Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 19 of 109
Found at i:3180114 original size:22 final size:23
Alignment explanation
Indices: 3180065--3180111 Score: 80
Period size: 21 Copynumber: 2.1 Consensus size: 23
3180055 TTTGATTCGA
3180065 TTTAAAATTAATAAAATATTATT
1 TTTAAAATTAATAAAATATTATT
3180088 TTTAAAA-T-ATAAAATATTATT
1 TTTAAAATTAATAAAATATTATT
3180109 TTT
1 TTT
3180112 TAATATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 16 0.67
22 1 0.04
23 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTAAAATTAATAAAATATTATT
Found at i:3180116 original size:20 final size:21
Alignment explanation
Indices: 3180065--3180120 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
3180055 TTTGATTCGA
3180065 TTTAAAATTAATAAAATATTATT
1 TTTAAAA-T-ATAAAATATTATT
3180088 TTTAAAATATAAAATATTATT
1 TTTAAAATATAAAATATTATT
*
3180109 TTT-TAATATAAA
1 TTTAAAATATAAA
3180121 TATAAAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 8 0.25
21 16 0.50
22 1 0.03
23 7 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTAAAATATAAAATATTATT
Found at i:3180141 original size:16 final size:16
Alignment explanation
Indices: 3180120--3180157 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
3180110 TTTAATATAA
*
3180120 ATATAAA-ATTAAATAT
1 ATATAAATATAAAAT-T
3180136 ATATAAATATAAAATT
1 ATATAAATATAAAATT
3180152 ATATAA
1 ATATAA
3180158 TTAATTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATAAATATAAAATT
Found at i:3181417 original size:43 final size:42
Alignment explanation
Indices: 3181360--3181445 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 42
3181350 AGCAAAGAAC
* *
3181360 CCAACAAGTGATTCTCCTAGACCCGACCAAAAAAAAAAGGAA
1 CCAACAAGTAATTCTCCTAGACCCGACAAAAAAAAAAAGGAA
* * *
3181402 CCAACCAAGTAATTCTCTTTGACCTGACAAAAAAAAAAAGGAA
1 CCAA-CAAGTAATTCTCCTAGACCCGACAAAAAAAAAAAGGAA
3181445 C
1 C
3181446 GAACGGGCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
42 4 0.11
43 34 0.89
ACGTcount: A:0.48, C:0.24, G:0.13, T:0.15
Consensus pattern (42 bp):
CCAACAAGTAATTCTCCTAGACCCGACAAAAAAAAAAAGGAA
Found at i:3193362 original size:19 final size:18
Alignment explanation
Indices: 3193340--3193389 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
3193330 TTGGTTTGGC
3193340 ATTTTTCATTATTTATTTA
1 ATTTTTCATT-TTTATTTA
* *
3193359 ATTTTTTATTTGTTATTTT
1 ATTTTTCATTT-TTATTTA
3193378 ATTTTTC-TTTTT
1 ATTTTTCATTTTT
3193390 TTAATTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 2 0.07
18 4 0.15
19 21 0.78
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (18 bp):
ATTTTTCATTTTTATTTA
Found at i:3193449 original size:24 final size:24
Alignment explanation
Indices: 3193406--3193476 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 24
3193396 TAAAGTTTTT
* *
3193406 AAAATTAATTTGTTACAATTATTTA
1 AAAATTAATTT-ATATAATTATTTA
*
3193431 AAAATTAATTTATATAATTATCTA
1 AAAATTAATTTATATAATTATTTA
3193455 ATAAATTAA-TTA-ATAATTATTT
1 A-AAATTAATTTATATAATTATTT
3193477 GACATAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.22
24 14 0.34
25 18 0.44
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (24 bp):
AAAATTAATTTATATAATTATTTA
Found at i:3195997 original size:14 final size:15
Alignment explanation
Indices: 3195972--3196009 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
3195962 TAGTTATAAT
3195972 TTTATAATTTATATA
1 TTTATAATTTATATA
*
3195987 TTTAT-ATTTATATT
1 TTTATAATTTATATA
*
3196001 TTTAAAATT
1 TTTATAATT
3196010 AAATATTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTATAATTTATATA
Found at i:3196015 original size:22 final size:22
Alignment explanation
Indices: 3195990--3196034 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3195980 TTATATATTT
*
3195990 ATATTTATATTTTTAAAATTAA
1 ATATTTATATCTTTAAAATTAA
*
3196012 ATATTTGTATCTTTAAAATTAA
1 ATATTTATATCTTTAAAATTAA
3196034 A
1 A
3196035 GATAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
ATATTTATATCTTTAAAATTAA
Found at i:3196050 original size:14 final size:15
Alignment explanation
Indices: 3196026--3196054 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
3196016 TTGTATCTTT
3196026 AAAATTAAAGATAAA
1 AAAATTAAAGATAAA
3196041 AAAATT-AAGATAAA
1 AAAATTAAAGATAAA
3196055 TAATATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (15 bp):
AAAATTAAAGATAAA
Found at i:3199984 original size:22 final size:22
Alignment explanation
Indices: 3199959--3200001 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
3199949 TATATATTTA
*
3199959 TATTTGTATCTCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
3199981 TATTTGTATCCCTAAAATTAA
1 TATTTGTATCCCTAAAATTAA
3200002 AGACAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:3204140 original size:22 final size:22
Alignment explanation
Indices: 3204112--3204155 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3204102 CTAAATCTTC
3204112 CTTAATTCTAG-GAATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
3204134 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
3204156 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:3207986 original size:22 final size:22
Alignment explanation
Indices: 3207960--3208003 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3207950 CCAAATCTTC
3207960 CTTAATTCTAG-GAATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
3207982 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
3208004 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:3209521 original size:22 final size:22
Alignment explanation
Indices: 3209496--3209539 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
3209486 ATTTTTTGTC
*
3209496 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
3209518 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
3209540 TAAATACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:3209551 original size:22 final size:22
Alignment explanation
Indices: 3209503--3209551 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
3209493 GTCCTTAATT
* * *
3209503 CTAGGGATACAAATACTTAATT
1 CTAGAGATACAAATACTAAATA
3209525 CTAGAGATACAAATA-TAAATA
1 CTAGAGATACAAATACTAAATA
3209546 CATAGA
1 C-TAGA
3209552 TTACAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (22 bp):
CTAGAGATACAAATACTAAATA
Found at i:3210076 original size:261 final size:260
Alignment explanation
Indices: 3209597--3210118 Score: 787
Period size: 261 Copynumber: 2.0 Consensus size: 260
3209587 TTCACACTCC
* *
3209597 CCCTTAAGCTGGTGAATAGGTGTTTTCTATTCCCAACTTGGAAATAATTTCTTGAAATGTTGCAC
1 CCCTTAAGCTAGTGAATAGGTGTTTTCTATTCCCAACTTGAAAATAATTTCTTGAAATGTTGCAC
* * * *
3209662 TACTGAAACTTTTAGTCAACATATTTACAAGTTGACCCTTGGTTGATACATAAGGTGTACAAATT
66 TACTGAAACCTTTAGTCAACACATCTACAAGTTAACCCTTGGTTGATACATAAGGTGTACAAATT
3209727 AACCCACTGTCTAGTTTTACCTTTATGAAATGCTAGTCTACTTCAATGTGTTTTGTTCTATCATG
131 AACCCACTGTCTAGTTTTACCTTTATGAAATGCTAGTCTACTTCAATGTGTTTTGTTCTATCATG
* * * * *
3209792 TTACACAGGATTGTACGCAATGCTTATTGCAAACTTGTTATCACAATAGAGTTTCATTGGTCCAT
196 TTACACAAGATTGTACACAATGCTTATTGCAAACTTGTTATCACAATAAAGTCTCATTGATCCAT
* *
3209857 CCCTTCAAGCTAGTGAATAGGTATTTT-TCATTCTCAACTTGAAAATAATTTCTTGAAATGTTGC
1 CCCTT-AAGCTAGTGAATAGGTGTTTTCT-ATTCCCAACTTGAAAATAATTTCTTGAAATGTTGC
* * **
3209921 ACTACTGAGACCTTTGGTCAACACATCTGTAAGTTAACCCTTGGTTGATACATAAGGTGTACAAA
64 ACTACTGAAACCTTTAGTCAACACATCTACAAGTTAACCCTTGGTTGATACATAAGGTGTACAAA
** * *
3209986 TTAACCCACTGTCTAGTTTTTTCTTTATGAAATG-TCGGTCTACTTCAATGTGTTTTGTTCTGTC
129 TTAACCCACTGTCTAGTTTTACCTTTATGAAATGCT-AGTCTACTTCAATGTGTTTTGTTCTATC
* * *
3210050 ATGTTGCACAAGATTGTGCACAATGCTTATTGCAGACTTGTTATCACAATAAAGTCTCATTGATC
193 ATGTTACACAAGATTGTACACAATGCTTATTGCAAACTTGTTATCACAATAAAGTCTCATTGATC
3210115 CAT
258 CAT
3210118 C
1 C
3210119 TCACTTGATC
Statistics
Matches: 235, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
260 7 0.03
261 228 0.97
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (260 bp):
CCCTTAAGCTAGTGAATAGGTGTTTTCTATTCCCAACTTGAAAATAATTTCTTGAAATGTTGCAC
TACTGAAACCTTTAGTCAACACATCTACAAGTTAACCCTTGGTTGATACATAAGGTGTACAAATT
AACCCACTGTCTAGTTTTACCTTTATGAAATGCTAGTCTACTTCAATGTGTTTTGTTCTATCATG
TTACACAAGATTGTACACAATGCTTATTGCAAACTTGTTATCACAATAAAGTCTCATTGATCCAT
Found at i:3213574 original size:25 final size:25
Alignment explanation
Indices: 3213513--3213575 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
3213503 TAGAATGGCT
* * *
3213513 ATGAAGGCCTTAACAGGGTTCGACA
1 ATGAAGGCCTAAACAGAGTTCAACA
* **
3213538 ATAAAGATCTAAACAGAGTTCAACA
1 ATGAAGGCCTAAACAGAGTTCAACA
3213563 ATGAAGGCCTAAA
1 ATGAAGGCCTAAA
3213576 ATAAAAGTCA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.43, C:0.17, G:0.21, T:0.19
Consensus pattern (25 bp):
ATGAAGGCCTAAACAGAGTTCAACA
Found at i:3213846 original size:22 final size:22
Alignment explanation
Indices: 3213821--3213864 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3213811 ATTTTTTGTC
3213821 CTTAATTCTA-AGAATACAAATA
1 CTTAATTCTAGAG-ATACAAATA
3213843 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
3213865 TAAATACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:3213876 original size:22 final size:22
Alignment explanation
Indices: 3213834--3213876 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
3213824 AATTCTAAGA
* *
3213834 ATACAAATACTTAATTCTAGAG
1 ATACAAATACTAAATACTAGAG
3213856 ATACAAATA-TAAATACATAGA
1 ATACAAATACTAAATAC-TAGA
3213877 TTACAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (22 bp):
ATACAAATACTAAATACTAGAG
Found at i:3221987 original size:29 final size:29
Alignment explanation
Indices: 3221935--3222005 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
3221925 AAATAATCAT
3221935 TAAATTATAATGAAATGTTCAATTTGATA-C
1 TAAATTATAA--AAATGTTCAATTTGATATC
*
3221965 TTAAATTTTAAAAAT-TTCTAATTTGATATC
1 -TAAATTATAAAAATGTTC-AATTTGATATC
3221995 TAAATTATAAA
1 TAAATTATAAA
3222006 TTTATTAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
28 3 0.08
29 23 0.64
30 1 0.03
31 9 0.25
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (29 bp):
TAAATTATAAAAATGTTCAATTTGATATC
Found at i:3222414 original size:18 final size:18
Alignment explanation
Indices: 3222393--3222462 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3222383 GAACAATCAT
3222393 TTATTTATGTTCAAATAA
1 TTATTTATGTTCAAATAA
**
3222411 TTA-TTACCATTCAAATAA
1 TTATTTA-TGTTCAAATAA
*
3222429 TTATTCTATTTGTCATATAATAA
1 TTATT-TATGT-TC--A-AATAA
3222452 TTATTTATGTT
1 TTATTTATGTT
3222463 TAAACATGAT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
17 3 0.08
18 15 0.38
19 2 0.05
20 4 0.10
21 1 0.03
22 5 0.12
23 10 0.25
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (18 bp):
TTATTTATGTTCAAATAA
Found at i:3224898 original size:14 final size:14
Alignment explanation
Indices: 3224860--3224898 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
3224850 TTAAATGGCT
3224860 AGAAAAAATAAATA
1 AGAAAAAATAAATA
* *
3224874 AGATAATATAAATA
1 AGAAAAAATAAATA
*
3224888 ATAAAAAATAA
1 AGAAAAAATAA
3224899 TTTTAGATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (14 bp):
AGAAAAAATAAATA
Found at i:3226181 original size:60 final size:58
Alignment explanation
Indices: 3226091--3226264 Score: 168
Period size: 59 Copynumber: 2.9 Consensus size: 58
3226081 TTCAATAATC
* * * * * **
3226091 AAAAAAATGGAAAGGGATTATTTAATGTGTTTTTAGTTAGAAACACATTGAATAATCTCTA
1 AAAAAAATGG-AAGAGATTATTCAAGGTGTTTTTAGCTAGAAACACCTTGAATAA--TAAA
* * * * * *
3226152 AAAAAAATGGAAGAGATTATTGAAGGTGTTTTTAACGAAAAATACCTTTAATAATAAA
1 AAAAAAATGGAAGAGATTATTCAAGGTGTTTTTAGCTAGAAACACCTTGAATAATAAA
* * *
3226210 AAAAAAATCGAAGGAGATTATTCAAGGTATTTTTTGCTAGAAACACCTTGAATAA
1 AAAAAAATGGAA-GAGATTATTCAAGGTGTTTTTAGCTAGAAACACCTTGAATAA
3226265 CCCCATTCAA
Statistics
Matches: 91, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
58 13 0.14
59 34 0.37
60 34 0.37
61 10 0.11
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.31
Consensus pattern (58 bp):
AAAAAAATGGAAGAGATTATTCAAGGTGTTTTTAGCTAGAAACACCTTGAATAATAAA
Found at i:3226193 original size:119 final size:118
Alignment explanation
Indices: 3226045--3226264 Score: 255
Period size: 119 Copynumber: 1.8 Consensus size: 118
3226035 TTTTTATAAG
* * * * *
3226045 GAGATTATTTAAGGCATTTTTTACAAAAAAAATGCCTTCAATAAT-CAAAAAAATGGAAAGG-GA
1 GAGATTATTGAAGGCA-TTTTTA-ACAAAAAATACCTTCAATAATAAAAAAAAATCG-AAGGAGA
* * * *
3226108 TTATTTAATGTGTTTTTAGTTAGAAACACATTGAATAATCTCTAAAAAAAATGGAA
63 TTATTCAAGGTATTTTTAGCTAGAAACACATTGAATAATCTCTAAAAAAAATGGAA
** * *
3226164 GAGATTATTGAAGGTGTTTTTAACGAAAAATACCTTTAATAATAAAAAAAAAATCGAAGGAGATT
1 GAGATTATTGAAGGCATTTTTAACAAAAAATACCTTCAATAAT-AAAAAAAAATCGAAGGAGATT
* *
3226229 ATTCAAGGTATTTTTTGCTAGAAACACCTTGAATAA
65 ATTCAAGGTATTTTTAGCTAGAAACACATTGAATAA
3226265 CCCCATTCAA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
117 17 0.20
118 10 0.12
119 56 0.67
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.32
Consensus pattern (118 bp):
GAGATTATTGAAGGCATTTTTAACAAAAAATACCTTCAATAATAAAAAAAAATCGAAGGAGATTA
TTCAAGGTATTTTTAGCTAGAAACACATTGAATAATCTCTAAAAAAAATGGAA
Found at i:3226504 original size:63 final size:62
Alignment explanation
Indices: 3226406--3226611 Score: 179
Period size: 62 Copynumber: 3.3 Consensus size: 62
3226396 AAAATGGAGA
* ** * *
3226406 GGATTATTCGAGACATTTTTAGCTAGAAATGCCTTGAATAACCTCATTCAATTTTTTGTAAG
1 GGATTATTCAAGTTATTTTTTGCGAGAAATGCCTTGAATAACCTCATTCAATTTTTTGTAAG
** ***** *
3226468 GGATTATTCAAGTTATTTTTTGGCCGA-AAATGCCTTGAATAA--TC-TAAAAAAAAATGGAATG
1 GGATTATTCAAGTTATTTTTT-G-CGAGAAATGCCTTGAATAACCTCATTCAATTTTTTGTAA-G
* * ** *
3226529 AGATTATTGAAGGCATTTTTTGCTAGAAATGCCTTGAATAACGCT-ATTCAATTTTTTGTAAG
1 GGATTATTCAAGTTATTTTTTGCGAGAAATGCCTTGAATAAC-CTCATTCAATTTTTTGTAAG
3226591 GGATTATTCAAGTTATTTTTT
1 GGATTATTCAAGTTATTTTTT
3226612 TGTAAAAAAC
Statistics
Matches: 106, Mismatches: 30, Indels: 16
0.70 0.20 0.11
Matches are distributed among these distances:
59 2 0.02
60 23 0.22
61 20 0.19
62 35 0.33
63 24 0.23
64 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (62 bp):
GGATTATTCAAGTTATTTTTTGCGAGAAATGCCTTGAATAACCTCATTCAATTTTTTGTAAG
Found at i:3226566 original size:182 final size:181
Alignment explanation
Indices: 3226138--3226569 Score: 440
Period size: 182 Copynumber: 2.4 Consensus size: 181
3226128 TAGAAACACA
* * * * *
3226138 TTGAATAATCTCTAAAAAAAATGGAAGAGATTATTGAAGGTGTTTTTAACGAAAAATACCTTTAA
1 TTGAATAATCT-AAAAAAAAATGGAAGAGATTATTGAAGGTGTTTTTTACTAGAAATACCTTGAA
** *
3226203 TAATAAAAAAAAAATCGAAGGAGATTATTCAAGGTATTTTTTGCTAGAAACACCTTGAATAACCC
65 TAATAAAAAAAAAATCGAAGGAGATTATTCAAGACATTTTTAGCTAGAAACACCTTGAATAACCC
3226268 CATTCAATTTTTGGTAAAAAAATATTCAAGGTATTTTCTAACCAAAAACGCC
130 CATTCAATTTTTGGTAAAAAAATATTCAAGGTATTTTCTAACCAAAAACGCC
**** **
3226320 TTGAATAATCCCCTAAAAAA-GGAAAGAGATTATTGAATATGTTTTTTTA-TAGAAAATACCTTG
1 TTGAATAATCTAAAAAAAAATGG-AAGAGATTATTGAAGGTG-TTTTTTACTAG-AAATACCTTG
*** * * **
3226383 AATAATTTTTAAAAAAAT-GGA-GAGGATTATTCGAGACATTTTTAGCTAGAAATGCCTTGAATA
63 AATAA-TAAAAAAAAAATCGAAGGA-GATTATTCAAGACATTTTTAGCTAGAAACACCTTGAATA
* * *** * * * ** * *
3226446 ACCTCATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTGGCCGAAAATGCC
126 ACCCCATTCAATTTTTGGTAAAAAAATATTCAAGGTATTTTCTAACCAAAAACGCC
** * *
3226502 TTGAATAATCTAAAAAAAAATGGAATGAGATTATTGAAGGCATTTTTTGCTAGAAATGCCTTGAA
1 TTGAATAATCTAAAAAAAAATGGAA-GAGATTATTGAAGGTGTTTTTTACTAGAAATACCTTGAA
3226567 TAA
65 TAA
3226570 CGCTATTCAA
Statistics
Matches: 200, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
180 2 0.01
181 25 0.12
182 147 0.74
183 26 0.13
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (181 bp):
TTGAATAATCTAAAAAAAAATGGAAGAGATTATTGAAGGTGTTTTTTACTAGAAATACCTTGAAT
AATAAAAAAAAAATCGAAGGAGATTATTCAAGACATTTTTAGCTAGAAACACCTTGAATAACCCC
ATTCAATTTTTGGTAAAAAAATATTCAAGGTATTTTCTAACCAAAAACGCC
Found at i:3226658 original size:62 final size:58
Alignment explanation
Indices: 3226592--3226704 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 58
3226582 TTTTGTAAGG
* *
3226592 GATTATTCAA-GTTATTTTTTTGTAAAAAACGTCTTGAATAATCTCCAAAAAAAATTGGAAGA
1 GATTATTCAATG-TA-TTTTTTGT-AAAAACG-CTTAAATAATCT-AAAAAAAAATTGGAAGA
* *
3226654 GATTATTGAATGTATTTTTTGTCAAAACGCTTAAATAATCTAAAAAAAAAT
1 GATTATTCAATGTATTTTTTGTAAAAACGCTTAAATAATCTAAAAAAAAAT
3226705 AGAGGGGATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
58 9 0.20
59 11 0.24
60 6 0.13
61 8 0.17
62 11 0.24
63 1 0.02
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (58 bp):
GATTATTCAATGTATTTTTTGTAAAAACGCTTAAATAATCTAAAAAAAAATTGGAAGA
Found at i:3226672 original size:123 final size:123
Alignment explanation
Indices: 3226378--3226672 Score: 384
Period size: 123 Copynumber: 2.4 Consensus size: 123
3226368 ATAGAAAATA
* ** *
3226378 CCTTGAATAATTTTTAAAAAAATGG-A-GAGGATTATTCG-AGACATTTTTAGCTAGAAATGCCT
1 CCTTGAATAATCTAAAAAAAAATGGAATGA-GATTATT-GAAGGCATTTTTAGCTAGAAATGCCT
** *
3226440 TGAATAACCTCATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTGGCCGAAAATG
64 TGAATAACCTCATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTGGCAAAAAACG
*
3226500 CCTTGAATAATCTAAAAAAAAATGGAATGAGATTATTGAAGGCATTTTTTGCTAGAAATGCCTTG
1 CCTTGAATAATCTAAAAAAAAATGGAATGAGATTATTGAAGGCATTTTTAGCTAGAAATGCCTTG
* *
3226565 AATAACGCT-ATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTTGTAAAAAACG
66 AATAAC-CTCATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTGGCAAAAAACG
* * * *
3226623 TCTTGAATAATCTCCAAAAAAAATTGGAA-GAGATTATTGAATGTATTTTT
1 CCTTGAATAATCT--AAAAAAAAATGGAATGAGATTATTGAAGGCATTTTT
3226673 TGTCAAAACG
Statistics
Matches: 153, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
122 23 0.15
123 94 0.61
124 23 0.15
125 13 0.08
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (123 bp):
CCTTGAATAATCTAAAAAAAAATGGAATGAGATTATTGAAGGCATTTTTAGCTAGAAATGCCTTG
AATAACCTCATTCAATTTTTTGTAAGGGATTATTCAAGTTATTTTTTGGCAAAAAACG
Found at i:3226719 original size:57 final size:60
Alignment explanation
Indices: 3226588--3226729 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 60
3226578 AATTTTTTGT
* * * * *
3226588 AAGGGATTATTCAAGTTATTTTTTTGTAAAAAACGTCTTGAATAATCTCCAAAAAAAATTGG
1 AAGGGATTATTGAAGATA-TTTTTTGTAAAAAACGTCTTAAATAATCT-CAAAAAAAAATAG
* *
3226650 AAGAGATTATTGAATG-TATTTTTTGT-CAAAACG-CTTAAATAATCT-AAAAAAAAATAG
1 AAGGGATTATTGAA-GATATTTTTTGTAAAAAACGTCTTAAATAATCTCAAAAAAAAATAG
*
3226707 AGGGGATTATTGAAGATATTTTT
1 AAGGGATTATTGAAGATATTTTT
3226730 AGCCAAAAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
56 1 0.01
57 29 0.41
59 11 0.16
60 6 0.09
61 8 0.11
62 14 0.20
63 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (60 bp):
AAGGGATTATTGAAGATATTTTTTGTAAAAAACGTCTTAAATAATCTCAAAAAAAAATAG
Found at i:3227004 original size:34 final size:34
Alignment explanation
Indices: 3226961--3227025 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
3226951 GCATTTTGGA
* * *
3226961 TCAAATCCCTAAACTTTTTGTTTGATTTGTTAGG
1 TCAAATCCCTAAACTTTCTATCTGATTTGTTAGG
3226995 TCAAATCCCTAAACTTTCTATCTGATTTGTT
1 TCAAATCCCTAAACTTTCTATCTGATTTGTT
3227026 GCATTTCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.46
Consensus pattern (34 bp):
TCAAATCCCTAAACTTTCTATCTGATTTGTTAGG
Found at i:3228166 original size:27 final size:26
Alignment explanation
Indices: 3228104--3228168 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
3228094 GACATTAATC
*
3228104 TTTAAAAATATTATTTTGATAAAAAT
1 TTTAAAAATATTATTTTAATAAAAAT
* *
3228130 TATTATAAAT-TTAATTTTAATTTAAAAT
1 T-TTAAAAATATT-ATTTTAA-TAAAAAT
3228158 TTTAAAAATAT
1 TTTAAAAATAT
3228169 AAAATTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 3 0.10
27 20 0.65
28 8 0.26
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
TTTAAAAATATTATTTTAATAAAAAT
Found at i:3229925 original size:21 final size:20
Alignment explanation
Indices: 3229901--3229948 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
3229891 ATTATTTTAT
*
3229901 TATTTTAATTGTTATAAAATA
1 TATTTTAATT-TAATAAAATA
*
3229922 TATTTAAATTTAATAAAATA
1 TATTTTAATTTAATAAAATA
3229942 T-TTTTAA
1 TATTTTAA
3229949 AAAATATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 5 0.21
20 10 0.42
21 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TATTTTAATTTAATAAAATA
Found at i:3230018 original size:20 final size:21
Alignment explanation
Indices: 3229979--3230020 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
3229969 AATATTTGAG
*
3229979 ATTATAAAAATTTAATAATTT
1 ATTATAAAAATTTAAAAATTT
*
3230000 ATTATGAAAA-TTAAAAATTT
1 ATTATAAAAATTTAAAAATTT
3230020 A
1 A
3230021 ACACCTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTATAAAAATTTAAAAATTT
Found at i:3233794 original size:23 final size:23
Alignment explanation
Indices: 3233765--3233811 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
3233755 TAATATTATT
3233765 TAATTTAATCTTA-TTTATAATAA
1 TAATTT-ATCTTATTTTATAATAA
* *
3233788 TAATTTATTTTATTTTATCATAA
1 TAATTTATCTTATTTTATAATAA
3233811 T
1 T
3233812 TTTATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (23 bp):
TAATTTATCTTATTTTATAATAA
Found at i:3243080 original size:25 final size:23
Alignment explanation
Indices: 3243039--3243090 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
3243029 AGGTATTTGT
3243039 AACTGTGGAAAAACTAAGAAATAA
1 AACTGTGGAAAAACTAA-AAATAA
*
3243063 AACTGTGTGAAAAACTAAAAGTAA
1 AACTGTG-GAAAAACTAAAAATAA
3243087 AACT
1 AACT
3243091 AAATGTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (23 bp):
AACTGTGGAAAAACTAAAAATAA
Found at i:3247029 original size:25 final size:25
Alignment explanation
Indices: 3246990--3247052 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
3246980 TAGAATAGCT
*
3246990 ATGAAGGCCTTAACAGGGTTCGACA
1 ATGAAGGCCTAAACAGGGTTCGACA
*
3247015 ATGAAGGTCTAAACAGGGTTCGACA
1 ATGAAGGCCTAAACAGGGTTCGACA
3247040 ATGAAGGCCTAAA
1 ATGAAGGCCTAAA
3247053 ATAGAAGTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (25 bp):
ATGAAGGCCTAAACAGGGTTCGACA
Found at i:3247155 original size:25 final size:25
Alignment explanation
Indices: 3247117--3247165 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
3247107 TCTAATACCA
3247117 TGTGAAAAAACTAAAAAATAAAACTG
1 TGTGAAAAAACT-AAAAATAAAACTG
*
3247143 TGTG-AAAAACTAAAAGTAAAACT
1 TGTGAAAAAACTAAAAATAAAACT
3247166 AAATGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.50
25 7 0.32
26 4 0.18
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (25 bp):
TGTGAAAAAACTAAAAATAAAACTG
Found at i:3247339 original size:22 final size:22
Alignment explanation
Indices: 3247311--3247355 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
3247301 TTTTTTTGTC
*
3247311 CTTAATTATAGGGATACAAATA
1 CTTAATTATAGAGATACAAATA
* *
3247333 CTTAATTCTAGAGATGCAAATA
1 CTTAATTATAGAGATACAAATA
3247355 C
1 C
3247356 AAATACATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (22 bp):
CTTAATTATAGAGATACAAATA
Found at i:3252820 original size:2 final size:2
Alignment explanation
Indices: 3252815--3252842 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3252805 ATATATATAT
3252815 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
3252843 GTATGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3253681 original size:12 final size:12
Alignment explanation
Indices: 3253664--3253689 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3253654 ATGTTTGGGA
3253664 AGAGAGAAAGAG
1 AGAGAGAAAGAG
3253676 AGAGAGAAAGAG
1 AGAGAGAAAGAG
3253688 AG
1 AG
3253690 GTATTAGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (12 bp):
AGAGAGAAAGAG
Found at i:3264741 original size:29 final size:28
Alignment explanation
Indices: 3264707--3264776 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
3264697 CAAAAGCTAG
* *
3264707 AAAAAAGAGAAGAA-GAGGGAGAAAGAAAA
1 AAAAAAAAAAAGAATGA-GGAG-AAGAAAA
3264736 AAAAAAAAAAAGAATGAGGAGAAGAAAA
1 AAAAAAAAAAAGAATGAGGAGAAGAAAA
3264764 AAAGAGAAAAAAA
1 AAA-A-AAAAAAA
3264777 AAGATAAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 10 0.28
29 17 0.47
30 9 0.25
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.01
Consensus pattern (28 bp):
AAAAAAAAAAAGAATGAGGAGAAGAAAA
Found at i:3267172 original size:16 final size:16
Alignment explanation
Indices: 3267153--3267230 Score: 59
Period size: 16 Copynumber: 4.8 Consensus size: 16
3267143 GCTTAGGGTT
3267153 TTTTAGAGTTTTAGGA
1 TTTTAGAGTTTTAGGA
*
3267169 TTTTA-AGGTTTTACGGT
1 TTTTAGA-GTTTTA-GGA
* *
3267186 TTTTAGGGGTTTTAGGT
1 TTTTA-GAGTTTTAGGA
* **
3267203 TTTTAGTGTTTGGGGA
1 TTTTAGAGTTTTAGGA
*
3267219 TTTTAGGGTTTT
1 TTTTAGAGTTTT
3267231 TAGGGGTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.02
16 28 0.56
17 15 0.30
18 6 0.12
ACGTcount: A:0.15, C:0.01, G:0.29, T:0.54
Consensus pattern (16 bp):
TTTTAGAGTTTTAGGA
Found at i:3267172 original size:17 final size:15
Alignment explanation
Indices: 3267152--3267213 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 15
3267142 TGCTTAGGGT
3267152 TTTTTAGAGTTTTAGG
1 TTTTTAG-GTTTTAGG
*
3267168 ATTTTAAGGTTTTACGG
1 -TTTTTAGGTTTTA-GG
3267185 TTTTTAGGGGTTTTAGG
1 TTTTTA--GGTTTTAGG
3267202 TTTTTAGTGTTT
1 TTTTTAG-GTTT
3267214 GGGGATTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
15 1 0.03
16 15 0.38
17 16 0.41
18 7 0.18
ACGTcount: A:0.16, C:0.02, G:0.26, T:0.56
Consensus pattern (15 bp):
TTTTTAGGTTTTAGG
Found at i:3267180 original size:25 final size:24
Alignment explanation
Indices: 3267152--3267234 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
3267142 TGCTTAGGGT
3267152 TTTTTAGAGTTTTAGGATTTTAAGG
1 TTTTTAG-GTTTTAGGATTTTAAGG
*
3267177 -TTTTACGGTTTTTAGGGGTTTT-AGG
1 TTTTTA-GG-TTTTA-GGATTTTAAGG
** *
3267202 TTTTTAGTGTTTGGGGATTTTAGGG
1 TTTTTAG-GTTTTAGGATTTTAAGG
3267227 TTTTTAGG
1 TTTTTAGG
3267235 GGTTTTAAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
24 13 0.28
25 22 0.47
26 12 0.26
ACGTcount: A:0.16, C:0.01, G:0.30, T:0.53
Consensus pattern (24 bp):
TTTTTAGGTTTTAGGATTTTAAGG
Found at i:3267198 original size:9 final size:9
Alignment explanation
Indices: 3267175--3267241 Score: 52
Period size: 9 Copynumber: 7.8 Consensus size: 9
3267165 AGGATTTTAA
*
3267175 GGTTTTACG
1 GGTTTTAGG
*
3267184 GTTTTTAGG
1 GGTTTTAGG
3267193 GGTTTTA-G
1 GGTTTTAGG
*
3267201 GTTTTTA-G
1 GGTTTTAGG
*
3267209 TG-TTT-GG
1 GGTTTTAGG
3267216 GGATTTTAGG
1 GG-TTTTAGG
*
3267226 GTTTTTAGG
1 GGTTTTAGG
3267235 GGTTTTA
1 GGTTTTA
3267242 AGTTTTTTAG
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
7 5 0.11
8 8 0.18
9 29 0.64
10 3 0.07
ACGTcount: A:0.12, C:0.01, G:0.34, T:0.52
Consensus pattern (9 bp):
GGTTTTAGG
Found at i:3267207 original size:42 final size:42
Alignment explanation
Indices: 3267170--3267257 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
3267160 GTTTTAGGAT
3267170 TTTAAGG-TTTTACGGTTTTTAGGGGTTTTAGGTTTTTAGTG
1 TTTAAGGATTTTACGGTTTTTAGGGGTTTTAGGTTTTTAGTG
** * * *
3267211 TTTGGGGATTTTAGGGTTTTTAGGGGTTTTAAGTTTTTTAGGG
1 TTTAAGGATTTTACGGTTTTTAGGGGTTTT-AGGTTTTTAGTG
3267254 TTTA
1 TTTA
3267258 GGTCTCGGGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 5 0.13
42 21 0.54
43 13 0.33
ACGTcount: A:0.15, C:0.01, G:0.31, T:0.53
Consensus pattern (42 bp):
TTTAAGGATTTTACGGTTTTTAGGGGTTTTAGGTTTTTAGTG
Found at i:3269966 original size:25 final size:25
Alignment explanation
Indices: 3269923--3269987 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 25
3269913 ATTTTCATTT
* * *
3269923 AAAAAAAATAGAGATGAAGGAATAAAA
1 AAAAAAAAAAGAGAAGAA-GAA-AAGA
3269950 AAAAAAGAAAAGAGAAGAAGAAAAGA
1 AAAAAA-AAAAGAGAAGAAGAAAAGA
3269976 AAAAAAAAAAGA
1 AAAAAAAAAAGA
3269988 ATGGGGCTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.18
26 9 0.26
27 9 0.26
28 10 0.29
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (25 bp):
AAAAAAAAAAGAGAAGAAGAAAAGA
Found at i:3270198 original size:24 final size:27
Alignment explanation
Indices: 3270148--3270206 Score: 97
Period size: 24 Copynumber: 2.3 Consensus size: 27
3270138 TAAGAAGAAT
3270148 GAAAAAAGAAAGAAAAAAAAGAGAAGA
1 GAAAAAAGAAAGAAAAAAAAGAGAAGA
3270175 GAAAAAAGAAA-AAAAAAAA-A-AAGA
1 GAAAAAAGAAAGAAAAAAAAGAGAAGA
3270199 GAAAAAAG
1 GAAAAAAG
3270207 TCAAAGGGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 12 0.38
25 1 0.03
26 8 0.25
27 11 0.34
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (27 bp):
GAAAAAAGAAAGAAAAAAAAGAGAAGA
Found at i:3270203 original size:9 final size:8
Alignment explanation
Indices: 3270149--3270206 Score: 57
Period size: 9 Copynumber: 6.9 Consensus size: 8
3270139 AAGAAGAATG
3270149 AAAAAAGA
1 AAAAAAGA
3270157 AAGAAAA-A
1 AA-AAAAGA
3270165 AAAGAGAAGA
1 AAA-A-AAGA
3270175 GAAAAAAGA
1 -AAAAAAGA
3270184 AAAAAA-A
1 AAAAAAGA
3270191 AAAAAAGA
1 AAAAAAGA
3270199 GAAAAAAG
1 -AAAAAAG
3270207 TCAAAGGGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
7 8 0.19
8 13 0.30
9 17 0.40
10 2 0.05
11 3 0.07
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:3271216 original size:28 final size:26
Alignment explanation
Indices: 3271172--3271229 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
3271162 TTTTTTTTTA
3271172 AAGAGAATTTTGCAAATATAAAAAATT
1 AAGAGAATTTTGCAAATAT-AAAAATT
* * *
3271199 AAGAGGATTATTGTAAATATTAAAATT
1 AAGAGAATT-TTGCAAATATAAAAATT
3271226 AAGA
1 AAGA
3271230 CATTTTTATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 18 0.67
28 9 0.33
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (26 bp):
AAGAGAATTTTGCAAATATAAAAATT
Found at i:3274111 original size:27 final size:28
Alignment explanation
Indices: 3274046--3274111 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 28
3274036 AGAATAAAAT
3274046 TTAAAAT-TTAAAAAACAATAAATCAAA
1 TTAAAATATTAAAAAACAATAAATCAAA
* * * *
3274073 TTAAATTA-TAAAAAA-ATTAATTTAAA
1 TTAAAATATTAAAAAACAATAAATCAAA
3274099 TTAAAATATTAAA
1 TTAAAATATTAAA
3274112 TTTTATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 15 0.47
27 17 0.53
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (28 bp):
TTAAAATATTAAAAAACAATAAATCAAA
Found at i:3280308 original size:259 final size:259
Alignment explanation
Indices: 3279849--3280370 Score: 1026
Period size: 259 Copynumber: 2.0 Consensus size: 259
3279839 GAAGGCAGAG
*
3279849 TTCTACCTGTTCCACTCCTACTCACCAGCCCAGCAGAGCCTTTGGAAGGTTCGGTTTTTTCCCTT
1 TTCTACCTGTTCCACTCCTACTCACCAGCCCAGCAGAGCCTTTGGAAGGTTCGGTTTTCTCCCTT
3279914 TTCTGTGGAATTCTAGTAGTAGTTTCACTCTTCTTAAACCATGGTGCAGAGTCGTTAGGAGATTG
66 TTCTGTGGAATTCTAGTAGTAGTTTCACTCTTCTTAAACCATGGTGCAGAGTCGTTAGGAGATTG
3279979 GGTCGTTTTCTTTTTATGCATGCTATAGTTCCAATATTATTGACCAATCCTGCAGGATCTTTGGG
131 GGTCGTTTTCTTTTTATGCATGCTATAGTTCCAATATTATTGACCAATCCTGCAGGATCTTTGGG
3280044 AGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
196 AGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
3280108 TTCTACCTGTTCCACTCCTACTCACCAGCCCAGCAGAGCCTTTGGAAGGTTCGGTTTTCTCCCTT
1 TTCTACCTGTTCCACTCCTACTCACCAGCCCAGCAGAGCCTTTGGAAGGTTCGGTTTTCTCCCTT
3280173 TTCTGTGGAATTCTAGTAGTAGTTTCACTCTTCTTAAACCATGGTGCAGAGTCGTTAGGAGATTG
66 TTCTGTGGAATTCTAGTAGTAGTTTCACTCTTCTTAAACCATGGTGCAGAGTCGTTAGGAGATTG
*
3280238 GGTCGTTTTCTTTTTATGTATGCTATAGTTCCAATATTATTGACCAATCCTGCAGGATCTTTGGG
131 GGTCGTTTTCTTTTTATGCATGCTATAGTTCCAATATTATTGACCAATCCTGCAGGATCTTTGGG
3280303 AGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
196 AGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
3280367 TTCT
1 TTCT
3280371 TCACCAACCC
Statistics
Matches: 261, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
259 261 1.00
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (259 bp):
TTCTACCTGTTCCACTCCTACTCACCAGCCCAGCAGAGCCTTTGGAAGGTTCGGTTTTCTCCCTT
TTCTGTGGAATTCTAGTAGTAGTTTCACTCTTCTTAAACCATGGTGCAGAGTCGTTAGGAGATTG
GGTCGTTTTCTTTTTATGCATGCTATAGTTCCAATATTATTGACCAATCCTGCAGGATCTTTGGG
AGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
Found at i:3280459 original size:82 final size:82
Alignment explanation
Indices: 3280302--3280452 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 82
3280292 GGATCTTTGG
* * * *
3280302 GAGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTTGATGCCAGAGTTCTTCTAGTTCCAATA
1 GAGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTCGATGCCAGAATTCTACTAGTTCCAACA
3280367 TTCTTCACCAACCCTGC
66 TTCTTCACCAACCCTGC
* * * * *
3280384 GAGGTTGGGCTGTTTCCTTTTTGTGCATAACATGCTTCGATGCCAGAATTGTACTGGTTTCACCA
1 GAGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTCGATGCCAGAATTCTACTAGTTCCAACA
3280449 TTCT
66 TTCT
3280453 CGACCAAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 60 1.00
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (82 bp):
GAGGTTGGGCTGTTTCCTTTTTCTGCATAACATGCTTCGATGCCAGAATTCTACTAGTTCCAACA
TTCTTCACCAACCCTGC
Found at i:3281138 original size:3 final size:3
Alignment explanation
Indices: 3281130--3281179 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
3281120 AATAATTTTT
3281130 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3281178 AT
1 AT
3281180 TTTATTTAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:3281713 original size:22 final size:22
Alignment explanation
Indices: 3281602--3281873 Score: 144
Period size: 22 Copynumber: 12.4 Consensus size: 22
3281592 AGAAAAAAAT
* * * *
3281602 TTATCAATGATTGACAATTAAG
1 TTATCAATGATTTACTACTAAA
* * * **
3281624 TTATCATTAATTTACTATTATG
1 TTATCAATGATTTACTACTAAA
3281646 TTATCAATGATTT--TAACT-AA
1 TTATCAATGATTTACT-ACTAAA
* * *
3281666 TCTATCAATGATATACTGCTACA
1 T-TATCAATGATTTACTACTAAA
*
3281689 TTATCAATGATTTATTACTAAA
1 TTATCAATGATTTACTACTAAA
* * * *
3281711 TTAATGATTAATTTACTACTAAT
1 TT-ATCAATGATTTACTACTAAA
* * *
3281734 TTATGAATGACTTACTACTAAG
1 TTATCAATGATTTACTACTAAA
* *
3281756 TTATGACTGATTTACTACTAAA
1 TTATCAATGATTTACTACTAAA
* * *
3281778 TTATTAATAATTTACTACTAAG
1 TTATCAATGATTTACTACTAAA
** **
3281800 TTATTGATGATTTGTTA-TAAA
1 TTATCAATGATTTACTACTAAA
* *
3281821 GTTAT-AATTTATTTACTA-TTAA
1 -TTATCAA-TGATTTACTACTAAA
*
3281843 TTAATCGATGATTTACTA-TAAA
1 TT-ATCAATGATTTACTACTAAA
3281865 GTTATCAAT
1 -TTATCAAT
3281874 AATGAACTAA
Statistics
Matches: 192, Mismatches: 47, Indels: 22
0.74 0.18 0.08
Matches are distributed among these distances:
20 2 0.01
21 19 0.10
22 148 0.77
23 23 0.12
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (22 bp):
TTATCAATGATTTACTACTAAA
Found at i:3281733 original size:11 final size:11
Alignment explanation
Indices: 3281719--3281798 Score: 56
Period size: 11 Copynumber: 7.3 Consensus size: 11
3281709 AATTAATGAT
3281719 TAATTTACTAC
1 TAATTTACTAC
*
3281730 TAATTTA-TGAA
1 TAATTTACT-AC
* *
3281741 TGACTTACTAC
1 TAATTTACTAC
*
3281752 TAAGTTA-TGAC
1 TAATTTACT-AC
*
3281763 TGATTTACTAC
1 TAATTTACTAC
* * *
3281774 TAAATTATTAA
1 TAATTTACTAC
3281785 TAATTTACTAC
1 TAATTTACTAC
3281796 TAA
1 TAA
3281799 GTTATTGATG
Statistics
Matches: 50, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
10 2 0.04
11 46 0.92
12 2 0.04
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (11 bp):
TAATTTACTAC
Found at i:3281775 original size:44 final size:43
Alignment explanation
Indices: 3281602--3281873 Score: 162
Period size: 44 Copynumber: 6.2 Consensus size: 43
3281592 AGAAAAAAAT
* * * * * * **
3281602 TTATCAATGATTGACAATTAAGTTATCATTAATTTACTATTATG
1 TTATCAATGATTTACTACTAAGTTATGA-TGATTTACTACTAAA
* * * *
3281646 TTATCAATGATTT--TAACTAA-TCTATCAATGATATACTGCTACA
1 TTATCAATGATTTACT-ACTAAGT-TAT-GATGATTTACTACTAAA
* * * *
3281689 TTATCAATGATTTATTACTAAATTAATGATTAATTTACTACTAAT
1 TTATCAATGATTTACTACTAAGTT-ATGA-TGATTTACTACTAAA
* *
3281734 TTATGAATGACTTACTACTAAGTTATGACTGATTTACTACTAAA
1 TTATCAATGATTTACTACTAAGTTATGA-TGATTTACTACTAAA
* * **
3281778 TTATTAATAATTTACTACTAAGTTATTGATGATTTGTTA-TAAA
1 TTATCAATGATTTACTACTAAGTTA-TGATGATTTACTACTAAA
* *
3281821 GTTAT-AATTTATTTACTATTAA-TTAATCGATGATTTACTA-TAAA
1 -TTATCAA-TGATTTACTACTAAGTT-AT-GATGATTTACTACTAAA
3281865 GTTATCAAT
1 -TTATCAAT
3281874 AATGAACTAA
Statistics
Matches: 182, Mismatches: 32, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
42 1 0.01
43 38 0.21
44 104 0.57
45 39 0.21
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (43 bp):
TTATCAATGATTTACTACTAAGTTATGATGATTTACTACTAAA
Found at i:3282778 original size:22 final size:21
Alignment explanation
Indices: 3282707--3282779 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 21
3282697 TCATTATTGG
* * *
3282707 TGATTTACTATTAAGTTGTTGA
1 TGATTTATTATTAAATT-ATGA
* *
3282729 TGATTTATTATAAAATTATAA
1 TGATTTATTATTAAATTATGA
* *
3282750 CTAATTTATTATTAATTTATCGA
1 -TGATTTATTATTAAATTAT-GA
3282773 TGATTTA
1 TGATTTA
3282780 CAATAAAATT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
21 2 0.05
22 36 0.92
23 1 0.03
ACGTcount: A:0.36, C:0.04, G:0.10, T:0.51
Consensus pattern (21 bp):
TGATTTATTATTAAATTATGA
Found at i:3282851 original size:22 final size:22
Alignment explanation
Indices: 3282826--3282881 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
3282816 ATTATCTATG
*
3282826 ATTTACAACTAAATCATTAATA
1 ATTTACTACTAAATCATTAATA
* * * *
3282848 ATTTACTATTATATCATTAGTG
1 ATTTACTACTAAATCATTAATA
3282870 ATTTACTACTAA
1 ATTTACTACTAA
3282882 GTTATCAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (22 bp):
ATTTACTACTAAATCATTAATA
Found at i:3283068 original size:22 final size:22
Alignment explanation
Indices: 3283039--3283089 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
3283029 TTAGTACTGT
3283039 TTTA-TATTAAATTATGCACAA
1 TTTACTATTAAATTATGCACAA
*
3283060 TTTACTATTAAATTATGCATAA
1 TTTACTATTAAATTATGCACAA
3283082 TTTACTAT
1 TTTACTAT
3283090 CAATGATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTACTATTAAATTATGCACAA
Found at i:3283112 original size:22 final size:22
Alignment explanation
Indices: 3283087--3283133 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
3283077 CATAATTTAC
*
3283087 TATCAATGATTAACTATTATGT
1 TATCAATGATTAACTATTAAGT
* *
3283109 TATCGATGATTTACTATTAAGT
1 TATCAATGATTAACTATTAAGT
3283131 TAT
1 TAT
3283134 ATTAATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (22 bp):
TATCAATGATTAACTATTAAGT
Found at i:3283190 original size:22 final size:22
Alignment explanation
Indices: 3283164--3283220 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
3283154 TTAATAAATA
3283164 ACTACTAAATTATCAATT-ATTT
1 ACTACTAAATTAT-AATTGATTT
*
3283186 ACTACTAATTTATAATTGATTT
1 ACTACTAAATTATAATTGATTT
* *
3283208 ATTATTAAATTAT
1 ACTACTAAATTAT
3283221 TTAATATCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (22 bp):
ACTACTAAATTATAATTGATTT
Found at i:3295952 original size:24 final size:23
Alignment explanation
Indices: 3295899--3295953 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
3295889 TTCAAATAAA
*
3295899 ATTTTAATTTTTAGTTAATATCT
1 ATTTAAATTTTTAGTTAATATCT
** * *
3295922 AAATAAATTTTTAATTTAATATGT
1 ATTTAAATTTTT-AGTTAATATCT
3295946 ATTTAAAT
1 ATTTAAAT
3295954 AAATTATTAA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (23 bp):
ATTTAAATTTTTAGTTAATATCT
Found at i:3295953 original size:28 final size:27
Alignment explanation
Indices: 3295861--3295963 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 27
3295851 GATTTTTTAA
*
3295861 TTAAATAATTTTTTATATTTTTATTGTAT
1 TTAAATAAATTTTTA-ATTTTTA-TGTAT
* *
3295890 TCAAATAAAATTTTAATTTTTA-GTTAAT
1 TTAAATAAATTTTTAATTTTTATG-T-AT
*
3295918 ATCTAAATAAATTTTTAATTTAATATGTAT
1 -T-TAAATAAATTTTTAATTT-TTATGTAT
*
3295948 TTAAATAAATTATTAA
1 TTAAATAAATTTTTAA
3295964 CATGGATCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 23 0.38
29 14 0.23
30 18 0.30
31 3 0.05
32 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (27 bp):
TTAAATAAATTTTTAATTTTTATGTAT
Found at i:3296626 original size:19 final size:20
Alignment explanation
Indices: 3296586--3296641 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 20
3296576 TGATTTAATT
3296586 TTATATTA-AATTTATTTAA
1 TTATATTATAATTTATTTAA
*
3296605 TTATATTATAATTTA-TTGA
1 TTATATTATAATTTATTTAA
3296624 TTAT-TTAATAATTT-TTTA
1 TTATATT-ATAATTTATTTA
3296642 CATATAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.06
19 24 0.75
20 6 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTATATTATAATTTATTTAA
Found at i:3298877 original size:23 final size:23
Alignment explanation
Indices: 3298851--3298897 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
3298841 TCGGAATCAG
3298851 CTCTAATGATACAAGTGAAGTGC
1 CTCTAATGATACAAGTGAAGTGC
3298874 CTCTAATGATACAAGTGAAGTGC
1 CTCTAATGATACAAGTGAAGTGC
3298897 C
1 C
3298898 ACCAAGATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (23 bp):
CTCTAATGATACAAGTGAAGTGC
Found at i:3299824 original size:16 final size:16
Alignment explanation
Indices: 3299799--3299850 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
3299789 AATACTAAAA
*
3299799 TAAAAAAATTTAAATT
1 TAAAATAATTTAAATT
3299815 TAAAATAATTTAAATT
1 TAAAATAATTTAAATT
*
3299831 TAGAATAATTTAAATT
1 TAAAATAATTTAAATT
3299847 TAAA
1 TAAA
3299851 TTTATCCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
TAAAATAATTTAAATT
Found at i:3301530 original size:16 final size:17
Alignment explanation
Indices: 3301499--3301531 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3301489 ATATTTTATT
3301499 AATTAAAATAATAAAAA
1 AATTAAAATAATAAAAA
*
3301516 AATTTAAAT-ATAAAAA
1 AATTAAAATAATAAAAA
3301532 TTCGATTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AATTAAAATAATAAAAA
Found at i:3306020 original size:3 final size:3
Alignment explanation
Indices: 3306006--3306036 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
3305996 CTAGCTTCAT
*
3306006 ACA ACA ATA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
3306037 TAATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.29, G:0.00, T:0.03
Consensus pattern (3 bp):
ACA
Found at i:3308684 original size:141 final size:141
Alignment explanation
Indices: 3308430--3308710 Score: 499
Period size: 141 Copynumber: 2.0 Consensus size: 141
3308420 TTATTGTTGT
*
3308430 TTTATATTTAATTCTAGGTTCATTAGTTGTTATTGATTATATCATATTTTCATCAAAAGTATTTA
1 TTTATATTTAATTCTAGGTTCATTAGTTGTTATTGATTATATCATAGTTTCATCAAAAGTATTTA
* *
3308495 TTGATTTAATATTTCATTCAATTATCTTGAAATTATTGTTTGAGAAGAATTTAGAGAAATCTAAT
66 TTGATTTAATATTTCATTCAATTATCCTGAAATTATTGTTTGAGAAGAATTTAGAGAAATCCAAT
*
3308560 TTACTCCCTTA
131 TCACTCCCTTA
*
3308571 TTTATATTTAATTCTAGGTTCATTAGTTGTTATTGATTATATCATAGTTTCATCAAAAGTGTTTA
1 TTTATATTTAATTCTAGGTTCATTAGTTGTTATTGATTATATCATAGTTTCATCAAAAGTATTTA
*
3308636 TTGATTTAATTTTTCATTCAATTATCCTGAAATTATTGTTTGAGAAGAATTTAGAGAAATCCAAT
66 TTGATTTAATATTTCATTCAATTATCCTGAAATTATTGTTTGAGAAGAATTTAGAGAAATCCAAT
*
3308701 TCATTCCCTT
131 TCACTCCCTT
3308711 GGTTCACCAT
Statistics
Matches: 133, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 133 1.00
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (141 bp):
TTTATATTTAATTCTAGGTTCATTAGTTGTTATTGATTATATCATAGTTTCATCAAAAGTATTTA
TTGATTTAATATTTCATTCAATTATCCTGAAATTATTGTTTGAGAAGAATTTAGAGAAATCCAAT
TCACTCCCTTA
Found at i:3314180 original size:11 final size:11
Alignment explanation
Indices: 3314164--3314204 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
3314154 ATACGATGAT
3314164 ATAATATAAAA
1 ATAATATAAAA
3314175 ATAATATAATAA
1 ATAATATAA-AA
*
3314187 AAAATATAAAA
1 ATAATATAAAA
3314198 ATAATAT
1 ATAATAT
3314205 TATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:3314183 original size:16 final size:15
Alignment explanation
Indices: 3314162--3314192 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
3314152 TAATACGATG
3314162 ATATAATATAAAAATA
1 ATATAATA-AAAAATA
3314178 ATATAATAAAAAATA
1 ATATAATAAAAAATA
3314193 TAAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
ATATAATAAAAAATA
Found at i:3315012 original size:18 final size:18
Alignment explanation
Indices: 3314991--3315025 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3314981 TTCACTGGTT
*
3314991 TCTGGGACTTCAAATATG
1 TCTGAGACTTCAAATATG
3315009 TCTGAGACTTCAAATAT
1 TCTGAGACTTCAAATAT
3315026 ATCATGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (18 bp):
TCTGAGACTTCAAATATG
Found at i:3343187 original size:6 final size:6
Alignment explanation
Indices: 3343176--3343266 Score: 94
Period size: 6 Copynumber: 15.3 Consensus size: 6
3343166 AAATCTTATC
* * * *
3343176 TTAATT TTAATT TTGATT TTAATT TTGATT TTAGTT TTAATT TTAGTT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
* * * **
3343224 TTGATT TTGATT TTAA-T TTAATT TTAGTT TTTTTT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TT
3343267 GGGTCAAAGT
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
5 5 0.07
6 64 0.93
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (6 bp):
TTAATT
Found at i:3343759 original size:15 final size:15
Alignment explanation
Indices: 3343741--3343770 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
3343731 GAAAATTTGG
*
3343741 GTTTGATTTTTGGGA
1 GTTTGATTTCTGGGA
3343756 GTTTGATTTCTGGGA
1 GTTTGATTTCTGGGA
3343771 TTGTTAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.03, G:0.33, T:0.50
Consensus pattern (15 bp):
GTTTGATTTCTGGGA
Found at i:3344332 original size:11 final size:11
Alignment explanation
Indices: 3344316--3344367 Score: 50
Period size: 11 Copynumber: 4.4 Consensus size: 11
3344306 TCTATTTCTA
3344316 TTTTGATTTTG
1 TTTTGATTTTG
3344327 TTTTGATTTTG
1 TTTTGATTTTG
*
3344338 ATTTTTTAATTTTTG
1 ---TTTTGA-TTTTG
*
3344353 TTTTGATTTTA
1 TTTTGATTTTG
3344364 TTTT
1 TTTT
3344368 TTGTTCTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
11 19 0.56
12 5 0.15
14 5 0.15
15 5 0.15
ACGTcount: A:0.13, C:0.00, G:0.12, T:0.75
Consensus pattern (11 bp):
TTTTGATTTTG
Found at i:3344362 original size:18 final size:17
Alignment explanation
Indices: 3344292--3344368 Score: 66
Period size: 18 Copynumber: 4.3 Consensus size: 17
3344282 TCCTTTTCTT
*
3344292 TTTTTGTTTTAATTTCTA
1 TTTTTGTTTTGATTT-TA
* *
3344310 TTTCTATTTTGATTTT-
1 TTTTTGTTTTGATTTTA
*
3344326 GTTTTGATTTTGATTTTTTAA
1 TTTTTG-TTTTGA--TTTT-A
3344347 TTTTTGTTTTGATTTTA
1 TTTTTGTTTTGATTTTA
3344364 TTTTT
1 TTTTT
3344369 TGTTCTGTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
16 3 0.06
17 13 0.28
18 16 0.34
19 4 0.09
20 6 0.13
21 5 0.11
ACGTcount: A:0.14, C:0.03, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTTGTTTTGATTTTA
Found at i:3344548 original size:21 final size:21
Alignment explanation
Indices: 3344512--3344572 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
3344502 TATATATTTA
*
3344512 ATTACATATTT-ATTTGCATG
1 ATTATATATTTAATTTGCATG
3344532 ATT-TATATTATAATTTGCATG
1 ATTATATATT-TAATTTGCATG
3344553 ATTATATATTTAA-TTGCATG
1 ATTATATATTTAATTTGCATG
3344573 TCTATTTGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 5 0.14
20 11 0.30
21 15 0.41
22 6 0.16
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.51
Consensus pattern (21 bp):
ATTATATATTTAATTTGCATG
Found at i:3344654 original size:7 final size:7
Alignment explanation
Indices: 3344642--3344675 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
3344632 ATCTGCATGG
3344642 TTATTCA
1 TTATTCA
3344649 TTATTCA
1 TTATTCA
*
3344656 TTATTTA
1 TTATTCA
3344663 TTATTGCA
1 TTATT-CA
3344671 TTATT
1 TTATT
3344676 TTGTATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.62
Consensus pattern (7 bp):
TTATTCA
Found at i:3344702 original size:29 final size:28
Alignment explanation
Indices: 3344670--3344735 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 28
3344660 TTATTATTGC
3344670 ATTATTTTGTATTTATTGCATGA-T-AT
1 ATTATTTTGTATTTATTGCATGATTAAT
* *
3344696 GA-TATTATATA-TTATTGCATGATTAAT
1 -ATTATTTTGTATTTATTGCATGATTAAT
3344723 ATTATATTTGTAT
1 ATTAT-TTTGTAT
3344736 CATATCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
25 11 0.37
26 9 0.30
27 6 0.20
28 4 0.13
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.55
Consensus pattern (28 bp):
ATTATTTTGTATTTATTGCATGATTAAT
Found at i:3344714 original size:25 final size:24
Alignment explanation
Indices: 3344682--3344729 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
3344672 TATTTTGTAT
*
3344682 TTATTGCATGATATGATATTATATA
1 TTATTGCATGAT-TAATATTATATA
3344707 TTATTGCATGATTAATATTATAT
1 TTATTGCATGATTAATATTATAT
3344730 TTGTATCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
TTATTGCATGATTAATATTATATA
Found at i:3344796 original size:18 final size:18
Alignment explanation
Indices: 3344773--3344843 Score: 74
Period size: 18 Copynumber: 3.9 Consensus size: 18
3344763 CTTGTGTGTA
3344773 TAATTGCATGATTATATT
1 TAATTGCATGATTATATT
* *
3344791 TAATTGCATAATTACTAATA
1 TAATTGCATGATTA-T-ATT
*
3344811 TATTTG--TGATTATATT
1 TAATTGCATGATTATATT
*
3344827 TGATTGCATGATTATAT
1 TAATTGCATGATTATAT
3344844 ATTTGCATGA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
16 6 0.14
17 1 0.02
18 27 0.64
19 1 0.02
20 7 0.17
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (18 bp):
TAATTGCATGATTATATT
Found at i:3344851 original size:16 final size:16
Alignment explanation
Indices: 3344808--3344853 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
3344798 ATAATTACTA
3344808 ATATATTTG--TGATT
1 ATATATTTGCATGATT
*
3344822 ATATTTGATTGCATGATT
1 ATATAT--TTGCATGATT
3344840 ATATATTTGCATGA
1 ATATATTTGCATGA
3344854 ATGGTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.19
16 11 0.42
18 10 0.38
ACGTcount: A:0.30, C:0.04, G:0.15, T:0.50
Consensus pattern (16 bp):
ATATATTTGCATGATT
Found at i:3344913 original size:20 final size:20
Alignment explanation
Indices: 3344863--3344915 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
3344853 AATGGTTATA
* * *
3344863 AATATATTTACATGGTATTT
1 AATATATTTGCATGATAATT
*
3344883 TATATCA-TTGCATGATAATT
1 AATAT-ATTTGCATGATAATT
3344903 AATATATTTGCAT
1 AATATATTTGCAT
3344916 AATATTATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (20 bp):
AATATATTTGCATGATAATT
Found at i:3345842 original size:29 final size:31
Alignment explanation
Indices: 3345789--3345868 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 31
3345779 ATAAGACGTC
3345789 TTAATTATATATAAATAAAATATTTTATTAA-A
1 TTAA-TATAT-TAAATAAAATATTTTATTAATA
*
3345821 TTAATATATTAAATAATA-ATTTTATTAATA
1 TTAATATATTAAATAAAATATTTTATTAATA
*
3345851 TAATATATGATTAAATAA
1 TTA-ATAT-ATTAAATAA
3345869 GGAATAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
29 10 0.23
30 11 0.26
31 9 0.21
32 13 0.30
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (31 bp):
TTAATATATTAAATAAAATATTTTATTAATA
Found at i:3345846 original size:16 final size:16
Alignment explanation
Indices: 3345790--3345868 Score: 58
Period size: 16 Copynumber: 5.0 Consensus size: 16
3345780 TAAGACGTCT
*
3345790 TAATTATATATAAATAA
1 TAATTTTAT-TAAATAA
*
3345807 AATATTTTATTAAAT--
1 TA-ATTTTATTAAATAA
*
3345822 TAA-TATATTAAATAA
1 TAATTTTATTAAATAA
3345837 TAATTTTATTAATATAA
1 TAATTTTATTAA-ATAA
* *
3345854 T-ATATGATTAAATAA
1 TAATTTTATTAAATAA
3345869 GGAATAAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
13 9 0.18
14 1 0.02
15 8 0.16
16 15 0.30
17 11 0.22
18 6 0.12
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (16 bp):
TAATTTTATTAAATAA
Found at i:3347401 original size:2 final size:2
Alignment explanation
Indices: 3347394--3347434 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
3347384 TTTATGGGAT
3347394 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
3347435 TCACCTTCCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:3349201 original size:20 final size:19
Alignment explanation
Indices: 3349178--3349225 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
3349168 ATTAATCTAG
* *
3349178 AATAATAATTTATATTATTT
1 AATAATAATCTAT-TTATTA
*
3349198 AATAAAAATCTATTTATTA
1 AATAATAATCTATTTATTA
3349217 AATATATAA
1 AATA-ATAA
3349226 ATATTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
AATAATAATCTATTTATTA
Found at i:3351007 original size:20 final size:20
Alignment explanation
Indices: 3350984--3351024 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3350974 AGATATAGGC
*
3350984 ATTAATTTTATAAATGTGAT
1 ATTAACTTTATAAATGTGAT
**
3351004 ATTAACTTTATTGATGTGAT
1 ATTAACTTTATAAATGTGAT
3351024 A
1 A
3351025 ATTTAAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49
Consensus pattern (20 bp):
ATTAACTTTATAAATGTGAT
Found at i:3351282 original size:15 final size:15
Alignment explanation
Indices: 3351262--3351295 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
3351252 AAACAAAATA
*
3351262 TTTAATTTTATTATT
1 TTTAATTTTATAATT
3351277 TTTAATTTTATAATT
1 TTTAATTTTATAATT
3351292 TTTA
1 TTTA
3351296 TAAAAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTAATTTTATAATT
Found at i:3355169 original size:2 final size:2
Alignment explanation
Indices: 3355162--3355200 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
3355152 TTTATCCTCC
3355162 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
3355201 ATCTTAATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:3358140 original size:24 final size:25
Alignment explanation
Indices: 3358107--3358155 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
3358097 ATATATATTT
3358107 ATATAATTATATATGTAAAAA-AATA
1 ATATAATTATAT-TGTAAAAATAATA
*
3358132 ATAT-ATTATATTTTAAAAATAATA
1 ATATAATTATATTGTAAAAATAATA
3358156 TTTTATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 7 0.32
24 11 0.50
25 4 0.18
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
ATATAATTATATTGTAAAAATAATA
Found at i:3358162 original size:24 final size:23
Alignment explanation
Indices: 3358107--3358168 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
3358097 ATATATATTT
*
3358107 ATATAATTATATATGTAAAAAAATA
1 ATAT-ATTATAT-TTTAAAAAAATA
3358132 ATATATTATATTTTAAAAATAATA
1 ATATATTATATTTTAAAAA-AATA
* *
3358156 TTTTATTA-ATTTT
1 ATATATTATATTTT
3358169 CAATCGAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 12 0.36
24 17 0.52
25 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
ATATATTATATTTTAAAAAAATA
Found at i:3359641 original size:17 final size:17
Alignment explanation
Indices: 3359615--3359654 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
3359605 AAATTTATTT
*
3359615 AATTTTTTTGTAAAAAA
1 AATTTATTTGTAAAAAA
* *
3359632 AATTTATTTGTGAAAAC
1 AATTTATTTGTAAAAAA
3359649 AATTTA
1 AATTTA
3359655 GTTTCAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (17 bp):
AATTTATTTGTAAAAAA
Found at i:3360073 original size:15 final size:15
Alignment explanation
Indices: 3360053--3360090 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
3360043 TCAACCATTT
*
3360053 AAAATAATAAATATG
1 AAAATAATAAATACG
*
3360068 AAAAT-ATAATTACG
1 AAAATAATAAATACG
3360082 AAAATAATA
1 AAAATAATA
3360091 TATAAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (15 bp):
AAAATAATAAATACG
Found at i:3360592 original size:20 final size:22
Alignment explanation
Indices: 3360558--3360597 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
3360548 CCTGGAACAC
*
3360558 AAAAAATCTCGAAAATTCACCA
1 AAAAAATCTCGAAAAATCACCA
3360580 AAAAAATC-C-AAAAATCAC
1 AAAAAATCTCGAAAAATCAC
3360598 ATAAACCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 1 0.06
22 8 0.47
ACGTcount: A:0.60, C:0.23, G:0.03, T:0.15
Consensus pattern (22 bp):
AAAAAATCTCGAAAAATCACCA
Found at i:3361538 original size:73 final size:73
Alignment explanation
Indices: 3361446--3361597 Score: 234
Period size: 73 Copynumber: 2.1 Consensus size: 73
3361436 AATTTTTAGT
*
3361446 TTGAAATTCAAAGATTCACAATTTGAAAATTCAA-AGGTTTGTGTCAAAAATTTACAAGGTTTCA
1 TTGAAATCCAAAGATTCACAATTTGAAAATTCAAGA-GTTTGTGTCAAAAATTTACAAGGTTTCA
**
3361510 TAGTAAAAA
65 TAACAAAAA
* **
3361519 TTGAAATCCAAAGATTCACAATTTGAAAATTCAAGAGTTTGTGTCAAAGATTTGTAAGGTTTCAT
1 TTGAAATCCAAAGATTCACAATTTGAAAATTCAAGAGTTTGTGTCAAAAATTTACAAGGTTTCAT
3361584 AACAAAAA
66 AACAAAAA
3361592 TTGAAA
1 TTGAAA
3361598 GATTCCAAGA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
73 71 0.99
74 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.32
Consensus pattern (73 bp):
TTGAAATCCAAAGATTCACAATTTGAAAATTCAAGAGTTTGTGTCAAAAATTTACAAGGTTTCAT
AACAAAAA
Found at i:3361733 original size:18 final size:18
Alignment explanation
Indices: 3361681--3361733 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
3361671 TTTCTAAAAA
* *
3361681 TTTCAAGTTTCGCAAAGG
1 TTTCAAGTTTTGAAAAGG
*
3361699 TTTC-AGATTTGCAAAAGG
1 TTTCAAGTTTTG-AAAAGG
*
3361717 TTTCAAGTTTTGTAAAG
1 TTTCAAGTTTTGAAAAG
3361734 ATTCCAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 5 0.18
18 17 0.61
19 6 0.21
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (18 bp):
TTTCAAGTTTTGAAAAGG
Found at i:3361778 original size:18 final size:18
Alignment explanation
Indices: 3361692--3361778 Score: 67
Period size: 18 Copynumber: 5.0 Consensus size: 18
3361682 TTCAAGTTTC
3361692 GCAAAGGTT-TCAGATTT
1 GCAAAGGTTCTCAGATTT
*
3361709 GCAAAAGGTT-TCAAGTTTT
1 GC-AAAGGTTCTC-AGATTT
* * *
3361728 GTAAAGATTC-CAAATTT
1 GCAAAGGTTCTCAGATTT
*
3361745 AC-AAGGTTCT-AGATTT
1 GCAAAGGTTCTCAGATTT
*
3361761 GCAAAGATTCTCAGATTT
1 GCAAAGGTTCTCAGATTT
3361779 ATAATAATTT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
16 12 0.23
17 13 0.25
18 22 0.42
19 6 0.11
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (18 bp):
GCAAAGGTTCTCAGATTT
Found at i:3361851 original size:17 final size:17
Alignment explanation
Indices: 3361793--3361840 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
3361783 TAATTTTTAG
*
3361793 ATTTGCAAGAATTACAA
1 ATTTGCAAGAATTTCAA
* *
3361810 GTTTTCAAGAATTTCAA
1 ATTTGCAAGAATTTCAA
*
3361827 ATTCGCAAGAATTT
1 ATTTGCAAGAATTT
3361841 TAGGTTTGCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
ATTTGCAAGAATTTCAA
Found at i:3368055 original size:103 final size:103
Alignment explanation
Indices: 3367839--3368056 Score: 341
Period size: 103 Copynumber: 2.1 Consensus size: 103
3367829 AAATATCTTT
* *
3367839 CAATATATT-GTAGGATTAAAATTTTATTTGTTTGTGAAAACAACTTAGTTTTAGAAATATCTTT
1 CAATATATTGGTAGGATTAAAATTTTATTTATTTGTGAAAACAACTTAGTTTTAGAAATATCTTC
*
3367903 CAATATGTTGGTAAGATTTTTTATCAAGAATTATCCTC
66 CAATATGTTGGTAAGATTTTCTATCAAGAATTATCCTC
* * *
3367941 AAATCTGTTGGTAGGATTAAAATTTTATTTATTTGTGAAAACAACTTAGTTTTAGAAATATCTTC
1 CAATATATTGGTAGGATTAAAATTTTATTTATTTGTGAAAACAACTTAGTTTTAGAAATATCTTC
*
3368006 CAATATGTTGGTAAGATTTTCTATTAA-ATATTATCCTC
66 CAATATGTTGGTAAGATTTTCTATCAAGA-ATTATCCTC
*
3368044 CAATTTATTGGTA
1 CAATATATTGGTA
3368057 AAATTTTTTA
Statistics
Matches: 104, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
102 7 0.07
103 97 0.93
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (103 bp):
CAATATATTGGTAGGATTAAAATTTTATTTATTTGTGAAAACAACTTAGTTTTAGAAATATCTTC
CAATATGTTGGTAAGATTTTCTATCAAGAATTATCCTC
Found at i:3368073 original size:38 final size:38
Alignment explanation
Indices: 3367999--3368075 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
3367989 GTTTTAGAAA
* * * **
3367999 TATCTTCCAATATGTTGGTAAGATTTTCTATTAAATAT
1 TATCCTCCAATATATTGGTAAAATTTTCTAAAAAATAT
* *
3368037 TATCCTCCAATTTATTGGTAAAATTTTTTAAAAAATAT
1 TATCCTCCAATATATTGGTAAAATTTTCTAAAAAATAT
3368075 T
1 T
3368076 TTTTAAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (38 bp):
TATCCTCCAATATATTGGTAAAATTTTCTAAAAAATAT
Found at i:3368078 original size:14 final size:14
Alignment explanation
Indices: 3368059--3368086 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3368049 TATTGGTAAA
3368059 ATTTTTTAAAAAAT
1 ATTTTTTAAAAAAT
3368073 ATTTTTTAAAAAAT
1 ATTTTTTAAAAAAT
3368087 TCATTAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTTTTAAAAAAT
Found at i:3368280 original size:29 final size:30
Alignment explanation
Indices: 3368246--3368306 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
3368236 TAATACCATG
3368246 TAATAAAAATATAATA-TATCATGCAA-TAA
1 TAATAAAAATATAA-ACTATCATGCAATTAA
** *
3368275 TAATAATCATGTAAACTATCATGCAATTAA
1 TAATAAAAATATAAACTATCATGCAATTAA
3368305 TA
1 TA
3368307 TATTAAACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.04
29 21 0.78
30 5 0.19
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.33
Consensus pattern (30 bp):
TAATAAAAATATAAACTATCATGCAATTAA
Found at i:3369356 original size:14 final size:13
Alignment explanation
Indices: 3369334--3369376 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
3369324 AAATGCCATG
*
3369334 TTTTCTTTCCTTT
1 TTTTTTTTCCTTT
3369347 TTTTTATTTCTCTTT
1 TTTTT-TTTC-CTTT
*
3369362 TTTTTTTTACTTT
1 TTTTTTTTCCTTT
3369375 TT
1 TT
3369377 ACTTTTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 10 0.38
14 7 0.27
15 9 0.35
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTTCCTTT
Found at i:3369363 original size:15 final size:14
Alignment explanation
Indices: 3369334--3369376 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
3369324 AAATGCCATG
*
3369334 TTTTCTTTCCTTTT
1 TTTTATTTCCTTTT
3369348 TTTTATTTCTCTTTT
1 TTTTATTTC-CTTTT
*
3369363 TTTT-TTTACTTTT
1 TTTTATTTCCTTTT
3369376 T
1 T
3369377 ACTTTTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 6 0.23
14 11 0.42
15 9 0.35
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTCCTTTT
Found at i:3369365 original size:18 final size:20
Alignment explanation
Indices: 3369344--3369416 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
3369334 TTTTCTTTCC
3369344 TTTTTTTTA-TTTCT-CTTT
1 TTTTTTTTACTTTCTACTTT
*
3369362 TTTTTTTTACTTTTTACTTT
1 TTTTTTTTACTTTCTACTTT
* * **
3369382 TTTGACTTTGACTTTAAACTTT
1 TTT--TTTTTACTTTCTACTTT
*
3369404 TATTTTTTACTTT
1 TTTTTTTTACTTT
3369417 TGATCAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
18 9 0.21
19 4 0.09
20 15 0.35
22 15 0.35
ACGTcount: A:0.14, C:0.11, G:0.03, T:0.73
Consensus pattern (20 bp):
TTTTTTTTACTTTCTACTTT
Found at i:3369452 original size:11 final size:11
Alignment explanation
Indices: 3369438--3369471 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
3369428 GATAAAAACA
3369438 AAAATAAAATT
1 AAAATAAAATT
*
3369449 AAAATTAAATT
1 AAAATAAAATT
3369460 AAAATCAAAATT
1 AAAAT-AAAATT
3369472 CTAAGCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATAAAATT
Found at i:3370466 original size:18 final size:18
Alignment explanation
Indices: 3370445--3370485 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
3370435 ATTTGATTCA
*
3370445 TCTTAATACTTACATTGT
1 TCTTAATACTTACATTGG
*
3370463 TCTTAATACTTACTTTGG
1 TCTTAATACTTACATTGG
3370481 TCTTA
1 TCTTA
3370486 GTTTTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.51
Consensus pattern (18 bp):
TCTTAATACTTACATTGG
Found at i:3372949 original size:7 final size:7
Alignment explanation
Indices: 3372937--3372973 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
3372927 AATAATTTAA
3372937 TTTAAAT
1 TTTAAAT
3372944 TTTAAAT
1 TTTAAAT
3372951 TTTAAAT
1 TTTAAAT
3372958 TTTAAACCT
1 TTTAAA--T
3372967 TTTAAAT
1 TTTAAAT
3372974 AAATTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.75
9 7 0.25
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (7 bp):
TTTAAAT
Found at i:3373172 original size:27 final size:27
Alignment explanation
Indices: 3373133--3373199 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
3373123 ATTTTTAGAT
* * *
3373133 TTTTAATTAAAATTGATT-CATTTTTA
1 TTTTAATTTAAATTGATTAAATTTTAA
*
3373159 TATTTAATTTAAATTTATTAAATTTTAA
1 T-TTTAATTTAAATTGATTAAATTTTAA
3373187 TTATTAATTTAAA
1 TT-TTAATTTAAA
3373200 AATATGTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 16 0.47
28 17 0.50
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (27 bp):
TTTTAATTTAAATTGATTAAATTTTAA
Found at i:3373190 original size:14 final size:15
Alignment explanation
Indices: 3373159--3373199 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
3373149 TTCATTTTTA
*
3373159 TATTTAATTTAAATT
1 TATTAAATTTAAATT
*
3373174 TATTAAATTTTAA-T
1 TATTAAATTTAAATT
3373188 TATT-AATTTAAA
1 TATTAAATTTAAA
3373200 AATATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
13 7 0.30
14 5 0.22
15 11 0.48
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTAAATTTAAATT
Found at i:3374659 original size:16 final size:16
Alignment explanation
Indices: 3374638--3374670 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3374628 TTGAAAATGG
*
3374638 AATGCATCGTCATCAA
1 AATGCATCATCATCAA
3374654 AATGCATCATCATCAA
1 AATGCATCATCATCAA
3374670 A
1 A
3374671 TTTTATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (16 bp):
AATGCATCATCATCAA
Found at i:3377033 original size:16 final size:16
Alignment explanation
Indices: 3377013--3377077 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 16
3377003 TTGGTATTTT
3377013 TTTATGTGTTTGTTTA
1 TTTATGTGTTTGTTTA
* * * *
3377029 ATTATTTTTTTATTT-
1 TTTATGTGTTTGTTTA
* *
3377044 TTTTTG-GTTTTTTTA
1 TTTATGTGTTTGTTTA
3377059 TTTATGTGTTTGTTTA
1 TTTATGTGTTTGTTTA
3377075 TTT
1 TTT
3377078 TTTTTAAAGA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
14 6 0.17
15 8 0.22
16 22 0.61
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.75
Consensus pattern (16 bp):
TTTATGTGTTTGTTTA
Found at i:3377063 original size:46 final size:43
Alignment explanation
Indices: 3376989--3377082 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 43
3376979 AGCCAAGCCG
3376989 TTTTTTATTTTTTTTTGGTATTTTTTTATGTGTTTGTTTAATTAT
1 TTTTTTATTTTTTTTTGGTATTTTTTTATGTGTTTGTTT-ATT-T
*
3377034 TTTTTTA-TTTTTTTTGGTTTTTTTATTTATGTGTTTGTTTATTT
1 TTTTTTATTTTTTTTTGG-TATTTT-TTTATGTGTTTGTTTATTT
3377078 TTTTT
1 TTTTT
3377083 AAAGAGTATT
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
44 16 0.35
45 15 0.33
46 15 0.33
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.79
Consensus pattern (43 bp):
TTTTTTATTTTTTTTTGGTATTTTTTTATGTGTTTGTTTATTT
Found at i:3377069 original size:42 final size:44
Alignment explanation
Indices: 3376989--3377081 Score: 118
Period size: 42 Copynumber: 2.1 Consensus size: 44
3376979 AGCCAAGCCG
* *
3376989 TTTTTTATTTTTTTTTGGTATTTTTTTATGTGTTTGTTTAATTAT
1 TTTTTTATTTTTTTTTGG-ATTTTTTTATGTATGTGTTTAATTAT
* **
3377034 TTTTTTA-TTTTTTTTGG-TTTTTTTATTTATGTGTTTGTTTAT
1 TTTTTTATTTTTTTTTGGATTTTTTTATGTATGTGTTTAATTAT
3377076 TTTTTT
1 TTTTTT
3377082 TAAAGAGTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 26 0.60
44 10 0.23
45 7 0.16
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (44 bp):
TTTTTTATTTTTTTTTGGATTTTTTTATGTATGTGTTTAATTAT
Found at i:3377129 original size:15 final size:15
Alignment explanation
Indices: 3377111--3377141 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3377101 AATAAATTTA
*
3377111 AAAAATTTAAAATAT
1 AAAAATTAAAAATAT
3377126 AAAAATTAAAAATAT
1 AAAAATTAAAAATAT
3377141 A
1 A
3377142 TATTTTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATTAAAAATAT
Found at i:3377219 original size:55 final size:58
Alignment explanation
Indices: 3377152--3377260 Score: 179
Period size: 55 Copynumber: 1.9 Consensus size: 58
3377142 TATTTTTGAA
3377152 AAAAATTGAAAGTATTAATTTTTCTT-AAAATAAAA-TTATAAAA-AAAATTTTAAGG
1 AAAAATTGAAAGTATTAATTTTTCTTAAAAATAAAATTTATAAAATAAAATTTTAAGG
* *
3377207 AAAAGTTGAAAGTATTAATTTTTCTTAAAAATAAAATTTCTAAAATAAAATTTT
1 AAAAATTGAAAGTATTAATTTTTCTTAAAAATAAAATTTATAAAATAAAATTTT
3377261 TCAAAAGCAT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
55 25 0.51
56 9 0.18
57 7 0.14
58 8 0.16
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (58 bp):
AAAAATTGAAAGTATTAATTTTTCTTAAAAATAAAATTTATAAAATAAAATTTTAAGG
Found at i:3377337 original size:59 final size:60
Alignment explanation
Indices: 3377269--3377424 Score: 208
Period size: 61 Copynumber: 2.6 Consensus size: 60
3377259 TTTCAAAAGC
* *
3377269 ATTTTGAGGAAAAATTGAAAGCATCAATTTTTCTTGAAATTAAAATT-TC-AGAAAAAAAT
1 ATTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAATAAAAATTATCAAG-AAAAAAT
* * * *
3377328 ATTTTGAGGAAAAGTTGAAAGTATAAATTTTTCTTAAAAATAAAAATTATCAAGAAAAATT
1 ATTTTGAGGAAAAATTGAAAGTATCAATTTTTCTT-GAAATAAAAATTATCAAGAAAAAAT
* *
3377389 ATTTTTAGGAAAACTTGAAAGTATCAATTTTTCTTG
1 ATTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTG
3377425 TATAAAAGCA
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
59 32 0.38
60 10 0.12
61 40 0.48
62 2 0.02
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (60 bp):
ATTTTGAGGAAAAATTGAAAGTATCAATTTTTCTTGAAATAAAAATTATCAAGAAAAAAT
Found at i:3378082 original size:22 final size:21
Alignment explanation
Indices: 3378040--3378083 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
3378030 TTTTTGTATA
*
3378040 TATTTTTTTATTCATTCATTT
1 TATTTATTTATTCATTCATTT
*
3378061 TATTTATTTACTTCATTGATTT
1 TATTTATTTA-TTCATTCATTT
3378083 T
1 T
3378084 GTCATTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.68
Consensus pattern (21 bp):
TATTTATTTATTCATTCATTT
Found at i:3384565 original size:21 final size:21
Alignment explanation
Indices: 3384529--3384576 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
3384519 TCTTTTGAAT
* *
3384529 TTTTGAGTTCTCAAATGAGAA
1 TTTTGAATTCTCAAATAAGAA
3384550 TATTTGAATT-TCAAATAAGAA
1 T-TTTGAATTCTCAAATAAGAA
3384571 TTTTGA
1 TTTTGA
3384577 GGTGTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 5 0.21
21 12 0.50
22 7 0.29
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.42
Consensus pattern (21 bp):
TTTTGAATTCTCAAATAAGAA
Done.