703534--22703579 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
22703524 TAATTGCATA
22703534 TTTATTTGCATGATTTATATATT
1 TTTATTTGCATGATTTATATATT
22703557 TTTATTTGCATGA-TTATATATT
1 TTTATTTGCATGATTTATATATT
22703579 T
1 T
22703580 AATTGCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (23 bp):
TTTATTTGCATGATTTATATATT
Found at i:22703594 original size:32 final size:32
Alignment explanation
Indices: 22703557--22703620 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
22703547 TTTATATATT
*
22703557 TTTATTTGCATGATTATATATT-TAATTGCATA
1 TTTATTTGCATGATT-TACATTGTAATTGCATA
22703589 TTTATTTGCATGATTTACATTGGTAATTGCAT
1 TTTATTTGCATGATTTACATT-GTAATTGCAT
22703621 GATTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 5 0.17
32 15 0.52
33 9 0.31
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.52
Consensus pattern (32 bp):
TTTATTTGCATGATTTACATTGTAATTGCATA
Found at i:22703640 original size:19 final size:19
Alignment explanation
Indices: 22703612--22703654 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22703602 TTTACATTGG
*
22703612 TAATTGCATGATTA-TATAT
1 TAATTACATGATTATTA-AT
22703631 TAATTACATGATTATTAAT
1 TAATTACATGATTATTAAT
22703650 TAATT
1 TAATT
22703655 TATTTATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.49
Consensus pattern (19 bp):
TAATTACATGATTATTAAT
Found at i:22703746 original size:24 final size:24
Alignment explanation
Indices: 22703719--22703782 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
22703709 TATTATTATT
* *
22703719 ATATAATTTTATATTTATTACATG
1 ATATAATATTATATTTATTACACG
* *
22703743 ATATGATATTATATATTATTGCACG
1 ATATAATATTATAT-TTATTACACG
22703768 AT-TAATATTATATTT
1 ATATAATATTATATTT
22703783 GAATGATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 10 0.29
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.52
Consensus pattern (24 bp):
ATATAATATTATATTTATTACACG
Found at i:22704024 original size:25 final size:24
Alignment explanation
Indices: 22703996--22704043 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
22703986 TGATATTTGA
22703996 TATGATTTATAATATTT-TTGCATGG
1 TATGA-TT-TAATATTTATTGCATGG
22704021 TATGATTTAATATTTATTGCATG
1 TATGATTTAATATTTATTGCATG
22704044 ATTGCTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
24 9 0.41
25 5 0.23
ACGTcount: A:0.29, C:0.04, G:0.15, T:0.52
Consensus pattern (24 bp):
TATGATTTAATATTTATTGCATGG
Found at i:22704055 original size:22 final size:23
Alignment explanation
Indices: 22704005--22704059 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
22703995 ATATGATTTA
* *
22704005 TAATATTTTTGCATGGTATGATT
1 TAATATTTTTGCATGATATGACT
22704028 TAATATTTATTGCATGAT-TG-CT
1 TAATATTT-TTGCATGATATGACT
22704050 TAATATTTTT
1 TAATATTTTT
22704060 TATAGAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 2 0.07
22 9 0.31
23 10 0.34
24 8 0.28
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (23 bp):
TAATATTTTTGCATGATATGACT
Found at i:22708674 original size:12 final size:12
Alignment explanation
Indices: 22708657--22708681 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22708647 AACATTCAAG
22708657 AGTATTTTATTT
1 AGTATTTTATTT
22708669 AGTATTTTATTT
1 AGTATTTTATTT
22708681 A
1 A
22708682 TCTGTCATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (12 bp):
AGTATTTTATTT
Found at i:22711412 original size:33 final size:33
Alignment explanation
Indices: 22711372--22711435 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
22711362 GATCCCTTTG
22711372 GCCAAGGGATCATATGCTTAGGTGATCGATCTA
1 GCCAAGGGATCATATGCTTAGGTGATCGATCTA
*
22711405 GCCAAGGGATCTTATGCTTAGGTGATCGATC
1 GCCAAGGGATCATATGCTTAGGTGATCGATC
22711436 CCTTATATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (33 bp):
GCCAAGGGATCATATGCTTAGGTGATCGATCTA
Found at i:22712774 original size:218 final size:218
Alignment explanation
Indices: 22712396--22712834 Score: 702
Period size: 218 Copynumber: 2.0 Consensus size: 218
22712386 AAATATGTGG
* * * *
22712396 AAAAACATCTGGGGAATAGTATTATGATGGATCATTAAGGAGGAAGTGGAGAATGAAAAAAATGA
1 AAAAACATCTGAGGAACAGTATTAGGATGGATCATTAAGAAGGAAGTGGAGAATGAAAAAAATGA
** * *
22712461 GACTGTTGTACATTTTGAAAGTGTTCAATATCAACTTTAACTTGACGAACTTGGAAAACTAGCTC
66 GACTGTTGTACATTTCAAAAGTGTTCAATATCAACTCTAACTTGACGAACTTAGAAAACTAGCTC
*
22712526 TTGTTGGGTCATTTTCATATTTTTCAATCTAGAATTCATAGTCTCGACCACTGAGTGTAGATTAT
131 TTGTTGGGTCATTTTCATATTTTTCAATCTAGAATTCATAGTCTCAACCACTGAGTGTAGATTAT
22712591 TCATTTGAAGCATAAGCATTTCT
196 TCATTTGAAGCATAAGCATTTCT
* * *
22712614 AAAAACATCTGAGGAACGGTATTAGGATGGATCATTAATAAGGATA-TGGAGAATGAGAAAAATG
1 AAAAACATCTGAGGAACAGTATTAGGATGGATCATTAAGAAGGA-AGTGGAGAATGAAAAAAATG
* * * *
22712678 AGGCTGTTGTGCATTTCAAAAGTGTTTAATATCAACTCTAACTTGGCGAACTTAGAAAA-TCAGC
65 AGACTGTTGTACATTTCAAAAGTGTTCAATATCAACTCTAACTTGACGAACTTAGAAAACT-AGC
22712742 TCTTGTTGGGTCATTTTCATATTTTTCAATCTAGAATTCATAGTCTCAACCACTGAGTGTAGATT
129 TCTTGTTGGGTCATTTTCATATTTTTCAATCTAGAATTCATAGTCTCAACCACTGAGTGTAGATT
22712807 ATTCATTTGAAGCATAAGCATTTCT
194 ATTCATTTGAAGCATAAGCATTTCT
22712832 AAA
1 AAA
22712835 GCTTCTTGGA
Statistics
Matches: 203, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
217 1 0.00
218 201 0.99
219 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (218 bp):
AAAAACATCTGAGGAACAGTATTAGGATGGATCATTAAGAAGGAAGTGGAGAATGAAAAAAATGA
GACTGTTGTACATTTCAAAAGTGTTCAATATCAACTCTAACTTGACGAACTTAGAAAACTAGCTC
TTGTTGGGTCATTTTCATATTTTTCAATCTAGAATTCATAGTCTCAACCACTGAGTGTAGATTAT
TCATTTGAAGCATAAGCATTTCT
Found at i:22714428 original size:73 final size:74
Alignment explanation
Indices: 22714299--22714436 Score: 181
Period size: 73 Copynumber: 1.9 Consensus size: 74
22714289 TTGGTTCCTC
* * * *
22714299 AACATTTTCCACTTAATTTGGCTACTGGATGAAAAACTAATCAATCCGATCTAAGGGGGATCGAT
1 AACATTTTCCACTTAATTTGACTACTGGATGAAAAACCAATCAATCCGATCCAAGGGAGATCGAT
22714364 TGATCCTTT
66 TGATCCTTT
* * **
22714373 AACATTTTCC-CTTCATTTGACTACTGGATGGAAAACCAAT-ATATTTGATCCAAGGGAGATCGA
1 AACATTTTCCACTTAATTTGACTACTGGATGAAAAACCAATCA-ATCCGATCCAAGGGAGATCGA
22714436 T
65 T
22714437 CGGTTTCACC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
72 1 0.02
73 44 0.80
74 10 0.18
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (74 bp):
AACATTTTCCACTTAATTTGACTACTGGATGAAAAACCAATCAATCCGATCCAAGGGAGATCGAT
TGATCCTTT
Found at i:22719027 original size:24 final size:23
Alignment explanation
Indices: 22718983--22719029 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
22718973 CATAAAATTT
**
22718983 ATAAAATAATTAATTCTAAGTAA
1 ATAAAATAATTAATTAAAAGTAA
*
22719006 ATAAACATTATTAATTAAAAGTAA
1 ATAAA-ATAATTAATTAAAAGTAA
22719030 CTAACAACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
ATAAAATAATTAATTAAAAGTAA
Found at i:22720951 original size:42 final size:42
Alignment explanation
Indices: 22720898--22721377 Score: 314
Period size: 43 Copynumber: 11.5 Consensus size: 42
22720888 GTGTTTTTCT
* * *
22720898 TTTTTTTTTTC-AAAGTTTCAACGCTTCAGTTATAGGAGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTAT-GGAGAGCA
* *
22720940 TTTTAGTTTTCAAAAGTTCCAAAGCCTCAGTTAT-GAGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGA-GAGCA
* * * *
22720982 TTTTATTTATTTTCAAACGTTTCAAAGCCTCAGTTGTGGGGGAGTA
1 TTTTA--T-TTTTCAAAAGTTTCAAAGCCTCAGTTAT-GGAGAGCA
* * * * * *
22721028 -TTTA-TTTTCAAAAGTTTCAAAACATTAATTTTAGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTAT-GGAGAGCA
* * *
22721069 TTTTATTTTT-TAAAGTTTCAAAGCCTCAATTATGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGAGAGCA
* * * *
22721110 TTTTATTTTTCCAAAGTTCCAAAGCCTTAGTTATAGTG-GAGTA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTAT-G-GAGAGCA
* *
22721153 TTTTATTTTTCAAAAGTTTCAAAACCTCAGTTATGTGATAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATG-GAGAGCA
* * *
22721196 TTTTA-TTTTCAAAAGTTTCAAAGCTTTAGTTGTGG-G-G--
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGAGAGCA
* * * * * *
22721233 ---GA--TTT-AAAAGTTCCAAAACCAT-AATTGTGGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCC-TCAGTTAT-GGAGAGCA
* * * * * *
22721270 TGTTATATTTCAAAAGTTCCAAAACCTCAATTATAGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTAT-GGAGAGCA
* * * *
22721313 TTTTATTTTTCAAAAGTTTCAAGGCCTTAATTATGGGGAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGAG-AGCA
22721356 TTTT-TTTTTCAAAAGTTTCAAA
1 TTTTATTTTTCAAAAGTTTCAAA
22721378 CTTCTATCAA
Statistics
Matches: 356, Mismatches: 55, Indels: 54
0.77 0.12 0.12
Matches are distributed among these distances:
32 17 0.05
33 6 0.02
34 2 0.01
35 1 0.00
39 1 0.00
40 1 0.00
41 50 0.14
42 113 0.32
43 130 0.37
44 1 0.00
45 29 0.08
46 4 0.01
47 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (42 bp):
TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTATGGAGAGCA
Found at i:22721092 original size:128 final size:128
Alignment explanation
Indices: 22720930--22721219 Score: 347
Period size: 127 Copynumber: 2.3 Consensus size: 128
22720920 GCTTCAGTTA
* *
22720930 TAGGAGAGCATTTTAGTTTTCAAAAGTTCCAAAGCCTCAGTTATGAGGAGCATTTTATTTATTTT
1 TAGGAGAGCATTTTAGTTTTCAAAAGTTCCAAAGCCTCAATTATGAGGAGCATTTTA-TT-TTTC
* * *
22720995 CAAACGTTTCAAAGCCTCAGTTGTGGGGGAGTA-TTTA-TTTTCAAAAGTTTCAAAACATTAATT
64 CAAA-GTTCCAAAGCCTCAGTTATAGGGGAGTATTTTATTTTTCAAAAGTTTCAAAACATTAATT
22721058 T
128 T
* ** * *
22721059 TAGGGGAGCATTTTA-TTTTTTAAAGTTTCAAAGCCTCAATTATGGGGAGCATTTTATTTTTCCA
1 TAGGAGAGCATTTTAGTTTTCAAAAGTTCCAAAGCCTCAATTATGAGGAGCATTTTATTTTTCCA
* * * * * *
22721123 AAGTTCCAAAGCCTTAGTTATAGTGGAGTATTTTATTTTTCAAAAGTTTCAAAACCTCAGTTA
66 AAGTTCCAAAGCCTCAGTTATAGGGGAGTATTTTATTTTTCAAAAGTTTCAAAACATTAATTT
* *
22721186 T-GTGATAGCATTTTA-TTTTCAAAAGTTTCAAAGC
1 TAG-GAGAGCATTTTAGTTTTCAAAAGTTCCAAAGC
22721220 TTTAGTTGTG
Statistics
Matches: 138, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
125 23 0.17
126 12 0.09
127 53 0.38
128 36 0.26
129 14 0.10
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (128 bp):
TAGGAGAGCATTTTAGTTTTCAAAAGTTCCAAAGCCTCAATTATGAGGAGCATTTTATTTTTCCA
AAGTTCCAAAGCCTCAGTTATAGGGGAGTATTTTATTTTTCAAAAGTTTCAAAACATTAATTT
Found at i:22721288 original size:160 final size:163
Alignment explanation
Indices: 22720947--22721377 Score: 455
Period size: 160 Copynumber: 2.6 Consensus size: 163
22720937 GCATTTTAGT
*
22720947 TTTCAAAAGTTCCAAAGCCTCAGTTAT-GAGGAGCATTTTATTTATTTTCAAACGTTTCAAAGCC
1 TTTCAAAAGTTCCAAAGCCTCAGTTATAGAGGAGCATTTTA--T-TTTTCAAAAGTTTCAAAGCC
* * * *
22721011 TCAGTTGTGGGGGAGTA-TTTATTTTCAAAAGTTTCAAAACATTAATTTTAGGGGAGCATTTTAT
63 TCAGTTAT-GGGAAGCATTTTATTTTCAAAAGTTTCAAAACATTAATTGTAGGGGAGCATTTTA-
* * * *
22721075 TTTTTAAAGTTTCAAAGCCTCAATTATGGGGAGCATTTTATT
126 ----TAAAGTTCCAAAACCTCAATTATGGGGAGCATGTTATA
* * * * *
22721117 TTTCCAAAGTTCCAAAGCCTTAGTTATAGTGGAGTATTTTATTTTTCAAAAGTTTCAAAACCTCA
1 TTTCAAAAGTTCCAAAGCCTCAGTTATAGAGGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCA
* * * *
22721182 GTTATGTGATAGCATTTTATTTTCAAAAGTTTCAAAGCTTTAGTTGT-GGGG-G-A-TTTA-AAA
66 GTTATGGGA-AGCATTTTATTTTCAAAAGTTTCAAAACATTAATTGTAGGGGAGCATTTTATAAA
*
22721242 GTTCCAAAACCAT-AATTGTGGGGGAGCATGTTATA
130 GTTCCAAAACC-TCAATTAT-GGGGAGCATGTTATA
* * * * *
22721277 TTTCAAAAGTTCCAAAACCTCAATTATAGGGGAGCATTTTATTTTTCAAAAGTTTCAAGGCCTTA
1 TTTCAAAAGTTCCAAAGCCTCAGTTATAGAGGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCA
* *
22721342 ATTATGGGGAAGCATTTTTTTTTCAAAAGTTTCAAA
66 GTTAT-GGGAAGCATTTTATTTTCAAAAGTTTCAAA
22721378 CTTCTATCAA
Statistics
Matches: 224, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
159 17 0.08
160 99 0.44
161 3 0.01
165 4 0.02
166 1 0.00
167 3 0.01
168 32 0.14
169 29 0.13
170 25 0.11
171 11 0.05
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.38
Consensus pattern (163 bp):
TTTCAAAAGTTCCAAAGCCTCAGTTATAGAGGAGCATTTTATTTTTCAAAAGTTTCAAAGCCTCA
GTTATGGGAAGCATTTTATTTTCAAAAGTTTCAAAACATTAATTGTAGGGGAGCATTTTATAAAG
TTCCAAAACCTCAATTATGGGGAGCATGTTATA
Found at i:22722336 original size:54 final size:54
Alignment explanation
Indices: 22722284--22722588 Score: 234
Period size: 55 Copynumber: 5.8 Consensus size: 54
22722274 TTTTACATGA
* *
22722284 ATTTGCATGATTTATGTATTATTTTTTTACATGATTATATATTTAAATACATGTTT
1 ATTTGCATGATTTAT-TATTATTTATTTGCATGATTATATATTTAAATACATG-TT
* * *
22722340 ATTTGCATAATTTATATATTA-TTATTTGCATGATTAT-TATTTAATTGCATGTTT
1 ATTTGCATGATTTAT-TATTATTTATTTGCATGATTATATATTTAAATACATG-TT
* * *
22722394 ATTTGCATGATCTA-TATAATTTATTTGCATGATTATATATTT-AAT---TG-C
1 ATTTGCATGATTTATTATTATTTATTTGCATGATTATATATTTAAATACATGTT
* * * *
22722442 A--T-C--G-TTTATATATTA-CTATTTGCATGATTATATATTTAATTGCATATTT
1 ATTTGCATGATTTAT-TATTATTTATTTGCATGATTATATATTTAAATACAT-GTT
* * *
22722491 ATTTGCATGGA-TTA-TATATATTTATTTACATGATTATATATTTAATTGCATGTTT
1 ATTTGCAT-GATTTATTAT-TATTTATTTGCATGATTATATATTTAAATACATG-TT
* * *
22722546 GTTTGCATGATTTA-CATTA-TTAATTGCATGATTATATATTTAA
1 ATTTGCATGATTTATTATTATTTATTTGCATGATTATATATTTAA
22722589 TTATATGATT
Statistics
Matches: 204, Mismatches: 24, Indels: 45
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.01
43 22 0.11
44 6 0.03
45 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 1 0.00
50 2 0.01
51 1 0.00
52 5 0.02
53 43 0.21
54 38 0.19
55 60 0.29
56 19 0.09
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.53
Consensus pattern (54 bp):
ATTTGCATGATTTATTATTATTTATTTGCATGATTATATATTTAAATACATGTT
Found at i:22722345 original size:56 final size:55
Alignment explanation
Indices: 22722284--22722437 Score: 206
Period size: 54 Copynumber: 2.8 Consensus size: 55
22722274 TTTTACATGA
* *
22722284 ATTTGCATGATTTATGTATTATTTTTTTACATGATTATATATTTAAATACATGTTT
1 ATTTGCATGATTTAT-TATTATTTATTTGCATGATTATATATTTAAATACATGTTT
* * *
22722340 ATTTGCATAATTTATATATTA-TTATTTGCATGATTAT-TATTTAATTGCATGTTT
1 ATTTGCATGATTTAT-TATTATTTATTTGCATGATTATATATTTAAATACATGTTT
* *
22722394 ATTTGCATGATCTA-TATAATTTATTTGCATGATTATATATTTAA
1 ATTTGCATGATTTATTATTATTTATTTGCATGATTATATATTTAA
22722438 TTGCATCGTT
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.05
53 16 0.18
54 34 0.39
55 14 0.16
56 19 0.22
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (55 bp):
ATTTGCATGATTTATTATTATTTATTTGCATGATTATATATTTAAATACATGTTT
Found at i:22722396 original size:31 final size:34
Alignment explanation
Indices: 22722360--22722429 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
22722350 TTTATATATT
22722360 ATTATTTGCATGAT-TAT-T-ATTTAATTGCATG
1 ATTATTTGCATGATCTATATAATTTAATTGCATG
* *
22722391 TTTATTTGCATGATCTATATAATTTATTTGCATG
1 ATTATTTGCATGATCTATATAATTTAATTGCATG
22722425 ATTAT
1 ATTAT
22722430 ATATTTAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 13 0.39
32 3 0.09
33 1 0.03
34 16 0.48
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.53
Consensus pattern (34 bp):
ATTATTTGCATGATCTATATAATTTAATTGCATG
Found at i:22722396 original size:34 final size:36
Alignment explanation
Indices: 22722358--22722435 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 36
22722348 AATTTATATA
22722358 TTATTATTTGCATGAT-TAT-T-ATTTAATTGCATG
1 TTATTATTTGCATGATCTATATAATTTAATTGCATG
*
22722391 -T-TTATTTGCATGATCTATATAATTTATTTGCATG
1 TTATTATTTGCATGATCTATATAATTTAATTGCATG
22722425 ATTATATATTT
1 -TTAT-TATTT
22722436 AATTGCATCG
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
31 13 0.35
32 4 0.11
33 1 0.03
34 12 0.32
36 1 0.03
37 1 0.03
38 5 0.14
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.55
Consensus pattern (36 bp):
TTATTATTTGCATGATCTATATAATTTAATTGCATG
Found at i:22722419 original size:22 final size:20
Alignment explanation
Indices: 22722391--22722542 Score: 136
Period size: 20 Copynumber: 7.6 Consensus size: 20
22722381 TAATTGCATG
22722391 TTTATTTGCATGATCTATATAA
1 TTTATTTGCATGAT-TATAT-A
22722413 TTTATTTGCATGATTATATA
1 TTTATTTGCATGATTATATA
* *
22722433 TTTAATTGCATCGTTTATATA
1 TTTATTTGCAT-GATTATATA
22722454 TTACTATTTGCATGATTATATA
1 TT--TATTTGCATGATTATATA
*
22722476 TTTAATTGCAT-ATT-TAT-
1 TTTATTTGCATGATTATATA
* * *
22722493 TTGCA--TGGATTA-TATATA
1 TT-TATTTGCATGATTATATA
*
22722511 TTTATTTACATGATTATATA
1 TTTATTTGCATGATTATATA
*
22722531 TTTAATTGCATG
1 TTTATTTGCATG
22722543 TTTGTTTGCA
Statistics
Matches: 107, Mismatches: 13, Indels: 22
0.75 0.09 0.15
Matches are distributed among these distances:
16 5 0.05
17 7 0.07
18 6 0.06
19 7 0.07
20 35 0.33
21 15 0.14
22 24 0.22
23 8 0.07
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (20 bp):
TTTATTTGCATGATTATATA
Found at i:22722539 original size:98 final size:95
Alignment explanation
Indices: 22722350--22722545 Score: 322
Period size: 97 Copynumber: 2.0 Consensus size: 95
22722340 ATTTGCATAA
* *
22722350 TTTATATATTATTATTTGCATGATTATTATTTAATTGCATGTTTATTTGCATGATCTATATAATT
1 TTTATATATTACTATTTGCATGATTATTATTTAATTGCATATTTATTTGCATGATCTATATAATT
*
22722415 TATTTGCATGATTATATATTTAATTGCATCG
66 TATTTACATGATTATATATTTAATTGCAT-G
22722446 TTTATATATTACTATTTGCATGATTATATATTTAATTGCATATTTATTTGCATGGAT-TATATAT
1 TTTATATATTACTATTTGCATGATTAT-TATTTAATTGCATATTTATTTGCAT-GATCTATATA-
22722510 ATTTATTTACATGATTATATATTTAATTGCATG
63 ATTTATTTACATGATTATATATTTAATTGCATG
22722543 TTT
1 TTT
22722546 GTTTGCATGA
Statistics
Matches: 94, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
96 26 0.28
97 34 0.36
98 34 0.36
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.54
Consensus pattern (95 bp):
TTTATATATTACTATTTGCATGATTATTATTTAATTGCATATTTATTTGCATGATCTATATAATT
TATTTACATGATTATATATTTAATTGCATG
Found at i:22722573 original size:151 final size:151
Alignment explanation
Indices: 22722313--22722590 Score: 418
Period size: 151 Copynumber: 1.8 Consensus size: 151
22722303 TATTTTTTTA
* *
22722313 CATGATTATATATTTAAATACATGTTTATTTGCATAATTTATATATTATTATTTGCATGATTATT
1 CATGATTATATATTTAAATACATATTTATTTGCATAATTTATATATTATTATTTACATGATTATT
* *
22722378 ATTTAATTGCATGTTTATTTGCATGATCTATATAATTTATTTGCATGATTATATATTTAATTGCA
66 ATTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATTGCA
22722443 TCGTTTATATATTACTATTTG
131 TCGTTTATATATTACTATTTG
* * *
22722464 CATGATTATATATTTAATTGCATATTTATTTGCATGGA-TTATATA-TATTTATTTACATGATTA
1 CATGATTATATATTTAAATACATATTTATTTGCAT-AATTTATATATTA-TTATTTACATGATTA
* * *
22722527 TATATTTAATTGCATGTTTGTTTGCATGATTTACATTA-TTAATTGCATGATTATATATTTAATT
64 T-TATTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATT
22722591 ATATGATTAT
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
150 2 0.02
151 79 0.69
152 33 0.29
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (151 bp):
CATGATTATATATTTAAATACATATTTATTTGCATAATTTATATATTATTATTTACATGATTATT
ATTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATTGCA
TCGTTTATATATTACTATTTG
Found at i:22722649 original size:152 final size:150
Alignment explanation
Indices: 22722313--22722667 Score: 402
Period size: 151 Copynumber: 2.3 Consensus size: 150
22722303 TATTTTTTTA
* * *
22722313 CATGATTATATATTTAAATACATGTTTATTTGCATAATTTATATATTATTATTTGCATGATTATT
1 CATGATTATATATTT-AATTCATATTTATTTGCATAATTTATATATTATTATTTACATGATTATT
* * *
22722378 ATTTAATTGCATGTTTATTTGCATGATCTATATAATTTATTTGCATGATTATATATTTAATTGCA
65 ATTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATTACA
*
22722443 TCGTTTATATATTACTATTTG
130 TCGATTATATATTACTATTTG
*
22722464 CATGATTATATATTTAATTGCATATTTATTTGCATGGA-TTATATA-TATTTATTTACATGATTA
1 CATGATTATATATTTAATT-CATATTTATTTGCAT-AATTTATATATTA-TTATTTACATGATTA
* * *
22722527 TATATTTAATTGCATGTTTGTTTGCATGATTTACATTA-TTAATTGCATGATTATATATTTAATT
63 T-TATTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATT
* *
22722591 ATAT-GATTAT-TAATTCATTTATTTG
127 ACATCGATTATAT-ATT-A-CTATTTG
** * *
22722616 TGTGATTATATGATTATTAA-T-ATATTTATTTGCAT-AGTTATTTATTATTATT
1 CATGATTATAT-A-T-TTAATTCATATTTATTTGCATAATTTATATATTATTATT
22722668 ATTATTATTG
Statistics
Matches: 176, Mismatches: 16, Indels: 24
0.81 0.07 0.11
Matches are distributed among these distances:
149 1 0.01
150 14 0.08
151 90 0.51
152 64 0.36
153 1 0.01
154 2 0.01
155 4 0.02
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (150 bp):
CATGATTATATATTTAATTCATATTTATTTGCATAATTTATATATTATTATTTACATGATTATTA
TTTAATTGCATGTTTATTTGCATGATCTACATAATTTAATTGCATGATTATATATTTAATTACAT
CGATTATATATTACTATTTG
Found at i:22722665 original size:3 final size:3
Alignment explanation
Indices: 22722657--22722689 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
22722647 GCATAGTTAT
*
22722657 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
22722690 CATAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TTA
Done.