Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34

Warning! 82000 characters in sequence are not A, C, G, or T


File 109 of 109

Found at i:22722725 original size:24 final size:24

Alignment explanation


    Indices: 22722692--22722752  Score: 79
    Period size: 24  Copynumber: 2.5  Consensus size: 24

   22722682 TATTATTACA

                *                *  
   22722692 TAATTTTATAT-TTATTGCATGAT
          1 TAATATTATATGTTATTGCATAAT

              *                      
   22722715 GTGATATTATATGTTATTGCATAAT
          1 -TAATATTATATGTTATTGCATAAT

                         
   22722740 TAATATTATATGT
          1 TAATATTATATGT

   22722753 GAAGAAAATT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  24   21  0.66
  25   11  0.34

ACGTcount: A:0.33, C:0.03, G:0.11, T:0.52


Consensus pattern (24 bp):   
TAATATTATATGTTATTGCATAAT

Done.