Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 30 of 109
Found at i:5107260 original size:70 final size:69
Alignment explanation
Indices: 5107186--5107421 Score: 207
Period size: 70 Copynumber: 3.4 Consensus size: 69
5107176 AACAACCAAA
* *
5107186 ATTAAATCACGAGTCAAAAAATGAAAACAACAAGGATTAAATCACGAA-TCAGAAAATGAAAATG
1 ATTAAATCATGAGTCAAAAAATGAAAACAAC-AGGATTAAA-CACGAAGTCAAAAAATGAAAATG
5107250 ACCAGG
64 ACCAGG
* ** * *
5107256 ATTAAAACATGAGTC-AGGAAT-AAAAGC-ACTAGGAATTAAAC-TGTAAGTTAAAAAATGAAAA
1 ATTAAATCATGAGTCAAAAAATGAAAA-CAAC-AGG-ATTAAACACG-AAGTCAAAAAATGAAAA
**
5107317 TGACCAAA
62 TGACCAGG
** * *
5107325 ATTAAATCATGAGTCAAAAAACAAAAACAACTGAGATTAAACCAC-AAGTCAAAAAATAAAAATG
1 ATTAAATCATGAGTCAAAAAATGAAAACAACAG-GATTAAA-CACGAAGTCAAAAAATGAAAATG
*
5107389 ATCAGG
64 ACCAGG
*
5107395 ATTAAA-CTGTGAGTCAAAAAATGAAAA
1 ATTAAATC-ATGAGTCAAAAAATGAAAA
5107422 TGATCGAGAT
Statistics
Matches: 131, Mismatches: 24, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
67 1 0.01
68 12 0.09
69 44 0.34
70 66 0.50
71 8 0.06
ACGTcount: A:0.55, C:0.12, G:0.14, T:0.18
Consensus pattern (69 bp):
ATTAAATCATGAGTCAAAAAATGAAAACAACAGGATTAAACACGAAGTCAAAAAATGAAAATGAC
CAGG
Found at i:5107398 original size:35 final size:35
Alignment explanation
Indices: 5107357--5107435 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 35
5107347 AAAAACAACT
5107357 GAGATTAAACCACAAGTCAAAAAATAAAAATGATC
1 GAGATTAAACCACAAGTCAAAAAATAAAAATGATC
**** *
5107392 -AGGATTAAACTGTGAGTCAAAAAATGAAAATGATC
1 GA-GATTAAACCACAAGTCAAAAAATAAAAATGATC
5107427 GAGATTAAA
1 GAGATTAAA
5107436 TCAATGATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
34 1 0.03
35 35 0.95
36 1 0.03
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.20
Consensus pattern (35 bp):
GAGATTAAACCACAAGTCAAAAAATAAAAATGATC
Found at i:5107591 original size:35 final size:35
Alignment explanation
Indices: 5107515--5107594 Score: 90
Period size: 36 Copynumber: 2.3 Consensus size: 35
5107505 AAAAAGACTG
** *
5107515 GGATTAAAGTATGAGTTAAAAAATGAAAAACAACCT
1 GGATTAAACCATGAGTTAAAAAATCAAAAACAA-CT
* *
5107551 GGATTAAACCATGAGTTAGAAAA-CAAAAACTACT
1 GGATTAAACCATGAGTTAAAAAATCAAAAACAACT
5107585 GTGATTAAAC
1 G-GATTAAAC
5107595 TACAAGTCAG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
34 3 0.08
35 15 0.39
36 20 0.53
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.23
Consensus pattern (35 bp):
GGATTAAACCATGAGTTAAAAAATCAAAAACAACT
Found at i:5107712 original size:35 final size:35
Alignment explanation
Indices: 5107632--5108248 Score: 275
Period size: 35 Copynumber: 17.6 Consensus size: 35
5107622 GATTAAGCAT
*
5107632 TGAGTCAGAAAA--AAAATGACCT-AGATTAAAGCA
1 TGAGTCAGAAAATGAAAATGA-CTAAGATTAAATCA
* * * *
5107665 CGAGCCAAAAAATGAAAATGACTAAGATTAAACCA
1 TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
* * * *
5107700 TGAGTTAGAAAATGGAAATGACCAGGATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
** ** * *
5107735 CCAGTCAGAAAAACAAAAATGAAC-AGGATTAAACCA
1 TGAGTCAG-AAAATGAAAATG-ACTAAGATTAAATCA
* * * *
5107771 TGGGTCAAAAAATGAAACA--ACCAAAATTAAATCA
1 TGAGTCAGAAAATGAAA-ATGACTAAGATTAAATCA
* **
5107805 TGAGTCAAAAAATGAAAAAAAC-AAGGATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAA-GATTAAATCA
* * * * *
5107840 CGAATCAGAAAATGAAAATTACCAGGATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
** ** * * *
5107875 TGAGTCAGGGAAT-AAAAACAATAGGAATTAAATCG
1 TGAGTCAGAAAATGAAAATGACTAAG-ATTAAATCA
* * * *
5107910 TAAGTCAAAAAATGAAAATGGCTAAAATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
** **
5107945 TGAGTCAGAAAACAAAAACAAC-AGAGATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTA-AGATTAAATCA
* * * * *
5107980 TAAGTCAAAAAATGAAAATGA-TCAGGATTAAACCG
1 TGAGTCAGAAAATGAAAATGACT-AAGATTAAATCA
* * *
5108015 TGAGTCAAAAAATGAAAACGA-TCGAGATTAAATCA
1 TGAGTCAGAAAATGAAAATGACT-AAGATTAAATCA
**
5108050 CAAGTCAGAAAATGAAAA--AC-AACCGTCATTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAA--G--ATTAAATCA
* *
5108086 TGAGTCAGAGAAATGAAAATGA-TCGATATTAAATCA
1 TGAGTCAGA-AAATGAAAATGACT-AAGATTAAATCA
* * * *
5108122 -CATGTCA-AAAATTAAAAACT-ACTTAGAATAAATCA
1 TGA-GTCAGAAAA-TGAAAA-TGACTAAGATTAAATCA
* ** * * *
5108157 TGAGTCAGAAAATCAAAACCACCAAAACTAAATCA
1 TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
* * *
5108192 -CATGTCAGAGAATGAAAAATGACCGAA-ATTAAATCA
1 TGA-GTCAGAAAATG-AAAATGA-CTAAGATTAAATCA
* * *
5108228 TGAGTTAAAAAATAAAAATGA
1 TGAGTCAGAAAATGAAAATGA
5108249 TCGGGATTTG
Statistics
Matches: 436, Mismatches: 111, Indels: 72
0.70 0.18 0.12
Matches are distributed among these distances:
32 1 0.00
33 13 0.03
34 43 0.10
35 273 0.63
36 89 0.20
37 15 0.03
39 1 0.00
40 1 0.00
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (35 bp):
TGAGTCAGAAAATGAAAATGACTAAGATTAAATCA
Found at i:5107870 original size:70 final size:71
Alignment explanation
Indices: 5107644--5108422 Score: 298
Period size: 70 Copynumber: 11.0 Consensus size: 71
5107634 AGTCAGAAAA
* * * * * *
5107644 AAAATGACCTA-GATTAAAGCACGAGCCAAAAAATGAAAATGACTA-A-GATTAAACCATG-AGT
1 AAAATGACC-AGGATTAAATCATGAGTCAAAAAATGAAAA--ACAACAGGATTAAATCACGAAGT
* *
5107705 TAGAAAATG
63 CAAAAAATG
* ** * * * * *
5107714 GAAATGACCAGGATTAAATCACCAGTCAGAAAAA-CAAAAATGAACAGGATTAAACCATG-GGTC
1 AAAATGACCAGGATTAAATCATGAGTCA-AAAAATGAAAAA-CAACAGGATTAAATCACGAAGTC
5107777 AAAAAATG
64 AAAAAATG
**
5107785 AAACA--ACCAAAATTAAATCATGAGTCAAAAAATGAAAAA-AACAAGGATTAAATCACGAA-TC
1 AAA-ATGACCAGGATTAAATCATGAGTCAAAAAATGAAAAACAAC-AGGATTAAATCACGAAGTC
*
5107846 AGAAAATG
64 AAAAAATG
* *** *
5107854 AAAATTACCAGGATTAAATCATGAGTCAGGGAAT-AAAAACAATAGGAATTAAAT--CGTAAGTC
1 AAAATGACCAGGATTAAATCATGAGTCAAAAAATGAAAAACAACAGG-ATTAAATCACG-AAGTC
5107916 AAAAAATG
64 AAAAAATG
* * ** * * *
5107924 AAAATGGCTAAAATTAAATCATGAGTCAGAAAA-CAAAAACAACAGAGATTAAATCA-TAAGTCA
1 AAAATGACCAGGATTAAATCATGAGTCAAAAAATGAAAAACAACAG-GATTAAATCACGAAGTCA
5107987 AAAAATG
65 AAAAATG
* * * *
5107994 AAAATGATCAGGATTAAACCGTGAGTCAAAAAATG-AAAACGATC-GAGATTAAATCAC-AAGTC
1 AAAATGACCAGGATTAAATCATGAGTCAAAAAATGAAAAAC-AACAG-GATTAAATCACGAAGTC
*
5108056 AGAAAATG
64 AAAAAATG
** * * ** * * *
5108064 AAAAACAACC-GTCATTAAATCATGAGTCAGAGAAATGAAAATGATC-GATATTAAATCAC-ATG
1 -AAAATGACCAG-GATTAAATCATGAGTCA-AAAAATGAAAAACAACAG-GATTAAATCACGAAG
* *
5108126 TCAAAAATTA
62 TCAAAAAATG
* * * * * * ** * *
5108136 AAAACT-ACTTA-GAATAAATCATGAGTCAGAAAATCAAAACCACCAAAACTAAATCAC-ATGTC
1 AAAA-TGAC-CAGGATTAAATCATGAGTCAAAAAATGAAAAACAACAGGATTAAATCACGAAGTC
* *
5108198 AGAGAATG
64 AAAAAATG
* * * * * *
5108206 AAAAATGACC-GAAATTAAATCATGAGTTAAAAAAT-AAAAATGATCGGGATTTGAAGA-CTATG
1 -AAAATGACCAG-GATTAAATCATGAGTCAAAAAATGAAAAA-CAACAGGA-TT-AA-ATC-ACG
5108268 AAGTCAAAAAAATG
59 AAGTC-AAAAAATG
* * * * * * * ***
5108282 AAAATGACCTGTATTAAA-CTACGAGTTAGAAAA--AAAAAGATC-GAGATT-AATTGTGAA-TC
1 AAAATGACCAGGATTAAATC-ATGAGTCAAAAAATGAAAAACAACAG-GATTAAATCACGAAGTC
5108341 AAAAAATG
64 AAAAAATG
* * * * *
5108349 AAAACGACCAAGATTAAACCATGAGATCAAGAAAT-AAAAACAGACCAGAGATTAAACCACG-AG
1 AAAATGACCAGGATTAAATCATGAG-TCAAAAAATGAAAAACA-A-CAG-GATTAAATCACGAAG
5108412 TC-AAAAATG
62 TCAAAAAATG
5108421 AA
1 AA
5108423 TACAATCGAG
Statistics
Matches: 543, Mismatches: 113, Indels: 104
0.71 0.15 0.14
Matches are distributed among these distances:
67 26 0.05
68 15 0.03
69 52 0.10
70 236 0.43
71 101 0.19
72 51 0.09
73 17 0.03
74 8 0.01
75 30 0.06
76 7 0.01
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (71 bp):
AAAATGACCAGGATTAAATCATGAGTCAAAAAATGAAAAACAACAGGATTAAATCACGAAGTCAA
AAAATG
Found at i:5108117 original size:36 final size:35
Alignment explanation
Indices: 5107599--5108713 Score: 245
Period size: 35 Copynumber: 31.7 Consensus size: 35
5107589 TTAAACTACA
* * *
5107599 AGTCAGAAAATGAAAACAAGT-GGGATT-AAGCATTG
1 AGTCAGAAAATGAAAACGA-TCGAGATTAAATCA-TG
* * * * *
5107634 AGTCAGAAAA--AAAATGACCTAGATTAAAGCACG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * * * *
5107667 AGCCAAAAAATGAAAATGA-CTAAGATTAAACCATG
1 AGTCAGAAAATGAAAACGATC-GAGATTAAATCATG
* * * * **
5107702 AGTTAGAAAATGGAAATGA-CCAGGATTAAATCACC
1 AGTCAGAAAATGAAAACGATCGA-GATTAAATCATG
** * * *
5107737 AGTCAGAAAAACAAAAATGAAC-AGGATTAAACCATG
1 AGTCAG-AAAATGAAAACGATCGA-GATTAAATCATG
* * * * * *
5107773 GGTCAAAAAATG-AAACAACCAAAATTAAATCATG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * * * *
5107807 AGTCAAAAAATGAAAA-AAACAAGGATTAAATCACG
1 AGTCAGAAAATGAAAACGATCGA-GATTAAATCATG
* ** *
5107842 AATCAGAAAATGAAAATTA-CCAGGATTAAATCATG
1 AGTCAGAAAATGAAAACGATCGA-GATTAAATCATG
** * * * * *
5107877 AGTCAGGGAATAAAAACAATAG-GAATTAAATCGTA
1 AGTCAGAAAATGAAAACGATCGAG-ATTAAATCATG
* * * * *
5107912 AGTCAAAAAATGAAAATG-GCTAAAATTAAATCATG
1 AGTCAGAAAATGAAAACGATC-GAGATTAAATCATG
** * *
5107947 AGTCAGAAAACAAAAAC-AACAGAGATTAAATCATA
1 AGTCAGAAAATGAAAACGATC-GAGATTAAATCATG
* * * *
5107982 AGTCAAAAAATGAAAATGATC-AGGATTAAACCGTG
1 AGTCAGAAAATGAAAACGATCGA-GATTAAATCATG
* **
5108017 AGTCAAAAAATGAAAACGATCGAGATTAAATCACA
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * **
5108052 AGTCAGAAAATGAAAAACAACCGTCATTAAATCATG
1 AGTCAGAAAATG-AAAACGATCGAGATTAAATCATG
* * *
5108088 AGTCAGAGAAATGAAAATGATCGATATTAAATCA-C
1 AGTCAGA-AAATGAAAACGATCGAGATTAAATCATG
* * * *
5108123 ATGTCA-AAAATTAAAAACTA-CTTAGAATAAATCATG
1 A-GTCAGAAAA-TGAAAACGATC-GAGATTAAATCATG
* * * * * * *
5108159 AGTCAGAAAATCAAAACCACCAAAACTAAATCA-C
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * * *
5108193 ATGTCAGAGAATGAAAAATGACCGAAATTAAATCATG
1 A-GTCAGAAAATG-AAAACGATCGAGATTAAATCATG
* * * * *
5108230 AGTTAAAAAATAAAAATGATCGGGATTTGAAGA-CTATG
1 AGTCAGAAAATGAAAACGATCGAGA-TT-AA-ATC-ATG
* * * * *
5108268 AAGTCAAAAAAATGAAAATGACCTG-TATTAAA-CTACG
1 -AGTC-AGAAAATGAAAACGATC-GAGATTAAATC-ATG
* * **
5108305 AGTTAGAAAA--AAAAAGATCGAGATT-AATTGTG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * * * *
5108337 AATCAAAAAATGAAAACGACCAAGATTAAACCATG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* * * *
5108372 AGATCA-AGAAATAAAAACAGACCAGAGATTAAACCACG
1 AG-TCAGA-AAATGAAAAC-GATC-GAGATTAAATCATG
* * *
5108410 AGTCA-AAAATGAATACAATCGAG-TT-AATCACGG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCA-TG
* * * *
5108443 AGTTA-AGAAATGAAAACAATCGGGGTTAAATCATG
1 AGTCAGA-AAATGAAAACGATCGAGATTAAATCATG
* * * * * *
5108478 AGTCA-AGAAACG-ACACGACCAATATTAAATCACG
1 AGTCAGA-AAATGAAAACGATCGAGATTAAATCATG
* * * *
5108512 CAATCAGAAAA-AAAAATGATCCGGGATTAAAATCACT-
1 -AGTCAGAAAATGAAAACGAT-CGAGATT-AAATCA-TG
* * * ** ** *
5108549 AGTCAAAAAATAAAAAATGATAAAGATTAACCCAATCA
1 AGTCAGAAAAT-GAAAACGATCGAGATTAAATC-AT-G
* * * * *
5108587 AGTTAAAAAATTAAAATGAACCGAGATTAAA-CACT-
1 AGTCAGAAAATGAAAACG-ATCGAGATTAAATCA-TG
*
5108622 AG-CTAGAAAA-GAAAATGATCGAGATTAAA-CATTG
1 AGTC-AGAAAATGAAAACGATCGAGATTAAATCA-TG
* * * * * *
5108656 AGTTAGAAAATGAAAATGATTGGGATTAAACCACG
1 AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
* *
5108691 AGTCAAAAAATGAAAATGATCGA
1 AGTCAGAAAATGAAAACGATCGA
5108714 AAAATGAAAA
Statistics
Matches: 802, Mismatches: 209, Indels: 138
0.70 0.18 0.12
Matches are distributed among these distances:
32 15 0.02
33 50 0.06
34 103 0.13
35 370 0.46
36 153 0.19
37 42 0.05
38 47 0.06
39 5 0.01
40 16 0.02
41 1 0.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (35 bp):
AGTCAGAAAATGAAAACGATCGAGATTAAATCATG
Found at i:5108401 original size:38 final size:35
Alignment explanation
Indices: 5108342--5108419 Score: 104
Period size: 38 Copynumber: 2.2 Consensus size: 35
5108332 TTGTGAATCA
* *
5108342 AAAAATGAAAACGACCAAGATTAAACCATGAGATC
1 AAAAATAAAAACGACCAAGATTAAACCACGAGATC
5108377 AAGAAATAAAAACAGACCAGAGATTAAACCACGAG-TC
1 AA-AAATAAAAAC-GACCA-AGATTAAACCACGAGATC
5108414 AAAAAT
1 AAAAAT
5108420 GAATACAATC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
35 2 0.05
36 13 0.34
37 9 0.24
38 14 0.37
ACGTcount: A:0.56, C:0.17, G:0.14, T:0.13
Consensus pattern (35 bp):
AAAAATAAAAACGACCAAGATTAAACCACGAGATC
Found at i:5108639 original size:34 final size:36
Alignment explanation
Indices: 5108593--5108674 Score: 107
Period size: 34 Copynumber: 2.4 Consensus size: 36
5108583 ATCAAGTTAA
*
5108593 AAAATTAAAATGAACCGAGATTAAACACT-AGCTAG
1 AAAATGAAAATGAACCGAGATTAAACACTGAGCTAG
* * *
5108628 AAAA-GAAAATG-ATCGAGATTAAACATTGAGTTAG
1 AAAATGAAAATGAACCGAGATTAAACACTGAGCTAG
5108662 AAAATGAAAATGA
1 AAAATGAAAATGA
5108675 TTGGGATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 14 0.35
34 15 0.38
35 11 0.28
ACGTcount: A:0.54, C:0.09, G:0.17, T:0.21
Consensus pattern (36 bp):
AAAATGAAAATGAACCGAGATTAAACACTGAGCTAG
Found at i:5108966 original size:35 final size:35
Alignment explanation
Indices: 5108739--5109008 Score: 111
Period size: 35 Copynumber: 7.7 Consensus size: 35
5108729 TGATCGGGAC
* ** *
5108739 TAAACCACGAGTTAGGAAATGAATGTGACCAG-TT
1 TAAACCACGAGTTAGAAAATGAAAATGACCAGAAT
* * * * ** *
5108773 TGAATCATGAGTCA-AGAAATGAAAATGACTGGGAT
1 TAAACCACGAGTTAGA-AAATGAAAATGACCAGAAT
** * ** * *
5108808 TAAAGTACGAGTTAAAAAATGAAAAACAACCTGGAT
1 TAAACCACGAGTTAGAAAATG-AAAATGACCAGAAT
* * * ** * * *
5108844 TAAACCATGAGTCAAAAAATGAAAACAAGCGGGAT
1 TAAACCACGAGTTAGAAAATGAAAATGACCAGAAT
* * *
5108879 TAAA-CATTGAGTCAGAAAAAGAAAATGACCTAG-AT
1 TAAACCA-CGAGTTAGAAAATGAAAATGACC-AGAAT
* ** *
5108914 GT-AAGCACGAGCCAGAAAATGGAAATGACCA-AGAT
1 -TAAACCACGAGTTAGAAAATGAAAATGACCAGA-AT
*
5108949 TAAACCATGAGTTAGAAAATGAAAATGACCAGAAT
1 TAAACCACGAGTTAGAAAATGAAAATGACCAGAAT
* * *
5108984 TAAGCTACGAGTTAGAAAATAAAAA
1 TAAACCACGAGTTAGAAAATGAAAA
5109009 CGGTAAAAAA
Statistics
Matches: 180, Mismatches: 44, Indels: 23
0.73 0.18 0.09
Matches are distributed among these distances:
34 26 0.14
35 121 0.67
36 33 0.18
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.19
Consensus pattern (35 bp):
TAAACCACGAGTTAGAAAATGAAAATGACCAGAAT
Found at i:5109392 original size:35 final size:34
Alignment explanation
Indices: 5109353--5109433 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 34
5109343 TATAAATCGC
*
5109353 GAGTCAAAAAAAAAATAATCGAGGATTAAAAC-CAT
1 GAGTCAAAAAAAAAACAA-CGAGGATT-AAACGCAT
* * *
5109388 GAGTCAAAAATGAAAACGACTAGGATTAAACGCAT
1 GAGTCAAAAA-AAAAACAACGAGGATTAAACGCAT
5109423 GAGTCAAAAAA
1 GAGTCAAAAAA
5109434 TGAATACAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 4 0.10
35 30 0.77
36 5 0.13
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.16
Consensus pattern (34 bp):
GAGTCAAAAAAAAAACAACGAGGATTAAACGCAT
Found at i:5109920 original size:104 final size:106
Alignment explanation
Indices: 5109806--5110056 Score: 253
Period size: 104 Copynumber: 2.4 Consensus size: 106
5109796 ATGAGTCAAG
* * *
5109806 AAATGAAAATGACTGAGATTAAAGTACGAGTTAAAAAATGAAAAAAAGTAGGATTAAAC-ATTGT
1 AAATGAAAATGACTGAGATTAAAGTACGAGTTAAAAAATGAAAAAAACTAGGATTAAACTACT-A
* **
5109870 GTCAG-AAAA-AAAAATGACCT-AGATTAATGCACGAGCCAGA
65 GTCAGAAAAAGAAAAATGA-ATGAGATTAAACCACGAGCCAGA
* * ** * * * ** *
5109910 AAATGGAAATGACTAAGATTAAACCATGAGTCAAAAAATGGAAATGACTGGGATTAAACTACTAG
1 AAATGAAAATGACTGAGATTAAAGTACGAGTTAAAAAATGAAAAAAACTAGGATTAAACTACTAG
* *
5109975 TCAGAAAAAGAAAAATGAATGAGATTAAACCATGAGTCAGA
66 TCAGAAAAAGAAAAATGAATGAGATTAAACCACGAGCCAGA
*
5110016 AAATGAAAATGACTG-GAATT-AAGTTACGAGTTAGAAAATGA
1 AAATGAAAATGACTGAG-ATTAAAG-TACGAGTTAAAAAATGA
5110057 GAACGATAAA
Statistics
Matches: 115, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
104 53 0.46
105 10 0.09
106 52 0.45
ACGTcount: A:0.50, C:0.09, G:0.20, T:0.21
Consensus pattern (106 bp):
AAATGAAAATGACTGAGATTAAAGTACGAGTTAAAAAATGAAAAAAACTAGGATTAAACTACTAG
TCAGAAAAAGAAAAATGAATGAGATTAAACCACGAGCCAGA
Found at i:5109991 original size:36 final size:35
Alignment explanation
Indices: 5109795--5110037 Score: 140
Period size: 35 Copynumber: 6.9 Consensus size: 35
5109785 CAGTTTGAAT
* * *
5109795 CATGAGTCA-AGAAATGAAAATGACTGAGATTAAAG
1 CATGAGTCAGA-AAAAGAAAATGACTGGGATTAAAC
* * * ** * *
5109830 TACGAGTTA-AAAAATGAAAAAAAGTAGGATTAAA-
1 CATGAGTCAGAAAAA-GAAAATGACTGGGATTAAAC
* * **
5109864 CATTGTGTCAGAAAAA-AAAATGACCT-AGATTAATG
1 CA-TGAGTCAGAAAAAGAAAATGA-CTGGGATTAAAC
* * * * **
5109899 CACGAGCCAGAAAATGGAAATGACTAAGATTAAAC
1 CATGAGTCAGAAAAAGAAAATGACTGGGATTAAAC
*
5109934 CATGAGTCA-AAAAATGGAAATGACTGGGATTAAAC
1 CATGAGTCAGAAAAA-GAAAATGACTGGGATTAAAC
* * *
5109969 TACT-AGTCAGAAAAAGAAAAATGAATGAGATTAAAC
1 CA-TGAGTCAGAAAAAG-AAAATGACTGGGATTAAAC
* *
5110005 CATGAGTCAGAAAATGAAAATGACTGGAATTAA
1 CATGAGTCAGAAAAAGAAAATGACTGGGATTAA
5110038 GTTACGAGTT
Statistics
Matches: 157, Mismatches: 39, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
34 30 0.19
35 88 0.56
36 39 0.25
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.20
Consensus pattern (35 bp):
CATGAGTCAGAAAAAGAAAATGACTGGGATTAAAC
Found at i:5110052 original size:71 final size:71
Alignment explanation
Indices: 5109795--5110053 Score: 200
Period size: 71 Copynumber: 3.7 Consensus size: 71
5109785 CAGTTTGAAT
*
5109795 CATGAGTCA-AGAAATGAAAATGACT-GAGATTAAAG-TACGAGTTA-AAAAATGAAAAA--AA-
1 CATGAGTCAGA-AAATGAAAATGACTGGA-ATT-AAGTTACGAGTCAGAAAAA-GAAAAATGAAT
5109853 GTAGGATTAAA-
62 G-A-GATTAAAC
* * * * * * * * *
5109864 CATTGTGTCAGAAAA-AAAAATGACCTAG-ATTAA-TGCACGAGCCAGAAAATG-GAAATGACTA
1 CA-TGAGTCAGAAAATGAAAATGA-CTGGAATTAAGT-TACGAGTCAGAAAAAGAAAAATGAATG
5109925 AGATTAAAC
63 AGATTAAAC
* * * ** *
5109934 CATGAGTCAAAAAATGGAAATGACTGGGATTAAACTACTAGTCAGAAAAAGAAAAATGAATGAGA
1 CATGAGTCAGAAAATGAAAATGACTGGAATTAAGTTACGAGTCAGAAAAAGAAAAATGAATGAGA
5109999 TTAAAC
66 TTAAAC
*
5110005 CATGAGTCAGAAAATGAAAATGACTGGAATTAAGTTACGAGTTAGAAAA
1 CATGAGTCAGAAAATGAAAATGACTGGAATTAAGTTACGAGTCAGAAAA
5110054 TGAGAACGAT
Statistics
Matches: 146, Mismatches: 29, Indels: 28
0.72 0.14 0.14
Matches are distributed among these distances:
68 5 0.03
69 39 0.27
70 42 0.29
71 60 0.41
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.20
Consensus pattern (71 bp):
CATGAGTCAGAAAATGAAAATGACTGGAATTAAGTTACGAGTCAGAAAAAGAAAAATGAATGAGA
TTAAAC
Found at i:5110247 original size:35 final size:35
Alignment explanation
Indices: 5110198--5110917 Score: 216
Period size: 35 Copynumber: 20.5 Consensus size: 35
5110188 AACGATCGCA
* **
5110198 AGTCAAAAAAATGAAAATGATTG-CGATTAAACTGTG
1 AGTC-AAAAAATGAAAACGA-TGACGATTAAACCATG
*
5110234 AGTCAAAAAATGAAAACGATGAGGATTAAACCATG
1 AGTCAAAAAATGAAAACGATGACGATTAAACCATG
*** **
5110269 AGTCAAAAAATGAAAAC-AACCCAGATTAAACCACA
1 AGTCAAAAAATGAAAACGATGAC-GATTAAACCATG
* * * * **
5110304 AGTCAGAAAATAAAAACGATTG-GGATTAAACTACCC
1 AGTCAAAAAATGAAAACGA-TGACGATTAAACCA-TG
* * * *
5110340 A-TCAGAAAA-GAAAAATGAT-AGGGATTAAACCACG
1 AGTCAAAAAATG-AAAACGATGA-CGATTAAACCATG
** * * *
5110374 AGTCAAAAAATGAAAAACGACCATGATTAGACCACG
1 AGTCAAAAAATG-AAAACGATGACGATTAAACCATG
* *
5110410 AGTCAAAAAATGAAAATGACT-ATGATTAAACCATG
1 AGTCAAAAAATGAAAACGA-TGACGATTAAACCATG
** * * *
5110445 AGTCAAAAAATGAAAATAAT-CCTTATTAAGCCATG
1 AGTCAAAAAATGAAAACGATGAC-GATTAAACCATG
* * *
5110480 AGTCAAAAAATGAAAATGA-GCCAGATTAAACCATA
1 AGTCAAAAAATGAAAACGATGAC-GATTAAACCATG
* * ** * **
5110515 AGTCAAAAAATGGAAACAACCAGGATTAAACCACC
1 AGTCAAAAAATGAAAACGATGACGATTAAACCATG
* * *
5110550 AGTCAAAAAAAGAAAAACGATCAGGATTAAACCATG
1 AGTCAAAAAATG-AAAACGATGACGATTAAACCATG
* ** * * * * *
5110586 GGTCAGGAAATGAAAATGA-AAGGGATTAGACCGTG
1 AGTCAAAAAATGAAAACGATGA-CGATTAAACCATG
** * * * * ** ** * *
5110621 TCTTAGATAATGAAAACAACCAAAATTAAATCACG
1 AGTCAAAAAATGAAAACGATGACGATTAAACCATG
* ** * *
5110656 AGTCAAAAAATGAAAGA-AACAAGGATTAAATCACA-A
1 AGTCAAAAAATGAAA-ACGATGACGATTAAA-C-CATG
* * * * * *
5110692 ATTGAAAAAATGAAAATGACT-AGGAATAAATCATG
1 AGTCAAAAAATGAAAACGA-TGACGATTAAACCATG
*** * * * *
5110727 AGTCAGGGAATAAAAACGATG-GGAATTAAACCGTA
1 AGTCAAAAAATGAAAACGATGACG-ATTAAACCATG
* ** ** *
5110762 AGTCAAAAAATGAAAATGACCAAAATTAAATCATG
1 AGTCAAAAAATGAAAACGATGACGATTAAACCATG
* ** * *
5110797 AGTCAGAAAACAAAAACAACCT-A-GATTAAACCACG
1 AGTCAAAAAATGAAAACGA--TGACGATTAAACCATG
* * * **
5110832 AGTCAAAAAAT-ACAAATGATTAGGATTAAACTGTG
1 AGTCAAAAAATGA-AAACGATGACGATTAAACCATG
* *
5110867 AGTCAAAAAATGAAAACGATCGA-GATTAAATCACG
1 AGTCAAAAAATGAAAACGAT-GACGATTAAACCATG
5110902 AGTCAAAAAATGAAAA
1 AGTCAAAAAATGAAAA
5110918 ACAACCGTCA
Statistics
Matches: 512, Mismatches: 138, Indels: 69
0.71 0.19 0.10
Matches are distributed among these distances:
33 1 0.00
34 15 0.03
35 402 0.79
36 91 0.18
37 3 0.01
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (35 bp):
AGTCAAAAAATGAAAACGATGACGATTAAACCATG
Found at i:5110263 original size:131 final size:130
Alignment explanation
Indices: 5110072--5110323 Score: 292
Period size: 131 Copynumber: 1.9 Consensus size: 130
5110062 ATAAAAAAAT
* * ** * *
5110072 AAAAAAGAAAAATGATTGGGATTAAACCGTAAGTTAAAAAATGAATGCGATCGGGTTTAAATAAC
1 AAAAAAGAAAAATGATTGCGATTAAACCGTAAGTCAAAAAATGAAAACGATCGGGATTAAACAAC
* * * ** * *
5110137 GAGTCAAGAAATTAAAACAATCGTGATTAAAACACGAGTCAAAAAATGAAGAACGATCGCAAGTC
66 GAGTCAAAAAATGAAAACAACCCAGATTAAAACACAAGTCAAAAAAT-AAAAACGATCGCAAGTC
5110202 A
130 A
* * *
5110203 AAAAAATG-AAAATGATTGCGATTAAACTGTGAGTCAAAAAATGAAAACGAT-GAGGATTAAACC
1 AAAAAA-GAAAAATGATTGCGATTAAACCGTAAGTCAAAAAATGAAAACGATCG-GGATTAAACA
* * *
5110266 ATGAGTCAAAAAATGAAAACAACCCAGATTAAACCACAAGTCAGAAAATAAAAACGAT
64 ACGAGTCAAAAAATGAAAACAACCCAGATTAAAACACAAGTCAAAAAATAAAAACGAT
5110324 TGGGATTAAA
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
130 9 0.09
131 90 0.90
132 1 0.01
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (130 bp):
AAAAAAGAAAAATGATTGCGATTAAACCGTAAGTCAAAAAATGAAAACGATCGGGATTAAACAAC
GAGTCAAAAAATGAAAACAACCCAGATTAAAACACAAGTCAAAAAATAAAAACGATCGCAAGTCA
Found at i:5110282 original size:70 final size:70
Alignment explanation
Indices: 5110198--5113754 Score: 577
Period size: 70 Copynumber: 51.3 Consensus size: 70
5110188 AACGATCGCA
** *
5110198 AGTCAAAAAAATGAAAATGATTGCGATTAAACTGTGAGTCAAAAAATGAAAACGATGAGGATTAA
1 AGTC-AAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
*
5110263 ACCATG
65 ACCACG
* *** ** * * **
5110269 AGTCAAAAAATGAAAA-CAACCCAGATTAAACCACAAGTCAGAAAATAAAAACGATTGGGATTAA
1 AGTCAAAAAATGAAAATGATTGC-GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
* *
5110333 ACTACCC
65 ACCA-CG
* * * * * *
5110340 A-TCAGAAAA-GAAAAATGATAGGGATTAAACCACGAGTCAAAAAATGAAAAACGACCATGATTA
1 AGTCAAAAAATG-AAAATGATTGCGATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTA
*
5110403 GACCACG
64 AACCACG
* ** ** *** *
5110410 AGTCAAAAAATGAAAATGACTATGATTAAACCATGAGTCAAAAAATGAAAATAATCCTTATTAAG
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAA
*
5110475 CCATG
66 CCACG
* * * *
5110480 AGTCAAAAAATGAAAATGA--GCCAGATTAAACCATAAGTCAAAAAATGGAAACAACCAGGATTA
1 AGTCAAAAAATGAAAATGATTG-C-GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
*
5110543 AACCACC
64 AACCACG
* * * * ** * *
5110550 AGTCAAAAAAAGAAAAACGATCAG-GATTAAACCATGGGTCAGGAAATGAAAATGA-AAGGGATT
1 AGTCAAAAAATG-AAAATGAT-TGCGATTAAACCATGAGTCAAAAAATGAAAACGATCA-GGATT
*
5110613 AGA-C-CG
63 AAACCACG
* * * ** ***** * * *
5110619 TGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCAAAAAATG-AAA-GAAACAAGGAT
1 AGTC--AAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACG-ATC-AGGAT
* *
5110682 TAAATCACAA
62 TAAACCAC-G
* * * * * *** * *
5110692 ATTGAAAAAATGAAAATGACTAG-GAATAAATCATGAGTCAGGGAATAAAAACGAT-GGGAATTA
1 AGTCAAAAAATGAAAATGA-TTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGG-ATTA
***
5110755 AACCGTA
64 AACCACG
***** * * ** * *
5110762 AGTCAAAAAATGAAAATGACCAAAATTAAATCATGAGTCAGAAAACAAAAACAACCTA-GATTAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAA
5110826 ACCACG
65 ACCACG
**
5110832 AGTCAAAAAAT-ACAAATGATTAG-GATTAAACTGTGAGTCAAAAAATGAAAACGATC-GAGATT
1 AGTCAAAAAATGA-AAATGATT-GCGATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATT
*
5110894 AAATCACG
63 AAACCACG
** ** * * *
5110902 AGTCAAAAAATGAAAAACA-ACCGTCATTAAATCATGAGTCAGAGAAATGAAAATGATC--GATA
1 AGTCAAAAAATGAAAATGATTGCG--ATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGAT-
*
5110964 GTAAATCAC-
62 -TAAACCACG
** * * * * * * * *
5110973 ATGTC-AAAAATCGAAAACT-ATTAAGAATAAATCATGAGTCAGAAAATCAAAACCA-CCGAAAC
1 A-GTCAAAAAAT-GAAAA-TGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GAT
*
5111035 TAAATCAC-
62 TAAACCACG
* * ** ** ** * * ** *
5111043 ATGTCAGAGAATGAAAAATGACCGAAATTAAATAAGGAGTTAAAAAATGAAAATTATCGGGATTA
1 A-GTCAAAAAATG-AAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
****
5111108 AATTGTG
64 AACCACG
** * * * * * *
5111115 AGTCAAAAAATGAAAATGA-CACGTATTAAACTATGAGTTAGAAAATAAAAAAGA-CCGAGATTA
1 AGTCAAAAAATGAAAATGATTGCG-ATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTA
*
5111178 AATCAC-
64 AACCACG
* * * *
5111184 -GTC--AAAATGAAAACCGA----GATT--A-C------CAAAAAATAAAAATGACCAGGATTAA
1 AGTCAAAAAATGAAAA-TGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
5111233 ACCACG
65 ACCACG
* ** * * * * * * * *
5111239 AGTCAAAAAATGAATACAATCGGGTTTAAATCACGAGTTAAGAAATGAAAACAATCGAGG-TTAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAA
* *
5111303 ATCATG
65 ACCACG
* ** * ** * * * * *
5111309 AGTCAAGAAATGACGACGATTGATATTAAATCACGAATCATAAATAA--AAAATGATCGGGATTA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCA-AAA-AATGAAAACGATCAGGATTA
* *
5111372 AATCACT
64 AACCACG
* * * *
5111379 AGTCAAAAAATAAAAATGATAAG-GATTAAACCACGAGTC-AAAAATGAAAATGATC-GAGATTA
1 AGTCAAAAAATGAAAATGAT-TGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTA
*
5111441 AACCACT
64 AACCACG
* * * * * * **
5111448 AG-CTAGAAAAA-GAAAAATGATCGAGATTAAA-CATTAAGTTAGAAAATGAAAATGATTGGGAT
1 AGTC-A-AAAAATG-AAAATGATTGCGATTAAACCA-TGAGTCAAAAAATGAAAACGATCAGGAT
5111510 TAAACCACG
62 TAAACCACG
* * * * *
5111519 AGTC-AAAAATGAAAA-CAAT-C-A--AAA-AATGA--AAAAGAAATG--ATC-A--A-GATTAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAA-AAATGAAAACGATCAGGATTAA
**
5111569 AGTACG
65 ACCACG
* ** * * ** * * *
5111575 AGTTAAAAAATGAAAAACAACCTG-GATTAAACCATGAGTCAGAAAACAAAAACAAGCTGGATTA
1 AGTCAAAAAATG-AAAATGA-TTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
*
5111639 AA-CATTG
64 AACCA-CG
* * * * ** * * * * * *
5111646 AGTCAGAAAAA-GAAAATGACCT-AGATGAAAGCACAAGCCAGAAAATGGAAATGACCAAGATTA
1 AGTCA-AAAAATGAAAATGA-TTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
*
5111709 AACCATG
64 AACCACG
* * * * * *
5111716 AGTCAGAAAATGAAAATAATTG-GAATTAAGCTACGAGTTAAAAAATG-AAA--AT--GG--TAA
1 AGTCAAAAAATGAAAATGATTGCG-ATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
*
5111773 A--A-A
65 ACCACG
* * * * * ** * *
5111776 AAT-GAAAAA-GAAAAATGAATGGGATTAAACCATGAGTCAGAAAATGAATGCGATCGGGTTTAA
1 AGTCAAAAAATG-AAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
* *
5111839 ATCAAG
65 ACCACG
* * * * * * * * * *
5111845 GGTCAAGAAATGAAAACGGTCGTGATTAAAACACT-AGTAAAAAAATGACGAACGA-CTGAGATT
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCA-TGAGTCAAAAAATGA-AAACGATCAG-GATT
*
5111908 AAACCACA
63 AAACCACG
* *** * * ***
5111916 AATCAAAAAAATGAAAATGACAACGATTAAACCGTGAGTCAAAAAATGAAAATGAGGGGGATTAA
1 AGTC-AAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
*
5111981 ACCATG
65 ACCACG
* *** * *
5111987 AGTCAAAAAATGAAAA-CAACCCAGATTAAACCATAAGTCAGAAAATGAAAACGAGT-AGGATTA
1 AGTCAAAAAATGAAAATGATTGC-GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTA
*
5112050 AACCACA
64 AACCACG
* * ** *
5112057 AGTCAAAAAATGAAAATGATTGGGATTAAACTACCCA-TCAAAAAAAGAAAACTGAT-AGGGATT
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCA-TGAGTCAAAAAATGAAAAC-GATCA-GGATT
5112120 AAACCACG
63 AAACCACG
* **** * * * * * *
5112128 AGTCAAAAAATGAAAAAACGACCATGATTAGACCACGAGTCAAAAAACGAAAATGA-CTATGATA
1 AGTCAAAAAATG--AAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATT
* *
5112192 AAATCGCG
63 AAACCACG
* * * * *
5112200 AGTCAAAAAAGGAAAACGATCGAGATTAAACCATGAGTCAAAAAATGAAAACGATTAAGGATTAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTAA
*
5112265 ACCACA
65 ACCACG
* ** * * * ** * * * *
5112271 AGTCAAAAAATGAATACAATCGGGTTTAATTCATGAGTTAAGAAATGAAAACAATCGGGATTAAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAA
* *
5112336 TCATG
66 CCACG
* * * * * * * * *
5112341 AGTCAAGAAAT-AACAACGACAT-AGATTAAATCACGAGTCAGAAATAA-G-AAATGACCGGGAT
1 AGTCAAAAAATGAA-AATGA-TTGCGATTAAACCATGAGTCA-AAA-AATGAAAACGATCAGGAT
* *
5112402 TAAATCACT
62 TAAACCACG
* * * *
5112411 AGTCAAAAAATGAAAACGATAAG-GATTAAACCACGAGTCAAAAAATGAAAATGATC-GAGATTA
1 AGTCAAAAAATGAAAATGAT-TGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTA
*
5112474 AACCACT
64 AACCACG
* * ** * * * *
5112481 AG-CTAGAAAAAGGAAAACGACCGGGATT-AATCATTAAGTCAAAAAATGAAAATGATC--GA--
1 AGTC-A-AAAAATGAAAATGATTGCGATTAAACCA-TGAGTCAAAAAATGAAAACGATCAGGATT
*
5112540 AAA--ATG
63 AAACCACG
* * * * * *** * * *
5112546 A--AAAAGAAATG---ATCGA----GACTAAACCACGAGTTAGAAAATGAATGTGACCA-GTTTG
1 AGTCAAA-AAATGAAAAT-GATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
* *
5112601 AATCATG
64 AACCACG
* * ** * * * * *
5112608 AGTCAAGAAATGAAAATGACTAG-GATTAAAGTACGAGTTAAAAAATGAAAAACAACCTGGATTA
1 AGTCAAAAAATGAAAATGA-TTGCGATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTA
**
5112672 AACCATT
64 AACCACG
* * * * *
5112679 AGTCAAAAAAAGAAAAACGA-T-CAGATTAAACCATGGGTCAGAAAATGAAAATGATC-GAGATT
1 AGTCAAAAAATG-AAAATGATTGC-GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATT
* *
5112741 AAACTATG
63 AAACCACG
* * * * * * ** * * * ** *
5112749 AGCCAAAAAATAAAAATGACTGAGAATAAATCGCGAGTTAGAAAATGAAAA-TAAGAGGGATTAG
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCA-GGATTAA
5112813 A-C-CG
65 ACCACG
* * * ***** * * *
5112817 TGTCTTAGATAATGAAACA--ACCAAAATTAAATCACGAGTCAAAAAATGAAAAC-AACAAGGAT
1 AGTC--AAAAAATGAAA-ATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGAT
*
5112879 TAAATCACG
62 TAAACCACG
* ** * * *** * * *
5112888 AATCGAAAAAATGAAAATGACCAG-GAATAAATCATGAGTCAGGGAAT-AAAAGCAATGAGAATT
1 AGTC-AAAAAATGAAAATGA-TTGCGATTAAACCATGAGTCAAAAAATGAAAA-CGATCAGGATT
***
5112951 AAACCGTA
63 AAACCACG
* ***** * * ** * * *
5112959 AGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAGAAAACAAAAACAACCAAGATTAAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAA
*
5113024 CCCCG
66 CCACG
* * * * *
5113029 AGTCAAAAAATGCAAATGATCTG-GATTAAATCGTGTGTCAAAAAATGAAAACGATCAAGATTAA
1 AGTCAAAAAATGAAAATGAT-TGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
* *
5113093 ATCACC
65 ACCACG
* ** ** * * *
5113099 AGTCAGAAAATGAAAAACA-ACCGTCATTAAATCATGAGTCAGAGAAATGAAAATGATC--GATA
1 AGTCAAAAAATGAAAATGATTGCG--ATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGAT-
*
5113161 TTAACTCAC-
62 TAAAC-CACG
* * * * * * ** *
5113170 ATGTC-AAAAATCGAAAACT-ATTGAGAATAAATCATGAGTCAGAAAATCAAAACCATCAAAACT
1 A-GTCAAAAAAT-GAAAA-TGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATT
*
5113233 AAATCAC-
63 AAACCACG
* * ***** * * * * *
5113240 ATGTCAGAGAATGAAAAATGACCAAAATTAAATCATGAGTTAAAAAATAAAAATGATCAAGATTA
1 A-GTCAAAAAATG-AAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTA
***
5113305 AACTGTG
64 AACCACG
** * * * * * *
5113312 AGTCAAAAAATGAAAATGA-CCCGTATTAAACTACGAGTTACAAAATAAAAAAGATC-GAGATTA
1 AGTCAAAAAATGAAAATGATTGCG-ATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTA
* **
5113375 AATCGTG
64 AACCACG
* * *
5113382 AGTCAAAAAATGAAAATGACTGAGATTAAACCATGAGTCAAAAAATAAAAACGA-CAAGGATTAA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAA
*
5113446 ACCATG
65 ACCACG
** * * * * * * * *
5113452 AGTCAAAAAAT-AAATACAATCGAGTTTAAATCATGAGTTAAGAAATGAAAACAATCGGGATTAA
1 AGTCAAAAAATGAAA-ATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAA
*
5113516 ATCACG
65 ACCACG
* * * * * * * * * *
5113522 AGTCAATAGATGACAACGACTGAGATTAAATCACGAGTCAGAAACAA--AAAATGACCAGGATTA
1 AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCA-AAA-AATGAAAACGATCAGGATTA
* *
5113585 AATCACT
64 AACCACG
* * * ** *
5113592 AGTCAAAAAATGAAAATGATAAG-GATTAAACCACGAGTCAGAAAATGAAAATTA-CCGAGATTA
1 AGTCAAAAAATGAAAATGAT-TGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTA
*
5113655 AACCACT
64 AACCACG
*** * * ** **
5113662 AG-CTAGAAAAA-GAAAAATGGCCGAGATCAAA-CATTGAGTCAAAAAACAAAAACGATTGGGAT
1 AGTC-A-AAAAATG-AAAATGATTGCGATTAAACCA-TGAGTCAAAAAATGAAAACGATCAGGAT
5113724 TAAACCACG
62 TAAACCACG
* * *
5113733 AGTCCAAAAATAAAAACGATTG
1 AGTCAAAAAATGAAAATGATTG
5113755 AAAAATTAAA
Statistics
Matches: 2541, Mismatches: 702, Indels: 487
0.68 0.19 0.13
Matches are distributed among these distances:
54 23 0.01
55 2 0.00
56 16 0.01
57 28 0.01
58 19 0.01
59 32 0.01
60 9 0.00
61 10 0.00
62 13 0.01
63 23 0.01
64 14 0.01
65 8 0.00
66 19 0.01
67 10 0.00
68 19 0.01
69 152 0.06
70 1313 0.52
71 649 0.26
72 149 0.06
73 32 0.01
74 1 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (70 bp):
AGTCAAAAAATGAAAATGATTGCGATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAA
CCACG
Found at i:5111246 original size:35 final size:35
Alignment explanation
Indices: 5111207--5113660 Score: 594
Period size: 35 Copynumber: 70.9 Consensus size: 35
5111197 CCGAGATTAC
* *
5111207 CAAAAAATAAAAATGACCAGGATTAAACCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* ** * * *
5111242 CAAAAAATGAATACAATCGGGTTTAAATCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * ** * *
5111277 TAAGAAATGAAAACAATCGAGG-TTAAATCATGAGT
1 CAAAAAATGAAAATGATC-AGGATTAAACCACGAGT
* ** * * * * *
5111312 CAAGAAATGACGACGAT-TGATATTAAATCACGAAT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * *
5111347 CATAAATAA--AAAATGATCGGGATTAAATCACTAGT
1 CA-AAA-AATGAAAATGATCAGGATTAAACCACGAGT
* *
5111382 CAAAAAATAAAAATGATAAGGATTAAACCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
*
5111417 C-AAAAATGAAAATGATC-GAGATTAAACCACTAG-
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
**
5111450 CTAGAAAAA-GAAAAATGATC-GAGATTAAA-CATTAAGT
1 C-A-AAAAATG-AAAATGATCAG-GATTAAACCA-CGAGT
* * **
5111487 TAGAAAATGAAAATGATTGGGATTAAACCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
** *
5111522 C-AAAAATGAAAACAATCA--A--AAA--ATGA--
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * **
5111548 AAAAGAAATG---AT---CAAGATTAAAGTACGAGT
1 CAAA-AAATGAAAATGATCAGGATTAAACCACGAGT
* ** * * *
5111578 TAAAAAATGAAAAACAACCTGGATTAAACCATGAGT
1 CAAAAAATG-AAAATGATCAGGATTAAACCACGAGT
* ** ** * * *
5111614 CAGAAAACAAAAACAAGCTGGATTAAA-CATTGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCA-CGAGT
* * * * *
5111649 CAGAAAAA-GAAAATGACCTA-GATGAAAGCACAAGC
1 CA-AAAAATGAAAATGATC-AGGATTAAACCACGAGT
* * * * *
5111684 CAGAAAATGGAAATGACCAAGATTAAACCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * * *
5111719 CAGAAAATGAAAATAAT-TGGAATTAAGCTACGAGT
1 CAAAAAATGAAAATGATCAGG-ATTAAACCACGAGT
* *
5111754 TAAAAAATGAAAATGGT-A--A--AAA--A--A-T
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * *
5111779 GAAAAAGA--AAAATGAAT-GGGATTAAACCATGAGT
1 CAAAAA-ATGAAAATG-ATCAGGATTAAACCACGAGT
* *** * * * * *
5111813 CAGAAAATGAATGCGATCGGGTTTAAATCAAGGGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * * *
5111848 CAAGAAATGAAAACGGTC-GTGATTAAAACACTAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * * * * *
5111883 AAAAAAATGACGAACGA-CTGAGATTAAACCACAAAT
1 CAAAAAATGA-AAATGATCAG-GATTAAACCACGAGT
* **
5111919 CAAAAAAATGAAAATGA-CAACGATTAAACCGTGAGT
1 C-AAAAAATGAAAATGATC-AGGATTAAACCACGAGT
*** *
5111955 CAAAAAATGAAAATGAGGGGGATTAAACCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
** * **
5111990 CAAAAAATGAAAACAACCCA-GATTAAACCATAAGT
1 CAAAAAATGAAAATGA-TCAGGATTAAACCACGAGT
* * *
5112025 CAGAAAATGAAAACGAGT-AGGATTAAACCACAAGT
1 CAAAAAATGAAAATGA-TCAGGATTAAACCACGAGT
** * *
5112060 CAAAAAATGAAAATGATTGGGATTAAACTACCCA-T
1 CAAAAAATGAAAATGATCAGGATTAAACCA-CGAGT
*
5112095 CAAAAAAAGAAAACTGAT-AGGGATTAAACCACGAGT
1 CAAAAAATGAAAA-TGATCA-GGATTAAACCACGAGT
* * * *
5112131 CAAAAAATGAAAAAACGACCATGATTAGACCACGAGT
1 CAAAAAATG--AAAATGATCAGGATTAAACCACGAGT
* * * * *
5112168 CAAAAAACGAAAATGA-CTATGATAAAATCGCGAGT
1 CAAAAAATGAAAATGATC-AGGATTAAACCACGAGT
* * *
5112203 CAAAAAAGGAAAACGATC-GAGATTAAACCATGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * *
5112238 CAAAAAATGAAAACGATTAAGGATTAAACCACAAGT
1 CAAAAAATGAAAATGA-TCAGGATTAAACCACGAGT
* ** * * ** *
5112274 CAAAAAATGAATACAATCGGGTTTAATTCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * ** * * *
5112309 TAAGAAATGAAAACAATCGGGATTAAATCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * *
5112344 CAAGAAAT-AACAACGA-CATAGATTAAATCACGAGT
1 CAAAAAATGAA-AATGATCA-GGATTAAACCACGAGT
* * * *
5112379 CAGAAATAA-G-AAATGACCGGGATTAAATCACTAGT
1 CA-AAA-AATGAAAATGATCAGGATTAAACCACGAGT
* *
5112414 CAAAAAATGAAAACGATAAGGATTAAACCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
*
5112449 CAAAAAATGAAAATGATC-GAGATTAAACCACTAG-
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * * * * **
5112483 CTAGAAAAAGGAAAACGACCGGGATT-AATCATTAAGT
1 C-A-AAAAATGAAAATGATCAGGATTAAACCA-CGAGT
*
5112520 CAAAAAATGAAAATGATC--GA--AAA--ATGA--
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* *
5112547 AAAAGAAATG---AT---C-GAGACTAAACCACGAGT
1 CAAA-AAATGAAAATGATCAG-GATTAAACCACGAGT
* * ** * * * * *
5112577 TAGAAAATGAATGTGACCA-GTTTGAATCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* **
5112611 CAAGAAATGAAAATGA-CTAGGATTAAAGTACGAGT
1 CAAAAAATGAAAATGATC-AGGATTAAACCACGAGT
* ** * * **
5112646 TAAAAAATGAAAAACAACCTGGATTAAACCATTAGT
1 CAAAAAATG-AAAATGATCAGGATTAAACCACGAGT
* * * *
5112682 CAAAAAAAGAAAAACGATCA-GATTAAACCATGGGT
1 CAAAAAATG-AAAATGATCAGGATTAAACCACGAGT
* * * *
5112717 CAGAAAATGAAAATGATC-GAGATTAAACTATGAGC
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * * * *
5112752 CAAAAAATAAAAATGA-CTGAGAATAAATCGCGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * ** * *
5112787 TAGAAAATGAAAAT-AAGAGGGATTAGA-C-CGTGT
1 CAAAAAATGAAAATGATCA-GGATTAAACCACGAGT
* * * ** *
5112820 CTTAGATAATGAAACA--ACCAAAATTAAATCACGAGT
1 C--AAAAAATGAAA-ATGATCAGGATTAAACCACGAGT
* * * *
5112856 CAAAAAATGAAAA-CAACAAGGATTAAATCACGAAT
1 CAAAAAATGAAAATGATC-AGGATTAAACCACGAGT
* * * *
5112891 CGAAAAAATGAAAATGACCAGGAATAAATCATGAGT
1 C-AAAAAATGAAAATGATCAGGATTAAACCACGAGT
*** * * ***
5112927 CAGGGAAT-AAAA-GCAATGAGAATTAAACCGTAAGT
1 CAAAAAATGAAAATG--ATCAGGATTAAACCACGAGT
* * ** * *
5112962 CAAAAAATAAAAATGACCAAAATTAAATCATGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* ** ** * * *
5112997 CAGAAAACAAAAACAACCAAGATTAAACCCCGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * ** *
5113032 CAAAAAATGCAAATGATCTGGATTAAATCGTGTGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * *
5113067 CAAAAAATGAAAACGATCAAGATTAAATCACCAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* ** * * * * *
5113102 CAGAAAATGAAAAACAACCGTCATTAAATCATGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* *
5113138 CAGAGAAATGAAAATGATC--GATATTAACTCAC-ATGT
1 CA-AAAAATGAAAATGATCAGGAT-TAAAC-CACGA-GT
* * * *
5113174 C-AAAAATCGAAAACT-AT-TGAGAATAAATCATGAGT
1 CAAAAAAT-GAAAA-TGATCAG-GATTAAACCACGAGT
* * ** ** * *
5113209 CAGAAAATCAAAACCATCAAAACTAAATCAC-ATGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGA-GT
* * * ** * *
5113244 CAGAGAATGAAAAATGACCAAAATTAAATCATGAGT
1 CAAAAAATG-AAAATGATCAGGATTAAACCACGAGT
* * * ***
5113280 TAAAAAATAAAAATGATCAAGATTAAACTGTGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * *
5113315 CAAAAAATGAAAATGACCCGTATTAAACTACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * * * **
5113350 TACAAAATAAAAAAGATC-GAGATTAAATCGTGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* *
5113385 CAAAAAATGAAAATGA-CTGAGATTAAACCATGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * *
5113420 CAAAAAATAAAAACGA-CAAGGATTAAACCATGAGT
1 CAAAAAATGAAAATGATC-AGGATTAAACCACGAGT
** * * *
5113455 CAAAAAAT-AAATACAATC-GAGTTTAAATCATGAGT
1 CAAAAAATGAAA-ATGATCAG-GATTAAACCACGAGT
* * ** * *
5113490 TAAGAAATGAAAACAATCGGGATTAAATCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * * * * *
5113525 CAATAGATGACAACGA-CTGAGATTAAATCACGAGT
1 CAAAAAATGAAAATGATCAG-GATTAAACCACGAGT
* * *
5113560 CAGAAACAA--AAAATGACCAGGATTAAATCACTAGT
1 CA-AAA-AATGAAAATGATCAGGATTAAACCACGAGT
*
5113595 CAAAAAATGAAAATGATAAGGATTAAACCACGAGT
1 CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
* * *
5113630 CAGAAAATGAAAATTA-CCGAGATTAAACCAC
1 CAAAAAATGAAAATGATCAG-GATTAAACCAC
5113661 TAGCTAGAAA
Statistics
Matches: 1807, Mismatches: 450, Indels: 324
0.70 0.17 0.13
Matches are distributed among these distances:
22 3 0.00
24 9 0.00
25 10 0.01
26 8 0.00
27 6 0.00
28 20 0.01
29 15 0.01
30 11 0.01
31 1 0.00
32 5 0.00
33 21 0.01
34 143 0.08
35 1187 0.66
36 304 0.17
37 59 0.03
38 5 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
CAAAAAATGAAAATGATCAGGATTAAACCACGAGT
Found at i:5112215 original size:143 final size:141
Alignment explanation
Indices: 5111868--5112289 Score: 370
Period size: 143 Copynumber: 3.0 Consensus size: 141
5111858 AAACGGTCGT
* * * * * * * *
5111868 GATTAAAACACTAGTAAAAAAATGACGAACGACT-GAGATTAAACCACAAATCAAAAAAATGAAA
1 GATTAAACCACAAGTCAAAAAACGA-AAACGACTAG-GATAAAACCACAAGTC-AAAAAAGGAAA
* * *** ** *
5111932 ATGA-CAACGATTAAACCGTGAGTCAAAAAATGAAAA-TGAGGGGGATTAAACCATGAGTCAAAA
63 ACGATCGA-GATTAAACCACCAGTCAAAAAATGAAAACTGATAGGGATTAAACCACGAGTCAAAA
5111995 AATGAAAACAACCCA
127 AATGAAAACAACCCA
* * * * * * *
5112010 GATTAAACCATAAGTCAGAAAATGAAAACGAGTAGGATTAAACCACAAGTCAAAAAATGAAAATG
1 GATTAAACCACAAGTCAAAAAACGAAAACGACTAGGATAAAACCACAAGTCAAAAAAGGAAAACG
* * * *
5112075 ATTGGGATTAAACTACCCA-TCAAAAAAAGAAAACTGATAGGGATTAAACCACGAGTCAAAAAAT
66 ATCGAGATTAAACCA-CCAGTCAAAAAATGAAAACTGATAGGGATTAAACCACGAGTCAAAAAAT
5112139 GAAAA-AACGACCA
130 GAAAACAAC--CCA
* * * * * * *
5112152 TGATTAGACCACGAGTCAAAAAACGAAAATGACTATGATAAAATCGCGAGTCAAAAAAGGAAAAC
1 -GATTAAACCACAAGTCAAAAAACGAAAACGACTAGGATAAAACCACAAGTCAAAAAAGGAAAAC
** * *
5112217 GATCGAGATTAAACCATGAGTCAAAAAATGAAAAC-GATTAAGGATTAAACCACAAGTCAAAAAA
65 GATCGAGATTAAACCACCAGTCAAAAAATGAAAACTGA-TAGGGATTAAACCACGAGTCAAAAAA
*
5112281 TGAATACAA
129 TGAAAACAA
5112290 TCGGGTTTAA
Statistics
Matches: 228, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
140 39 0.17
141 54 0.24
142 27 0.12
143 106 0.46
144 2 0.01
ACGTcount: A:0.53, C:0.15, G:0.16, T:0.16
Consensus pattern (141 bp):
GATTAAACCACAAGTCAAAAAACGAAAACGACTAGGATAAAACCACAAGTCAAAAAAGGAAAACG
ATCGAGATTAAACCACCAGTCAAAAAATGAAAACTGATAGGGATTAAACCACGAGTCAAAAAATG
AAAACAACCCA
Found at i:5113321 original size:142 final size:141
Alignment explanation
Indices: 5112836--5113462 Score: 407
Period size: 141 Copynumber: 4.4 Consensus size: 141
5112826 TAATGAAACA
* * * * *
5112836 ACCAAAATTAAATCACGAGTCAAAAAATGAAAA-CAACAAGGATTAAA-TCACGAATCGAAAAAA
1 ACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCAA-GATTAAACTCA-GAGTC-AAAAAA
* * *** * * * * * ***
5112899 TGAAAATGACCAGGAATAAATCATGAGTCAGGGAAT-AAAAGCAATGAGAATTAAACCGTAAGTC
63 TGAAAATGATCTGGAATAAATCATGAGTCAAAAAATCAAAA-CCATCAAAACTAAATCACCAGTC
*
5112963 AAAAAAT-AAAAATG
127 AGAAAATGAAAAATG
* * ** * * * *
5112977 ACCAAAATTAAATCATGAGTCAGAAAACAAAAACAACCAAGATTAAACCCCGAGTCAAAAAATGC
1 ACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCAAGATTAAACTCAGAGTCAAAAAATGA
* * * * * * *
5113042 AAATGATCTGGATTAAATCGTGTGTCAAAAAATGAAAACGATCAAGATTAAATCACCAGTCAGAA
66 AAATGATCTGGAATAAATCATGAGTCAAAAAATCAAAACCATCAAAACTAAATCACCAGTCAGAA
**
5113107 AATGAAAAACA
131 AATGAAAAATG
*** * * * * *
5113118 ACCGTCATTAAATCATGAGTCAGAGAAATGAAAATGATCGATATT-AACTCACATGTC-AAAAAT
1 ACCAAAATTAAATCATGAGTCA-AAAAATAAAAATGATCAAGATTAAACTCAGA-GTCAAAAAAT
*
5113181 CGAAAACT-AT-TGAGAATAAATCATGAGTCAGAAAATCAAAACCATCAAAACTAAATCA-CATG
64 -GAAAA-TGATCTG-GAATAAATCATGAGTCAAAAAATCAAAACCATCAAAACTAAATCACCA-G
*
5113243 TCAGAGAATGAAAAATG
125 TCAGAAAATGAAAAATG
* **
5113260 ACCAAAATTAAATCATGAGTTAAAAAATAAAAATGATCAAGATTAAACTGTGAGTCAAAAAATGA
1 ACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCAAGATTAAACTCAGAGTCAAAAAATGA
* * * * * * * * ** * * * *** *
5113325 AAATGACCCGTATTAAA-CTACGAGTTACAAAATAAAAAAGATCGAGATTAAATCGTGAGTCAAA
66 AAATGATCTGGAATAAATC-ATGAGTCAAAAAATCAAAACCATCAAAACTAAATCACCAGTCAGA
5113389 AAATG-AAAATG
130 AAATGAAAAATG
** * * *
5113400 ACTGAGATTAAACCATGAGTCAAAAAATAAAAACGA-CAAGGATTAAAC-CATGAGTCAAAAAAT
1 ACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCAA-GATTAAACTCA-GAGTCAAAAAAT
5113463 AAATACAATC
Statistics
Matches: 376, Mismatches: 92, Indels: 37
0.74 0.18 0.07
Matches are distributed among these distances:
139 3 0.01
140 112 0.30
141 150 0.40
142 110 0.29
143 1 0.00
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (141 bp):
ACCAAAATTAAATCATGAGTCAAAAAATAAAAATGATCAAGATTAAACTCAGAGTCAAAAAATGA
AAATGATCTGGAATAAATCATGAGTCAAAAAATCAAAACCATCAAAACTAAATCACCAGTCAGAA
AATGAAAAATG
Found at i:5113686 original size:36 final size:35
Alignment explanation
Indices: 5113311--5113736 Score: 137
Period size: 35 Copynumber: 12.1 Consensus size: 35
5113301 ATTAAACTGT
* *
5113311 GAGTCA-AAAAATGAAAATGACCCG-TATTAAACTAC
1 GAGTCAGAAAAA-GAAAATGA-CCGAGATTAAACCAC
* * * * * **
5113346 GAGTTACAAAATA-AAAAAGATCGAGATTAAATCGT
1 GAGTCAGAAAA-AGAAAATGACCGAGATTAAACCAC
* *
5113381 GAGTCA-AAAAATGAAAATGACTGAGATTAAACCAT
1 GAGTCAGAAAAA-GAAAATGACCGAGATTAAACCAC
* * * *
5113416 GAGTCA-AAAAATAAAAACGA-CAAGGATTAAACCAT
1 GAGTCAGAAAAA-GAAAATGACCGA-GATTAAACCAC
* ** * * * *
5113451 GAGTCA-AAAAATAAATACAATCGAGTTTAAATCAT
1 GAGTCAGAAAAAGAAA-ATGACCGAGATTAAACCAC
* * ** * * *
5113486 GAGTTA-AGAAATGAAAACAATCGGGATTAAATCAC
1 GAGTCAGA-AAAAGAAAATGACCGAGATTAAACCAC
* * * * * *
5113521 GAGTCA-ATAGATGACAACGACTGAGATTAAATCAC
1 GAGTCAGA-AAAAGAAAATGACCGAGATTAAACCAC
*
5113556 GAGTCAGAAACAA-AAAATGACC-AGGATTAAATCAC
1 GAGTCAGAAA-AAGAAAATGACCGA-GATTAAACCAC
* **
5113591 TAGTCA-AAAAATGAAAATGA-TAAGGATTAAACCAC
1 GAGTCAGAAAAA-GAAAATGACCGA-GATTAAACCAC
* *
5113626 GAGTCAGAAAATGAAAATTACCGAGATTAAACCAC
1 GAGTCAGAAAAAGAAAATGACCGAGATTAAACCAC
* * * *
5113661 TAG-CTAGAAAAAGAAAAATGGCCGAGATCAAA-CATT
1 GAGTC-AGAAAAAG-AAAATGACCGAGATTAAACCA-C
* * ** *
5113697 GAGTCA-AAAAACAAAAACGATTGGGATTAAACCAC
1 GAGTCAGAAAAA-GAAAATGACCGAGATTAAACCAC
5113732 GAGTC
1 GAGTC
5113737 CAAAAATAAA
Statistics
Matches: 303, Mismatches: 65, Indels: 46
0.73 0.16 0.11
Matches are distributed among these distances:
33 3 0.01
34 15 0.05
35 244 0.81
36 39 0.13
37 2 0.01
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (35 bp):
GAGTCAGAAAAAGAAAATGACCGAGATTAAACCAC
Found at i:5114028 original size:35 final size:35
Alignment explanation
Indices: 5113989--5122722 Score: 1293
Period size: 35 Copynumber: 251.3 Consensus size: 35
5113979 AAACGACTAA
*
5113989 GATTAAACCATGAGTCAGAAAATGGAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * *
5114024 GATTAAACCACCAGTCAGAAAA-GAAAAATAAACGG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
*
5114059 GATTAAACCATGAGTCAGAAAATGAAAATGATTGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * *
5114094 AATTAAGCTACGAGTTAGAAAAT---AA-GAAC--
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * *
5114123 GATAAAAAAATGA---A-AAAGA--AAAATTATTGG
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGG
* ***
5114153 GATTAAACCATGAGTCAAAAAATGAATGCGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5114188 GTTTAAATCACGAGTCA-AGAAATGAAAATGATTGT
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * * *
5114223 GATTAAAACACGAGTCAAAAAATGAAGAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAA-AATGATCGG
* * * *
5114259 GATTAAACCGTAAGTCAAAAAAATGAAAATGA-CTGT
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATC-GG
* ** *
5114295 GATTAAACCGTGAGTCAGAAAATGAAAACAATGGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5114330 GATTAAACCATGAGTCAAAAAATGAAAACT-ACTC-A
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGA-TCGG
* * * * *
5114365 AATTAAACCATAAGTCAGAAAATGAAAACGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5114400 GATTAAACCATAAGTCAGAAAATAAAAACGA-CTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
** ** *
5114435 GATTAAA-C-T-ACCCACTAAA--AAAA-GATAGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5114464 GATTAAACCACGAGTCA-AAACATGAAAAATGACCAC
1 GATTAAACCATGAGTCAGAAA-ATG-AAAATGATCGG
* * **
5114500 GATTAGACCACT-AGTCAAAAAATGAAAATGA-CTAT
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATC-GG
* * * * **
5114535 GATTAAACTATGAGTAAAAAAATGAAAATAATCCT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5114570 AATTAAGCCATTAGTCAGAAAATGAAAATGAGAC-A
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGG
** * * * *
5114605 GATTAAACCACAAGTCAAAAAATGAAAA-CAACTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* ** * * * *
5114640 GATCAAACCACCAGTCAAAAAAAGAAAAACGATCAG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* *
5114676 GATTAAACCATGGGTCAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5114711 GATTAAACTATGAGCCAAAAAATGAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * **
5114746 GAATAAACCACGAGTTAGAAAATGAAAACGAGAGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** * * ** * **
5114781 GATTAGACCGTGTCTTAGATAATGAAAACAACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5114816 AATTAAATCATGAGTCATG-AAATGAAAACGA-CAAG
1 GATTAAACCATGAGTCA-GAAAATGAAAATGATC-GG
* * * * * * *
5114851 GATTAAATCACGAATAAAAAAAGTGAAAATGACCAG
1 GATTAAACCATGAGTCAGAAAA-TGAAAATGATCGG
* * * *
5114887 GATTAAATCATGAGCCAGGAAAT-AAAAGCGAT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
* * * * * * **
5114921 GAATTAAATCGTAAGTCAAAAAATAAAAATGACCAA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** ** * *
5114957 AATTAAATCATGAGTCAGAAAACAAAAACAACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * **
5114992 GATTAAACCACAAGTCAAAAAAT-ACAAAAGATCAA
1 GATTAAACCATGAGTCAGAAAATGA-AAATGATCGG
* * * * *
5115027 GATTAAATCGTGAGTCAAAAAATGAAAACGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** ** * *
5115062 GATTAAATCACAAGTCAGAAAATGAAAAACAATTGT
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * * *
5115098 CATTACATCATGAGTCAGAGAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* *
5115134 TATTAAATCACAT--GTCA-AAAATAGAAAACT-A-CTGA
1 GATTAAA-C-CATGAGTCAGAAAAT-GAAAA-TGATC-GG
* * * ** *
5115169 GAATAAATCATGAGTCAGAAAATCAAAACCA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * *
5115204 AACTAAATCACAT--GTCAGAGAATGAAAAATGACCGA
1 GATTAAA-C-CATGAGTCAGAAAATG-AAAATGATCGG
* * * * * *
5115240 AATTAAATCATAAGTTAAAAAATGAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
** * * * *
5115275 GATTAAACTGTGAGTAAAAAAATGAAAATGACCCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5115310 TATTAAACTATGAG-CTAGAAAATAAAAAAGATCAA
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* * * *
5115345 GATTAAACCACGAGTCAGAAAATAAAAACGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5115380 TATTAAACCATGAGTCAAAAAATGAAAACGACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** *
5115415 GATTAAACCACGAGTCAAAAAATGAATACAATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5115450 G-TTCAAATCACGAGTTAAAAAATGAAAAAAATCGG
1 GATT-AAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5115485 GATTAAATCATAAGTCA-AGAAATGACAACGA-CTGA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATC-GG
* * * *
5115520 GATTAAATCACGAGTCA-AAAATAAAAAATGA-CAAG
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATC-GG
* * * **
5115555 GATTAAATCACT-AGTCAAAAAATGAAAACGATAAG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * **
5115590 GATTAAACCACGAGTCAGAAAATGGAAATGACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5115625 GATTAAAGCACT-AG-CTAGAAAATGGAAAATGATCGA
1 GATTAAACCA-TGAGTC-AGAAAAT-GAAAATGATCGG
* * *
5115661 GATTAAA-CATTGAGTCAAAAAATGAAAACGATTGG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* ** * *
5115696 GATTAAACCACGAGTTTGAAAATGCAAACGATC--
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** *
5115729 -A--AAA-AATGA-AAAAAAAATG---AT---CGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** **
5115753 GACTAAACCACGAGTTAGAAAATGAATGTGA-CCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5115787 GTTTGAATCATAAGTCA-AGAAATGAAAATGA-CTGG
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATC-GG
** * * ** * **
5115822 GATTAAAGTATGA-ACTAAAAAATGAAAAACAACCTA
1 GATTAAACCATGAGTC-AGAAAATG-AAAATGATCGG
* ** **
5115858 GATTAAACCACGAGTCAGAAAACAAAAACAAGT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGG
* * * * **
5115893 GATTAAA-TATTGAATCAGAAAAAGAAAATGACCTA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * * * *
5115928 GATTAAAGCATGAGCCAGAAAATGGAAACGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5115963 GATTAAACCACGAGTTAGAAAATGAAAACGATTGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * * **
5115998 GATTAAACTACCCA-TCAAAAAAAGAAAAATGATAAG
1 GATTAAACCA-TGAGTCAGAAAATG-AAAATGATCGG
* * * * * **
5116034 GATTAAACCACGAGTCAAAAAATAAAAAACGACCAT
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGG
* **
5116070 GATTAAACCATGAGTCAAAAAATGAAAATGA-CTAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * **
5116105 GATTAAACCATGAGTCAAAAAATGAAAATAATCTT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5116140 GATTAAGCCATGAGTCAGAAAATGAAAATGAGCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** * *
5116175 GATTAAACTATAAGTCAAAAAATGAAAACAACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * * *
5116210 GATTAAACCACCAGTCAAAAAAAGAAAAACGATCAG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* *
5116246 GATTAAACCAT-AGGTCAGAAAATGAAAATGTTCGA
1 GATTAAACCATGA-GTCAGAAAATGAAAATGATCGG
* *
5116281 GATTAAACTATGAGTCAGAAAATGAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * **
5116316 GAATAAACCACGAGCCAAAAAATGAAAATGAGAGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5116351 GATTAAA-C-TGTGTCTTAGATAATGAAAA-CAACCA
1 GATTAAACCATGAGTC--AGAAAATGAAAATGATCGG
* * * * **
5116385 AATTTAAATCATGAGTCAGAAAATGAAAA-CAACAAA
1 GA-TTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * *
5116421 GATTAAATCACGAATCAAAAAATGAAAATGA-CTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* ** *
5116456 GATTAAATCATGAGTCAGGGAA-CAAAAGTGAT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
* * * * **
5116490 GAATTAAATCGTAAGTCAAAAAATGAAAATGA-CCA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** ** *
5116525 AATTTAAATCATGAGTCA-AAAAACAAAACCAATCGA
1 GA-TTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
** * * *
5116561 GATTAAAATACGAGTCAAAAAATGAAAATGATCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5116596 GATTAAACCGTAAGTCAAAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * ** * **
5116631 GATTAAATCACAAGTTAGAAAATGAAAAACAACTAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * *
5116667 CATTAAATCATGAGTCAGAGAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * *
5116703 TATTAAATCACAT--GTCA-AAAATCAAAA--ACTACTGA
1 GATTAAA-C-CATGAGTCAGAAAATGAAAATGA-T-C-GG
* * * ** *
5116738 GAATAAATCATGAGTCAGAAAATCAAAACCATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5116773 AACTAAATCACAT--GTCAGAGAATGAAAAATGCTCAA
1 GATTAAA-C-CATGAGTCAGAAAATG-AAAATGATCGG
* * * * *
5116809 AATTAAATCACGAGTTAAAAAATGAAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5116844 GATTAAA-C-TGAGTAAAAAAATGAAAATGACCCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5116877 TATTAAACTACT-AGTTAGAAAATAAAAATGATCGA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * * *
5116912 GATTAAA-C-TGCAAGTCAAAAAATGTAAACGATTGA
1 GATTAAACCATG--AGTCAGAAAATGAAAATGATCGG
* * * *
5116947 GATTAAA-CATGAGTCAAAAAATGAAAACGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * **
5116981 GATTAAACCACGAGTCAAAAAATGAATACAATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5117016 GTTTAAATCACGAGTTA-AGAAATGAAAACAATCGG
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * *
5117051 GATT-AACTCATGAGTCA-AGAAATGACAACGA-CTGA
1 GATTAAAC-CATGAGTCAGA-AAATGAAAATGATC-GG
* * * *
5117086 GATTAAATCACGAGTCA-AAAGGA-AAAAATGA-CTAG
1 GATTAAACCATGAGTCAGAAA--ATGAAAATGATC-GG
* * * **
5117121 GATTAAATCACTG-GTCAAAAAATGAAAACGATAAG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * * *
5117156 GATTAAACCACGAGTCAAAAAATGAAAATCACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5117191 GATTAAACCATTAG-CTAGAAAAAGGAAAA-CAACTGG
1 GATTAAACCATGAGTC-AG-AAAATGAAAATGATC-GG
* * **
5117227 GATTAAA-CATTGAATCAAAAAATGAAAATGATTAG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* *
5117262 GAGTAAACCACGAGTCAGAAAATGAAAATGATC--
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *** * *
5117295 -A--AAA-AATGAAAAAAAAAATG---AT---CGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** **
5117320 GACTAAACCATGAGTTATAAAATGAATGTGA-CCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * *
5117354 G-TTCGAATCATGAGTCA-AGAAATGAAAATGA-CTAG
1 GATT-AAACCATGAGTCAGA-AAATGAAAATGATC-GG
* * * * ** * *
5117389 GATTAAAGCACGAGTTAAAAAATGAAAAACAACCTG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * * ** *
5117425 GATTAATCCACGAGTTAGAAAATGAAAACAAGT-AG
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGG
* * * * **
5117460 GATTAAA-CATTGAGTAAAAAAAAAGAAAATGACCTA
1 GATTAAACCA-TGAGT-CAGAAAATGAAAATGATCGG
* * * * **
5117496 GATTAAAGCACGAGCCAGAAAATGAAAACGA-CTAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* *
5117531 GATTAAACCATGAGTCAAAAAATGGAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * *
5117566 GATTAAACCACCAGTCAGAAAA--AAAATGAACAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5117599 GATTAAACCATTAGTCAGAAAATGAAAATGA-CTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * * *
5117634 AATTAAGCTACGAGTTAGAAAATG---A-GAAC--
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** *
5117663 GATAAAAAAATGA---A-AAAGA--AAAATGATTGG
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGG
* ***
5117693 GATTAAACCATGAGTCAAAAAATGAATGCGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5117728 GTTTAAATCACGAGTCA-AGAAATGAAAATGATCGT
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * * * * *
5117763 GATTAAAACACGAGTCAAAAAATGAAGAACGACCGA
1 GATTAAACCATGAGTCAGAAAATGAA-AATGATCGG
* * ** * *
5117799 TATTAAACTACAAGTCAAAAAAATGAAAATGATCGT
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* *
5117835 GATTAAA-C-TGGAGTCAG-AAATGAAAA-CAACGGTG
1 GATTAAACCAT-GAGTCAGAAAATGAAAATGATC-G-G
* * **
5117869 GAATTTAAACCATGAGTCA-AAAATGAAAATAACCCA
1 G-A-TTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5117905 GACT-AAGCA-GAAGTCAGAAAATGAAAACGACCAG
1 GATTAAACCATG-AGTCAGAAAATGAAAATGATCGG
* *
5117939 GATTAAACCA-AAGTCAGAAAAATGAAAATGATTGG
1 GATTAAACCATGAGTCAG-AAAATGAAAATGATCGG
* ** * * **
5117974 GATTAAACTACCCA-TCAAAAAAAGAAAAATGATAAG
1 GATTAAACCA-TGAGTCAGAAAATG-AAAATGATCGG
* * * **
5118010 GATTAAACGACGAAGTC-CAAAATGAAAATGA-CTTT
1 GATTAAACCATG-AGTCAGAAAATGAAAATGATC-GG
* * * * **
5118045 GATTAAAACTATGAGTTAAAAAAATGAAAATAATCCT
1 GATT-AAACCATGAG-TCAGAAAATGAAAATGATCGG
* *
5118082 GATT-AAGCATGAGTCAGAAAATGAATAATGAGTC-A
1 GATTAAACCATGAGTCAGAAAATGAA-AATGA-TCGG
** * *
5118117 GATTAAACCACAAGTCA-CAAATGAAACA--A-CAG
1 GATTAAACCATGAGTCAGAAAATGAAA-ATGATCGG
** * * * *
5118149 GATTAAACCACCAGTCAAAAAAAAGAAAACGATCAG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* * *
5118185 GATTAAAACCATGGGTTAGAAAATGAAAATGATCGA
1 GATT-AAACCATGAGTCAGAAAATGAAAATGATCGG
* * *
5118221 GATTAAACTATGAGTCAGAAAATAAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* **
5118256 GAATAAACCATGAG-CAAGAAAATGAAAATGAGAGG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* * ** * * ** * **
5118291 GATTAGACCGTGTCTTAGATAATGAAAACAACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** * *
5118326 AATTAAATCACGAGTCAGAAAAT-AAAAACAACAAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * * *
5118361 AATTAAATCACGAATCAAAAAAATGAAAATGA-CTAG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATC-GG
* * *
5118397 GATTAAATCACGAGTCAGGGAAAA--AAAGTGAT-GG
1 GATTAAACCATGAGTCA--GAAAATGAAAATGATCGG
* * * * **
5118431 GAATTAAACCGTAAGTCAAAAAATGAAAATGACCAA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** * **
5118467 AATTAAATCATGAGTCAGAAAA-GAAAAACAACCAA
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * * *
5118502 GATTAAACCACGAGTCAAAAAATAAAAATGATCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5118537 TATTAAACCGTGAGTCA-AAAATTGAAAACGATCGA
1 GATTAAACCATGAGTCAGAAAA-TGAAAATGATCGG
* ** * ** * **
5118572 GATTAAATCACAAGTCAAAAAATGAAAAACAACCAT
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * * *
5118608 CATTAAATC-TAGAGTCAGAGAAATGAAAATTATCGA
1 GATTAAACCAT-GAGTCAGA-AAATGAAAATGATCGG
* *
5118644 TATTAAATCCCAT--GTCA-AAAATTGAAAACT-A-CTGA
1 GATTAAA--CCATGAGTCAGAAAA-TGAAAA-TGATC-GG
* * * * * *
5118679 GAATAAATCATGAGTCAGAAAATCAAAATCACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5118714 AACTAAATCACAT--GTCAGAGAATGAAAAATGATCGA
1 GATTAAA-C-CATGAGTCAGAAAATG-AAAATGATCGG
* * * * * * *
5118750 AATTAAATCAGGAGTTAAAAAATGAAAATGACCCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * * * *
5118785 TATTAAACTACGAGTTA-AAAATTAAAAAAGATTGA
1 GATTAAACCATGAGTCAGAAAA-TGAAAATGATCGG
* * * * * *
5118820 GATTAAATCGTGAGTCAAAAAATGAAAACGACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * *
5118855 GATTAAACCATAAGTCAAAAAATGAAAACGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * ** *
5118890 GATTAAACCACAAGTCAAAAAATGAATACAATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5118925 GTTTAAATCATGAGTTA-AGAAATGAAAA-CAGTCGG
1 GATTAAACCATGAGTCAGA-AAATGAAAATGA-TCGG
* * * * * *
5118960 GATTAAATCATGAGTCA-AGAAATGACAAGGGTTGA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * * *
5118995 GATTAAATCATGAGTCA-AAAATAAAAAATGACCAG
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGG
* * * * **
5119030 GATTAAATCACT-AGTCAAAAAATGAAAATCACCCA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * *
5119065 GATTAAACCACT-AG-CTAGAAAAAGTAAAATGACCAG
1 GATTAAACCA-TGAGTC-AGAAAATG-AAAATGATCGG
* * *
5119101 GATTAAA-CATTGAGTCAGAAAACGAAAATGATTGA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * * **
5119136 GATTAAACCACGAGTCAAAAAATAAAAACGATCAAAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC--GG
* * ** * * * ** *
5119173 AATGAAAAAAAAGATGATC-GAGACT--AAACCA-CGA
1 GAT-TAAACCATGA-G-TCAGAAAATGAAAATGATCGG
** ** *** *
5119207 G-TTAAAAAATGAATGTGACCCAGTTTGAATCATGAGTC--
1 GATTAAACCATG-A-GT--CAGAAAATGAA-AATGA-TCGG
* ** * ** * * *
5119245 -AATAAATGGAAATGA--CTGGGACT-AAAGT-A-CGA
1 GATTAAA---CCATGAGTCAGAAAATGAAAATGATCGG
* * *
5119277 G-TTAAA--A--AAT--GAAAA--ACAA-CAT--G
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5119300 GATTAAACCACGAGTCAGAAAACGAAAACAAGT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGG
* * * **
5119335 GACTAAA-CATTGAGTCAGAAAAAGAAAATGACCTA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* ** * **
5119370 GATTAAAGCACAAGCCAGAAAAT-AGAAATGA-CTAA
1 GATTAAACCATGAGTCAGAAAATGA-AAATGATC-GG
*
5119405 GATTAAACCAT-A-TCAGAAAATGGAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * *
5119438 GATTAAACCACT-AGTCAGAAAAAGAAAAATGAACAG
1 GATTAAACCA-TGAGTCAGAAAATG-AAAATGATCGG
* * *
5119474 GATTAAACCATGAGTCAAAAAATTAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * *
5119509 AATTAAACTACGAGTTAGAAAATG---A-GAAC--
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * *
5119538 GATAAAAAAATGA--AAAAAAATG---AT--T-GG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
***
5119565 GATTAAACCATGAGTCAGAAAATGAATGCGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * ** *
5119600 GTTTAAATCACT-CGCCA-AGAAATGAAAACAATCGT
1 GATTAAACCA-TGAGTCAGA-AAATGAAAATGATCGG
** ** * * *
5119635 GATTAAAATACAAGTCAAAAAATGAAAAATGAACGA
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
*** * *
5119671 GATTAAACCGCAAGTCAAAAAAATGAAAACGA-CGAG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCG-G
* * * ** * **
5119707 GATTAAACCATAAGTTAAAAAATGAAAACAACCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * *
5119742 GATTAAACCACAAGTCAAAAAATGAAAACGAT-TG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * * *
5119776 GATTAAACTACCCA-TCAAAAAAAGAAAAATGATAGG
1 GATTAAACCA-TGAGTCAGAAAATG-AAAATGATCGG
* * * * * **
5119812 GATTAAACGACGAG-CAAAAAATGAAAAACGACCAC
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * * **
5119847 GATTAGACCACGAGTCAAAAAATGAAAATGA-CTAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * **
5119882 GATTAAACCATGAGTCAAAAAATGAAAATAATCCT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5119917 GATTAAGCCATGAGTCAGAAAATGAAAATGAGCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * ** * *
5119952 GATTAAACCACAAGTCAAAAAAT-AAAACAACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** * *
5119986 GATTAAACCATCAGTCAAAAAAACAAAAACGATCAG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* *
5120022 GATTAAACCATGGGTCAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5120057 GATTAAACTATGAGTCAGAAAATGAAAATGA-CTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * **
5120092 GAATAAACCACGAGTTAGAAAATAAAAATGAGAGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * ** * ** * **
5120127 GATT-AATCGTGTCTTA-AATAATGAAAACAACCAA
1 GATTAAACCATGAGTCAGAA-AATGAAAATGATCGG
* ** * * * *
5120161 AATTAAGTCACGAGTCAGAAAATGAAAA-CAACAAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * * *
5120196 GATTAAATCACGAATCAAAAAATGACAATGA-CTAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* ** * *
5120231 GATTAAATCATGAGTCAGGGAA-CAAAAGCGAT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
* * * * **
5120265 GAATTAAACCGTAAGTCAAAAAATAAAAATGA-CAAA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * ** ** *
5120301 AATTAAATCATGAGTAAAAAAACAAAAACAATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5120336 GATTAAACGACGAGTCA-AAACATGAAAATGATCAA
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGG
* * ** * *
5120371 GATTAAATCGTGAGTCA-AAAATGAAAACAATAGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** ** * *
5120405 GATTAAATCACAAGTCAGAAAATGAAAAACAACCGT
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * *
5120441 CATTAAATCATGAGTCAGAGAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* *
5120477 TATTAAATCACAT--GTCA-AAAATCGAAAACT-A-CTGA
1 GATTAAA-C-CATGAGTCAGAAAAT-GAAAA-TGATC-GG
* * * * **
5120512 GAATAAATCATGAGTCAGAAAATTAAAATCA-CAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * *
5120546 AAATAAATCACAT--GTTAGAGAAGGAAAAGTGATCGA
1 GATTAAA-C-CATGAGTCAGAAAATGAAAA-TGATCGG
* * * * *
5120582 AATTAAATCACGAG-CTAAAAAATGAAAAGGATCGG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
** ** * * *
5120617 GATTAAACTGTGAAACAAAAAATGAAAATGACCCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * * * * *
5120652 TATTAAAGTACGAGTTAGAAAATAAAAAAGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
*** * * **
5120687 GATTAAACTGCGAGTCAAAAAATGAAAATGACCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * *
5120722 GATTAAACCCTGAGT-AAAAAATG--AATGCAATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATG--ATCGG
* * * * * *
5120756 GATTAAATCACGAGTCA-AAAATAAAAAATAACCAG
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGG
* * * * **
5120791 GATTAAATCACT-AGTCAAAAAATAAAAACGATAAG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* ** * *
5120826 GATTAAACCACGAGTCAGAAAACAAAAATGACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5120861 GATTAAACCACTAACT-AGACACAGGAAAATGATCAA
1 GATTAAACCA-TGAGTCAGA-AAATGAAAATGATCGG
* * *
5120897 GATT-AAGCATTGAGTCAGAAAATGAAAACGATTGG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
*
5120932 GATTAAACCACGAGTCAGAAAATGAAAACT-ATC--
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
** * *
5120965 GA--AAA--ATGA-AAAAAAAATG---AT---CGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * ** * *
5120989 GACTAAACCACGAGTTAGAAAATGAATGTGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5121024 G-TTGAATCATGAGTCA-AGAAATGAAAATGA-CTGG
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATC-GG
** * * * ** * **
5121058 GATTAAAGTACGAGTTAAAAAATGAAAACAACCTA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * **
5121093 GATTAAACCACGAGTCAAAAAACGAAAACAAGT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGG
* * **
5121128 GATTAAA-CATTGAGTCAGAAAAAGAAAATGACCTA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * * **
5121163 GATTAAAGCACAT--GCCAGAAAATGGAAACGA-CTAA
1 GATTAAA-C-CATGAGTCAGAAAATGAAAATGATC-GG
* * *
5121198 GATTAAACCGTGAGTCAAAAAATGGAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * * *
5121233 GATTGAACCACCAGTCAGAAAAAGAAAAATGAACAG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
5121269 GATTAAACCATGAGTCAGAAAATGAAAATGA-CTGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * * *
5121304 AATTAAGCTACGAGTTAGAAAATGAGAACGATAAAAAAATGATTGG
1 GATTAAACCATGAGTCAGAAAAT------G-----AAAATGATCGG
***
5121350 GATTAAACCATGAGTCAGAAAATGAATGCGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * **
5121385 GTTTAAATCACGAGTCA-AGAAATGAAAACGATCAT
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* * * * *
5121420 GATTAAAACTTGAGTCAAAAAATGAATAACGATCGA
1 GATTAAACCATGAGTCAGAAAATGAA-AATGATCGG
* * *
5121456 GATTAAATCGCA--AGTCAAAAAAATGAAAACGATCGT
1 GATTAAA-C-CATGAGTC-AGAAAATGAAAATGATCGG
* * ** * *
5121492 AATTAAACCGTGAGTCAGAAAATGAAAACAACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * *
5121527 GATTAAACCACAACTCAGAAAATGAAAATGATTGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * *
5121562 GATTAAA-C-T-ACCCATAAAA--AAAATGATAGT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * **
5121592 GATTAAACCACAAGTCAAAAAATGAAAATGA-CAT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * **
5121626 GATTAAACCATGAGTCAAAAAATAAAAATAATCTT
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * **
5121661 GATTAAGCCATGAGTCAGAAAATGAAAATGAGCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * ** * *
5121696 GATTAAAGCACAAGTCAAAAAATGAAAACAACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * * * *
5121731 GATTAAACCACCAATCAAAAAAAGAAAAACGATCAG
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * *
5121767 GATTAAACCATGGGTCAGAGAAT-AAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * **
5121801 GATTAAACTATTAGTCAAAAAATTAAAATG-GCTAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * **
5121836 GAATAAACCACGAGTCAGAAAATGAAAATGAGAGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** ** * * * * **
5121871 GATTGGACCATGTCTTAGATAATG-AAATCCACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAAT-GATCGG
* * * ** * * *
5121906 AAATAAATCACAAGTCAGAAAATGAAAA-CAACAAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GG
* * * * *
5121941 GATTGAATCACGAATCAGAAAAATGAAAATGA-CTAG
1 GATTAAACCATGAGTCAG-AAAATGAAAATGATC-GG
* ** * *
5121977 GATTAAATCATGAGTCAGGGAA-CAAAAGAGAT-GG
1 GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGG
* * * * **
5122011 GAATTAAACCGTAAGTCAAAAAATGAAAATGACCAA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * ** * *
5122047 AACTAAATCATGAGTCAAAAAATAAAAACAACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * *
5122082 GATTAAACCACGAGTCA-AAAATTAAAATGATCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* *
5122116 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** ** * *
5122151 GATTAAATCACAAGTCAGAAAATGAAAAACAACCGT
1 GATTAAACCATGAGTCAGAAAATG-AAAATGATCGG
* * **
5122187 CATTAAATCATGAGTCAGAGAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGG
* *
5122223 TATTAAATCACAT--GTCA-AAAATTGAAAACT-A-CTGA
1 GATTAAA-C-CATGAGTCAGAAAA-TGAAAA-TGATC-GG
* * * * ** * **
5122258 GAATAAATCATGAGTCAAAAAAT-CAAACCACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5122292 AACTAAATCACAT--GTCAGAGAATGAAAAATGA-CTGA
1 GATTAAA-C-CATGAGTCAGAAAATG-AAAATGATC-GG
* * * * *
5122328 AATTCAATCATGAG-CTAAAAAATGAAAATGATTGG
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
*** * * *
5122363 GATTAAACTGCGAGTCAAAAAATGAAAATGACCCG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * * * * * **
5122398 TATTAAACTACGAGTTAGAAAATAAAAAAGACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* ** * * * *
5122433 GATTAAATCGCGAGTCAAAAAATGAAAACGGTCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * *
5122468 GATTAAACCATGAGTCAAAAAATGAAAACGACCAG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
** * * * **
5122503 GATTAAACCACAAGCCAAAAAATGAATACAATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
* * * **
5122538 GTTTAAATCATGAGCTAAG-AAATGAAAACAATCGG
1 GATTAAACCATGAG-TCAGAAAATGAAAATGATCGG
* * * * * *
5122573 GATTAAATCATAAGTCTAG-AAATGACAACGATTGA
1 GATTAAACCATGAGTC-AGAAAATGAAAATGATCGG
* * * * * *
5122608 GATTGAATCACGAGTCAG-AAATAAAAAATGACCAG
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGG
* * * * **
5122643 GATTAAATCACT-AGTAAAAAAATGAAAACGATAAG
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGG
* * *
5122678 GATTAAACCACGAGTCAAAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
*
5122713 GATTATACCA
1 GATTAAACCA
5122723 CTAGCTAGAA
Statistics
Matches: 6401, Mismatches: 1756, Indels: 1084
0.69 0.19 0.12
Matches are distributed among these distances:
22 2 0.00
23 2 0.00
24 11 0.00
25 12 0.00
26 11 0.00
27 25 0.00
28 27 0.00
29 80 0.01
30 53 0.01
31 13 0.00
32 69 0.01
33 155 0.02
34 555 0.09
35 3998 0.62
36 1146 0.18
37 166 0.03
38 33 0.01
39 5 0.00
40 5 0.00
41 6 0.00
46 27 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (35 bp):
GATTAAACCATGAGTCAGAAAATGAAAATGATCGG
Found at i:5114496 original size:205 final size:205
Alignment explanation
Indices: 5114271--5114664 Score: 458
Period size: 205 Copynumber: 1.9 Consensus size: 205
5114261 TTAAACCGTA
*** * * *
5114271 AGTCAAAAAAATGAAAATGACTGTGATTAAACC-GTGAGTCAGAAAATGAAAA-CAATGGGGATT
1 AGTCAAAAAAATGAAAATGACCACGATTAAACCACT-AGTCAAAAAATGAAAATCAAT-AGGATT
* * *
5114334 AAACCATGAGTCAAAAAATGAAAACTACT-CAAATTAAACCATAAGTCAGAAAATGAAAACGA-C
64 AAACCATGAGTAAAAAAATGAAAA-TAATCCAAATTAAACCATAAGTCAGAAAATGAAAACGAGA
* * * * *
5114397 CAGGATTAAACCATAAGTCAGAAAATAAAAACGACTAGGATTAAACTACCCACT-AAAAAAAGAT
128 CA-GATTAAACCACAAGTCAAAAAATAAAAACAACTAGGATCAAACCA-CCACTCAAAAAAAGAT
5114461 AGGGATTAAACCACG
191 AGGGATTAAACCACG
* * * * *
5114476 AGTC-AAAACATGAAAAATGACCACGATTAGACCACTAGTCAAAAAATGAAAATGACTATGATTA
1 AGTCAAAAAAATG-AAAATGACCACGATTAAACCACTAGTCAAAAAATGAAAATCAATAGGATTA
* * * * *
5114540 AACTATGAGTAAAAAAATGAAAATAATCCTAATTAAGCCATTAGTCAGAAAATGAAAATGAGACA
65 AACCATGAGTAAAAAAATGAAAATAATCCAAATTAAACCATAAGTCAGAAAATGAAAACGAGACA
* *
5114605 GATTAAACCACAAGTCAAAAAATGAAAACAACTAGGATCAAACCACCAGTCAAAAAAAGA
130 GATTAAACCACAAGTCAAAAAATAAAAACAACTAGGATCAAACCACCACTCAAAAAAAGA
5114665 AAAACGATCA
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
204 14 0.09
205 138 0.88
206 5 0.03
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (205 bp):
AGTCAAAAAAATGAAAATGACCACGATTAAACCACTAGTCAAAAAATGAAAATCAATAGGATTAA
ACCATGAGTAAAAAAATGAAAATAATCCAAATTAAACCATAAGTCAGAAAATGAAAACGAGACAG
ATTAAACCACAAGTCAAAAAATAAAAACAACTAGGATCAAACCACCACTCAAAAAAAGATAGGGA
TTAAACCACG
Found at i:5114768 original size:176 final size:175
Alignment explanation
Indices: 5114152--5118283 Score: 980
Period size: 176 Copynumber: 23.8 Consensus size: 175
5114142 AAAATTATTG
*** * * *
5114152 GGATTAAACCATGAGTCAAAAAATGAATGCGATCGGGTTTAAA-TCACGAGTCA-AGAAATGAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACT-ATGAGTCAGA-AAATGAAA
* * * * * * *
5114215 ATGATTGTGATTAAAACACGAGTCAAAAAATGAAGAATGATCGAGATTAAACCGTAAGTCAAAAA
64 ATGACTGAGATTAAACCATGAGTCAGAAAATGAA-AATGAAC-AGATTAAACCATAAGTC-AAAA
** ** * * * **
5114280 AATGAAAATGACT-GTGATTAAACCGTGAGTCAGAAAATG-AAAACAATGG
126 AATGAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * *
5114329 GGATTAAACCATGAGTCAAAAAATGAAAACT-ACTC-AAATTAAACCATAAGTCAGAAAATGAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAA-TGA-TCGAGATTAAACTATGAGTCAGAAAATGAAA
* * * * * ** **
5114392 ACGAC-CAGGATTAAACCATAAGTCAGAAAATAAAAACG-ACTAGGATTAAA-C-T-ACCCACTA
64 ATGACTGA-GATTAAACCATGAGTCAGAAAATGAAAATGAAC-A-GATTAAACCATAAGTCAAAA
* * * * *
5114452 AA--AAAA-GA-TAGGGATTAAACCACGAGTCAAAACATGAAAAATGACCA
126 AATGAAAACAACTA-GGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * *
5114499 CGATTAGACCACT-AGTCAAAAAATGAAAATGA-CTATGATTAAACTATGAGTAAAAAAATGAAA
1 GGATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA-GATTAAACTATGAGTCAGAAAATGAAA
* * * *
5114562 ATAATCCT-A-ATTAAGCCATTAGTCAGAAAATGAAAATGAGACAGATTAAACCACAAGTCAAAA
64 ATGA--CTGAGATTAAACCATGAGTCAGAAAATGAAAATGA-ACAGATTAAACCATAAGTCAAAA
* *
5114625 AATGAAAACAACTAGGATCAAACCACCAGTCAAAAAAAGAAAAACGATCA
126 AATGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * *
5114675 GGATTAAACCATGGGTCAGAAAATGAAAATGATCGAGATTAAACTATGAGCCAAAAAATGAAAAT
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAAT
* * * * ** * * * *
5114740 GACTGAGAATAAACCACGAGTTAGAAAATGAAAACGAGAGGGATTAGACCGT--GTCTTAGATAA
66 GACTGAGATTAAACCATGAGTCAGAAAATGAAAATGA-ACAGATTAAACCATAAGTC--AAAAAA
* ** * * ** *
5114803 TGAAAACAACCAAAATTAAATCATGAGTCATGAAATG-AAAACGA-CAA
128 TGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATC-A
* * * * * * *
5114850 GGATTAAATCACGAATAAAAAAAGTGAAAATGA-CCAGGATTAAA-TCATGAGCCAGGAAAT-AA
1 GGATTAAACCATGAGTCAAAAAA-TGAAAATGATCGA-GATTAAACT-ATGAGTCAGAAAATGAA
* * * * * * * * * * * *
5114912 AAGCGA-TGGGAATTAAATCGTAAGTCAAAAAATAAAAATGACCAAAATTAAATCATGAGTCAGA
63 AA-TGACTGAG-ATTAAACCATGAGTCAGAAAATGAAAATGAAC-AGATTAAACCATAAGTCAAA
** * * *
5114976 AAACAAAAACAAC-CGAGATTAAACCACAAGTCAAAAAATA-CAAAA-GATCA
125 AAATGAAAACAACTAG-GATTAAACCACGAGTCAAAAAA-AGAAAAACGATCA
* * * * **
5115026 AGATTAAATCGTGAGTCAAAAAATGAAAACGATCGAGATTAAA-TCACAAGTCAGAAAATGAAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACT-ATGAGTCAGAAAATG-AAA
** * ** * * * * * * *
5115090 ACAATTGTCATTACATCATGAGTCAGAGAAATGAAAATGATCGATATTAAATCACATGTC-AAAA
64 ATGACTGAGATTAAACCATGAGTCAGA-AAATGAAAATGAAC-AGATTAAACCATAAGTCAAAAA
* * * * * ** * *
5115154 ATAGAAAACTACT-GAGAATAAATCATGAGTC-AGAAAATCAAAACCA-CT
127 AT-GAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * * * * * *
5115202 GAAACTAAATCACAT--GTCAGAGAATGAAAAATGACCGAAATTAAA-TCATAAGTTAAAAAATG
1 G-GATTAAA-C-CATGAGTCAAAAAATG-AAAATGATCGAGATTAAACT-ATGAGTCAGAAAATG
** * * * * * * *
5115264 AAAATGACTGAGATTAAACTGTGAGTAAAAAAATGAAAATGACCCGTATTAAACTATGAG-CTAG
61 AAAATGACTGAGATTAAACCATGAGTCAGAAAATGAAAATGAACAG-ATTAAACCATAAGTC-AA
* * * *
5115328 AAAAT-AAAA-AAGATCAAGATTAAACCACGAGTC-AGAAAATAAAAACGATC-
124 AAAATGAAAACAA-CT-AGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * * * * *
5115378 GATATTAAACCATGAGTCAAAAAATGAAAACGACCAAGATTAAACCACGAGTCAAAAAATGAATA
1 G-GATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAA
* * * * * * * * * *
5115443 -CAATCGAG-TTCAAATCACGAGTTAAAAAATGAAAA-AAATCGGGATTAAATCATAAGTCAAGA
65 TGACT-GAGATT-AAACCATGAGTCAGAAAATGAAAATGAA-C-AGATTAAACCATAAGTCAAAA
* * * * *
5115505 AATGACAACGACT-GAGATTAAATCACGAGTCAAAAATA-AAAAATGA-CAA
126 AATGAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATC-A
* * * * * *
5115554 GGATTAAATCACT-AGTCAAAAAATGAAAACGAT-AAGGATTAAACCACGAGTCAGAAAATGGAA
1 GGATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA-GATTAAACTATGAGTCAGAAAATGAAA
** * * *
5115617 ATGACCAAGATTAAAGCACT-AG-CTAGAAAATGGAAAATGATCGAGATTAAA-CATTGAGTCAA
64 ATGACTGAGATTAAACCA-TGAGTC-AGAAAAT-GAAAATGAAC-AGATTAAACCA-TAAGTCAA
* * * *** * *
5115679 AAAATGAAAACGATTGGGATTAAACCACGAGTTTGAAAATG-CAAACGATCA
124 AAAATGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * * **
5115730 --A--AAA--AT--G---AAAAA--AAAATGATCGGGACTAAACCACGAGTTAGAAAATGAATGT
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAAT
* * * * * * ** *
5115782 GAC-CAGTTTGAATCATAAGTCA-AGAAATGAAAATG-ACTGGGATTAAAGTATGAACT-AAAAA
66 GACTGAGATTAAACCATGAGTCAGA-AAATGAAAATGAAC--AGATTAAACCAT-AAGTCAAAAA
* * * *
5115843 ATGAAAAACAACCTA-GATTAAACCACGAGTC-AGAAAACAAAAACAAGT-G
127 ATG-AAAACAA-CTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGA-TCA
* * * * * *
5115892 GGATTAAA-TATTGAATCAGAAAAA-GAAAATGACCTAGATTAAAGC-ATGAGCCAGAAAATGGA
1 GGATTAAACCA-TGAGTCA-AAAAATGAAAATGATCGAGATTAAA-CTATGAGTCAGAAAATGAA
* * * * * *** * **
5115954 AACGAC-CAGGATTAAACCACGAGTTAGAAAATGAAAACGATTGGGATTAAACTACCCA-TCAAA
63 AATGACTGA-GATTAAACCATGAGTCAGAAAATGAAAATGA-ACAGATTAAACCA-TAAGTCAAA
* *
5116017 AAAAGAAAA-ATGA-TAAGGATTAAACCACGAGTCAAAAAATA-AAAAACGACCA
125 AAATGAAAACA--ACT-AGGATTAAACCACGAGTCAAAAAA-AGAAAAACGATCA
* * * *
5116069 TGATTAAACCATGAGTCAAAAAATGAAAATGA-CTATGATTAAACCATGAGTCAAAAAATGAAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGA-GATTAAACTATGAGTCAGAAAATGAAAA
* * * * *
5116133 TAATCT-TGATTAAGCCATGAGTCAGAAAATGAAAATGAGCCAGATTAAACTATAAGTCAAAAAA
65 TGA-CTGAGATTAAACCATGAGTCAGAAAATGAAAATGA-ACAGATTAAACCATAAGTCAAAAAA
* *
5116197 TGAAAACAACCAGGATTAAACCACCAGTCAAAAAAAGAAAAACGATCA
128 TGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* *
5116245 GGATTAAACCAT-AGGTCAGAAAATGAAAATGTTCGAGATTAAACTATGAGTCAGAAAATGAAAA
1 GGATTAAACCATGA-GTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAA
* * * * ** ** * *
5116309 TGACTGAGAATAAACCACGAGCCAAAAAATGAAAATGAGAGGGATTAAA-C-TGTGTCTTAGATA
65 TGACTGAGATTAAACCATGAGTCAGAAAATGAAAATGA-ACAGATTAAACCATAAGTC--AAAAA
* * * * * * *
5116372 ATGAAAACAACCA-AATTTAAATCATGAGTCAGAAAATG-AAAAC-AACAA
127 ATGAAAACAACTAGGA-TTAAACCACGAGTCAAAAAAAGAAAAACGATC-A
* * * * * ** *
5116420 AGATTAAATCACGAATCAAAAAATGAAAATGA-CTAGGATTAAA-TCATGAGTCAGGGAA-CAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGA-GATTAAACT-ATGAGTCAGAAAATGAAA
* * * * * * * * *
5116482 AGTGA-TGGGAATTAAATCGTAAGTCAAAAAATGAAAATGACCAAATTTAAATCATGAGTCAAAA
64 A-TGACTGAG-ATTAAACCATGAGTCAGAAAATGAAAATGAACAGA-TTAAACCATAAGTCAAAA
* * ** * *
5116546 AA-CAAAACCAA-TCGAGATTAAAATACGAGTCAAAAAATG-AAAATGATCA
126 AATGAAAA-CAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * ** *
5116595 GGATTAAACCGTAAGTCAAAAAATGAAAATGATCGAGATTAAA-TCACAAGTTAGAAAATGAAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACT-ATGAGTCAGAAAATG-AAA
** * * * * * * *
5116659 ACAACT-ATCATTAAATCATGAGTCAGAGAAATGAAAATGATCGATATTAAATCACATGTC-AAA
64 ATGACTGA-GATTAAACCATGAGTCAGA-AAATGAAAATGAAC-AGATTAAACCATAAGTCAAAA
* * * * * * ** *
5116722 AATCAAAAACTACT-GAGAATAAATCATGAGTC-AGAAAATCAAAACCATC-
126 AAT-GAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * * * * * * *
5116771 GAAACTAAATCACAT--GTCAGAGAATGAAAAATGCTCAAAATTAAA-TCACGAGTTAAAAAATG
1 G-GATTAAA-C-CATGAGTCAAAAAATG-AAAATGATCGAGATTAAACT-ATGAGTCAGAAAATG
* * * * * * *
5116833 AAAATGA-TCGGGATTAAA-C-TGAGTAAAAAAATGAAAATGACCCGTATTAAACTACT-AGTTA
61 AAAATGACT-GAGATTAAACCATGAGTCAGAAAATGAAAATGAACAG-ATTAAACCA-TAAGTCA
* * ** * ** * * * *
5116894 GAAAATAAAAATGA-TCGAGATTAAACTGCAAGTCAAAAAATG-TAAACGAT-T
123 AAAAATGAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * * *
5116945 GAGATTAAA-CATGAGTCAAAAAATGAAAACGA-CCAGGATTAAACCACGAGTCAAAAAATGAAT
1 G-GATTAAACCATGAGTCAAAAAATGAAAATGATCGA-GATTAAACTATGAGTCAGAAAATGAAA
* * * * * * * * * *
5117008 A-CAATCGGGTTTAAATCACGAGTTA-AGAAATGAAAA-CAATCGGGATT-AACTCATGAGTCAA
64 ATGACT-GAGATTAAACCATGAGTCAGA-AAATGAAAATGAA-C-AGATTAAAC-CATAAGTCAA
* * * * ** *
5117069 GAAATGACAACGACT-GAGATTAAATCACGAGTCAAAAGGA-AAAAATGA-CTA
124 AAAATGAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATC-A
* * * * * *
5117120 GGATTAAATCACTG-GTCAAAAAATGAAAACGAT-AAGGATTAAACCACGAGTCAAAAAATGAAA
1 GGATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA-GATTAAACTATGAGTCAGAAAATGAAA
* * * * * *
5117183 ATCACCGAGATTAAACCATTAG-CTAGAAAAAGGAAAA-CAACTGGGATTAAA-CATTGAA-TCA
64 ATGACTGAGATTAAACCATGAGTC-AG-AAAATGAAAATGAAC--AGATTAAACCA-T-AAGTCA
** * * * * *
5117244 AAAAATGAAAATGATTAGGAGTAAACCACGAGTCAGAAAATG-AAAATGATCA
123 AAAAATGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * * * **
5117296 --A--AAA--AT--G--AAAAAA--AAAATGATCGAGACTAAACCATGAGTTATAAAATGAATGT
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAAT
* * * * ** *
5117349 GAC-CAG-TTCGAATCATGAGTCA-AGAAATGAAAATG-ACTAGGATTAAAGCACGAGTTAAAAA
66 GACTGAGATT-AAACCATGAGTCAGA-AAATGAAAATGAAC-A-GATTAAACCATAAGTCAAAAA
* * * * *
5117410 ATGAAAAACAACCT-GGATTAATCCACGAGTTAGAAAATG-AAAACAAGT-A
127 ATG-AAAACAA-CTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGA-TCA
* * * * * *
5117459 GGATTAAA-CATTGAGTAAAAAAAAAGAAAATGACCTAGATTAAAGC-ACGAGCCAGAAAATGAA
1 GGATTAAACCA-TGAGT-CAAAAAATGAAAATGATCGAGATTAAA-CTATGAGTCAGAAAATGAA
* * * * * * **
5117522 AACGACTAAGATTAAACCATGAGTCAAAAAATGGAAATGATCGGGATTAAACCACCAGTCAGAAA
63 AATGACTGAGATTAAACCATGAGTCAGAAAATGAAAATGAAC-AGATTAAACCATAAGTCA-AAA
** ** * * *
5117587 AA--AAATGAAC-AGGATTAAACCATTAGTCAGAAAATG-AAAATGA-CTA
126 AATGAAAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATC-A
* * * * * * * * *
5117633 GAATTAAGCTACGAGTTAGAAAATGAGAACGAT--A-A--AAA--A--A-T--GAAAAAGAAAAA
1 GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATG-AAAA
* * * *** * * * * ** *
5117686 TGATTGGGATTAAACCATGAGTCAAAAAATGAATGCGATCGGGTTTAAATCACGAGTCAAGAAAT
65 TGACTGAGATTAAACCATGAGTCAGAAAATGAAAATGAAC-AGATTAAACCATAAGTCAAAAAAT
** * * * * *
5117751 GAAAATGA-TCGTGATTAAAACACGAGTCAAAAAATGAAGAACGA-CC
129 GAAAACAACTAG-GATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
* * ** * *
5117797 GATATTAAACTACAAGTCAAAAAAATGAAAATGATCGTGATTAAACT-GGAGTCAG-AAATGAAA
1 G-GATTAAACCATGAGTC-AAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAA
** * * *
5117860 ACAACGGTG-GAATTTAAACCATGAGTCA-AAAATGAAAAT-AACCCAGACT-AAGCAGAAGTCA
64 ATGAC--TGAG-A-TTAAACCATGAGTCAGAAAATGAAAATGAA--CAGATTAAACCATAAGTCA
* * * * * * **
5117921 GAAAATGAAAACGACCAGGATTAAACCA-AAGTCAGAAAAATG-AAAATGATTG
123 AAAAATGAAAACAACTAGGATTAAACCACGAGTCA-AAAAAAGAAAAACGATCA
* ** * * * * *
5117973 GGATTAAACTACCCA-TCAAAAAAAGAAAAATGAT-AAGGATTAAACGACGAAGTC-CAAAATGA
1 GGATTAAACCA-TGAGTCAAAAAATG-AAAATGATCGA-GATTAAACTATG-AGTCAGAAAATGA
** * * * * * *
5118035 AAATGACTTTGATTAAAACTATGAGTTAAAAAAATGAAAAT-AATCCTGATT-AAGCATGAGTCA
62 AAATGACTGAGATT-AAACCATGAG-TCAGAAAATGAAAATGAA--CAGATTAAACCATAAGTCA
* ** * * * * *
5118098 GAAAATGAATAATGAGTCA-GATTAAACCACAAGTC-ACAAATG--AAAC-AACA
123 AAAAATGAA-AACAACT-AGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
** * * * * *
5118148 GGATTAAACCACCAGTCAAAAAAAAGAAAACGATC-AGGATTAAAACCATGGGTTAGAAAATGAA
1 GGATTAAACCATGAGTC-AAAAAATGAAAATGATCGA-GATT-AAACTATGAGTCAGAAAATGAA
* * * *
5118212 AATGA-TCGAGATTAAACTATGAGTCAGAAAATAAAAATG-ACTGAGAATAAACCATGAG-CAAG
63 AATGACT-GAGATTAAACCATGAGTCAGAAAATGAAAATGAAC--AGATTAAACCATAAGTCAA-
5118274 AAAATGAAAA
124 AAAATGAAAA
5118284 TGAGAGGGAT
Statistics
Matches: 2949, Mismatches: 709, Indels: 597
0.69 0.17 0.14
Matches are distributed among these distances:
160 1 0.00
161 41 0.01
162 124 0.04
163 87 0.03
164 58 0.02
165 25 0.01
166 23 0.01
167 4 0.00
168 9 0.00
169 28 0.01
170 95 0.03
171 14 0.00
172 53 0.02
173 36 0.01
174 241 0.08
175 632 0.21
176 868 0.29
177 484 0.16
178 116 0.04
179 10 0.00
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (175 bp):
GGATTAAACCATGAGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATGAAAAT
GACTGAGATTAAACCATGAGTCAGAAAATGAAAATGAACAGATTAAACCATAAGTCAAAAAATGA
AAACAACTAGGATTAAACCACGAGTCAAAAAAAGAAAAACGATCA
Found at i:5114899 original size:71 final size:69
Alignment explanation
Indices: 5114811--5114977 Score: 180
Period size: 71 Copynumber: 2.4 Consensus size: 69
5114801 AATGAAAACA
5114811 ACCAAAATTAAATCATGAGTCATGAAATGAAAA-CGACAAGG-ATTAAATCACG-AA-TAAAAAA
1 ACCAAAATTAAATCATGAGTCA-GAAAT-AAAAGCGA-AAGGAATTAAAT--CGTAAGTAAAAAA
*
5114872 AGTGAAAATG
61 A-TAAAAATG
** * ** *
5114882 ACCAGGATTAAATCATGAGCCAGGAAATAAAAGCGATGGGAATTAAATCGTAAGTCAAAAAATAA
1 ACCAAAATTAAATCATGAGTCA-GAAATAAAAGCGAAAGGAATTAAATCGTAAGTAAAAAAATAA
5114947 AAATG
65 AAATG
5114952 ACCAAAATTAAATCATGAGTCAGAAA
1 ACCAAAATTAAATCATGAGTCAGAAA
5114978 ACAAAAACAA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
69 6 0.07
70 34 0.42
71 41 0.51
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.19
Consensus pattern (69 bp):
ACCAAAATTAAATCATGAGTCAGAAATAAAAGCGAAAGGAATTAAATCGTAAGTAAAAAAATAAA
AATG
Found at i:5115250 original size:142 final size:141
Alignment explanation
Indices: 5114933--5115437 Score: 346
Period size: 142 Copynumber: 3.6 Consensus size: 141
5114923 ATTAAATCGT
* * ** **
5114933 AAGTCAAAAAAT-AAAAATGACCAAAATTAAATCATGAGTCAGAAAACAAAAACAACCGAGATTA
1 AAGTCAGAAAATGAAAAATGACCGAAATTAAATCATGAGTCAGAAAATGAAAATGACCGAGATTA
* * * *
5114997 AACCACAAGTCAAAAAATACAAAAGATCAAGATTAAATCGTGAGTCAAAAAATGAAAACGATCGA
66 AACCACAAGTCAAAAAATACAAAAGATCAAGAATAAATCATGAGTCAAAAAATCAAAACCATCGA
* *
5115062 GATTAAATCAC
131 AACTAAATCAC
** ** ** * * *
5115073 AAGTCAGAAAATGAAAAACAATTGTCATTACATCATGAGTCAGAGAAATGAAAATGATCGATATT
1 AAGTCAGAAAATGAAAAATGACCGAAATTAAATCATGAGTCAGA-AAATGAAAATGACCGAGATT
* * * * * *
5115138 AAATCACATGTC-AAAAATAGAAAA-CTACTGAGAATAAATCATGAGTCAGAAAATCAAAACCA-
65 AAACCACAAGTCAAAAAATACAAAAGAT-C-AAGAATAAATCATGAGTCAAAAAATCAAAACCAT
5115200 CTGAAACTAAATCAC
128 C-GAAACTAAATCAC
* * * * * *
5115215 ATGTCAGAGAATGAAAAATGACCGAAATTAAATCATAAGTTAAAAAATGAAAATGACTGAGATTA
1 AAGTCAGAAAATGAAAAATGACCGAAATTAAATCATGAGTCAGAAAATGAAAATGACCGAGATTA
**** * * ** * * * **
5115280 AACTGTGAGTAAAAAAATGA-AAATGA-CCCGTATTAAA-CTATGAG-CTAGAAAATAAAAAAGA
66 AACCACAAGTCAAAAAAT-ACAAAAGATCAAG-AATAAATC-ATGAGTC-AAAAAATCAAAACCA
* *
5115341 TC-AAGATTAAACCAC
127 TCGAA-ACTAAATCAC
* * * * * * * *
5115356 GAGTCAGAAAAT-AAAAACGATCGATATTAAACCATGAGTCAAAAAATGAAAACGACCAAGATTA
1 AAGTCAGAAAATGAAAAATGACCGAAATTAAATCATGAGTCAGAAAATGAAAATGACCGAGATTA
*
5115420 AACCACGAGTCAAAAAAT
66 AACCACAAGTCAAAAAAT
5115438 GAATACAATC
Statistics
Matches: 277, Mismatches: 75, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
140 74 0.27
141 98 0.35
142 104 0.38
143 1 0.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (141 bp):
AAGTCAGAAAATGAAAAATGACCGAAATTAAATCATGAGTCAGAAAATGAAAATGACCGAGATTA
AACCACAAGTCAAAAAATACAAAAGATCAAGAATAAATCATGAGTCAAAAAATCAAAACCATCGA
AACTAAATCAC
Found at i:5119172 original size:17 final size:19
Alignment explanation
Indices: 5119145--5119181 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
5119135 AGATTAAACC
5119145 ACGAGTCAAAAAAT-AAAA
1 ACGAGTCAAAAAATGAAAA
5119163 ACGA-TCAAAAAATGAAAA
1 ACGAGTCAAAAAATGAAAA
5119181 A
1 A
5119182 AAAGATGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (19 bp):
ACGAGTCAAAAAATGAAAA
Found at i:5120430 original size:69 final size:69
Alignment explanation
Indices: 5120277--5120432 Score: 174
Period size: 69 Copynumber: 2.2 Consensus size: 69
5120267 ATTAAACCGT
* *
5120277 AAGTCAAAAAATAAAAATGACAAAAATTAAATCATGAGTAAAAAAACAAAAACAATCGAGATTAA
1 AAGTC-AAAAATGAAAATGACAAAAATTAAATCATGAGTAAAAAAACAAAAACAATAGAGATTAA
5120342 ACGAC
65 ACGAC
* * * * **
5120347 GAGTCAAAACATGAAAATGATC-AAGATTAAATCGTGAGT-CAAAAATGAAAACAATAGAGATTA
1 AAGTCAAAA-ATGAAAATGA-CAAAAATTAAATCATGAGTAAAAAAACAAAAACAATAGAGATTA
5120410 AATC-AC
64 AA-CGAC
5120416 AAGTCAGAAAATGAAAA
1 AAGTCA-AAAATGAAAA
5120433 ACAACCGTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
69 40 0.55
70 32 0.44
71 1 0.01
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.17
Consensus pattern (69 bp):
AAGTCAAAAATGAAAATGACAAAAATTAAATCATGAGTAAAAAAACAAAAACAATAGAGATTAAA
CGAC
Found at i:5120784 original size:69 final size:67
Alignment explanation
Indices: 5120670--5120869 Score: 174
Period size: 69 Copynumber: 2.9 Consensus size: 67
5120660 TACGAGTTAG
* *
5120670 AAAATAAAAA-AGATCGAGATTAAACTGCGAGTCAAAAAATGAAAATGACCCAGATTAAACCCTG
1 AAAATAAAAACA-ATCGAGATTAAAC-ACGAGTCAAAAAA-AAAAATGACCCAGATTAAACCCT-
5120734 AGT-AA
62 AGTCAA
* ** * *
5120739 AAAATGAATGCAATCGAGATTAAATCACGAGTCAAAAATAAAAAAT-AACCAGGATTAAATCACT
1 AAAATAAAAACAATCGAGATTAAA-CACGAGTCAAAAA-AAAAAATGACCCA-GATTAAA-CCCT
5120803 AGTCAA
62 AGTCAA
* * * *
5120809 AAAATAAAAACGAT-AAGGATTAAACCACGAGTCAGAAAACAAAAATGACCGAGATTAAACC
1 AAAATAAAAACAATCGA-GATTAAA-CACGAGTCA-AAAAAAAAAATGACCCAGATTAAACC
5120870 ACTAACTAGA
Statistics
Matches: 105, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
68 4 0.04
69 47 0.45
70 47 0.45
71 7 0.07
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.17
Consensus pattern (67 bp):
AAAATAAAAACAATCGAGATTAAACACGAGTCAAAAAAAAAAATGACCCAGATTAAACCCTAGTC
AA
Found at i:5121398 original size:81 final size:81
Alignment explanation
Indices: 5121268--5121416 Score: 178
Period size: 81 Copynumber: 1.8 Consensus size: 81
5121258 AAAATGAACA
* * *
5121268 GGATTAAACCATGAGTCAGAAAATGAAAATGACTGGAATTAAGCTACGAGT-TAGAAAATGAGAA
1 GGATTAAACCATGAGTCAGAAAATGAAAACGACTGGAATTAAGCTACGAGTCAAG-AAATGAAAA
5121332 CGATAAAAAAATGATTG
65 CGATAAAAAAATGATTG
** ** *
5121349 GGATTAAACCATGAGTCAGAAAATGAATGCGA-TCGGGTTTAA-ATCACGAGTCAAGAAATGAAA
1 GGATTAAACCATGAGTCAGAAAATGAAAACGACT-GGAATTAAGCT-ACGAGTCAAGAAATGAAA
5121412 ACGAT
64 ACGAT
5121417 CATGATTAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
80 2 0.04
81 53 0.93
82 2 0.04
ACGTcount: A:0.46, C:0.11, G:0.23, T:0.21
Consensus pattern (81 bp):
GGATTAAACCATGAGTCAGAAAATGAAAACGACTGGAATTAAGCTACGAGTCAAGAAATGAAAAC
GATAAAAAAATGATTG
Found at i:5121700 original size:134 final size:136
Alignment explanation
Indices: 5121456--5121702 Score: 300
Period size: 134 Copynumber: 1.8 Consensus size: 136
5121446 TAACGATCGA
* * * * * *
5121456 GATTAAATCGCAAGTCAAAAAAATGAAAACGATCGTAATTAAACCGTGAGTCAGAAAATGAAAAC
1 GATTAAACCACAAGTCAAAAAAATGAAAACGATCATAATTAAACCATGAGTCAAAAAATAAAAAC
****
5121521 AACCAGGATTAAACCACAACTCAGAAAATGAAAATGATTGGGATTAAACTACCCATAAAAAAAAT
66 AACCAGGATTAAACCACAACTCAGAAAATGAAAATGAGCCAGATTAAACTACCCATAAAAAAAAT
5121586 GATAGT
131 GATAGT
* * *
5121592 GATTAAACCACAAGTC-AAAAAATGAAAATGA-CATGATTAAACCATGAGTCAAAAAATAAAAAT
1 GATTAAACCACAAGTCAAAAAAATGAAAACGATCATAATTAAACCATGAGTCAAAAAATAAAAAC
* ** * ** *
5121655 AATCTTGATTAAGCCATGAGTCAGAAAATGAAAATGAGCCAGATTAAA
66 AACCAGGATTAAACCACAACTCAGAAAATGAAAATGAGCCAGATTAAA
5121703 GCACAAGTCA
Statistics
Matches: 91, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
134 63 0.69
135 14 0.15
136 14 0.15
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (136 bp):
GATTAAACCACAAGTCAAAAAAATGAAAACGATCATAATTAAACCATGAGTCAAAAAATAAAAAC
AACCAGGATTAAACCACAACTCAGAAAATGAAAATGAGCCAGATTAAACTACCCATAAAAAAAAT
GATAGT
Found at i:5123075 original size:35 final size:35
Alignment explanation
Indices: 5122967--5123417 Score: 118
Period size: 35 Copynumber: 13.2 Consensus size: 35
5122957 AAACCAGTGC
* *
5122967 GATTAAA-CATTGAGTCAGAAAA-GAAAATGACCTA-
1 GATTAAACCA-TGAGTAAAAAAATGAAAATGACC-AG
* ** * * * *
5123001 GATTAAAGCACT-AGCCAAAAAATGGAAATGTCTAA
1 GATTAAACCA-TGAGTAAAAAAATGAAAATGACCAG
* *
5123036 GATTAAACCATGAGTAAAAAAATGGAAATGACCGG
1 GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
** ** *
5123071 GATTAAACCACCAGTTAGGAAAA-GAAAAATGAACAG
1 GATTAAACCATGAG-TAAAAAAATG-AAAATGACCAG
* *
5123107 GATTAAACCATGAGTCAAAAAATGAAAATGA-CTG
1 GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
* * * * * *
5123141 GAATTAAGCTATGAGTTAGAAAATGAGAATGA-TA-
1 G-ATTAAACCATGAGTAAAAAAATGAAAATGACCAG
* ** *
5123175 -A--AAA-AATGAAAAAGAAAAATG--ATTG---A-
1 GATTAAACCATGAGTAA-AAAAATGAAAATGACCAG
* * * *
5123201 GATTAAACCATTAGTCAAAAAATGAATATGATC--
1 GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
* * * * *
5123234 GACTTTAAATCACGAGTCAAGAAATGAAAATGATC-G
1 GA--TTAAACCATGAGTAAAAAAATGAAAATGACCAG
* * ** *
5123270 TGATTAAAACATGAGTCAAAAAATGAAGAACCACCAA
1 -GATTAAACCATGAGTAAAAAAATGAA-AATGACCAG
* * * *
5123307 GATTAAATCGTAAGTCAAAAAAATGAAAATGACCAC
1 GATTAAACCATGAGT-AAAAAAATGAAAATGACCAG
* ** * * ***
5123343 GATTAAACCGTGAGT-CGAAAATAAAAACGATGGG
1 GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
* * * *
5123377 GATTAAACCATGAGTCAAAAAATGGAAATGACTAT
1 GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
5123412 GATTAA
1 GATTAA
5123418 NNNNNNNNNN
Statistics
Matches: 305, Mismatches: 86, Indels: 51
0.69 0.19 0.12
Matches are distributed among these distances:
26 1 0.00
27 1 0.00
28 3 0.01
29 15 0.05
30 12 0.04
31 2 0.01
32 1 0.00
33 2 0.01
34 45 0.15
35 149 0.49
36 62 0.20
37 12 0.04
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.20
Consensus pattern (35 bp):
GATTAAACCATGAGTAAAAAAATGAAAATGACCAG
Found at i:5123134 original size:36 final size:36
Alignment explanation
Indices: 5123036--5123134 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
5123026 AAATGTCTAA
* * *
5123036 GATTAAACCATGAGTAAAAAAATG-GAAATGACCGG
1 GATTAAACCATGAGTAAAAAAATGAAAAATGAACAG
** **
5123071 GATTAAACCACCAGTTAGGAAAA-GAAAAATGAACAG
1 GATTAAACCATGAG-TAAAAAAATGAAAAATGAACAG
*
5123107 GATTAAACCATGAGTCAAAAAATGAAAA
1 GATTAAACCATGAGTAAAAAAATGAAAA
5123135 TGACTGGAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
35 18 0.37
36 31 0.63
ACGTcount: A:0.53, C:0.12, G:0.19, T:0.16
Consensus pattern (36 bp):
GATTAAACCATGAGTAAAAAAATGAAAAATGAACAG
Found at i:5123347 original size:36 final size:35
Alignment explanation
Indices: 5123247--5123417 Score: 110
Period size: 36 Copynumber: 4.9 Consensus size: 35
5123237 TTTAAATCAC
* * ** *
5123247 GAGTCAAGAAATGAAAATGATCGTGATTAAAACAT
1 GAGTCAAAAAATGAAAATGACCAAGATTAAAACGT
** *
5123282 GAGTCAAAAAATGAAGAACCACCAAGATTAAATCGT
1 GAGTCAAAAAATGAA-AATGACCAAGATTAAAACGT
* * *
5123318 AAGTCAAAAAAATGAAAATGACCACGATTAAACCGT
1 GAGTC-AAAAAATGAAAATGACCAAGATTAAAACGT
* * * **** * *
5123354 GAGTC-GAAAATAAAAACGATGGGGATTAAACCAT
1 GAGTCAAAAAATGAAAATGACCAAGATTAAAACGT
* * *
5123388 GAGTCAAAAAATGGAAATGACTATGATTAA
1 GAGTCAAAAAATGAAAATGACCAAGATTAA
5123418 NNNNNNNNNN
Statistics
Matches: 103, Mismatches: 30, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
34 26 0.25
35 30 0.29
36 37 0.36
37 10 0.10
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (35 bp):
GAGTCAAAAAATGAAAATGACCAAGATTAAAACGT
Found at i:5124852 original size:35 final size:36
Alignment explanation
Indices: 5124780--5142613 Score: 691
Period size: 35 Copynumber: 509.2 Consensus size: 36
5124770 AGTTGTCAAA
* *
5124780 ATTAAATCACAAGTCAGAAAATGAAAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
5124816 ATTAAACCACAAGTTAGAAAAT-AAAAATGAAC-AGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATG-ACTAGG
* * * * ** * *
5124851 ATTAAACTACTAGTTAGAAAAAGTAAAACAATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * ***
5124887 ATTAAATCATATGTCAGAAAATGAAAATTTTTTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * *
5124922 ATTAAA-C-TGAGTCAAAAAATG-AAAATGACTTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGAC-TAGG
* * * * *
5124955 ATTAAACCTCGAGTTAGAAAAT-TAAAACGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5124990 ATTAAATCATGAGTTATAAAAT-AAAGATTGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAA-AATGACTAGG
* * *
5125026 ATTAAACC-CTGAGTCAAAAAATGAAAACA--A-TCAGG
1 ATTAAACCAC-AAGTTAGAAAATGAAAA-ATGACT-AGG
**** * *
5125061 ATTAAACCTTGCGTCA-AGAAATG-AAAAGGA-TAAGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACT-AGG
* * * *
5125096 ATTAAACCACGAGTCAAAAAAT-AAAAATGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * * *
5125131 ATTAAACTATC-TGTCAGAAAAAGAAAAATGATTGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
** * ** * *
5125167 ATTAAACCATGAGTCAGAAAAT-AAAAACAACCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5125202 ATTAAATCACGAGTCAGAAAATG-AAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5125237 ATTAAATCATGAGTTAAAAAATG--AAACGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * *
5125271 ATTAAA-C-C-A--T----AA-G-TCAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * *
5125296 ATTAAACCACGAGTGAAAAAATG-GAAACGACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5125331 ATTAAACCA-AGAGTCAAAAAAT-AAAAAT-AGCTAGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGA-CTAGG
**
5125366 ATTAAACCATGAGTTAGAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* *
5125401 ATTAAACCACTAGTTAGAAAAT-AAAAATGACTATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * ** *
5125436 ATTAAA-TAGCGAGTCAAAAAAT-AAAAACAACTGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* *
5125471 ATTAAACCACCAA-TTAGAAAA-AAAAAATTGATTGAGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAA-TGACT-AGG
* * * * *
5125508 -TTAAACAATAAGTTAAAAAATG-AAAACGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * ** * *
5125542 ATTAAATCACGAGCCAAAAAATG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5125577 ATTAAACCACAAGTTAAAAAATGAAAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * *
5125613 ATTAAACCATGAGTTAGAAAATG-AAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * * *
5125648 ATTAAACCATTAGTCAGAGAATGAAAAATGA-TTGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5125684 ATTAAATCATGAGTCAAAAAATG-AAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5125719 ATTAAATCACAAGTTAGAGAA-GAAAAATGACCT-GA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * ** **
5125754 ATTAAACCA-AGAGTCA-AACAATGAAAACTTTC-AAA
1 ATTAAACCACA-AGTTAGAA-AATGAAAAATGACTAGG
** ** * **
5125789 ATTAAACCATGAGACAAAAAATG-AAAACCA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * * * * *
5125824 ATTAAACCACCAGTCAAAAAATGAAAAACGAATGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5125860 ATTAAACTAGGAGTCAGGAAATG-AAATTGATCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** * *
5125895 ATTAAACCATGAGTCA-AAAAGTG-AAAACGACT-GAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAG-G
* * * *
5125930 ATTAAACCACGAGTCAAAAAAT-TAAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5125965 ATTAAATCACGAGTCAAAAAATG-AAAACGACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * **
5125999 AATTAAATCACAAGTCAAAAAAT-AAAAACAACCTA-G
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* *
5126035 ATTAAACCACAAGTAAGAAAATGAAAGATGAC-AGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** ** * *
5126071 ATTAAACTATGAGTTAGAAAATGAAAACGGTC-GGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5126106 ATTAAACCATGAGTCAAAAAATGAAAACA--ACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * *
5126141 ATTAAACCATAAG-T------T--AACA--ACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5126166 ATTAAACAATAAGTTAGAAAATG-AAAACGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * **
5126201 ATTAAACCACGAGTCAGATAATGAAAAA-CAATAAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * * **
5126237 AATAAACTATAAGTCAAAAAATG-AAAATGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * * ** *
5126272 ACTAAATCATAAGTCAGAGAAT-AAAAGCGACCTA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * * **
5126307 ACTAAACCA-AGAG-TAAAAGAATGAAAACT-TCTAAA
1 ATTAAACCACA-AGTTAGAA-AATGAAAAATGACTAGG
** ** * **
5126342 ATTAAACCATTAGACAAAAAATG-AAAACCA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* *
5126377 ATTAAACCATAAGTCAGAAAATGAAAAATGAAC-AGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATG-ACTAGG
** * * *
5126413 ATTAAACCA-AGAGACAGAAAAT-AAAATTGACCAAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
* ** * *
5126448 ATTAAATCATGAGTCA-AAAAGTG-AAAACGACT-GAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAG-G
** * *
5126483 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5126518 ATTAAACCACAAGTTAGAAAATG-AAAA-GACCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5126552 ATTAAAGCACAAGTCAAAAAATG-AAAATGACCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** *
5126587 ATTAAACCATGAGTTAGAAAATGAAAGATGAC-AGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** ** * * *
5126622 ACTTAAGCAATGAGTTAGAAAATG-AAACGGCCGA-A
1 A-TTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * *
5126657 ATTAAACCATTAGTCA-AAAATG-AAAATGACCCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** ** * *
5126691 ATTAAATAATGAGTCAGAAAATG-AAAATGACTCGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5126726 ATTAAACCATAAGTCAAAAAAT-AAAATTGA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * *
5126761 A-TAAACCACCAGTCAGAAAAAT-AAAAATGA-TCAAG
1 ATTAAACCACAAGTTAG-AAAATGAAAAATGACT-AGG
* ** *
5126796 ATTAAACTATGAG-TAAAAAAT-AAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * *
5126830 ATTAAACCACGAGCCAAAAAATG-AAAATGA-TTGTA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * *
5126865 ATTAAACCATGAGTCA-AAAA-AAACAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAA-AAATGACT-AGG
* * *
5126900 ATTAAACCACTAGTTAGAAAA-GACAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * *
5126935 ATTAAACTGCTAGTTAGAAAA-GAAAAATGAC-CGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
**
5126969 TATTAAACCATGAGTTAGAAAATG-AAAATGACTA-G
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5127004 ATTAAACCACAAGTCAGCAAATG-AAAACGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * *
5127039 ATTAAACC-GTAGTCAAAAAAT-AAAAATCAATTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
*
5127074 ATTAAACCAAAAGTTAGAAAATG-AAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5127109 ATTAAACCA-AGAGTCAAAAAAT-AAAAATGA-TCGAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
** * * * * *
5127144 ATTAAACCACTTGTCAAAAAATGAAAAATGCCCATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5127180 ATTAAATCACCTGTCAAAAAATGAAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * **
5127216 ATTAAACCACTACTCAGAAAATG-AAAAGGACTATT
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * * *
5127251 ATTAAATCATGAGTCAAAAAATGGAAACA--ACCAAG
1 ATTAAACCACAAGTTAGAAAAT-GAAAAATGACTAGG
* * * *
5127286 ATT-AACCACGAGTCAAAAAATG-AAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * *
5127320 ATTAAACCATGAGCTAGAAAATG--AAATTACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * *
5127354 ATTAAACCACTGGTCAAAAAAT-AAAAAGGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * *
5127389 ATTAAACCATGAGTCAAAAAATG-AAAACGATCGTA--
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-C-TAGG
* * *
5127424 ATTAAACCACCTA-TTAGAAAAAGAAAAATGACTGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5127460 ATTAAATCACTAGTAAGAAAATG-AAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5127495 ATTAGACCACAAGTCA-AAAA-GTAAAA--A-T--G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * ** **
5127524 A--AAACGACCGAGATTAAACCATGAGTCAATGACTAGG
1 ATTAAACCA-CAAG-TTAGAAAATGA-AAAATGACTAGG
* * * * *
5127561 ATTAAATCACGAGTCAGAAAATG-AAAATG-CCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5127595 ATTAAACCATGAGTTAGAGAAA-G-GAAACGA-TCGGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACT-AGG
** * * *
5127630 ATTAAACCATTAGCTAGAAAAT-AAAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5127665 ATTAAATCACAAGTTAAAAAAT-AAAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5127700 ATTAAACCACTAGTCAGAAAAAGAAAAATGATCGAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** ** * *
5127737 -TTAAACCATGAGCCAAAAAATG-AAAATGACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** * *
5127771 ATTACATCATGAG-TCGAAAAATG-AAAATGA-TCA-T
1 ATTAAACCACAAGTTAG-AAAATGAAAAATGACT-AGG
* ** * * *
5127805 ATTAGACCATGAGTCAAAAAATAAAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * * *
5127841 ATTAACCCATGAGTCAAAAAATG-AAAATGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * **
5127876 ATTAAACCATGAGTTAGAAAAT-AAAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5127911 ATTAAATCATAAGTCAGAGAAAT-AAAAATGAC-CGAA
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
** * * *
5127947 ATTAAATTA-AGAGTCA-AAATTGAAAACA--ACT-GAA
1 ATTAAACCACA-AGTTAGAAAATGAAAA-ATGACTAG-G
* ** **
5127981 ATTAAATCATGAGACAGAAAATGAAAACA--AC-AGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
** * *
5128016 ATTAAACCATGAGTTAGAAAATGAAAAATGAATAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** * * * *
5128052 AATAAACTAGGAGTCAAAAAATAAAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * * *
5128088 ATTAAACTATGAGTCAAAAAAAG-AAAACGACT-GAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5128123 ATAAAACCACTAGTCAAAAAATG-AAAATGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** *
5128158 ATTAAACTATGAGTCAGAAAATGAAAACA--ACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * *
5128192 AATTAAATCACAAGTCAAAAAATG-AAAATGACCTA-G
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* ** * *
5128228 ATTAAACC-C-A---A-AAAATGAAAGACAATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5128258 ATTAAACTATAGGTTAGAAAATG-AAAATGGCCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * *
5128293 ATTAAACCATGAGTCAAAAAATG-AAAATGACCCA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * *** *
5128328 ATTAAAACCATAAGTAAGAAAAT-AAAACCCA-TCGGG
1 ATT-AAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * **
5128364 ATTAAACCACCAA-TCAGAAAAAGAAAGATGACCGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5128400 ATTAAACCATAAATAAAAAAAT-AAAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5128435 ATTAAACCACGAGTTAGAAAAT-AAAAACGA-TCATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** ** * * * *
5128470 ATTAAATTATGAGTCA-AAAAAGAAAAACGACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * **
5128505 ATTAAACCACTAG-TA-AAAA--AAAAATCACCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5128537 ATGAAACCAC-AGTCAAAAAATG-AAAAT-AATTGTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * *
5128571 ATTAAACCATGAGTCA-AAAAAGAAAAATGACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** *
5128606 ATTAAACCACTAGTTAGAAAA-AAAAAACAACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * **
5128641 ATTAAACCATAAGTCAGAAAATG-AAAATGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * *
5128676 ATTAAACCAGGAGTTAGGAAATG-AAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * ***
5128711 ATTAAACAAC-GGGCCGAAAAATGAAAACAATCG-C-A--
1 ATTAAACCACAAGTTAG-AAAATG-AAA-AAT-GACTAGG
** *
5128746 ATTAAAACCATGAGTTA-AAAAAGAAAAATGA-TCAGG
1 ATT-AAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * ** * * *
5128782 ATTAAATGACTAGCCA-AAAAAGAAAAAAGAC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5128817 ATTAAACTACGAGTCAAAAAATG-AAAACGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5128852 ATTAAACTATGAGTCAGGAAATGAAAACA--A-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* *
5128887 ATTAAACTACGAGTTAGAAAATG-AAAATCGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAAT-GACT-AGG
*
5128923 ATTAAACCATAAG-T----AAT--AAAAT-A-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
5128951 ATTAAACCACAAG-T----AATG-AAAAT-A-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** *
5128980 ATTAAACCATGAGTTA-AAAATTGAAAACA--A-TCAAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAA-ATGACT-AGG
** * * * * **
5129015 ATTAAACCATGACTCAAAAAATGAAAACA-GTC-AAT
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** * * * * **
5129050 ATTAAACCATGAGTAAAAAAATG-AAAACGATTAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** ** *
5129085 ATTAATTCATGAGTTAGAAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * * * *
5129120 ATTAAGTCACATGTCACAAAATG-AAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5129155 ATTAAACCACAAGTTCGAAAATGAAAACA--AC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
** * *
5129190 ATTAAACCATGAGTTAGAAAATGAAAAA-AACTTGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5129225 ATTAAACCACCAA-TCAAAAAAT-TAAAATGACCAAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* * **
5129260 ATTAAACCACAAGTCAGAAAA--AAAAATGACCATA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * **
5129294 ATTAAACCACCTGCT-GAAAAAAGAAAAACAACTAGG
1 ATTAAACCACAAGTTAG-AAAATGAAAAATGACTAGG
* * *
5129330 ATTAAACCATAAGTCA-AAAAGTG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACT-AGG
* *** * * * **
5129365 ATTAAGCCATGGGTCAAAAAAT-AAAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* **
5129400 ATTAAACCACAAGTTAGAGAAT-AAAAATGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * *
5129435 ATTAAACCAAAAGTCA-AATAATGAAAACT-A-TCAGA
1 ATTAAACCACAAGTTAGAA-AATGAAAAATGACT-AGG
** **
5129470 ATTAAACCATGAGACAGAAAATGAAAACA--AC-AGGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTA-GG
* * * *
5129505 ATTAAACAACAAGTTAGAAAATGAAAAAAGAATGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * **
5129541 ATTAAACCAGGAGTCAAAAAAT-AAAAAAGACCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5129576 ATTAAACCACAAGTCAAAAAATGAAAACA--ACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* ** ** *
5129611 CTTAAAAGATGAGTTAGAAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * *
5129646 ATTAAACCATGAGTCAAAAAAT-AAAAACGACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5129680 AATTAAATCACAAGTCAAAAAATG-AAAATGACCTA-T
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * ** * *
5129716 ATTAAACCACGAGTCAAAAAATGAAAGGTGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5129752 ATT-AACCTACAAGTTAGAAAATGAAAACA-G-CCAAG
1 ATTAAACC-ACAAGTTAGAAAATGAAAA-ATGACTAGG
* *** *
5129787 ACTAAACCGTGAGTCAGAAAATG-AAAATGACATA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGAC-TAGG
* *
5129822 ATTAAACAACAAGTCAGAAAAT-AAAAATGA-TCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** ** * * * * *
5129856 ATTAAATTATGAGTAAAAAAAT-AAAACTGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5129891 ATTAAACAACTAG-T--AAAA--AAAAATGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5129922 ATTAAACCACAAATCAAAAAATTAAAACA--ACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * *
5129957 ATTAAACCATAAGTCAAAAAAT-AAAAATGA-TCGCA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * **
5129992 ATTAAACCATGAGTCA-AAAAAGAAAAACAACT-GAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5130027 ATTAAACCACCAGTCAGAAAA-GAAAAATGACAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5130062 ATTAAACCACAAGTCAAAAAATGAAAACA--ATTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** * * * *
5130097 ATTAAACCATGAGTCAAAAAATGTAAATTGACCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * *
5130133 ATTAAACCACGAGTCAGAAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5130168 ATTAAACCACAAGTTAAAAAATG-AAAACGACTAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * **
5130203 ACTAAACCATGAGTTAAAAAATG-AAAATGACCAAT
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5130238 ATTAAGCCAAAAGTCAGAAAATGAAAAA-GA-TTGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * ** *
5130273 ATTAAATCACGAGTCAGAAAATG-AAAGCGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5130308 ATTAAGCCACGAGTCAAAAAAT-AAAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5130343 ATTAAACCATAAGTCAAAAAATG-AAAATGACT-GAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5130378 ATT-AACCACATGTTAAAAAATG-AAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5130412 ATTAAACCATGAA-TCAAAAAATG-AAAATGATCATA--
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGA-C-TAGG
*
5130447 ATTAAACCACCTA-TTAGAAAATGAAAAA-GACTAGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5130482 ATTAAACTATGAGTCA-AAATATAAAAAATGAAT-GAG
1 ATTAAACCACAAGTTAGAAA-ATGAAAAATGACTAG-G
* * * * * * **
5130518 ATTAAGCCATAAGTCAAAAAAT-AAAAATAGTCAAAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAAT-GAC-TAGG
* * * * *
5130555 ATTAAATCACGAGTCA-AAAATTG-AAAATGACAAAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAGG
* * * *
5130590 ATTAAA-C-C-A--T---AAGT-CAACA--ACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5130615 ATTAAATCACGAGTTAGAAAATG-GAAACGA-TCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * *
5130650 ATTAAACCATGACTCAAAAAATG-AAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5130685 ATTATACCACAAGTGAGAAAATG-AAACTGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * *
5130720 ATTAAATCACCAGTCAAAAAAT-AAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * *
5130755 ATTAAACCATGAGTCAAAAAATGAAAACA--ACT-GAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* * * *
5130790 ATTAAATCACCAA-TCAGAAAAAGAAAATTGA-TCAGTG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACT-AG-G
* * *
5130827 -TTAAACTATAAGTTAGAAAATG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * *
5130861 ATTAAATCATGAG-TCGAAAAATGAAAACA--ACCAGG
1 ATTAAACCACAAGTTAG-AAAATGAAAA-ATGACTAGG
* * * *
5130896 ATTAAACCACAAGTCAAAAAATAAAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5130932 ATT-AACTCACGAGTCAAAAAATG-AAAATGACCAAG
1 ATTAAAC-CACAAGTTAGAAAATGAAAAATGACTAGG
* * * * **
5130967 ATTAAACCACGAGTCAAAAAATGAAAAACGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * *
5131003 ATT-AACCATGAGTCAAAAAATG-AAAACGA-TTGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** **
5131036 AATTAAATCACTAA-TTAGAGAAT-AAAAACAACTAAA
1 -ATTAAACCAC-AAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5131072 ATTAAACCACGAGTCA-AAGAATGAAAACT-ACAAGA
1 ATTAAACCACAAGTTAGAA-AATGAAAAATGACTAGG
* ** *
5131107 ATTAAACCATAACATAAAAAATGAAAACA--AC-AGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* ** * *
5131142 ATTAAACTATGAGTTAAAAAATGAAAAATGAGC-AAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * * *
5131178 ATTAAATCGA-GAGTTAAAAAAT-AAAAATGATTGGG
1 ATTAAA-CCACAAGTTAGAAAATGAAAAATGACTAGG
* * * **
5131213 ATTAAATCA-AGAGTCAAAAAATG-AAAATGA-TCAAA
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACT-AGG
* * * * * ** *
5131248 ATTAAATCATAAATCAAAAAAT-AAAAACAACCCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
*** *
5131283 ATTAAACCTTGAGTCAGAAAATG-AAAA--A-T--G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * ** * *
5131313 A-TCAACCATGAGTCAGACAA-GGGAAATG-GTTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5131347 ATTAAGCCATGAGTCAGAAAATG-AAAATTACCCA-T
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* ** * * *
5131382 ATTAAACAATGAGTCAAAAAATG-AAAATAATCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* **
5131417 ATTAAATCATGAGTTAGAAAAT--AAAATCGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAAT-GACT-AGG
* * * *
5131452 ATTAAACTATC-AGTCAAAAAAAGAAAAATGACT-GTG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5131488 ATTAAACCACGAGTCAAAAAATG-AAAATGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5131523 ATTAAACCACGAGTTAGAAAATGAAAACT-A-TTGCG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
**
5131558 ATTAAATAACAAGTTAG--AA--AAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * *
5131590 ATTAAACCATGAGTCAAAAAATG-AAAACGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * *
5131625 ATTAAACTGCAAGTCA-TAAATTAAAATTGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5131660 GTTAAACC-CTAAGTCA-AAAA-AAACAAACGACT-GAC
1 ATTAAACCAC-AAGTTAGAAAATGAA-AAATGACTAG-G
* * *
5131695 ATTAAACCCCAGGTCAGAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5131730 ATTAAACCACAAGTCAAAAAATG-AAAACGATCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * * *
5131765 ATTAAACTGA-TA-TTCAAAAAATAAAAAATGACTGGG
1 ATTAAAC-CACAAGTT-AGAAAATGAAAAATGACTAGG
* * * * * *
5131801 ATTAAACTACAGGTCAAAAAATG-AAAATGA-TCGAT
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5131836 ATTAAACTATTAA-TTAGAAAATG-AAAATGA-TCAAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACT-AGG
* * * *
5131871 ATTAAATCACAAGTCAAAAAATGAAAACGATTAAACCACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA--A-T----GACTAGG
** *
5131914 ATTAAACCATGAGTTGGAAAATG-AAAATGAC-AGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** *
5131949 ATTAAATCATGAGTTAAAAAATG-AAAATGACTTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGAC-TAGG
* *
5131984 ATTAAACCACCAA-TCAGAAAATG-AAAATGA-TCAAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACT-AGG
** * * **
5132019 ATTAAACCATGAGTCAG-AAATGAAAACA--ACAATA
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * *
5132053 ATTAAACCACCTA-TTAGAAAA-AAAAAACT-ACCAGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAA-TGACTAGG
* * * *
5132088 ATTAAACTACGA-TTCAAAAAATG-GAAATGACT-GAG
1 ATTAAACCACAAGTT-AGAAAATGAAAAATGACTAG-G
* * *
5132123 ATTAAACCACAAGTCAAAAAATG-AAAATGA-TCGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * *** * *
5132157 AATTAAACTACACCTCA-ACAAATGAAAAGCAATTGGG
1 -ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* * * * * *
5132194 ATTAAGCCGCGA-TCAAAAAATG-AAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * ** *
5132228 ATTAAACCACAAGTCAGAGAATGGCAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * *
5132264 ATTAAACTATGAGTCAAAAAATG-AAAATGA-TAGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * **
5132299 ATTAAATCATGAGTCAGAGAAT-AAAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5132334 ATTAAA-C-CAAGTGTCAGAGAATG-AAAACGA-TCAGA
1 ATTAAACCACAAGT-T-AGAAAATGAAAAATGACT-AGG
5132369 ATTAAACCACAAGTTAGAAAATG-AAAATGAC-AGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** * * *
5132404 ATTAAACTACGTGTTAAAAAAATGAAAAATGAATGGG
1 ATTAAACCACAAGTT-AGAAAATGAAAAATGACTAGG
* * * **
5132441 ATTAAACTA-AGAGTCAAAAAATG-AAAATGACTAAA
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
* * *
5132476 ATTAAATCACAAGTTAGAAAATG-AAAACGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
5132511 ATTAAACCACAAGTTAGAAAATG-AAAATGAC-AGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
*
5132546 ATTAAACTACAAGTTAGAAAATG-AAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * *
5132581 ATTAAGCCATGAGTCA-AAAAT-ACAAAATTACTGGG
1 ATTAAACCACAAGTTAGAAAATGA-AAAATGACTAGG
** ** * * **
5132616 ATTAAATTATGAGTCAGAGAAAT-AAAAATGACCAAT
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* ** * * *
5132652 ATTAAATCATGAGTCAAAAAAT-AAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * *
5132687 ATTAAACCATGAGTCAAAAAATG-AAAATGA-TAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** ** * * * *
5132721 AATTAGATTAGTAGTTAAAAAAT-AAAAACGA-TTGAA
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *** *
5132757 AATAAACCATGGGTCAGAAAATGAAAACA--AC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTA-GG
* ** * *
5132792 ATTAAATCATGAGTCAGAAAATGAAAACA--A-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACT-AGG
* ** * *
5132827 ATTAAAACATGAGTTAGAAAATG-AAAACGACCTA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * * *
5132862 ATTAAA-CAAAGAGTCAAAAAATG-AAAACGA-TCGAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* ***** * *
5132897 ATAAAAATGTGAGTTAGAAAATGAAAAACGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * *
5132933 ATTAAACCATAAGTCAGAAAATG-AATACGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** *
5132968 TTTAAACCATGAGTTA-AGAAATG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACT-AGG
* * *
5133003 ATTAAAATCACTAGTCA-AAAATGAAAAATGACTAGG
1 ATT-AAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5133039 ATTAAACCACGAGTCAAAAAATG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5133074 ATTAAACCACAAGTCAAAAAATGAAAACA--ATCAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGA-CTAGG
**
5133110 -TTAAACCATGAGTTGAAAATGAAAATGAAAAGAAAAATGACT-GAG
1 ATTAAACCACAAGTT----A-GAAAAT-----GAAAAATGACTAG-G
* ** * * **
5133155 ATTAAATCATGAGTCAGAAAAAG-AAAATGACTAAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
*
5133191 ATTAAACCA-AGAGTCAGAAAATGAAAAATGACT-GAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
** * * *
5133227 ATTAAACCATGAGTCAAAAAATG-AAAATGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
*
5133262 ATTAAACCACCA-TTCAGAAAATG-AAAATCGAAC-AGG
1 ATTAAACCACAAGTT-AGAAAATGAAAAAT-G-ACTAGG
* *
5133298 -TTAAATCA-AGAGTTAGAAAATG-TAAATGAC-AGGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTA-GG
* * * * *
5133332 ATTAAACCACGAGTCAGAAAATGAAAAA-CAATCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* *
5133368 ATTAAACCACGAGTTAGAAAAT-AAAAATGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *** * * * * **
5133403 AGTAAATTGCCAGTCTA-AAAA-AAAAAATTAATCAAA
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGACT-AGG
* * * * * *
5133439 ATTCAAATCACGAAGTCAAAAAATG-AAAACGACCAAG
1 ATT-AAACCAC-AAGTTAGAAAATGAAAAATGACTAGG
* * * *
5133476 ATT-AA-CACTGAGTCT-GAAAATG-AAAATAATTCGG
1 ATTAAACCAC-AAGT-TAGAAAATGAAAAATGACTAGG
** * * *
5133510 AATTAAACTGGCGAGTCCA-AAAATGAAACATGACTAGG
1 -ATTAAAC-CACAAGT-TAGAAAATGAAAAATGACTAGG
** ** * *
5133548 ATTAAATTATGAGTCAGAAAA--AAAACTAGAACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAAT-G-ACTAGG
* * * * * *
5133584 ATTAAACCACAAATCCAGAAAATG-AACATGGGGCCAAG
1 ATTAAACCACAAGT-TAGAAAATGAAAAAT--GACTAGG
* * * * *
5133622 ATTAAATCATCGAGTTCAGAAAAT--CAAATCGATTGGG
1 ATTAAACCA-CAAGTT-AGAAAATGAAAAAT-GACTAGG
* ** *
5133659 ATTAAACCA-ATGGAACAGAAAAATG-AAAATGACCAAAGG
1 ATTAAACCACA-AG-TTAG-AAAATGAAAAATGA-C-TAGG
* * * *
5133698 ATTAAAATCA-ATGAGTCAAGATAATGAAAAATCGCCTAGG
1 ATT-AAACCACA--AGT-TAGAAAATGAAAAAT-GACTAGG
* **
5133738 GTTAAACCATGAGTTAGAAAAT-AAAAACT-ACTAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAA-TGACT-AGG
* * * * *
5133774 ATTAAACCCCGAGTCAATAAAAGTG-AAAATGACAACCAGCG
1 ATTAAACCACAAGT-TAGAAAA-TGAAAAATG---ACTAG-G
* ** * * *
5133815 ATTAAAGCATGAGTCAAAAAAT-AAAACA--ACTA-T
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** * *
5133848 ATTAAACCATGAGTTTAG-AAATG-AAAATGATTAGA
1 ATTAAACCACAAG-TTAGAAAATGAAAAATGACTAGG
* * ** * *
5133883 ATTAAATCACGAGCCAAAAAAAT-AAAAATGA-TCAAG
1 ATTAAACCACAAG-TTAGAAAATGAAAAATGACT-AGG
** * *
5133919 ATTAAACCATGAGTCAGAAAGT-AAAAATGACCT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* ** * * * * *
5133954 ATTAAATCATGA-TAAAAAAATG-AAAACGAAT-GAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *
5133988 ATTAAATCACAAGTTAGAAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5134023 ATTAAATCATAAGTTAGAAAA-CAAAAATGACAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5134058 ATTAAACCACCAGTCAG--AA--AAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
*** * * *
5134090 ATTAAACCGTGAGTCAGAAAATG-AAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * **** * * **
5134125 ATTAGATCGTGGGTCAGAAAAT-AAAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * * *
5134160 ATTAAATTAGAAGTCAAAAAATG-AAAATAACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5134195 ATTAAACCACTAGTCAAAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * *
5134230 ATTAAACCCCTAGTTAGAAAATGAAAACA--ACCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * *
5134265 ATTAAACCACCAGTCAAAAAATG-AAAAT-AATAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** * * * *
5134300 ATTACACCATGAGTCAAAAAATGAAAACA--ACCATG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * * * *
5134335 ATGAAATCACCAGTCAAAAAAAGAAAAACGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** ** *
5134371 -TT-AACCATGACATAGAAAAT--AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * *
5134403 ATTAAATCACAAGTTAGAAAATG-AAAACGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *
5134438 ATTAAACCATAAGTCA-AAGAATGAAAAATGACT-GAG
1 ATTAAACCACAAGTTAGAA-AATGAAAAATGACTAG-G
* * * * * *
5134474 ATTAATCTACGAGTCA-AAAATGAAAAA-GA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * *
5134508 ATTAAATCATGAGTTAGAGAAT-AAAAATGA-TTGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5134543 ATTAAA-CA-AGAGTCA-AAGAATG-AAAATGA-TTGAA
1 ATTAAACCACA-AGTTAGAA-AATGAAAAATGACTAG-G
** * *
5134577 ATTAAACCATGAGTCAAAAAATG-AAAATGA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * *
5134612 ATTAAACCACGAGTCAAAAAATGAAAAA-GACT-GTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5134647 ATTAAATCATGAGTCAAAAAATAAAAAATGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** ** **
5134683 ATTAAATTATGAGTTAGAGAAAT-AAAAATGACTAAT
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* *
5134719 ATTAAATCACAAGTTAGAAAAT-AAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *
5134754 ATTAAACCACGAGTTAGAAAATG-AAAATGA-TGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5134788 AATTAGATCA-ACAGTCAAAAAATG-AAAATGACT-GAA
1 -ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* * * *
5134824 AATAAACCACAGGTCAAAAAATG-AAAATGAC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** *
5134859 ATTAAATCATGAGTTAGAAAAT-AAAAATGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5134894 ATTAAAACATGAGTCAGAAAATG-AAAACGATCCA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * *
5134929 ATTAAACCA-AGAGTCAAAAAATG-AAAACGACTGGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
* * ** * *
5134964 ATAAAATCATGAGTTA-AAACAT-AAACAATGATTCA-A
1 ATTAAACCACAAGTTAGAAA-ATGAAA-AATGACT-AGG
* * * *
5135000 ATTAAACTACAAATTAGAAAATG-AATACGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** *
5135035 TTTAAACCATGAGTTA-AGAAATG-AAAATGAC-CGAG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
* * *
5135070 ATTAAATCACAAGTCAAAAAATGAAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5135106 ATTAAACAACGAGTTAAAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5135141 ATTAAACCACAAGTTAGAAAGTGAAAACA--ACTCGA
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** * *
5135176 ATTAAACCATGAGTCAGAAAAT-AAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ***
5135211 ATTAAACTAGGAGTCAAAAAATGAAAATGAAAAGAAAAATGACT-GAG
1 ATTAAAC---CA--CAAGTTA-GAAAAT-----GAAAAATGACTAG-G
* **
5135258 ATTAAACCACAAGTCAG--AA--AAAAATGACTAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * **
5135290 ATTAAACCA-AGAGTCAAAAAATAAAAAACAACT-GAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* ** * * *
5135326 ATTAAATCATGAGTCAAAAAATG-AAAACGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5135361 ATTAAACCACTA-TTCTGAAAATGAGAAATGAAT-GG
1 ATTAAACCACAAGTT-AGAAAATGAAAAATGACTAGG
* * * * *
5135396 ATTAAACTA-AGGGTCAAAAAATG-TAAATGA-TAGGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTA-GG
** * * * *
5135431 ATTAAACCATGAGTCAGAAAATGTAAACA--ACCAAG
1 ATTAAACCACAAGTTAGAAAATG-AAAAATGACTAGG
** * *
5135466 ATTAAACCATGAGTTAGAAAATG-AAAAGGAC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** ** * * *
5135501 AGTAAATTACCAACCTA-AAAAAGAAAAATGA-TCGAA
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAG-G
**
5135537 ATTAAACCGTAAGTTAGAAAATGAAAACA--ACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** **
5135572 ATTAAATAATGAGTCT-GAAAATG-AAAATGATCT-GG
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGA-CTAGG
*
5135607 ATTAAACCACAAGTCTA-AAAAT-AAAAATGACTGGG
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGACTAGG
** *
5135642 ATTAAACCATGAGTCCA-AAAA-G--AAATGA-TAGGG
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGACTA-GG
* *** * * * *
5135675 ACTAAACCGTGAGTCAAAAAATG-AAAACGGCTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5135710 ATTAAACCACAAGTCAGAAAAT-CAAAATGA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * * *
5135745 ATTAAACCATGAA-TCA-AAAGATG-AAAATGACCAAG
1 ATTAAACCA-CAAGTTAGAAA-ATGAAAAATGACTAGG
* * *
5135780 ATTAAACCACAAGTTAGATAATGAAAATTGCCTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5135816 GTTAAACCCCGAGTCA-AAAA--AATAAA-GACTATCAGG
1 ATTAAACCACAAGTTAGAAAATGAA-AAATGAC--T-AGG
* * * *
5135852 ATTAAACCCCGAGTCATAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * * *
5135887 ATTAAAGCATGAGTCAAAAAATG-AAAATGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * **
5135922 ACTAAACCCCCAG-CA-AAAA--AAAAAT-AATCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * *
5135954 ATAAAACCACGAGTCAAAAAAT-AAAAATGA-TCAGT
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * * *
5135989 ATTAAATCATAAGTCAAAAAAT-AAAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** ** * *
5136024 ATTAAATAATGAGTCA-AAAACT-AAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAG-G
* * * *
5136059 ATTAAACCACGAGTCAG-AAA-GCAAAAACGACCAGG
1 ATTAAACCACAAGTTAGAAAATG-AAAAATGACTAGG
* * * * * *
5136094 ATTAAACCATAAATCAAAAAAT-AAAAATGAAT-GAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** *
5136129 ATTAAATCATGAGTTAGAAAATGAAAACA--AC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* * * * * *
5136164 ACTAAATCACAAGTCAAAAAAT-AAAAATGACAATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * **
5136199 ATTAAACCGTCAA-TCAAAAAAAGAAAAACGACCGGG
1 ATTAAACC-ACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * **
5136235 ATTAAACCATGAGTCAAAAAATGAAAACT-ACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *** * * **
5136270 ATTAAATCATGGGTCAGAAAATG-AAAACGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * * *
5136305 ATTAAATCATGAGTCAAAAAATGAAAACA--ATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* *
5136340 ATTAAACCACTAGTTAGAAAATG-AAAATGA-TCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * *
5136375 ATTAAACCACTAGTCAAAAAATGAAAACA--ATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
**** * * *
5136410 ATTAAACTGTGAGTCAAAAAATGAAAACA--ACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * *
5136445 ATGAAATCACTAGTTAGAAGAA--AAAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAA-AATGAAAAATGACT-AGG
** * * * * *
5136480 -TT-AATTATAAGTCAAAAAATG-AAAACGA-TTGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5136512 ATCTAAATCACAAGTCAAAAAATG-AAAATGACCAAG
1 AT-TAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5136548 ATTAAACCACGAGTCAAAAAATGAAAAATGA-TCGCG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * * *
5136584 ATTAGCCCATAAGTCACAAAATG-AAAATGACTAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * *
5136619 ATTAAACCATGAGTCAAAAAATGAAAACTG-CCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5136654 ATTAAATCAGAAGTTAGAGAAT-AAAAATGA-TCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* *
5136689 ATTAAACCA-AGAGTCA-AAGAAT-AAAAACT-A-TCAGA
1 ATTAAACCACA-AGTTAGAA-AATGAAAAA-TGACT-AGG
** *
5136724 ATTAAACCATGAGTTAGAAAATGAAAACA--A-TGGGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACT-AGG
* * *
5136759 ATTAAACCA-GAGTCAGAAAATGAAAAATGAAC-AGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATG-ACTAGG
** * * *
5136794 ATTAAACCATTAGTCAGAACATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5136829 ATTAAACCACAATTTA-AAAATG-AAAACGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * *
5136863 ATTAAACCATGAGTCAGAAAATGAAAACA--ACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * **
5136898 ATTAAACCACGAGTCA-AAATATGAAAAACGACCACA
1 ATTAAACCACAAGTTAGAAA-ATGAAAAATGACTAGG
** * * * *
5136934 ATTAAATTACGAGTCAGAGAAATAAAAAATCACT---
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
** * * *
5136968 ATTAAATGACAAGTCAAAAAATG-AAAATGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * *
5137003 ATTTAACCATGAGTTAAAAAATG-AAAACGACGAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * *
5137038 ATGAAATTACCAGTCAAAAAATG-AAAA-GA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5137072 ATTAAACCACGAGTCAAAAAATG-AAAACGAC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
** * * *
5137107 ATTAAATCC-TGAGTCAAAAAATG-AAAATGACTGGG
1 ATTAAA-CCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5137142 ATT-AACCACGAGTTTGAAAATG-AAAATGACCCA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
* * * * *
5137176 ATAAAACCAAAAGTCAAAAAATGAAAACA--AC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* ** * * * *
5137211 ATTAAACCACGAGCCAAAAAATAAAAAACGATTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * *
5137247 ATTGAACCATGAG-CAAAAAATG-AATACGAC-AGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * *
5137281 TTTAAACCACAAGTCA-AGAAATG-AAAATGA-TTGAG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
** * * *
5137316 ATTAAATTACAAGTTAGAAAATTAAAAACGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * *
5137352 ATTAAAGCATGAGTCAGAAAATGGAAACAA--CCCA-G
1 ATTAAACCACAAGTTAGAAAAT-GAAA-AATGACTAGG
* * *
5137387 ATTAAACCACGAGTTAGAAAATGTAAACA--ACTGGG
1 ATTAAACCACAAGTTAGAAAATG-AAAAATGACTAGG
** * ** *
5137422 ATTAAACCATGAGTCA-AAAAACAAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
*** * *
5137457 ATTAAACCACCAA-TTAGAAAAACTAAAATGACCAAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* * * * **
5137493 ATTAAACCTCAAG-T-CAAATTG-AAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5137526 ATTAAACCA-AGAGTCAAAAAATGAAAAATGATTGGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
** * *
5137562 ATTAAACCATGAGTCAGAAAATGAAAAA-GACAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * *
5137597 ATTAAATCATC-ATTTTGAAAATAAAAAATGAATGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* * * ** * * *
5137633 ATTAAACCAAAAGTCATAAAAT-CTAAACGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5137668 ATTAAACTACGAGTAAGAAAATG-AAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** *
5137703 ATTAAACAATGAGTTAGAAAAT-AAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * * * *
5137738 ATTAAACCA-TAGTCAAAAAAAGAAAAA-CAATCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5137773 ATTAAACCACAAGTTAAAAAATGAAAACA--ACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * ** * *
5137808 ATGAAACAATGAGTCAGAAAATGAAAAA-GACTATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5137843 ATTAAACCAGGAGTCAGAAAAT-TAAAATGACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5137878 ATTAAACCATAAGTCAGAAAATG-AAAATGACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5137912 AATTAAATCACAAGTCAAAAAATGAAAACA--ACT-GTG
1 -ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* * ** * *
5137948 AATAAATCATGAGTCAAAAAATG-AAAATGAC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** * * * * *
5137983 ATTCAATTACGAGCTAGAAGATG-AAAACGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5138018 ATTAAACCA-AGAGATA-AGTAATG-AAAACGATCTA-G
1 ATTAAACCACA-AGTTAGA-AAATGAAAAATGA-CTAGG
* ** * * *
5138053 ATTAAATCATGAGTCA-AGAAATG-AAAACGAC-CGTG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
* * * * * **
5138088 ATTAAATCATAAGTCAAAAAAT-AAAAACGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * * *
5138123 ATTAAATTA-AGAGTAAAAAAATAAGAAAACG-CTCAGA
1 ATTAAACCACA-AGTTAGAAAATGA-AAAATGACT-AGG
** * * *
5138160 ATTAAACCATGAGTCAAAAAAATG-AAAGTGACATA-G
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGAC-TAGG
* * * * * * * * *
5138196 ATTAAACAACTAGTCAAAAAAAGAAAAA-CAATCGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5138232 ATTAAACTACGAGTCAAAAAATG-AAAATGACCCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** * *
5138267 ATTAAACCAC-A-TCCGAAAATG-AAAATGACAATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5138300 ATTAAACCATGAGTCAGAAAAAGAAAAATGACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * *
5138336 ATTAAATCATGAGTCAAAAAAT-AAAAATGAATAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5138371 ATTCAATCGCGAGTTAAAAAATG-AAAATGATCGTA--
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-C-TAGG
* * **
5138406 ATTAAACCATAAGTCA-AAAAACAAAAATGACTCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* *
5138441 ATTAAACCACAAGTCAGAAAATG-AAAATGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** *
5138476 ATTAAACCATGAGTTAG-AAA--AAAAATGA-TCATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * **
5138509 ATTAAACCATGAGTCAAAAAAT-TAAAATGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * ** * *
5138544 ATTAAATTATGC-A-TAAAAAAATGAAGGATGATTGGG
1 ATTAAACCA--CAAGTTAGAAAATGAAAAATGACTAGG
*
5138580 ATTAAACCACGAGTTAGAAAATG-AAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *** * *
5138615 AATAACCCATGCGTGAGAAAATG-AAAATG-TTCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * * * *
5138650 ATTAAATCATGAGTCAAAAAATG-AAAATAACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * * *
5138685 ATTAAACCACTAGTCAAAAAAAGGAAAAT-AATCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * * * *
5138721 ATTAAACCACCGGTCAGAAAAT-AAAGACGA-TCGAC
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5138756 ATTAAGCCACGAGTCAAAAAATG-AAAATAACCTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** * * * *
5138791 ATTAAACCATGAGTCAAAAAAT-AAAAAT-AATTGTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* ** * * * * **
5138826 ATTAATCCATGAGTCAAAAAATG-AAAATGCCCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5138861 ATTAAACCACATGTTAGAAAAAGAAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* *
5138897 ATTAAACCATC-AGTTCA-AAATTG-AAAATGA-TCAAG
1 ATTAAACCA-CAAGTT-AGAAAATGAAAAATGACT-AGG
* **
5138932 ATTAAACCACTAG--CCAAAA--AAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* ** * ** *
5138964 ATTAAATCACCCGTCAGAAAATG-AAAACCA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * *
5138999 ATTAAACCACAAGTCAAAAAATG-AAAATGAGCCA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAATGA-CTAGG
** ** *
5139034 ATTAAACCATGAGTCCGAAAAT-AAAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * *
5139069 ATTAAACCATGA-TTCA-AAAAAGAAAAATGA-TCGAG
1 ATTAAACCACAAGTT-AGAAAATGAAAAATGACTAG-G
* * * *
5139104 ATTAAACCATAAGTCAAAAAATG-AACATGACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * *
5139138 AATTAAACGATGAGTCAGAAAATG-AAAACGATTGGG
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * ** * *
5139174 ATTAAACCATGAGTCAAAAAAT-AAAAACAATTAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5139209 ATTAAACCATGAGTCAAAAAATGAAAAATGACTATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * * *
5139245 ATTAAATAACGAGTCAAAGAAAT-AAAAAAGA-TTGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* * * ** *
5139280 TATTAAA--TC-AGTCAAAAAAACAAAAAAGACT-GG
1 -ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * *
5139313 TATTAAATCAGAAGTCA-AAAGATGAAAACA--AC-CGAG
1 -ATTAAACCACAAGTTAGAAA-ATGAAAA-ATGACTAG-G
* * *
5139349 ATT-AACCTACGA-TTCAAAAAAT-AAAAATGA-TGGG
1 ATTAAACC-ACAAGTT-AGAAAATGAAAAATGACTAGG
* * * * * *
5139383 ATTCAAATCATCGA-TCAAAAAATG-AAACTGACCAGG
1 ATT-AAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
*
5139419 ATTAAACCACAAGTCAGAAAAT-AAAAATGAC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* ** * *
5139454 ATTAAATCATGAGTCA-AGAAATG--AAATGACTGGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* ** * * *
5139488 ATTAAATCATGAGTCAGAAAATG-AAAACGA-TTGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * ** * *
5139523 ATTAATCTATGAGTCA-AAAATTG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAG-G
* * *
5139558 ATTAAACCATC-AGTCAGAAAA--AAAAATGATTGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5139592 ATTAAA-CATGAGTTAGAAAATGAATACT-ACCATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * * ** * *
5139627 -CTACACTATGAGTCA-AGAAATG-AAAACGA-TCAGG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACT-AGG
* ** * * **
5139661 ATTAAATCATGAGTTAGAAAATGAATACT-ACCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * ** * *
5139696 GTTACATTACGAGTCA-AGAAATGAAAATGATCGGGATTAACTAGG
1 ATTAAACCACAAGTTAGA-AAATGAAAA--AT---G----ACTAGG
** ***
5139741 ATTAAACCA-TGGTTAGAAAATG-AAAATGACTCTA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5139775 ATTAAACCA-AGAGTCAGAAAATG-AATATGACT-GAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* *
5139810 ATTAAACCACAA-TTCAAAAAATGAAAACA--ACCCA-G
1 ATTAAACCACAAGTT-AGAAAATGAAAA-ATGA-CTAGG
* * **
5139845 ATTAAACCA-AGAGTCAGAAAAT-AAAAACGACTAAA
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
***** *
5139880 ATTAAATTGTGAGTTAGAAAATGAAAAACGAACT-GG
1 ATTAAACCACAAGTTAGAAAATGAAAAATG-ACTAGG
* * * * * *
5139916 ATTGAACCACGAGTAAGAAAATG-AATATAACCAGTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * *
5139952 -TT-AATTACAAGTCA-AGAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
* * * * **
5139985 ATTAAATCA-ATAGTCAAAAAATGAAAAAAGGTTAGG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAGG
* * * * *
5140021 ACTAAACCACAAGTCAAAAAATG-AAAATGATTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *** * **
5140056 ATTAATCCTTGAGTCAGAAAATGAAAACA--A-TAAAA
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACT-AGG
* * * * * *
5140091 AATAAACCACATG-TAAAAAAAGGAAAACGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* **
5140126 ATTAAACCACAATTTAGAAAATG-AAAATGACCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * ** *
5140161 AGTAAACCACCAGTCAAAAAAAT-AAAAACAACCAGG
1 ATTAAACCACAAGT-TAGAAAATGAAAAATGACTAGG
* ** * * *
5140197 ATTAAAACATTAGTCAAAAAATG-AAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * *
5140232 ATTAAACCATGAGTTAGAAAATCAAACA--ACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * *
5140266 ATTAAATCATGAGTCAGAAAATGAAAAA-GACTATG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * * * *
5140301 ATTAAACTACGACTCAGAGAATGAAAAAT-AATTGTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
** * * *
5140337 ATTAAATTACAAGTAAGAGAAAT-AAAAAAGA-TCAGT
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACT-AGG
* *
5140373 ATTAAATCAC-A---A-ATAA--AAAAATGAC-ATGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * * * * *
5140402 TTTAAATCACGAGTCAAAAAATG-AAAATGACTTGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * **
5140437 ATTAAACCA-AGAGTCAAAAAAT-AAAAATGA-TCAAA
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACT-AGG
* * * * * **
5140472 ATTAAATCGCGAGTCAAAAAATTTAAAATGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * * *
5140508 ATTAAACCATGAGTCAAAAAATG-AATATGACCA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** *
5140542 ATTTAAACTATGAGTTA-AGAAATG-AAAATGA-TCGAG
1 A-TTAAACCACAAGTTAGA-AAATGAAAAATGACTAG-G
* ** * * *
5140578 ATTAAATCATGAGTTATAAAATTGAAAAATGACAAAG
1 ATTAAACCACAAGTTAGAAAA-TGAAAAATGACTAGG
** * * *
5140615 ATTAAACCATGAGTCAGAAAATG-AAAATGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * *
5140650 ATTAAA-CAGCAAGTCAAAAAATG-AAAATGACCA--
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* *
5140683 ATTAAACCACGAGTTAGAAAATG-AAAATGA-TCGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
*
5140718 ATTAAACCACAAGTTTGAAAATG-AAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5140753 ATTAAACCACCAG-T----AA--AAAAAT--C-AAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5140779 ATTAAACCACGAGTCAAAAAATGAAAAACGA-TCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * * * *
5140815 ATTAAAACCATGAGTCATAAAATGAAAACA--ATTGGG
1 ATT-AAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * *
5140851 ATTAAACCACTAGTAAAAAAAT-AAAAAGTGACCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAA-TGACTAGG
* * * *
5140887 ATTAAACCACGAA-TCAGAAAATGAAATACGACTGGG
1 ATTAAACCAC-AAGTTAGAAAATGAAAAATGACTAGG
* * * **
5140923 ATTAAACTAAAAGTCA-AAAAT-AAAAATGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * *
5140957 AATAAACCATCGA-TCAG--AA--AAAAATGATTAGT
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
** * * * *
5140989 ATTAAACCATGAGTCAAAAAAT-TAAAATGAC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5141024 ATTAAA--ACATGATCCA-AAAATG-AAAATGACCAAG
1 ATTAAACCACAAG-T-TAGAAAATGAAAAATGACTAGG
* *
5141058 ATTAAGCCACATGTTAGAAAA-GAAAAATGA-TAGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTA-GG
* * *
5141093 ATTAAACCACAAGTCAAAAAAT-AAAAATGA-TCGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
** * *
5141128 ATTAAACCAGGAGTTAAAAAATG-AAAAT-AATCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* *
5141163 ATTAAACCACCAA--T---CAA--AAAAATGA-TTGAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAG-G
* **
5141193 ATTAAACTATGAGTTAGAAAATG-AAAATGACT-GTG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * * *
5141228 ATTAAATCACGAGTAAAAAAATAAAAAATGA-TTGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5141263 TACTAAATCACAAGTTAAAAAATGAAAACAAG-C-ACG
1 -ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * *
5141299 ATTAAGCCACCTA-TCAGAAAAAGAAAAATGA-TCGAG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAG-G
* * * **
5141335 ATTAAACCACAAGTAAAAAAATG-AAAACGA-TCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * * *
5141370 ATTAAATCACAAGTCAGAAATTG-AAAACGACCAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *** * * *
5141405 ATTAAATCGTGAGTCAAAAAATG-AAAATCGATTA-G
1 ATTAAACCACAAGTTAGAAAATGAAAAAT-GACTAGG
* * * * **
5141440 AGTTAAACC-CTAAGTCAAAAAAAAGAAAACT-ACTAAA
1 A-TTAAACCAC-AAGT-TAGAAAATGAAAAATGACTAGG
* * *
5141477 ATTAAACCCCAAGTTAGAAAATG-AAAAGGTCTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* *
5141512 ATTAAACCA-AGAGTTAAAAAATG-AAAATGA-TCGAG
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* *
5141547 ATTAAACCACCAGTTAG--AA--AAAAATGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * *
5141579 ATTAAACCATGAGTCAGAAAATG-AATATGACTAAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * **
5141614 ATTAAACTATGAGTTTA-AAAATG-AAAATGACCAAA
1 ATTAAACCACAAG-TTAGAAAATGAAAAATGACTAGG
* * * * * *
5141649 ATTAAATCACGAGTCAAAAAAT-CAAAATGACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* ** * *
5141684 ATTAAACGATGAGTCATAAAATGAAAAATGACTAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5141720 GTTAAGCAACAAGTCAGAAAATG-AAAATGACTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * **
5141755 ATTAAACCACGAGTCAAAAAATGAAAAATGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * **
5141791 ATTAAACCATGAGTTGGAAAAATG-ACAATGA-TCAAA
1 ATTAAACCACAAGTTAG-AAAATGAAAAATGACT-AGG
** ** * * * *
5141827 ATTAAATTATGAGTCAGAGAAT-AAAAATGA-TTGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * *
5141862 ATTAAACTA-AGAGTTAGAGAATG-AAATTGA-TCGAA
1 ATTAAACCACA-AGTTAGAAAATGAAAAATGACTAG-G
* * *
5141897 ATTAAACCACGAGTCAAAAAATG-AAAATGA-TAAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * * * *
5141932 ATTAAACCATGAA-TCAAAAAATGAAAAATGAATGGG
1 ATTAAACCA-CAAGTTAGAAAATGAAAAATGACTAGG
* ** * * * * *
5141968 ATTAAACTAGGAGTCAAAAAATG-GAAACGAC-CGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5142003 ATTAAACCACAAGTCAAAAAATG-AAAATGATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
**
5142038 ATTAAACCATGAGTTAGAAAATGAAAACA--ACT-GAG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAG-G
* *
5142073 ATTAAACCATAAGTTAGAAAATGAAAAAAGAC-AGAG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * * * *
5142109 ATTAAACCATAAGTCAGAAAATAAAAAAATAACCAAG
1 ATTAAACCACAAGTTAGAAAAT-GAAAAATGACTAGG
* * * * * * *
5142146 ATTAAA-TATAAGTCAGAGGAAT-AAAAAAGACCAGT
1 ATTAAACCACAAGTTAGA-AAATGAAAAATGACTAGG
* ** *
5142181 ATTAAATCATGAGTTAGAAAAT-AAAAATGA-TCAGA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5142216 ATTAAACCACGAG-T-CAAAATAACAAAATGA-TAGG
1 ATTAAACCACAAGTTAGAAAATGA-AAAATGACTAGG
* * * * * *
5142250 AATTAAATCACCCA-TCAAAAAAATG-AAAATGACCAAG
1 -ATTAAACCA-CAAGT-TAGAAAATGAAAAATGACTAGG
* * * * *
5142287 ATTAAACCATAAGTCAAAAAAT-AAAAAAGACGAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
* * * * *
5142322 ATTAAACCATAAGTCAGAAAATGAAAAATAATTGGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * *
5142358 ATTAAATTACAAGTCAGAAGAAT-AAAAAAGA-TCGAT
1 ATTAAACCACAAGTTAGAA-AATGAAAAATGACTAG-G
* * * * * **
5142394 ATTAAATCATAAGTCAGAAAAT-AAAATTGACCAAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
** * * * *
5142429 ATTAAACCATGAGTCAGAAAAT-CAAAATG-GTAGAA
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACTAG-G
* * * *
5142464 ATTAAATCACTAGTTAAAAAATGAAAACA--ACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
** * * *
5142499 ATTAAACCATGAGTCAGAAAATG-AAAATGAGTCA-A
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
* * *
5142534 ATTAAACCACAAGTCAAAAAATGAAAACA--ACCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAA-ATGACTAGG
* * * * * *
5142569 ATTAGACCACCAGTCAAAAAAAGAAAAACGA-TCAGG
1 ATTAAACCACAAGTTAGAAAATGAAAAATGACT-AGG
5142605 ATTAAACCA
1 ATTAAACCA
5142614 TGGGCCAGAA
Statistics
Matches: 13315, Mismatches: 3118, Indels: 2730
0.69 0.16 0.14
Matches are distributed among these distances:
24 1 0.00
25 46 0.00
26 19 0.00
27 11 0.00
28 32 0.00
29 77 0.01
30 44 0.00
31 48 0.00
32 206 0.02
33 350 0.03
34 1297 0.10
35 7938 0.60
36 2574 0.19
37 387 0.03
38 88 0.01
39 35 0.00
40 32 0.00
41 37 0.00
42 9 0.00
43 23 0.00
44 12 0.00
45 17 0.00
46 13 0.00
47 18 0.00
48 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.20
Consensus pattern (36 bp):
ATTAAACCACAAGTTAGAAAATGAAAAATGACTAGG
Found at i:5125097 original size:106 final size:104
Alignment explanation
Indices: 5124920--5125991 Score: 285
Period size: 106 Copynumber: 10.3 Consensus size: 104
5124910 AAAATTTTTT
* * * * *
5124920 AGATTAAA-CTGAGTCAAAAAATGAAAATGACTTAGATTAAACCTCGAGTTAGAAAATTAAAACG
1 AGATTAAACCTGAGTCAAAAAATGAAAATCAATCAGATTAAACCTCGAGTAAGAAAATGAAAACG
* * * * * *
5124984 ATTAGGATTAAATCATGAGTTATAAAATAAAGATTGACTG
66 ATAAGGATTAAACCACGAGTCAAAAAATAAA-AATGACTG
* * *
5125024 GGATTAAACCCTGAGTCAAAAAATGAAAA-CAATCAGGATTAAACCTTGCGTCAAG-AAATGAAA
1 AGATTAAA-CCTGAGTCAAAAAATGAAAATCAATCA-GATTAAACCTCGAGT-AAGAAAATGAAA
* *
5125087 AGGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGATTG
63 ACGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGACTG
* ** * * ** * *
5125129 AGATTAAACTATCTGTCAGAAAAA-GAAAAATGATTGGGATTAAACCAT-GAGTCAGAAAATAAA
1 AGATTAAAC-CTGAGTCA-AAAAATG-AAAATCAATCAGATTAAACC-TCGAGTAAGAAAATGAA
* ** * * * *
5125192 AACAACCAGAATTAAATCACGAGTCAGAAAATGAAAATGA-TCG
62 AACGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGACT-G
* * * * * **
5125235 AAATTAAATCATGAGTTAAAAAATG-AAA-CGACCAAGATTAAA-C-C-A-TAAGTCAATG---A
1 AGATTAAA-CCTGAGTCAAAAAATGAAAATCAATC-AGATTAAACCTCGAGTAAGAAAATGAAAA
* * ** * *
5125291 C--CAA-GATTAAACCACGAGTGAAAAAATGGAAACGAC-C
64 CGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGACTG
* * * *
5125328 AGGATTAAACCAAGAGTCAAAAAATAAAAAT--AGCTAGGATTAAACCAT-GAGTTAGAAAATGA
1 A-GATTAAACC-TGAGTCAAAAAATGAAAATCAATC-A-GATTAAACC-TCGAGTAAGAAAATGA
* * * * *
5125390 AAATGATCAGGATTAAACCACTAGTTAGAAAATAAAAATGACT-
61 AAACGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGACTG
* * ** * * * * **
5125433 ATGATTAAATAGC-GAGTCAAAAAAT-AAAAACAACTGGGATTAAACCACCAATTAGAAAAAAAA
1 A-GATT-AA-ACCTGAGTCAAAAAATGAAAATCAA-TCAGATTAAACCTCGAGTAAGAAAATGAA
* * * ** * * * *
5125496 AATTGATTGAGG-TTAAACAATAAGTTAAAAAATGAAAACGA-TCA
62 AA-CGA-TAAGGATTAAACCACGAGTCAAAAAATAAAAATGACT-G
* * * * *
5125540 AGATTAAATCAC-GAGCCAAAAAATGAAAAT-GATCGGGATTAAACCACAAGTTAA-AAAATGAA
1 AGATTAAA-C-CTGAGTCAAAAAATGAAAATCAATC-AGATTAAACCTCGAG-TAAGAAAATG-A
* * * * * *
5125602 AAATGACCAA-GATTAAACCATGAGTTAGAAAATGAAAATGA-TCG
61 AAACGA-TAAGGATTAAACCACGAGTCAAAAAATAAAAATGACT-G
* * * * * * * * *
5125646 AAATTAAACCATTAGTCAGAGAATGAAAAATGATTGAAATTAAATCAT-GAGTCAA-AAAATGAA
1 AGATTAAACC-TGAGTCAAAAAATG-AAAATCAATCAGATTAAA-CCTCGAGT-AAGAAAATGAA
* * * * * * *
5125709 AATGATCGAA--ATTAAATCACAAGTTAGAGAAGAAAAATGACCTG
62 AACGAT--AAGGATTAAACCACGAGTCAAAAAATAAAAATGA-CTG
* * ** * *
5125753 A-ATTAAACCAAGAGTCAAACAATGAAAA-CTTTCAAAATTAAACCAT-GAG-ACAAAAAATGAA
1 AGATTAAACC-TGAGTCAAAAAATGAAAATCAATC-AGATTAAACC-TCGAGTA-AGAAAATGAA
* * * * *
5125814 AACCATAGGGATTAAACCACCAGTCAAAAAATGAAAAACGAATG
62 AACGATAAGGATTAAACCACGAGTCAAAAAAT-AAAAATGACTG
* ** ** *
5125858 GGATTAAA-CTAGGAGTCAGGAAATG-AAATTGATCTAGATTAAACCAT-GAGTCAA-AAAGTGA
1 AGATTAAACCT--GAGTCAAAAAATGAAAATCAATC-AGATTAAACC-TCGAGT-AAGAAAATGA
* *
5125919 AAACGACTGA-GATTAAACCACGAGTCAAAAAATTAAAATGACT-
61 AAACGA-TAAGGATTAAACCACGAGTCAAAAAATAAAAATGACTG
5125962 AGGATTAAATCAC-GAGTCAAAAAATGAAAA
1 A-GATTAAA-C-CTGAGTCAAAAAATGAAAA
5125992 CGACTGGAAT
Statistics
Matches: 717, Mismatches: 172, Indels: 156
0.69 0.16 0.15
Matches are distributed among these distances:
93 2 0.00
94 45 0.06
95 12 0.02
96 1 0.00
97 2 0.00
98 1 0.00
99 7 0.01
100 6 0.01
101 1 0.00
102 1 0.00
103 3 0.00
104 29 0.04
105 176 0.25
106 376 0.52
107 50 0.07
108 5 0.01
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (104 bp):
AGATTAAACCTGAGTCAAAAAATGAAAATCAATCAGATTAAACCTCGAGTAAGAAAATGAAAACG
ATAAGGATTAAACCACGAGTCAAAAAATAAAAATGACTG
Found at i:5125134 original size:141 final size:141
Alignment explanation
Indices: 5124792--5125207 Score: 310
Period size: 141 Copynumber: 3.0 Consensus size: 141
5124782 TAAATCACAA
* * * * * * * **
5124792 GTCAGAAAATGAAAAATGACTAGGATTAAACCACAAGTTAGAAAATAAAAATGAACAGGATTAAA
1 GTCAAAAAATG-AAAAGGACTAAGATTAAACCACGAGTCAAAAAATAAAAACGATTAGGATTAAA
* * ** * * * ******
5124857 CTA-CTAGTTAGAAAAAGTAAAACAATTGGGATTAAATCAT-ATGTCAGAAAATGAAAATTTTTT
65 CTATC-AGTCAGAAAAAGAAAAATGACTGGGATTAAACCATGA-GTCAAAAAAT-AAAAACAACC
*
5124920 AG-ATTAAA-C-TGA
127 AGAATTAAACCTTGC
* * * * * *
5124932 GTCAAAAAATGAAAATGACTTAGATTAAACCTCGAGTTAGAAAATTAAAACGATTAGGATTAAA-
1 GTCAAAAAATGAAAAGGACTAAGATTAAACCACGAGTCAAAAAATAAAAACGATTAGGATTAAAC
* * * * * * * *
5124996 TCATGAGTTATAAAATA-AAGATTGACTGGGATTAAACCCTGAGTCAAAAAATGAAAACAATCAG
66 T-ATCAGTCAGAAAA-AGAAAAATGACTGGGATTAAACCATGAGTCAAAAAATAAAAACAACCAG
*
5125060 GATTAAACCTTGC
129 AATTAAACCTTGC
* *
5125073 GTCAAGAAATGAAAAGGA-TAAGGATTAAACCACGAGTCAAAAAATAAAAATGATT-GAGATTAA
1 GTCAAAAAATGAAAAGGACTAA-GATTAAACCACGAGTCAAAAAATAAAAACGATTAG-GATTAA
* * *
5125136 ACTATCTGTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAACAACCAG
64 ACTATCAGTCAGAAAAAGAAAAATGACTGGGATTAAACCATGAGTCAAAAAATAAAAACAACCAG
5125201 AATTAAA
129 AATTAAA
5125208 TCACGAGTCA
Statistics
Matches: 218, Mismatches: 47, Indels: 21
0.76 0.16 0.07
Matches are distributed among these distances:
138 7 0.03
139 85 0.39
140 17 0.08
141 108 0.50
142 1 0.00
ACGTcount: A:0.50, C:0.10, G:0.16, T:0.23
Consensus pattern (141 bp):
GTCAAAAAATGAAAAGGACTAAGATTAAACCACGAGTCAAAAAATAAAAACGATTAGGATTAAAC
TATCAGTCAGAAAAAGAAAAATGACTGGGATTAAACCATGAGTCAAAAAATAAAAACAACCAGAA
TTAAACCTTGC
Found at i:5125188 original size:71 final size:71
Alignment explanation
Indices: 5124792--5125193 Score: 217
Period size: 71 Copynumber: 5.7 Consensus size: 71
5124782 TAAATCACAA
* * * ** * *
5124792 GTCAGAAAATGAAAAATGACTAGGATTAAACCACAAGTTAGAAAATAAAAATGA-ACAGGATTAA
1 GTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAATGATTCAGGATTAA
*
5124856 ACTACTA
66 ACTA-TC
* * ** * * ** *
5124863 GTTAGAAAAAGTAAAACAATTGGGATTAAATCAT-ATGTCAGAAAATGAAAATTTTTTA-GATTA
1 GTCAGAAAAAGAAAAATGATTGGGATTAAACCATGA-GTCAGAAAATAAAAATGATTCAGGATTA
5124926 AACTGA--
65 AACT-ATC
* * * *
5124932 GTCA-AAAAATG-AAAATGACTT-AGATTAAACC-TCGAGTTAGAAAATTAAAACGATT-AGGAT
1 GTCAGAAAAA-GAAAAATGA-TTGGGATTAAACCAT-GAGTCAGAAAATAAAAATGATTCAGGAT
*
5124992 TAAA-TCATGA
63 TAAACT-AT-C
* * * * * * * * * *
5125002 GTTATAAAATA-AAGATTGACTGGGATTAAACCCTGAGTCAAAAAATGAAAA-CAATCAGGATTA
1 GTCAGAAAA-AGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAATGATTCAGGATTA
5125065 AACCT-TGC
65 AA-CTAT-C
* * ** * * *
5125073 GTCA-AGAAATG-AAAAGGATAAGGATTAAACCACGAGTCAAAAAATAAAAATGATTGA-GATTA
1 GTCAGA-AAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAATGATTCAGGATTA
5125135 AACTATC
65 AACTATC
5125142 TGTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAA
1 -GTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAA
5125194 CAACCAGAAT
Statistics
Matches: 248, Mismatches: 57, Indels: 52
0.69 0.16 0.15
Matches are distributed among these distances:
67 4 0.02
68 40 0.16
69 10 0.04
70 54 0.22
71 135 0.54
72 4 0.02
73 1 0.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (71 bp):
GTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAATGATTCAGGATTAA
ACTATC
Found at i:5125218 original size:71 final size:69
Alignment explanation
Indices: 5124779--5125250 Score: 203
Period size: 71 Copynumber: 6.7 Consensus size: 69
5124769 GAGTTGTCAA
* * * * ** *
5124779 AATTAAATCACAAGTCAGAAAATGAAAAATGACTAGGATTAAACCACAAGTTAGAAAATAAAAAT
1 AATTAAA-CACGAGTCAGAAAAAG-AAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAA-
*
5124844 GAA-CAG
63 CAATCAG
* * * ** *
5124850 GATTAAACTACTAGTTAGAAAAAGTAAAACAATTGGGATTAAATCAT-ATGTCAGAAAATGAAAA
1 AATTAAAC-ACGAGTCAGAAAAAG-AAAATGATTGGGATTAAACCATGA-GTCAGAAAAT-AAAA
**** *
5124914 TTTTTTAG
62 ACAATCAG
* * * *
5124922 -ATTAAAC-TGAGTCA-AAAAATGAAAATGACTT-AGATTAAACC-TCGAGTTAGAAAATTAAAA
1 AATTAAACACGAGTCAGAAAAA-GAAAATGA-TTGGGATTAAACCAT-GAGTCAGAAAATAAAAA
* *
5124982 CGATTAG
63 CAATCAG
* * * * * * * * *
5124989 GATTAAATCATGAGTTATAAAATA-AAGATTGACTGGGATTAAACCCTGAGTCAAAAAATGAAAA
1 AATTAAA-CACGAGTCAGAAAA-AGAA-AATGATTGGGATTAAACCATGAGTCAGAAAATAAAAA
5125053 CAATCAG
63 CAATCAG
* * * * ** * *
5125060 GATTAAAC-CTTGCGTCA-AGAAATGAAAAGGATAAGGATTAAACCACGAGTCAAAAAATAAAAA
1 AATTAAACAC--GAGTCAGA-AAAAGAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAA
** *
5125123 TGAT-TG
63 CAATCAG
*
5125129 AGATTAAACTATC-TGTCAGAAAAAGAAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAA
1 A-ATTAAAC-A-CGAGTCAGAAAAAG-AAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAA
*
5125193 ACAACCAG
62 ACAATCAG
* * ** *
5125201 AATTAAATCACGAGTCAGAAAATGAAAATGATCGAAATTAAATCATGAGT
1 AATTAAA-CACGAGTCAGAAAAAGAAAATGATTGGGATTAAACCATGAGT
5125251 TAAAAAATGA
Statistics
Matches: 300, Mismatches: 72, Indels: 59
0.70 0.17 0.14
Matches are distributed among these distances:
67 8 0.03
68 33 0.11
69 10 0.03
70 82 0.27
71 155 0.52
72 11 0.04
73 1 0.00
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.23
Consensus pattern (69 bp):
AATTAAACACGAGTCAGAAAAAGAAAATGATTGGGATTAAACCATGAGTCAGAAAATAAAAACAA
TCAG
Found at i:5125335 original size:129 final size:130
Alignment explanation
Indices: 5125166--5125409 Score: 294
Period size: 129 Copynumber: 1.9 Consensus size: 130
5125156 AAATGATTGG
* * * * * *
5125166 GATTAAACCATGAGTCAGAAAATAAAAACAACCAGAATTAAATCACGAGTCAGAAAATGAAAATG
1 GATTAAACCACGAGTCAAAAAATAAAAACAACCAGAATTAAACCAAGAGTCAAAAAATAAAAAT-
* *
5125231 ATCGA-AATTAAATCATGAGTTAAAAAATG-AAACGACCAAGATTAAACCATAAGTCAATGACCA
65 AGCGAGAATTAAACCATGAGTTAAAAAATGAAAACGACCAAGATTAAACCATAAGTCAATGACCA
5125294 A
130 A
* ** * *
5125295 GATTAAACCACGAGTGAAAAAATGGAAACGACCAGGATTAAACCAAGAGTCAAAAAATAAAAATA
1 GATTAAACCACGAGTCAAAAAATAAAAACAACCAGAATTAAACCAAGAGTCAAAAAATAAAAATA
* * * * * *
5125360 GCTAGGATTAAACCATGAGTTAGAAAATGAAAATGATCAGGATTAAACCA
66 GCGAGAATTAAACCATGAGTTAAAAAATGAAAACGACCAAGATTAAACCA
5125410 CTAGTTAGAA
Statistics
Matches: 94, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
128 3 0.03
129 74 0.79
130 17 0.18
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (130 bp):
GATTAAACCACGAGTCAAAAAATAAAAACAACCAGAATTAAACCAAGAGTCAAAAAATAAAAATA
GCGAGAATTAAACCATGAGTTAAAAAATGAAAACGACCAAGATTAAACCATAAGTCAATGACCAA
Found at i:5125981 original size:211 final size:210
Alignment explanation
Indices: 5125659--5126154 Score: 482
Period size: 211 Copynumber: 2.3 Consensus size: 210
5125649 TTAAACCATT
* * * * * * *
5125659 AGTCAGAGAATGAAAAATGATTGAAATTAAATCATGAGTCAAAAAATGAAAATGA-TCGAAATTA
1 AGTCAGAAAATG-AAAACGATCGAGATTAAACCATGAGTCAAAAAATGAAAACGACT-GAGATTA
* * * * * **
5125723 AATCACAAGTTAGAGAAGAAAAATGACCTGAATTAAACCAAGAGTCAAACAATGAAAAC-TTTCA
64 AACCACAAGTCAAAAAAGAAAAATGACCTGAATTAAACCAAGAGTCAAAAAATGAAAACGACT-A
** * *
5125787 AAATTAAACCATGAGACAAAAAATGAAAAC-CATAGGGATTAAACCACCAGTCAA-AAAATGAAA
128 AAATTAAACCACAAGACAAAAAATAAAAACACATA--GATTAAACCACAAGT-AAGAAAATGAAA
5125850 AACGA-ATGGGATTAAACTAGG
190 AACGACA-GGGATTAAACTAGG
* ** * *
5125871 AGTCAGGAAATGAAATTGATCTAGATTAAACCATGAGTCAAAAAGTGAAAACGACTGAGATTAAA
1 AGTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAAAAAATGAAAACGACTGAGATTAAA
* ** * * * **
5125936 CCACGAGTCAAAAAATTAAAATGA-CTAGGATTAAATCACGAGTCAAAAAATGAAAACGACTGGA
66 CCACAAGTCAAAAAAGAAAAATGACCT-GAATTAAACCAAGAGTCAAAAAATGAAAACGACTAAA
* * * * *
5126000 ATTAAATCACAAGTCAAAAAATAAAAACAACCTAGATTAAACCACAAGTAAGAAAATGAAAGATG
130 ATTAAACCACAAGACAAAAAATAAAAAC-ACATAGATTAAACCACAAGTAAGAAAATGAAAAACG
*
5126065 ACAGGGATTAAACTATG
194 ACAGGGATTAAACTAGG
* * * * *
5126082 AGTTAGAAAATGAAAACGGTCGGGATTAAACCATGAGTCAAAAAATGAAAACAACTAAGATTAAA
1 AGTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAAAAAATGAAAACGACTGAGATTAAA
*
5126147 CCATAAGT
66 CCACAAGT
5126155 TAACAACTAA
Statistics
Matches: 230, Mismatches: 47, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
210 4 0.02
211 210 0.91
212 13 0.06
213 3 0.01
ACGTcount: A:0.52, C:0.13, G:0.17, T:0.19
Consensus pattern (210 bp):
AGTCAGAAAATGAAAACGATCGAGATTAAACCATGAGTCAAAAAATGAAAACGACTGAGATTAAA
CCACAAGTCAAAAAAGAAAAATGACCTGAATTAAACCAAGAGTCAAAAAATGAAAACGACTAAAA
TTAAACCACAAGACAAAAAATAAAAACACATAGATTAAACCACAAGTAAGAAAATGAAAAACGAC
AGGGATTAAACTAGG
Found at i:5125987 original size:105 final size:104
Alignment explanation
Indices: 5125294--5148671 Score: 5294
Period size: 105 Copynumber: 223.0 Consensus size: 104
5125284 TCAATGACCA
* * * * * *
5125294 AGATTAAACCACGAGTGAAAAAATGGAAACGACCAGGATTAAACCAAGAGTCAAAAAATAAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * *
5125359 -AGCTAGGATTAAACCATGAGTTAGAAAATGAAAATGA-TC
66 GATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5125398 AGGATTAAACCACTAGTTAGAAAATAAAAATGACTATGATTAAA-TAGCGAGTCAAAAAAT-AAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTCAAAAAATGAAA
** * * ** * * ** *
5125461 AACAACTGGGATTAAACCACCAATTAGAAAAAAAAAATTGATTG
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* * ** * * * * *
5125505 AGGTTAAACAATAAGTTAAAAAATGAAAACGA-TCAAGATTAAATCACGAGCCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
** ** * **
5125569 TGATCGGGATTAAACCACAAGTTAAAAAATGAAAAATGACCA
65 TGATCTAGATTAAACCATGAG-TCAAAAATG-AAAATGACTG
* * * * * ** * *
5125611 AGATTAAACCATGAGTTAGAAAATGAAAATGA-TCGAAATTAAACCATTAGTCAGAGAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATG-AAA
* *
5125675 ATGAT-TGAAATTAAATCATGAGTCAAAAAATGAAAATGA-TCG
64 ATGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * * * *
5125717 AAATTAAATCACAAGTTAGAGAA-GAAAAATGACCT-GAATTAAACCAAGAGTCAAACAATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * **
5125780 ACT-TTCAAAATTAAACCATGAGACAAAAAATGAAAACCA-TAG
64 A-TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * * ** *
5125822 GGATTAAACCACCAGTCAAAAAATGAAAAACGAATGGGATTAAACTAGGAGTCAGGAAATGAAAT
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
*
5125887 TGATCTAGATTAAACCATGAGTCAAAAAGTGAAAACGACTG
65 TGATCTAGATTAAACCATGAGTCAAAAA-TGAAAATGACTG
* * *
5125928 AGATTAAACCACGAGTCAAAAAATTAAAATGACTAGGATTAAATCACGAGTCAAAAAATGAAAAC
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * ** * **
5125993 GA-CTGGAATTAAATCACAAGTCAAAAAATAAAAACAACCT-
66 GATCTAG-ATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
* * * * *
5126033 AGATTAAACCACAAGT-AAGAAAATGAAAGATGAC-AGGGATTAAACTATGAGTTAGAAAATGAA
1 AGATTAAACCACGAGTCAA-AAAATGAAA-ATGACTA-GGATTAAACCACGAGTCAAAAAATGAA
* * ** ** *
5126096 AACGGTCGGGATTAAACCATGAGTCAAAAAATGAAAACAACTA
63 AATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * * *
5126139 AGATTAAA-C-C-A-T----AAGTTAACA--ACTAAGATTAAACAATAAGTTAGAAAATGAAAAC
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * ** * *
5126194 GACCAAGATTAAACCACGAGTCAGATAATGAAAAACAATAA
66 GATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * ** ** * * ** * *
5126235 AAAATAAACTATAAGTCAAAAAATGAAAATGA-TCAAAACTAAATCATAAGTCAGAGAAT-AAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * * *
5126298 GCGACCTAAACTAAACCAAGAGTAAAAGAATGAAAACT-TCTA
65 -TGATCTAGATTAAACCATGAGTCAAA-AATGAAAA-TGACTG
* ** * ** ** *
5126340 AAATTAAACCATTAGACAAAAAATGAAAACCA-TAGGGATTAAACCATAAGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAAAAAATG-AAA
* * * **
5126404 ATGAAC-AGGATTAAACCAAGAGACAGAAAAT-AAAATTGACCA
64 ATGATCTA-GATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* * * * *
5126446 AGATTAAATCATGAGTCAAAAAGTGAAAACGACT-GAGATTAAACCATGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
** * *
5126510 TGA-CTAGGATTAAACCACAAGTTAGAAAATGAAAA-GAC-C
65 TGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * *
5126549 AGAATTAAAGCACAAGTCAAAAAATGAAAATGACCTA-GATTAAACCATGAGTTAGAAAATGAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * * *
5126613 GATGA-C-AGGACTTAAGCAATGAGTTAGAAAATG-AAACGGCCG
64 -ATGATCTA-GA-TTAAACCATGAGTCA-AAAATGAAAATGACTG
* ** * ** * *
5126655 AAATTAAACCATTAGTC-AAAAATGAAAATGACCCA-GATTAAATAATGAGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* *
5126718 TGA-CTCGGATTAAACCATAAGTCAAAAAAT-AAAATTGA-TAG
65 TGATCT-AGATTAAACCATGAGTC-AAAAATGAAAA-TGACT-G
* * * * * * *
5126759 GGA-TAAACCACCAGTCAGAAAAATAAAAATGA-TCAAGATTAAACTATGAGT-AAAAAATAAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * *
5126821 ATGATC-AGGATTAAACCACGAGCCAAAAAATGAAAATGATTG
64 ATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5126863 TA-ATTAAACCATGAGTCAAAAAA-AACAAATGA-TCGGGATTAAACCACTAGTTAGAAAA-GAC
1 -AGATTAAACCACGAGTCAAAAAATGA-AAATGACT-AGGATTAAACCACGAGTCAAAAAATGA-
* * *
5126924 AAATGATCGAGATTAAA-C-TGCTAGTTAGAAAA-GAAAAATGACCG
62 AAATGATCTAGATTAAACCATG--AGTCA-AAAATG-AAAATGACTG
* * * * **
5126968 -GTATTAAACCATGAGTTAGAAAATGAAAATGACTA-GATTAAACCACAAGTCAGCAAATGAAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5127031 CGACCAAGATTAAACCGT-AGTCAAAAAATAAAAATCAATTG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAAT-GACTG
** * * * *
5127072 AGATTAAACCAAAAGTTAGAAAATGAAAATGACTAGGATTAAACCAAGAGTCAAAAAATAAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * **
5127137 GATCGAGATTAAACCACT-TGTCAAAAAATGAAAAATG-CCC
66 GATCTAGATTAAACCA-TGAGTC-AAAAATG-AAAATGACTG
* ** * * * *
5127177 ATGATTAAATCACCTGTCAAAAAATGAAAAATGA-TCGAGATTAAACCACTACTCAGAAAATGAA
1 A-GATTAAACCACGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAA
* * * * ** **
5127241 AAGGA-CTATTATTAAATCATGAGTCAAAAAATGGAAACAACCA
63 AATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * *
5127284 AGATT-AACCACGAGTCAAAAAATGAAAATGA-TCAAGATTAAACCATGAG-CTAGAAAATG-AA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTC-AAAAAATGAAA
* * * *
5127345 ATTA-CCAGGATTAAACCACTG-GTCAAAAAATAAAAAGGA-TCG
64 ATGATCTA-GATTAAACCA-TGAGTC-AAAAATGAAAATGACT-G
* * * *
5127387 AGATTAAACCATGAGTCAAAAAATGAAAACGATCGTA--ATTAAACCACCTA-TTAGAAAAA-GA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-C-TAGGATTAAACCA-CGAGTCA-AAAAATG-
* * * **
5127448 AAAATGA-CTGGGATTAAATCACT-AGTAAGAAAATGAAAATGACCA
61 AAAATGATCT-AGATTAAACCA-TGAGTCA-AAAATGAAAATGACTG
* * * * * **
5127493 AGATTAGACCACAAGTCAAAAAGT-AAAA--A-T--GA--AAACGACCGAGATTAAACCATGAGT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAG-TCAAAAAATGA--
* * * **
5127550 CAATGA-CTAGGATTAAATCACGAGTCAGAAAATGAAAATG-CCA
62 AAATGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * ** * *
5127593 AGATTAAACCATGAGTTAGAGAAA-GGAAACGA-TCGGGATTAAACCATTAG-CTAGAAAATAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACT-AGGATTAAACCACGAGTC-AAAAAATGAA
* * * ** * *
5127655 AATGACCAAGATTAAATCACAAGTTAAAAAATAAAAATGACT-
63 AATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * *
5127697 AGGATTAAACCACTAGTCAGAAAAA-GAAAAATGATCGAGG-TTAAACCATGAGCCAAAAAATGA
1 A-GATTAAACCACGAGTCA-AAAAATG-AAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGA
* * *
5127760 AAATGA-CTAAGATTACATCATGAGTCGAAAAATGAAAATGA-TC
62 AAATGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5127803 ATATTAGACCATGAGTCAAAAAATAAAAAATGA-TCAGGATTAACCCATGAGTCAAAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * * **
5127867 ATGAT-TGGGATTAAACCATGAGTTAGAAAATAAAAATGACCA
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * ** * * * * ** * *
5127909 AAATTAAATCATAAGTCAGAGAAATAAAAATGAC-CGAAATTAAATTAAGAGTC-AAAATTGAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * * * ** *
5127972 A-CAACTGAAATTAAATCATGAGACAGAAAATGAAAACAACAG
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * * *
5128014 AGATTAAACCATGAGTTAGAAAATGAAAAATGAATAAGAATAAACTAGGAGTCAAAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAAAT-GAAA
** * * *
5128079 ATGATCGGGATTAAACTATGAGTCAAAAAAAGAAAACGACTG
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5128121 AGATAAAACCACTAGTCAAAAAATGAAAATGATTAGGATTAAACTATGAGTCAGAAAATGAAAA-
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * **
5128185 CAACTGGAATTAAATCACAAGTCAAAAAATGAAAATGACCT-
66 GATCTAG-ATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
** * * * * * *
5128226 AGATTAAA-C-C----CAAAAAATGAAAGACAATTGGGATTAAACTA-TAGGTTAGAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGA-GTCAAAAAATGAAA
* * **
5128284 ATG-GCCAGGATTAAACCATGAGTCAAAAAATGAAAATGACCC
64 ATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* ** ** * * *
5128326 AAATTAAAACCATAAGT-AAGAAAAT-AAAA-CCCATCGGGATTAAACCACCAATCAGAAAAA-G
1 AGATT-AAACCACGAGTCAA-AAAATGAAAATGAC-T-AGGATTAAACCACGAGTCA-AAAAATG
* ** * * * *
5128387 AAAGATGACCGGGATTAAACCATAAATAAAAAAATAAAAATGACT-
61 AAA-ATGATCTAGATTAAACCATGAGT-CAAAAATGAAAATGACTG
* * * * * ** *
5128432 AGGATTAAACCACGAGTTAGAAAATAAAAACGA-TCATGATTAAATTATGAGTCAAAAAA-GAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATG-AA
* * * * *
5128495 AACGA-CCAGGATTAAACCACT-AGT-AAAAA-AAAAATCACCG
63 AATGATCTA-GATTAAACCA-TGAGTCAAAAATGAAAATGACTG
* * * * *
5128535 GGATGAAACCAC-AGTCAAAAAATGAAAAT-AATTGTGATTAAACCATGAGTCAAAAAA-GAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATG-AAA
* * ** ** *
5128597 ATGA-CCAGGATTAAACCACT-AGTTAGAAAAAAAAAACAACTA
64 ATGATCTA-GATTAAACCA-TGAGTCA-AAAATGAAAATGACTG
** * ** * * **
5128639 AGATTAAACCATAAGTCAGAAAATGAAAATGA-TCAAAATTAAACCAGGAGTTAGGAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5128703 TGATCAAGATTAAACAACGGGCCGAAAAATGAAAA-CAATCG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * ** * *
5128744 CA-ATTAAAACCATGAGTTAAAAAA-GAAAAATGA-TCAGGATTAAATGACTAGCCAAAAAA-GA
1 -AGATT-AAACCACGAGTCAAAAAATG-AAAATGACT-AGGATTAAACCACGAGTCAAAAAATG-
* * * * * *
5128805 AAAAAGACCGAGATTAAACTACGAGTCAAAAAATGAAAACGACT-
61 AAAATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * ** * * * * * *
5128849 AGGATTAAACTATGAGTCAGGAAATGAAAA-CAATTGAGATTAAACTACGAGTTAGAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* *
5128913 ATCGATC-AGGATTAAACCATAAGT----AAT-AAAAT-A-TC
64 AT-GATCTA-GATTAAACCATGAGTCAAAAATGAAAATGACTG
* * * *
5128948 AGGATTAAACCACAAGT-----AATGAAAAT-A-TCAGGATTAAACCATGAGTTAAAAATTGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
** * * * * *
5129006 ACAATCAAGATTAAACCATGACTCAAAAAATGAAAA-CAGTCA
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * ** ** * * *
5129048 ATATTAAACCATGAGTAAAAAAATGAAAACGATTAAAATTAATTCATGAGTTAGAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * **
5129113 GATCGAGATTAAGTCACAT--GTCACAAAATGAAAATGACCA
66 GATCTAGATTAA-AC-CATGAGTCA-AAAATGAAAATGACTG
* * ** * * * *
5129153 AGATTAAACCACAAGTTC-GAAAATGAAAACAAC-CGAGATTAAACCATGAGTTAGAAAATGAAA
1 AGATTAAACCACGAG-TCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * ** * * **
5129216 A-AAACTTGGATTAAACCACCAATCAAAAAATTAAAATGACCA
64 ATGATC-TAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * ** ** *
5129258 AGATTAAACCACAAGTCAGAAAAA--AAAATGACCATAATTAAACCACCTGCTGAAAAAA-GAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACTAGGATTAAACCACGAG-TCAAAAAATGAAA
** * *
5129320 AACAACTAGGATTAAACCATAAGTCAAAAAGTGAAAATGA-TCG
64 ATGATCTA-GATTAAACCATGAGTCAAAAA-TGAAAATGACT-G
* * * * * * ** * * * * *
5129363 GGATTAAGCCATGGGTCAAAAAATAAAAATGACCAAAATTAAACCACAAGTTAGAGAATAAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * ** *
5129428 GATCAAAATTAAACCAAAAGTCAAATAATGAAAACT-A-TC
66 GATCTAGATTAAACCATGAGTCAAA-AATGAAAA-TGACTG
* * * ** * * * *
5129467 AGAATTAAACCATGAGACAGAAAATGAAAACAAC-AGGGATTAAACAACAAGTTAGAAAATGAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAAAAAATG-AA
* ** * * * *
5129531 AAAGAAT-GGGATTAAACCAGGAGTCAAAAAATAAAAAAGACCG
63 AATG-ATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * ** * * ** * * *
5129574 GGATTAAACCACAAGTCAAAAAATGAAAACAACTAAGCTTAAAAGATGAGTTAGAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * *
5129639 GATCGAGATTAAACCATGAGTCAAAAAATAAAAACGACTG
66 GATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * *
5129679 -GAATTAAATCACAAGTCAAAAAATGAAAATGACCTA-TATTAAACCACGAGTCAAAAAATGAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * ** * * **
5129742 GGTGACCAAGATT-AACCTACAAGTTAGAAAATGAAAA-CAGCCA
64 -ATGATCTAGATTAAACC-ATGAGTCA-AAAATGAAAATGA-CTG
* ** * * * * *
5129785 AGACTAAACCGTGAGTCAGAAAATGAAAATGACATA-GATTAAACAACAAGTCAGAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGAC-TAGGATTAAACCACGAGTCAAAAAATGAAAA
** * *
5129849 TGATC-AGATTAAATTATGAGTAAAAAAAT-AAAACTGATTG
65 TGATCTAGATTAAACCATGAGT-CAAAAATGAAAA-TGACTG
* * * * * * * *
5129889 GGATTAAACAACTAGT--AAAAA--AAAATGATTGGGATTAAACCACAAATCAAAAAATTAAAA-
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * *
5129949 CAACTGGGATTAAACCATAAGTCAAAAAATAAAAATGA-TCG
66 GATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* ** * *
5129990 CA-ATTAAACCATGAGTCAAAAAA-GAAAAACAACT-GAGATTAAACCACCAGTCAGAAAA-GAA
1 -AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATG-A
* ** ** * *
5130051 AAATGA-CAAGGATTAAACCACAAGTCAAAAAATGAAAACAATTA
62 AAATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * *
5130095 AGATTAAACCATGAGTCAAAAAATGTAAATTGACCTA-GATTAAACCACGAGTCAGAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* ** * *
5130159 ATGATCGAGATTAAACCACAAGTTAAAAAATGAAAACGACT-
64 ATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * * ** * ** *
5130200 AGAACTAAACCATGAGTTAAAAAATGAAAATGACCAATATTAAGCCAAAAGTCAGAAAATGAAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * ** *
5130265 AGAT-TGAAATTAAATCACGAGTCAGAAAATGAAAGCGATTG
65 TGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * **
5130306 AGATTAAGCCACGAGTCAAAAAATAAAAATGA-TCAAGATTAAACCATAAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * **
5130370 TGA-CTGAGATTAACCACATG-TTAAAAAATGAAAATGACCA
65 TGATCT-AGATTAAAC-CATGAGTCAAAAATGAAAATGACTG
* * * * *
5130410 AGATTAAACCATGAATCAAAAAATGAAAATGATCATA--ATTAAACCACCTA-TTAGAAAATGAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-C-TAGGATTAAACCA-CGAGTCAAAAAATGAA
* * * *
5130472 AAAGA-CTAGGATTAAACTATGAGTCAAAATATAAAAAATGAATG
63 AATGATCTA-GATTAAACCATGAGTCAAAA-AT-GAAAATGACTG
* ** * * * ** * *
5130516 AGATTAAGCCATAAGTCAAAAAATAAAAATAGTCAAAAAATTAAATCACGAGTCAAAAATTGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAAT-GAC-TAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * *
5130581 ATGA-CAAAGATTAAACCATAAGTC----A--ACAA--CCAG
64 ATGATC-TAGATTAAACCATGAGTCAAAAATGAAAATGACTG
* * * * * * * *
5130614 -GATTAAATCACGAGTTAGAAAATGGAAACGATC-AGAATTAAACCATGACTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* ** * * *
5130677 TGA-CTAGGATTATACCACAAGTGAGAAAATGAAACTGA-TC
65 TGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * *
5130717 AGGATTAAATCACCAGTCAAAAAATAAAAATGA-TCGGGATTAAACCATGAGTCAAAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * * ** * * *
5130781 A-CAACTGAGATTAAATCACCAATCAGAAAAAGAAAATTGA-TC
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* * ** * * * * * *
5130823 AGTGTTAAACTATAAGTTAGAAAATGAAAATGA-TCGGGATTAAATCATGAGTCGAAAAATGAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * * ** *
5130887 A-CAACCAGGATTAAACCACAAGTCAAAAAATAAAAAATGA-TCG
64 ATGATCTA-GATTAAACCATGAGTC-AAAAAT-GAAAATGACT-G
* *
5130930 AGATT-AACTCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCACGAGTCAAAAAATGAAAA
1 AGATTAAAC-CACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAA
* * * * *
5130994 ACGATCAAAATT-AACCATGAGTCAAAAAATGAAAACGATTG
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * ** ** *
5131035 -GAATTAAATCACTAATTAGAGAATAAAAACAACTAAAATTAAACCACGAGTCAAAGAATGAAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * ** *
5131099 CT-A-CAAGAATTAAACCATAACATAAAAAATGAAAACAACAG
65 -TGATCTAG-ATTAAACCATGA-GTCAAAAATGAAAATGACTG
* * * * * * *
5131140 AGATTAAACTATGAGTTAAAAAATGAAAAATGAGC-AAGATTAAATCGA-GAGTTAAAAAATAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGA-CTAGGATTAAA-CCACGAGTCAAAAAATGAA
* * * *
5131203 AATGAT-TGGGATTAAATCAAGAGTCAAAAAATGAAAATGA-TCA
63 AATGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * ** * * ** * ** *
5131246 AAATTAAATCATAAATCAAAAAATAAAAACAACCCA-GATTAAACCTTGAGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * **
5131310 --A--T-GA-TCAACCATGAGTCAGACAAGGGAAATGGTTG
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * *
5131345 AGATTAAGCCATGAGTCAGAAAATGAAAATTACCCA-TATTAAACAATGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * *
5131409 TAATCTAGATTAAATCATGAGTTAGAAAAT-AAAATCGA-TC
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAAT-GACTG
* *
5131449 AGGATTAAACTATC-AGTCAAAAAAAGAAAAATGACT-GTGATTAAACCACGAGTCAAAAAATGA
1 A-GATTAAACCA-CGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGA
* * * *
5131512 AAATGA-CTGGGATTAAACCACGAGTTAGAAAATGAAAACT-ATTG
62 AAATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* ** * * * *
5131556 CGATTAAATAACAAGT-TAGAAA--AAAATGA-TCAGGATTAAACCATGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5131617 CGAT-TAGGATTAAA-C-TGCAAGTCATAAATTAAAATTGACTG
65 TGATCTA-GATTAAACCATG--AGTCAAAAATGAAAA-TGACTG
* * * * * * * *
5131658 GGGTTAAACC-CTAAGTCAAAAAA-AACAAACGACT-GACATTAAACC-CCAGGTCAGAAAATGA
1 AGATTAAACCAC-GAGTCAAAAAATGA-AAATGACTAG-GATTAAACCACGA-GTCAAAAAATGA
** *
5131719 AAATGATC-AGGATTAAACCACAAGTCAAAAAATGAAAACGATCT-
62 AAATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
* * * * * *
5131763 AGATTAAACTGA-TATTCAAAAAATAAAAAATGACTGGGATTAAACTAC-AGGTCAAAAAATGAA
1 AGATTAAAC-CACGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGA-GTCAAAAAATGAA
* * * * * * *
5131826 AATGATCGATATTAAACTATTAATTAGAAAATGAAAATGA-TCA
63 AATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * ***
5131869 AGATTAAATCACAAGTCAAAAAATGAAAACGATTAAACCACTAGGATTAAACCATGAGTTGGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAA--A-T----GACTAGGATTAAACCACGAGTCAAAAA
* * * *
5131934 ATGAAAATGA-CAGAGATTAAATCATGAGTTAAAAAATGAAAATGACTT
58 ATGAAAATGATC-TAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * * * *
5131982 AGATTAAACCACCAATCAGAAAATGAAAATGA-TCAAGATTAAACCATGAGTC-AGAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * ** *
5132045 -CAACAATA-ATTAAACCACCT-A-TTAGAAAAAAAAAACT-AC-C
65 TGATC--TAGATTAAACCA--TGAGTCA-AAAATGAAAA-TGACTG
* * * *
5132085 AGGATTAAACTACGATTCAAAAAATGGAAATGACT-GAGATTAAACCACAAGTCAAAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * * *
5132149 ATGATC-GGAATTAAACTA-CACCTCAACAAATGAAAA-GCAATTG
64 ATGATCTAG-ATTAAACCATGA-GTCAA-AAATGAAAATG--ACTG
* * * * * * * *
5132192 GGATTAAGCCGCGA-TCAAAAAATGAAAATGA-TCAAGATTAAACCACAAGTCAGAGAATGGCAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAAT-GAAA
* *
5132255 ATGATCGAGATTAAACTATGAGTCAAAAAATGAAAATGA-TAG
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * * ** * * * * *
5132297 AAATTAAATCATGAGTCAGAGAATAAAAATGACCAAAATTAAACCAAGTGTCAGAGAATGAAAAC
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** * *
5132362 GATC-AGAATTAAACCACAAGTTAGAAAATGAAAATGACAG
66 GATCTAG-ATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * *
5132402 GGATTAAACTACGTGTTAAAAAAATGAAAAATGAATGGGATTAAACTAAGAGTCAAAAAATGAAA
1 AGATTAAACCACGAG-TCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* * ** * * *
5132467 ATGA-CTAAAATTAAATCACAAGTTAGAAAATGAAAACGA-TCA
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * * * *
5132509 AGATTAAACCACAAGTTAGAAAATGAAAATGAC-AGGGATTAAACTACAAGTTAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5132573 TGA-CTAGGATTAAGCCATGAGTCAAAAATACAAAATTACTG
65 TGATCTA-GATTAAACCATGAGTCAAAAAT-GAAAATGACTG
* ** * * * * ** * * *
5132614 GGATTAAATTATGAGTCAGAGAAATAAAAATGACCAATATTAAATCATGAGTCAAAAAATAAAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
*
5132679 TGATCGAGATTAAACCATGAGTCAAAAAATGAAAATGA-T-
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* ** * * * * * * * * *
5132718 AGGAATTAGATTA-GTAGTTAAAAAATAAAAACGA-TTGAAAATAAACCATGGGTCAGAAAATGA
1 A-G-ATTAAACCACG-AGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGA
* * * * * * *
5132781 AAA-CAACATGGATTAAATCATGAGTCAGAAAATGAAAA-CAATCA
62 AAATGATC-TAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * * * * *
5132825 AGATTAAAACATGAGTTAGAAAATGAAAACGACCTA-AATTAAACAAAGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * *** * * *
5132889 CGATCGAGATAAAAATGTGAGTTAGAAAATGAAAAACGA-TT
65 TGATCTAGATTAAACCATGAGTCA-AAAATG-AAAATGACTG
** * * * * * * * * *
5132930 AGGATTAAACCATAAGTCAGAAAATGAATACGATTGGGTTTAAACCATGAGTTAAGAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
** *
5132995 TGATCGGGATTAAAATCACT-AGTCAAAAATGAAAAATGACT-
65 TGATCTAGATT-AAACCA-TGAGTCAAAAATG-AAAATGACTG
* *
5133036 AGGATTAAACCACGAGTCAAAAAATGAAAATGA-TCGGGATTAAACCACAAGTCAAAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
** * * *
5133100 ACAATCAAGGTTAAACCATGAGTTGAAAATGAAAATGAAAAGAAAAATGACTG
64 ATGATCTAGATTAAACCATGAG-T---CA--AAAAT-----G-AAAATGACTG
* * ** * *
5133153 AGATTAAATCATGAGTCAGAAAAA-GAAAATGACTAAAAATTAAACCAAGAGTCAGAAAATGAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATG-AA
*
5133217 AATGA-CTGAGATTAAACCATGAGTCAAAAAATGAAAATGATTG
63 AATGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * *
5133260 AGATTAAACCACCATTCAGAAAATGAAAATCGAAC-AGG-TTAAATCAAGAGTTAGAAAATGTAA
1 AGATTAAACCACGAGTCAAAAAATGAAAAT-G-ACTAGGATTAAACCACGAGTCAAAAAATGAAA
* ** * *
5133323 ATGA-C-AGGGATTAAACCACGAGTCAGAAAATGAAAAACAATCA
64 ATGATCTA--GATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * * *** * *
5133366 AGATTAAACCACGAGTTAGAAAATAAAAATGA-TTGAGAGTAAATTGCCAGTCTAAAAAA-AAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-AAAAAATGAAA
* * * * * * **
5133429 ATTAATCAAAATTCAAATCACGAAGTCAAAAAATGAAAACGACCA
64 A-TGATCTAGATT-AAACCATG-AGTC-AAAAATGAAAATGACTG
** * * * ** *
5133474 AGATT-AA-CACTGAGTCTGAAAATGAAAATAATTCGGAATTAAACTGGCGAGTCCAAAAATGAA
1 AGATTAAACCAC-GAGTCAAAAAATGAAAATGACTAGG-ATTAAAC-CACGAGTCAAAAAATGAA
**
5133537 ACATGA-CTAGGATTAAATTATGAGTCAGAAAA--AAAACTAGAACT-
63 A-ATGATCTA-GATTAAACCATGAGTCA-AAAATGAAAA-T-G-ACTG
* * * * * * * * *
5133581 AGGATTAAACCACAAATCCAGAAAATGAACATGGGGCCAAGATTAAATCATCGAGTTCAGAAAAT
1 A-GATTAAACCACGAGT-CAAAAAATGAAAAT--GACTAGGATTAAACCA-CGAG-TCAAAAAAT
* * * **
5133646 -CAAATCGAT-TGGGATTAAACCAATG-GAACAGAAAAATGAAAATGACCAA
60 GAAAAT-GATCT-AGATTAAACC-ATGAG-TC--AAAAATGAAAATGA-CTG
* * * * * * * *
5133695 AGGATTAAAATCAATGAGTCAAGATAATGAAAAATCGCCTAGGGTTAAACCATGAGTTAGAAAAT
1 A-GATT-AAA-CCACGAGTCAA-AAAATG-AAAAT-GACTAGGATTAAACCACGAGTCAAAAAAT
* ** *
5133760 AAAAACT-A-CTAAGGATTAAACCCCGAGTCAATAAAAGTGAAAATGACAACCAG
60 GAAAA-TGATCT-A-GATTAAACCATGAGTC-A-AAAA-TGAAAATG---A-CTG
* * * ** * * ** *
5133813 CGATTAAAGCATGAGTCAAAAAAT-AAAACAACTA-TATTAAACCATGAGTTTAGAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * *
5133876 GAT-TAGAATTAAATCACGAGCCAAAAAAATAAAAATGA-TCA
66 GATCTAG-ATTAAACCATGAGTC--AAAAATGAAAATGACT-G
* * * * * * *
5133917 AGATTAAACCATGAGTCAGAAAGTAAAAATGACCT-GGATTAAATCATGA-TAAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * ** *
5133980 CGAAT-GAAATTAAATCACAAGTTAGAAAATGAAAATGA-TCG
65 TG-ATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* ** * * ** * * *
5134021 AGATTAAATCATAAGTTAGAAAACAAAAATGACAAGGATTAAACCACCAGTC-AGAAA--AAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** *
5134083 GATCGGGATTAAACCGTGAGTCAGAAAATGAAAATGA-TCG
66 GATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * ** * * * * ** **
5134123 AAATTAGATCGTGGGTCAGAAAATAAAAATGACCAAAATTAAATTA-GAAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACG-AGTCAAAAAATGAAAA
* * * *
5134187 TAACCAAGATTAAACCACT-AGTCAAAAAATGAAAATGA-TC
65 TGATCTAGATTAAACCA-TGAGTC-AAAAATGAAAATGACTG
* * * * ** * * *
5134227 AGGATTAAACCCCTAGTTAGAAAATGAAAACAACCAGAATTAAACCACCAGTCAAAAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* *** * ** *
5134292 TAATAGGGATTACACCATGAGTCAAAAAATGAAAACAAC-C
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5134332 ATGATGAAATCACCAGTCAAAAAAAGAAAAACGA-TCAGG-TT-AACCATGA--CATAGAAAAT-
1 A-GATTAAACCACGAGTCAAAAAATG-AAAATGACT-AGGATTAAACCACGAGTCA-A-AAAATG
** * ** * *
5134391 AAAATGATCGGGATTAAATCACAAGTTAGAAAATGAAAACGA-TCG
61 AAAATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* ** * * *
5134436 AAATTAAACCATAAGTCAAAGAATGAAAAATGACT-GAGATTAATCTACGAGTC-AAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * * * * * *
5134499 AAGATCGAAATTAAATCATGAGTTAGAGAATAAAAATGATTG
64 ATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5134541 AAATTAAA-CAAGAGTCAAAGAATGAAAATGA-TTGAAATTAAACCATGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
*** * *
5134604 TGATAGGGATTAAACCACGAGTCAAAAAATGAAAAAGACTG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * * * *
5134645 TGATTAAATCATGAGTCAAAAAATAAAAAATGATTAGGATTAAATTATGAGTTAGAGAAATAAAA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCA-AAAAATGAAA
* * ** * *
5134710 ATGA-CTAATATTAAATCACAAGTTAGAAAATAAAAATGA-TCG
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * *
5134752 AGATTAAACCACGAGTTAGAAAATGAAAATGA-TGGGAATTAGATCAAC-AGTCAAAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGG-ATTA-AACCACGAGTCAAAAAATGAAA
* * *
5134815 ATGA-CTGAAAATAAACCA-CAGGTCAAAAAATGAAAATGACATG
64 ATGATCT-AGATTAAACCATGA-GTC-AAAAATGAAAATGAC-TG
* * * * * * * * *
5134858 -GATTAAATCATGAGTTAGAAAATAAAAATGA-TTGAGATTAAAACATGAGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * *
5134921 CGATCCAAATTAAACCAAGAGTCAAAAAATGAAAACGACTG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * * * * * * * * *
5134962 GGATAAAATCATGAGTTAAAACATAAACAATGATTCA-AATTAAACTACAAATTAGAAAATGAAT
1 AGATTAAACCACGAGTCAAAAAATGAA-AATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * * *
5135026 ACGATC-AGGTTTAAACCATGAGTTAAGAAATGAAAATGACCG
64 ATGATCTA-GATTAAACCATGAGTCAA-AAATGAAAATGACTG
* * * *
5135068 AGATTAAATCACAAGTCAAAAAATGAAAAATGA-TCAGGATTAAACAACGAGTTAAAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
** * * **
5135132 ATGATC-AGGATTAAACCACAAGTTAGAAAGTGAAAACAACTCG
64 ATGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * * *
5135175 A-ATTAAACCATGAGTCAGAAAATAAAAATGA-TCGAGATTAAACTAGGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
** * *
5135238 TGAAAAGAAAAATGACTGAGATTAAACCACAAGTCAGAAA--AAAATGACTA
65 T-----G----AT--CT-AGATTAAACCATGAGTCAAAAATGAAAATGACTG
* * * ** * *
5135288 AAATTAAACCAAGAGTCAAAAAATAAAAAACAACT-GAGATTAAATCATGAGTCAAAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * *
5135352 ACGA-CTAGGATTAAACCACT-ATTCTGAAAATGAGAAATGAATG
64 ATGATCTA-GATTAAACCA-TGAGTC-AAAAATGA-AAATGACTG
* * * * * * *
5135395 -GATTAAACTAAGGGTCAAAAAATGTAAATGA-TAGGGATTAAACCATGAGTCAGAAAATGTAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAAAAAATGAAAA
** * * * * *
5135458 CAACCAAGATTAAACCATGAGTTAGAAAATGAAAAGGACCG
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* ** * ** * * *** * *
5135499 AGAGTAAATTACCAACCTAAAAAA-GAAAAATGA-TCGAAATTAAACCGTAAGTTAGAAAATGAA
1 AGATTAAACCACGAGTC-AAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAA
* * ** *
5135562 AA-CAACTAGGATTAAATAATGAGTCTGAAAATGAAAATGATCTG
63 AATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
* * * * * *
5135606 -GATTAAACCACAAGTCTAAAAATAAAAATGACTGGGATTAAACCATGAGTCCAAAAA-G-AAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
*** * * * *
5135668 GATAGGGACTAAACCGTGAGTCAAAAAATGAAAACGGCT-
66 GATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5135707 AGGATTAAACCACAAGTCAGAAAATCAAAATGA-TAGGGATTAAACCATGAATCAAAAGATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAAAAAATGAAA
* * ** * * *
5135771 ATGACCAAGATTAAACCACAAGTTAGATAATGAAAATTGCCT-
64 ATGATCTAGATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* * * *
5135813 AGGGTTAAACCCCGAGTCAAAAAA--ATAAA-GACTATCAGGATTAAACCCCGAGTCATAAAATG
1 A-GATTAAACCACGAGTCAAAAAATGA-AAATGAC--T-AGGATTAAACCACGAGTCAAAAAATG
* *
5135875 AAAATGATC-AGGATTAAAGCATGAGTCAAAAAATGAAAATGATTG
61 AAAATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * *
5135920 GGACTAAACCCCCAG-CAAAAAA--AAAAT-AATCAAAATAAAACCACGAGTCAAAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5135981 TGATC-AGTATTAAATCATAAGTCAAAAAATAAAAATGA-TCG
65 TGATCTAG-ATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* ** * * * * * ***
5136022 AAATTAAATAATGAGTCAAAAACTAAAAATGA-TCGAGATTAAACCACGAGTCAGAAAGCAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * *
5136086 CGA-CCAGGATTAAACCATAAATCAAAAAATAAAAATGAATG
65 TGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * * * * *
5136127 AAATTAAATCATGAGTTAGAAAATGAAAACAAC-CGAGACTAAATCACAAGTCAAAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5136191 TGA-CAATGATTAAACCGTCAATCAAAAAAAGAAAAACGACCG
65 TGATCTA-GATTAAACCATGAGTC-AAAAATG-AAAATGACTG
* * * ** * * * *
5136233 GGATTAAACCATGAGTCAAAAAATGAAAACT-ACCAAAATTAAATCATGGGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * ** *
5136297 CGATCAAAATTAAATCATGAGTCAAAAAATGAAAACAATTG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5136338 GGATTAAACCACTAGTTAGAAAATGAAAATGA-TCAGAATTAAACCACTAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
** * ** ** *
5136402 CAAT-TGGGATTAAACTGTGAGTCAAAAAATGAAAACAACTA
65 TGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** **
5136443 AGATGAAATCACTAGTTAGAAGAAA--AAAATGA-TCAAG-TT-AATTATAAGTCAAAAAATGAA
1 AGATTAAACCACGAGTCA-AA-AAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAA
* * * ** **
5136503 AACGAT-TGGATCTAAATCACAAGTCAAAAAATGAAAATGACCA
63 AATGATCTAGAT-TAAACCATGAGTC-AAAAATGAAAATGACTG
* ** ** *
5136546 AGATTAAACCACGAGTCAAAAAATGAAAAATGA-TCGCGATTAGCCCATAAGTCACAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* *
5136610 ATGA-CTAGAATTAAACCATGAGTCAAAAAATGAAAACTGCCAG
64 ATGATCTAG-ATTAAACCATGAGTC-AAAAATGAAAA-TGACTG
* * * * * * * * * *
5136653 A-ATTAAATCA-GAAGTTAGAGAATAAAAATGA-TCGAAATTAAACCAAGAGTCAAAGAATAAAA
1 AGATTAAACCACG-AGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * *
5136715 ACT-ATC-AGAATTAAACCATGAGTTAGAAAATGAAAA-CAATGG
64 A-TGATCTAG-ATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * ** * *
5136757 GGATTAAACCA-GAGTCAGAAAATGAAAAATGAAC-AGAATTAAACCATTAGTCAGAACATGAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATG-ACTAGGATTAAACCACGAGTCAAAAAATGAAA
* ** * * * *
5136820 ATGATCGAGATTAAACCACAATTTAAAAATGAAAACGATTG
64 ATGATCTAGATTAAACCATGAGTCAAAAATGAAAATGACTG
* * ** * *
5136861 AGATTAAACCATGAGTCAGAAAATGAAAACAACCAGGATTAAACCACGAGTCAAAATATGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
* * * ** * * *
5136926 CGA-CCACAATTAAATTACGAGTCAGAGAAATAAAAAATCACT-
65 TGATCTA-GATTAAACCATGAGTCA-A-AAAT-GAAAATGACTG
** * * * * *
5136968 --ATTAAATGACAAGTCAAAAAATGAAAATGA-TTGAGATTTAACCATGAGTTAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * ** **
5137030 CGA-CGAGAATGAAATTACCAGTCAAAAAATGAAAA-GA-TCG
65 TGATCTAG-ATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* *
5137070 AGATTAAACCACGAGTCAAAAAATGAAAACGAC-ATGGATTAAATCC-TGAGTCAAAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAA-CCACGAGTCAAAAAATGAAA
* * ** **
5137133 ATGA-CTGGGATT-AACCACGAGTTTGAAAATGAAAATGACCC
64 ATGATCT-AGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * ** ** * * *
5137174 AAATAAAACCAAAAGTCAAAAAATGAAAACAAC-CGAGATTAAACCACGAGCCAAAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAAT-GAAA
* * * * *
5137238 ACGAT-TAGGATTGAACCATGAG-CAAAAAATGAATACGACAG
64 ATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * * * *
5137279 GGTTTAAACCACAAGTCAAGAAATGAAAATGA-TTGAGATTAAATTACAAGTTAGAAAATTAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCA-AAAAATGAAA
* ** * * ** **
5137343 ACGATCGGGATTAAAGCATGAGTCAGAAAATGGAAACAACCC
64 ATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * ** * * **
5137385 AGATTAAACCACGAGTTAGAAAATGTAAACAACTGGGATTAAACCATGAGTCAAAAAACAAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* ** * * **
5137450 GATCGAGATTAAACCACCAATTAGAAAAACT-AAAATGACCA
66 GATCTAGATTAAACCA-TGAGT-CAAAAA-TGAAAATGACTG
* * * * ** *
5137491 AGATTAAACCTCAAGTC--AAATTGAAAATGACCAAAATTAAACCAAGAGTCAAAAAATGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
* * *
5137554 TGAT-TGGGATTAAACCATGAGTCAGAAAATGAAAAAGAC-A
65 TGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * *** * * * ** * **
5137594 AGGATTAAATCATC-ATTTTGAAAATAAAAAATGAATGGGATTAAACCAAAAGTCATAAAATCTA
1 A-GATTAAACCA-CGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAA
* * * * * *
5137658 AACGAT-TGGGATTAAACTACGAGTAAGAAAATGAAAATGA-TCA
63 AATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * * * * * * *
5137701 AGATTAAACAATGAGTTAGAAAATAAAAATGA-TCGGGATTAAACCA-TAGTCAAAAAAAGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATG-AAA
** * ** * ** **
5137764 ACAATCGAGATTAAACCACAAGTTAAAAAATGAAAACAACCA
64 ATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * * * * * * *
5137806 AGATGAAACAATGAGTCAGAAAATGAAAAAGACTATGATTAAACCAGGAGTCAGAAAATTAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
*
5137871 GA-CTAAGATTAAACCATAAGTCAGAAAATGAAAATGACTG
66 GATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * ** * * *
5137911 -GAATTAAATCACAAGTCAAAAAATGAAAACAACT-GTGAATAAATCATGAGTCAAAAAATGAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * ** * * *
5137974 ATGA-CATGGATTCAATTACGAG-CTAGAAGATGAAAACGACTG
64 ATGATC-TAGATTAAACCATGAGTC-A-AAAATGAAAATGACTG
* * ** * * * *
5138016 GGATTAAACCAAGAGAT-AAGTAATGAAAACGATCTA-GATTAAATCATGAGTCAAGAAATGAAA
1 AGATTAAACCACGAG-TCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * * * *
5138079 ACGACCGT-GATTAAATCATAAGTCAAAAAATAAAAACGA-TCA
64 ATGATC-TAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* ** * * * * *
5138121 AAATTAAATTAAGAGTAAAAAAATAAGAAAACG-CTCAGAATTAAACCATGAGTCAAAAAAATGA
1 AGATTAAACCACGAGTCAAAAAAT--GAAAATGACT-AGGATTAAACCACGAGTC-AAAAAATGA
* * * ** *
5138185 AAGTGA-CATAGATTAAACAACT-AGTCAAAAAAAGAAAAACAATCG
62 AAATGATC-TAGATTAAACCA-TGAGTC-AAAAATGAAAATGACT-G
* * * **
5138230 AAATTAAACTACGAGTCAAAAAATGAAAATGACCCA-GATTAAACCAC-A-TCCGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5138292 TGA-CAATGATTAAACCATGAGTCAGAAAAAGAAAAATGAC-C
65 TGATCTA-GATTAAACCATGAGTCA-AAAATG-AAAATGACTG
* * * * * * * * *
5138333 AGGATTAAATCATGAGTCAAAAAATAAAAATGAATAAGATTCAATCGCGAGTTAAAAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* ** *
5138398 TGATCGTA-ATTAAACCATAAGTCAAAAAACAAAAATGACTC
65 TGATC-TAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5138439 AGATTAAACCACAAGTCAGAAAATGAAAATGA-TCAAGATTAAACCATGAGTTAGAAAA--AAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* *
5138501 TGATC-ATGATTAAACCATGAGTCAAAAAATTAAAATGA-TCA
65 TGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* ** * * * * * * *
5138542 AAATTAAATTATGCA-TAAAAAAATGAAGGATGATTGGGATTAAACCACGAGTTAGAAAATGAAA
1 AGATTAAACCACG-AGTCAAAAAATGAA-AATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * * *
5138606 ATGATC-AGGAATAACCCATGCGTGAGAAAATGAAAATG-TTC
64 ATGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5138647 AGGATTAAATCATGAGTCAAAAAATGAAAATAACTGGGATTAAACCACTAGTCAAAAAAAGGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTC-AAAAAATGAAA
* * * *
5138712 ATAATCGAGATTAAACCACCG-GTCAGAAAAT-AAAGACGA-TCG
64 ATGATCTAGATTAAACCA-TGAGTCA-AAAATGAAA-ATGACT-G
* * * * *
5138754 ACATTAAGCCACGAGTCAAAAAATGAAAATAACCTA-GATTAAACCATGAGTCAAAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * **
5138818 TAAT-TGTGATTAATCCATGAGTCAAAAAATGAAAATGCCCA
65 TGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * *
5138859 AAATTAAACCAC-ATGTTAGAAAAA-GAAAAATGA-TCGGGATTAAACCATC-AGTTC-AAAATT
1 AGATTAAACCACGA-GTCA-AAAAATG-AAAATGACT-AGGATTAAACCA-CGAG-TCAAAAAAT
* * *
5138919 GAAAATGATCAAGATTAAACCACT-AGCCAAAAA--AAAATGA-TC
60 GAAAATGATCTAGATTAAACCA-TGAGTCAAAAATGAAAATGACTG
* ** * ** * *
5138961 AGGATTAAATCACCCGTCAGAAAATGAAAACCA-TTGAGATTAAACCACAAGTCAAAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * *
5139025 ATGAGCCAGATTAAACCATGAGTCCGAAAATAAAAATGA-TCG
64 ATGATCTAGATTAAACCATGAGT-CAAAAATGAAAATGACT-G
* * * ** *
5139067 AGATTAAACCATGATTCAAAAAA-GAAAAATGA-TCGAGATTAAACCATAAGTCAAAAAATGAAC
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * *
5139130 ATGA-CTGGAATTAAACGATGAGTCAGAAAATGAAAACGATTG
64 ATGATCTAG-ATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * ** * * *
5139172 GGATTAAACCATGAGTCAAAAAATAAAAACAATTAGAATTAAACCATGAGTCAAAAAATGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
** * * * *
5139237 TGA-CTATGATTAAATAACGAGTCAAAGAAATAAAAAAGATTG
65 TGATCTA-GATTAAACCATGAGTC-AA-AAATGAAAATGACTG
* ** * * *
5139279 -GTATTAAA--TC-AGTCAAAAAAACAAAAAAGACT-GGTATTAAATCA-GAAGTCAAAAGATGA
1 AG-ATTAAACCACGAGTC-AAAAAATGAAAATGACTAGG-ATTAAACCACG-AGTCAAAAAATGA
** * * * * *
5139338 AAACAACCGAGATT-AACCTACGATTCAAAAAATAAAAATGA-TG
62 AAATGATCTAGATTAAACC-ATGAGTC-AAAAATGAAAATGACTG
* * * * * * *
5139381 GGATTCAAATCATCGA-TCAAAAAATGAAACTGACCAGGATTAAACCACAAGTCAGAAAATAAAA
1 AGATT-AAACCA-CGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* *
5139445 ATGA-CATGGATTAAATCATGAGTCAAGAAATG-AAATGACTG
64 ATGATC-TAGATTAAACCATGAGTCAA-AAATGAAAATGACTG
* * * * * * * * * *
5139486 GGATTAAATCATGAGTCAGAAAATGAAAACGA-TTGAGATTAATCTATGAGTCAAAAATTGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * *
5139550 TGATCGAGATTAAACCATCAGTCAGAAAA-AAAAATGATTG
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * * * * *
5139590 GGATTAAA-CATGAGTTAGAAAATGAATACT-ACCATGG-CTACACTATGAGTCAAGAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAA-AATGACTA-GGATTAAACCACGAGTCAAAAAATGAAA
* * * * *
5139652 ACGATC-AGGATTAAATCATGAGTTAGAAAATGAATACT-ACCG
64 ATGATCTA-GATTAAACCATGAGTCA-AAAATGAA-AATGACTG
* * * ** * * * *
5139694 GGGTTACATTACGAGTCAAGAAATGAAAATGATCGGGATTAACTAGGATTAAACCATG-GTTAGA
1 AGATTAAACCACGAGTCAAAAAATG-AAA--AT---G----ACTAGGATTAAACCACGAGTCAAA
* *
5139758 AAATGAAAATGACTCTA-ATTAAACCAAGAGTCAGAAAATGAATATGACTG
56 AAATGAAAATGA-TCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * ** * * * *
5139808 AGATTAAACCACAATTCAAAAAATGAAAACAACCCA-GATTAAACCAAGAGTCAGAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * *** * *
5139872 CGA-CTAAAATTAAATTGTGAGTTAGAAAATGAAAAACGAACTG
65 TGATCT-AGATTAAACCATGAGTCA-AAAATG-AAAATG-ACTG
* * * * ** * *
5139915 -GATTGAACCACGAGT-AAGAAAATGAATATAACCAGTG-TT-AATTACAAGTCAAGAAATGAAA
1 AGATTAAACCACGAGTCAA-AAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * * *
5139976 ATGATCGAGATTAAATCAAT-AGTCAAAAAATGAAAA-AAGGTT
64 ATGATCTAGATTAAA-CCATGAGTC-AAAAATGAAAATGA-CTG
* * * * * ** *
5140018 AGGACTAAACCACAAGTCAAAAAATGAAAATGATTAAGATTAATCCTTGAGTCAGAAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
** ** * * * * * * *
5140083 CAATAAAAAATAAACCA-CATGTAAAAAAAGGAAAACGA-TC
65 TGATCTAGATTAAACCATGA-GT-CAAAAATGAAAATGACTG
* * * * ** * *
5140123 AGGATTAAACCACAATTTAGAAAATGAAAATGACCGGGAGTAAACCACCAGTCAAAAAAAT-AAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTC-AAAAAATGAAA
** * * * *
5140187 AACAACCAGGATTAAAACATTAGTCAAAAAATGAAAATGA-TCG
64 ATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * * * *
5140230 GGATTAAACCATGAGTTAGAAAATCAAACA--ACTGGGATTAAATCATGAGTCAGAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5140293 AGA-CTATGATTAAACTACGACTCAGAGAATGAAAAATAATTG
65 TGATCTA-GATTAAACCATGAGTCA-AAAATG-AAAATGACTG
* ** * * * * * *
5140335 TGATTAAATTACAAGT-AAGAGAAATAAAAAAGA-TCAGTATTAAATCAC-A---AATAAA--AA
1 AGATTAAACCACGAGTCAA-A-AAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAA
* * * *
5140392 AATGA-CATGGTTTAAATCACGAGTCAAAAAATGAAAATGACTTG
63 AATGATC-TAGATTAAACCATGAGTC-AAAAATGAAAATGAC-TG
* * ** * * *
5140436 -GATTAAACCAAGAGTCAAAAAATAAAAATGA-TCAAAATTAAATCGCGAGTCAAAAAATTTAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAA-TGAAA
* *
5140499 ATGATC-AGGATTAAACCATGAGTCAAAAAATGAATATGAC-C
64 ATGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * * * *
5140540 AAATTTAAACTATGAGTTAAGAAATGAAAATGA-TCGAGATTAAATCATGAGTTATAAAATTGAA
1 AGA-TTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCA-AAAAATG-A
* **
5140604 AAATGA-CAAAGATTAAACCATGAGTCAGAAAATGAAAATGACCA
62 AAATGATC-TAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * *
5140648 AGATTAAA-CAGCAAGTCAAAAAATGAAAATGACCA--ATTAAACCACGAGTTAGAAAATGAAAA
1 AGATTAAACCA-CGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* ** **
5140710 TGATCGAGATTAAACCACAAGTTTGAAAATGAAAATGACT-
65 TGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* *
5140750 AGGATTAAACCACCAGT----AAA--AAAAT--C-AAGATTAAACCACGAGTCAAAAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAA
* * ** *
5140806 ACGATCAAGATTAAAACCATGAGTCATAAAATGAAAACAATTG
64 ATGATCTAGATT-AAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * *
5140849 GGATTAAACCACTAGTAAAAAAATAAAAAGTGACCAGAATTAAACCACGAATCAGAAAATGAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAAAAAATGAAA-
* * * ** * *
5140914 ACGA-CTGGGATTAAACTAAAAGTCAAAAATAAAAATGA-TCA
64 ATGATCT-AGATTAAACCATGAGTCAAAAATGAAAATGACT-G
* * * * * * *
5140955 AAAATAAACCATCGA-TC-AGAAA--AAAATGATTAGTATTAAACCATGAGTCAAAAAATTAAAA
1 AGATTAAACCA-CGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * **
5141016 TGACCGAGATTAAAACATGA-TCCAAAAATGAAAATGACCA
65 TGATCTAGATTAAACCATGAGT-CAAAAATGAAAATGACTG
* * * * *
5141056 AGATTAAGCCAC-ATGTTAGAAAA-GAAAAATGA-TAGGGATTAAACCACAAGTCAAAAAATAAA
1 AGATTAAACCACGA-GTCAAAAAATG-AAAATGACTA-GGATTAAACCACGAGTCAAAAAATGAA
** * * * *
5141118 AATGATCGGGATTAAACCAGGAGTTAAAAAATGAAAAT-AATC
63 AATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * * * * *
5141160 AGGATTAAACCACCAATC---AAA--AAAATGA-TTGAGATTAAACTATGAGTTAGAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
* * * * * *
5141219 ATGA-CTGTGATTAAATCACGAGTAAAAAAATAAAAAATGATTG
64 ATGATCT-AGATTAAACCATGAGT-CAAAAAT-GAAAATGACTG
* * * * ** * * *
5141262 -GTACTAAATCACAAGTTAAAAAATGAAAACAAGC-ACGATTAAGCCACCTA-TCAGAAAAA-GA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCA-CGAGTCA-AAAAATG-
* ** * * *
5141323 AAAATGATCGAGATTAAACCACAAGTAAAAAAATGAAAACGA-TCA
61 AAAATGATCTAGATTAAACCATGAGT-CAAAAATGAAAATGACT-G
* * * * * * * * * **
5141368 AAATTAAATCACAAGTCAGAAATTGAAAACGACCAAGATTAAATCGTGAGTCAAAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * *
5141433 CGAT-TAGAGTTAAACCCTAAGTCAAAAAAAAGAAAACT-ACTA
66 -GATCTAGA-TTAAACCATGAGTC--AAAAATGAAAA-TGACTG
* * * * * * * * *
5141475 AAATTAAACCCCAAGTTAGAAAATGAAAAGGTCTAGGATTAAACCAAGAGTTAAAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* ** * *
5141540 GATCGAGATTAAACCACCAGTTAGAAA--AAAATGACTG
66 GATCTAGATTAAACCATGAGTCAAAAATGAAAATGACTG
* * * * * * * **
5141577 GGATTAAACCATGAGTCAGAAAATGAATATGACTAAGATTAAACTATGAGTTTAAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * * * *
5141642 GACCAAAATTAAATCACGAGTCAAAAAATCAAAATGAC-C
66 GATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * *
5141681 AGGATTAAACGATGAGTCATAAAATGAAAAATGACTAGGGTTAAGCAACAAGTCAGAAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* * **
5141746 ATGA-CTGGGATTAAACCACGAGTCAAAAAATGAAAAATGACCA
64 ATGATCT-AGATTAAACCATGAGTC-AAAAATG-AAAATGACTG
* * ** * ** ** * * * *
5141789 AAATTAAACCATGAGTTGGAAAAATGACAATGA-TCAAAATTAAATTATGAGTCAGAGAATAAAA
1 AGATTAAACCACGAG-TCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* * * * * *
5141853 ATGAT-TGAAATTAAACTAAGAGTTAGAGAATGAAATTGA-TCG
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACT-G
* * *
5141895 AAATTAAACCACGAGTCAAAAAATGAAAATGA-TAAGGATTAAACCATGAATCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATG-AAA
** * * * * *
5141959 ATGAAT-GGGATTAAACTAGGAGTCAAAAAATGGAAACGACCG
64 ATG-ATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5142001 AGATTAAACCACAAGTCAAAAAATGAAAATGATTGGGATTAAACCATGAGTTAGAAAATGAAAA-
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * * *
5142065 CAACTGAGATTAAACCATAAGTTAGAAAATGAAAAAAGACAG
66 GATCT-AGATTAAACCATGAGTCA-AAAATG-AAAATGACTG
** ** * * * * ** ** *
5142107 AGATTAAACCATAAGTCAGAAAATAAAAAAATAACCAAGATTAAA-TATAAGTCAGAGGAATAAA
1 AGATTAAACCACGAGTCA-AAAA-ATGAAAATGACTAGGATTAAACCACGAGTCA-AAAAATGAA
* * * * * *
5142171 AAAGA-CCAGTATTAAATCATGAGTTAGAAAATAAAAATGA-TC
63 AATGATCTAG-ATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * *
5142213 AGAATTAAACCACGAGTCAAAATAA-CAAAATGA-TAGGAATTAAATCACCCA-TCAAAAAAATG
1 AG-ATTAAACCACGAGTCAAAA-AATGAAAATGACTAGG-ATTAAACCA-CGAGTC-AAAAAATG
* * * * *
5142275 AAAATGACCAAGATTAAACCATAAGTCAAAAAATAAAAAAGAC-G
61 AAAATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
** * * * * ** * * *
5142319 AGGATTAAACCATAAGTCAGAAAATGAAAAATAATTGGGATTAAATTACAAGTCAGAAGAATAAA
1 A-GATTAAACCACGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCA-AAAAATGAA
* * * * * **
5142384 AAAGATCGATATTAAATCATAAGTCAGAAAAT-AAAATTGACCA
63 AATGATCTAGATTAAACCATGAGTCA-AAAATGAAAA-TGACTG
* * * * * * * * *
5142427 AAATTAAACCATGAGTCAGAAAATCAAAATG-GTAGAAATTAAATCACTAGTTAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * *
5142491 -CAACCAGGATTAAACCATGAGTCAGAAAATGAAAATGAGTC
65 TGATCTA-GATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * ** * * * *
5142532 AAATTAAACCACAAGTCAAAAAATGAAAACAACCAGGATTAGACCACCAGTCAAAAAAAGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
* * * *
5142597 CGATC-AGGATTAAACCATGGGCCAGAAATGAAAATGA-TCG
65 TGATCTA-GATTAAACCATGAGTCAAAAATGAAAATGACT-G
* * * * * * *
5142637 AGATTAAACTATGAGTCAAAAAATGAAAATGAC-AAGAATAAACCATGAGTTAGAAAATG-AAA-
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** **
5142699 -ATC---A-TAAGTCA--A---AAAAA-GAAAATGAGAG
66 GATCTAGATTAAACCATGAGTCAAAAATGAAAATGACTG
* * ** ** * * * ** * ** * *
5142727 GGATTAGACCGTGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCAAGAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* *
5142792 GATCGT-GATTAAAACATGAGTCAAAAAATGAAAAACGACTG
66 GATC-TAGATTAAACCATGAGTC-AAAAATG-AAAATGACTG
** * * * * *
5142833 AGATTAAACCATAAGTTAGAAAAATAAAAATGA-TCGCGATTAAACCATGAGTTAAAAAATGAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
** * ** **
5142897 ATGA-CGGGGATTAAACCATTAGTCAAAAAATGAAAACAACCC
64 ATGATC-TAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * *
5142939 AGATTAAACCAC-AGGTCAGAAAATGAAAACGATTAGGATTAAACTACCTA-TCAAAAAAAAGAA
1 AGATTAAACCACGA-GTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTC-AAAAAATG-A
*** ** *
5143002 AAATGATAGGGATTAAACCACAAGTCAAAAAATGAAAAATGAC-C
62 AAATGATCTAGATTAAACCATGAGTC-AAAAATG-AAAATGACTG
* * * * *
5143046 ATGATTAGACCATGAGACAAAAAATGAAAATGACTATGATTAAACCATGAGTCAAAAAATGAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5143111 TAATCCAGATTAAACCATGAGTCAGAAAATGAAAATGAACCAAATTAAACCACAA
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAATG-A-C----T--------G
* * * * * *
5143166 AGATTAAACCACCAATCAAAAAAAGAAAAATGATTAGGATTAAACCATGAGCCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * *
5143231 TGA-CTGAGAATAAATCACGAGTCAAAAAATGAAAAT--C--
65 TGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGACTG
*** * * * * *
5143268 --A-T-----A--AGTCAAAAAATGAAAATGAGAGGGATTAGA--TCGTGTCTTAGATAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTC--AAAAAATGAAA
** * * * * * ** *
5143321 ACAACCAAAATTAAATCACGAGTCAAAAAATGAAAACAAC-A
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ***
5143362 AGGATTAAATCATGAATCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAGGGAAT-AAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAA
* ** ** * * **
5143425 AGCGAT-GGGAATTAAACTGTAAGACAAAACATGAAAATGACCA
64 A-TGATCTAG-ATTAAACCATGAGTCAAAA-ATGAAAATGACTG
* * * * * * * *
5143468 AAATTAAATCATGAGTCAGAAAGAA--AAAA-CAATCGAGATTAAACTATGAGTCAAAAAATGAA
1 AGATTAAACCACGAGTCA-AAA-AATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAA
* *
5143530 AATGATCAAGATTAAACCATGAGTCAAAAAATGAAAACGA-TCG
63 AATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* ** * * * ** * * *
5143573 AGATTAAATCATAAGTCAGAAAATAAAAAATGACCATCATTAAATCATGAGTCAGAGAAATGAAA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCA-AAAAATGAAA
* * *
5143638 ATGATCGATATTAAATCACAT--GTCAAAAAATGAAAACT-ATTG
64 ATGATCTAGATTAAA-C-CATGAGTC-AAAAATGAAAA-TGACTG
* * * * ** ** * *
5143680 AGAATAAATCATGAG-CTAAAAA--CCACCGA--A--ACTAAATCAC-ATGTCAAAAGAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGA-GTCAAAA-AATG-AA
* * * * *
5143737 AATGACCGAAATTAAATCATGAGTTAAAAAATGAAAATGA-TCG
63 AATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACT-G
* *** ** * * * * *
5143780 GGATTAAACTGTGAGTC-AAAAATGAAAATGACCCCGTATTAAACTACGAGTTAGAAAATAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * *
5143844 AGATCGATATTAAACTATGAGTCAGAAAATGAAAACGACCG
65 TGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * *
5143885 AGATTAAACCATGAGTCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAATGAATAC
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* ** * * * * * *
5143950 AATCGGGTTTAAATCGTGAGTTAAGAAATGAAAAT-AATC
66 GATCTAGATTAAACCATGAGTCAA-AAATGAAAATGACTG
* * * * * *
5143989 AGGATTAAATCATGAGTCAAGAAATGAAAACGACT-GAGATTAAATCACGAGTC-AAAAATAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAAT-GAA
* * **
5144052 AATGA-CCAGGATTAAATCACT-AGTCAAAAAATGAAAATGACAA
63 AATGATCTA-GATTAAACCA-TGAGTC-AAAAATGAAAATGACTG
* * * *
5144095 AGATTAAACCATGAGTCAGAAAATGAAAATGA-TCGAGATTAAACCACTAG-CTAGAAAAA-GAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-A-AAAAATG-A
* * * * * *
5144157 AAATGACCGAGATTAAA-C-TAAGTTAGAAAATGAAAACGATTG
62 AAATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * *
5144199 GGATTAAACCATGAGTCAAAAAATGAAAACGA-T-CG---AAA--A--A-T-GAAAAA--AAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** * * ** *
5144251 GATCGGGACTAAACCATGAGTTAGAAAATGAATGTGAC-C
66 GATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * ** * * * ** *
5144290 AGTTTGAATAATGAGTCAAGAAATGAAAATGACTGGGATTAAAGTACGAGTTAAAAAATGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
* * * * * *
5144355 TAACCTGGATTAAACCACGGGACAGAAAAATGAAAAAT-ACT-
65 TGATCTAGATTAAACCATGAGTC--AAAAATG-AAAATGACTG
* ** * * * * *
5144396 ATGATTAAACCATGAGTCTGAAAATGAAAA-CAGGTGGGATTAAA-CATTGAGTCAAAAAAAGAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCA-CGAGTCAAAAAATGAA
* * * * *
5144459 AATGACCTAGATTAAAGCACGAGCCAAAAAATGAAAATGACTA
63 AATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * **
5144502 AGATTAAACCATGAGTCAGAAAATGGAAATGACT-GGATTAAACCACCGA-TCAAAAAAACAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTC-AAAAAATGAAA
* * *
5144565 ATGAACAAGATTAAACCATGAGTCAAAAAATAAAAATGACTG
64 ATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * *
5144607 -GAATTAAACTACGAGTTAGAAAATGAAAAAGAAAAATGATTTGGATTAAACCATGAGTCAGAAA
1 AG-ATTAAACCACGAG-T---CAA--AAAATG-AAAATGACTAGGATTAAACCACGAGTCAAAAA
* * * * * * * * *
5144671 ATGAATACGATC-GGGTGTAAATCACGAGTCGAGAAATAAAAACGA-TCG
58 ATGAAAATGATCTAGAT-TAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * ** *
5144719 CGATTAAAACATGAGTCAAAAAATGAAGAACG-TTCAAGATTAAAATACAAGTCAGAAAAATGAA
1 AGATTAAACCACGAGTCAAAAAATGAA-AATGACT-AGGATTAAACCACGAGTCA-AAAAATGAA
** * *
5144783 AATGATCGCGATTAAACTATGAGTCCAAAAATGAAAATGAC-A
63 AATGATCTAGATTAAACCATGAGT-CAAAAATGAAAATGACTG
** * * *** *
5144825 AGGATTAAACCGTGAGTCAAAAAATGAAAATAACCTA-GATTAGATTGC-ATGTCAGAAAATGAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGA-GTCAAAAAATGAA
** * * ** **
5144888 AACAAT-TGGGATTAAACTACCCA-TCAAGAAAAAAAAATGA-TAG
63 AATGATCT-AGATTAAACCA-TGAGTCAA-AAATGAAAATGACT-G
* * * * *
5144931 GGATTAAACCACGAGTCAAAAGATGAAAATGACTATGATTAAAACATGAGTCAAAAAATGAAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * *
5144996 AATCCT-GATTAAGCCATGAGTCAAAAAATGAAAATGAGC-C
66 GAT-CTAGATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
* * ** * * *
5145036 AGATTAACCCACAAGTCAAAAAATGAAAACAATTAGGATTAAACCACAAGTCAAAAAAAGAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATG-AAAA
* *
5145101 CGATC-AGGATTAAACCATGGGTCAAAAAATGAAAATGA-TCG
65 TGATCTA-GATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * * * * * *
5145142 AGATTAAACTATGAGTCAGAAAATAAAAATCA-TTGAGAATAAACCACGAGTCAGAAAATG-AAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
**
5145205 --ATC---A-T-----A--AGTCAAAAAATGAAAATGAGAG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * ** *
5145233 GGATTAGA-C-CGTGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCAAAAAATGAAA
1 AGATTAAACCACGAGTC--AAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * ** * *
5145296 AT-AACAAGGATTAAATCACAAATCAAAAATGAAAATGAGCAG
64 ATGATCTA-GATTAAACCATGAGTCAAAAATGAAAATGA-CTG
* * * * * * ***
5145338 -GATTAAATCACGAATC-AAAAATGAAAATGACCAGGATTAAATCATGAGTTAGGGAAT-AAAA-
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** ** * **
5145399 GCAAT-GGGAATTAAACTGTAAGTCAAAAAATGAAAATGACCA
66 G--ATCTAG-ATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * ** * *
5145441 AAATTAAATCATGAGTCAGAAAA-CAAAAACAATCGAGATTAAACCACGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
5145505 TGATC-AGGATTAAACCATGAGTCAAAAAATG-AAATCGA-TCG
65 TGATCTA-GATTAAACCATGAGTC-AAAAATGAAAAT-GACT-G
* ** * ** * * * * **
5145546 AGATTAAATCATAAGTCCAAAAATGAAAAACAATCGTCATTAAATCATAAGTCAAAGAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAA-AAATGAAA
* * * * * *
5145611 ATGATCGATATTAAATCA-AATGTGAAAAAATGAAAACT-AATG
64 ATGATCTAGATTAAACCATGA-GT-CAAAAATGAAAA-TGACTG
* * * * * * ** * * * * * * *
5145653 AGAATAAATCATGAGTTAGAAAATCAAAACCA-TCGAAACTAAATCAC-ATGTGAGAGAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGA-GTCAAAAAATG-AA
* * * * *
5145716 AATGATCGAAATTAAATCATGAGTTAAAAAATGAAAATGACCG
63 AATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
*** * * * * * * * * *
5145759 AGATTAAACTGTGAGCCAAAAAATAAAAATGACCAGTATTAAACTACGAGTTAGAAAATAAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
** * * *
5145824 GATGGAGATTAAACCATGAGTTAGAAAATGAAAAGGACCG
66 GATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5145864 AGATTAAACCATGAGTCAAAAAATAAAAAAAGACCAGGATTAAACCACGAGTCAAAAAATGGATA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
** * * * * * * * *
5145929 CAATC-GGGTTCAAATCACGAGTTAAGAAATGAAAA-CAGTC
65 TGATCTAGATT-AAACCATGAGTCAA-AAATGAAAATGACTG
* * * * ** * * * * *
5145969 AGTATTCAATCATGAGTCAAGAAATGAAAACAACT-GAAATTATATCACGAGTTAGAAATAA-AA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCA-AAA-AATGA
* * * *
5146032 AAATG-GCCAGGATTAAATCTC-T-AGTCAAAAAATGAAAACGA-TA
62 AAATGATCTA-GATTAAA-C-CATGAGTC-AAAAATGAAAATGACTG
* * *
5146075 AGGATTAAACCACGAGTTAGAAAATGAAAATGACT-GAGATTAAACCACTAG-CTAGAAAAA-GA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-A-AAAAATG-
* * * * *
5146137 AAAATGACCGAGATTAAACTATGAGTCAGAAAATGAAAACGATTG
61 AAAATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5146182 GGATTAAACCACAAGTCATAAAATG-AAA--AC---GATCAAA--A--AATGAAAAAA--AAAAT
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* * * * * ** *
5146235 AATCAAGACTAAACCACGAGTTAGAAAATGAATGTGAC-C
66 GATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * ** * * * ** *
5146274 AGTTTGAATCTTGAGTCAATAAATGAAAAAGA-TTGAGATTAAAGTACGAGTTAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
** * * * * *
5146338 ACAACATGGATTAAACCATGAGTCTGAAAA-CAAAATCTACTG
65 TGATC-TAGATTAAACCATGAGTC-AAAAATGAAAAT-GACTG
* * ** * * * * *
5146380 TGATTAAACTACGAGTCAAAAAATGAAAACAAGTGGGATT-AAGCATTGATTCATAAAAA--AAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTCA-AAAAATGAAA
* * ** * * *
5146442 ATGACCTAGATTAAAGCACAAGCCAGAAAATGAAAACGACTA
64 ATGATCTAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5146484 AGATTAAACCATGAGTCAGAAAATGGAAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCA-AAAAATGAAAA
*
5146549 CTGA-ATAGAATTAAACCATGAGTCAGAAAATGAAAATGACTG
65 -TGATCTAG-ATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5146591 -GAATTAAACTACGAGTTAGAAAATG-AAA--AC---GATCAAA--A--AAT-GAAAAA--AAAA
1 AG-ATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* *
5146642 TGAT-TGGGATTAAACCATGAGTCAGAAAAATGAAAATGACCG
65 TGATCT-AGATTAAACCATGAGTC--AAAAATGAAAATGACTG
** * ** * * * * *
5146684 TA-ATTAAACCTTGAGTTAAAAAATGAAAACAACCCA-AAGTAAACCACAAGTCAGAAAATGAAA
1 -AGATTAAACCACGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
* ** *
5146747 ATGAT-TAGGATTAAACTACCCA-TCAAAAAAAGAAAAATGA-TAG
64 ATGATCTA-GATTAAACCA-TGAGTC-AAAAATG-AAAATGACT-G
* * * * * * * *
5146790 GGATTAAACCATGAGTCAAAAAATAAAAAACGACCATGA-TAAGACCACAAGTCAAAAAATAAAA
1 AGATTAAACCACGAGTCAAAAAAT-GAAAATGACTAGGATTAA-ACCACGAGTCAAAAAATGAAA
* *
5146854 ATGA-CTATGATTAAACCAAGAGTCAAAAAAAAT-AAAAT-ACTCC
64 ATGATCTA-GATTAAACCATGAGTC---AAAAATGAAAATGACT-G
* * * * * * ** *
5146897 TGATTAAACCATGTGTCAAAAAAATGAGAATGAGCCA-AATTAAACCATAAGTCAAAAAATGTAA
1 AGATTAAACCACGAGTC-AAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAAAAAATGAAA
** * * * ** * * *
5146961 ACAACCAAGATTAAACTACCAGTCGAAAAAAGAAAAACGA-TC
64 ATGATCTAGATTAAACCATGAGTC-AAAAATG-AAAATGACTG
* * * * * * *
5147003 AGGATTAAACCATCG-GTTAGAAAATGAAAATGA-TCGAGATTAAACTATGAGTCAGAAAATAAA
1 A-GATTAAACCA-CGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAA
* ** * *
5147066 AATGA-CTGAGAATAAACCACAAGTTAGAAATTGAAAAT---T-
63 AATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * *
5147105 --A-T-----A--AGTTAAAAAATGAAAATGA-GAGGGATTAGA-C-CGTGTCTTAGATAATGAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTC--AAAAAATGAA
** * * * * * * ** *
5147157 AACAACCAAAATTAAATCACGAGTCAAAAAAAGAAAACAAC-A
63 AATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * ** * **
5147199 ATGATTAAATCACGAATCAGAAAATGAAAATGACCAGGATTAAAATATGAGTC-AGGAAT-AAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* ** * * **
5147262 -GCGT-TAGGAATTAAACTGTAAGTTAAAAAATGAAAATGACCA
65 TG-ATCTA-G-ATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * ** ** * *
5147304 AAATTAAATCATGAGTCAAAAAACAAAAACAAC-CGAGATTAAACCACAAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* **
5147368 TGATCAAGATTAAACTGTGAGTCAAAAAATGAAAATGA-TCG
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACT-G
* * * ** * * * * * ** ** * *
5147409 AGACTAAACGACGAGTTAAAAAATGAATGTAACCA-GTTTGAATCATAAGTCAATTAATAAAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
* ** * **
5147473 GA-CTGGGATTAAAGTATGAGTTAAAAAATGAAAAACAACCTG
66 GATCT-AGATTAAACCATGAG-TCAAAAATG-AAAATGA-CTG
* * * ** * * *
5147515 -GATTAAACCATGAGTTAGAAAACAAAAACT-ACT-GTGATTAAACTACAAGTCAGAAAATGAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAA-TGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
** ** *
5147577 ACAAGT-GGGATT-AAGCATTGAGTCAGAAAA--AAAATGACCT-
64 ATGA-TCTAGATTAAACCA-TGAGTCA-AAAATGAAAATGA-CTG
* * * * * * *
5147617 AGATTAAAGCACGAGCCAAAAAAATGAAAATGACTAAGATTAAACCATGAGTTAGAAAATGGAAA
1 AGATTAAACCACGAGTC-AAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAA
* * ** ** *
5147682 TGA-CCAGGATTAAATCACCAGTCAGAAAACAAAAAATGAACAG
65 TGATCTA-GATTAAACCATGAGTCA-AAAA-TGAAAATG-ACTG
* * * ** * *
5147725 -GATTAAAACCATGGGTCAAAAAATGAAACA--ACCAAAATTAAATCATGAGTCAAAAAATGAAA
1 AGATT-AAACCACGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
* * * * * * * *
5147787 A-AAACAAGGATTAAAATCAACGAATCAAAAATGAAAATTAC-C
64 ATGATCTA-GATT-AAA-CCATGAGTCAAAAATGAAAATGACTG
* * *** * * *** *
5147829 AGGATTAAATCATGAGTCAGGGAAT-AAAAT-AATAGGAATTAAATCGTAAGTCAAAAAATAAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGAGTCAAAAAATGAAA
* * * ** ** *
5147892 ATG-GCTAAAATTAAATCATGAGTCAGAAAACAAAAACAACAG
64 ATGATCT-AGATTAAACCATGAGTCA-AAAATGAAAATGACTG
** **
5147934 AGATTAAACCATAAGTCAAAAAATGAAAATGA-TCAGGATTAAACCGTGAGTCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * ** ** *
5147998 CGATCGAGATTAAATCACAAGTCAGGAAAAATGAAAAACAACCG
65 TGATCTAGATTAAACCATGAGTC---AAAAATG-AAAATGACTG
** * * * * * * * *
5148042 TCATTAAATCATGAGTCAGAGAAATGAAAATGA-TCGATATTAAATCAC-ATGTCAAAAATTAAA
1 AGATTAAACCACGAGTCA-AAAAATGAAAATGACTAG-GATTAAACCACGA-GTCAAAAAATGAA
* * * ** **
5148105 AACT-A-CTTAGAATAAATCATGAGTCAGAAAATCAAAACCACCA
63 AA-TGATC-TAGATTAAACCATGAGTCA-AAAATGAAAATGACTG
* * * * * * * * * * *
5148148 AAACTAAATCAC-ATGTCAGAGAATGAAAAATGAC-CGAAATTAAATCATGAGTTAAAAAATAAA
1 AGATTAAACCACGA-GTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAA
** * *
5148211 AATGATCGGGATTAAACTATGAGTCAAAAAATGAAAATGACCCG
63 AATGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGA-CTG
* * * * * * **** *
5148255 -GATTAAACTACGAGTTAGAAAATAAAAAAGA-TCGAGATTAAATTGTGAATCAAAAAATGAAAA
1 AGATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * *
5148318 CGACCAAGATTAAACCATGAGTCAAAAAATAAAAACGAC-C
65 TGATCTAGATTAAACCATGAGTC-AAAAATGAAAATGACTG
* * * * * * * *
5148358 AGGATTAAACCACGAGTCAAAAAATGAATA-CAATCGAGTTTAAATCACGAGTTAAGAAATGAAA
1 A-GATTAAACCACGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAAAAAATGAAA
** ** * * * * * *
5148422 ACAATCGGGGTTAAATCATGAGTCAAGAAACGACAACGACTA
64 ATGATCTAGATTAAACCATGAGTCAA-AAATGAAAATGACTG
* * * ** * * *
5148464 ATATTAAATCACGAATCAGAAATAA--AAAATGACCGGGATTAAATCACTAGTCAAAAAATAAAA
1 AGATTAAACCACGAGTCA-AAA-AATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAA
** ** * * *
5148527 ATGATAAAGATTAAACCACAAGTTAAAAAATAAAAATGACCG
64 ATGATCTAGATTAAACCATGAG-TCAAAAATGAAAATGACTG
* * * * *
5148569 AGATTAAACCACTAG-CTAGAAAAA-GAAAAATGA-TCGAGATTAAA-CATTGAGTTAGAAAATG
1 AGATTAAACCACGAGTC-A-AAAAATG-AAAATGACTAG-GATTAAACCA-CGAGTCAAAAAATG
* *
5148630 AAAATGAT-TGGGATTAAACCACGAGTCAAAAAATGAAAATGA
61 AAAATGATCT-AGATTAAACCATGAGTC-AAAAATGAAAATGA
5148672 TCGAAAAATG
Statistics
Matches: 17430, Mismatches: 4258, Indels: 3170
0.70 0.17 0.13
Matches are distributed among these distances:
89 11 0.00
90 46 0.00
91 211 0.01
92 94 0.01
93 106 0.01
94 21 0.00
95 112 0.01
96 41 0.00
97 53 0.00
98 79 0.00
99 179 0.01
100 264 0.02
101 259 0.01
102 455 0.03
103 724 0.04
104 1916 0.11
105 5599 0.32
106 4405 0.25
107 1655 0.09
108 355 0.02
109 145 0.01
110 48 0.00
111 41 0.00
112 75 0.00
113 104 0.01
114 119 0.01
115 88 0.01
116 64 0.00
117 53 0.00
118 24 0.00
119 19 0.00
120 64 0.00
121 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (104 bp):
AGATTAAACCACGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAAAAAATGAAAAT
GATCTAGATTAAACCATGAGTCAAAAATGAAAATGACTG
Found at i:5126074 original size:141 final size:140
Alignment explanation
Indices: 5125365--5142665 Score: 2302
Period size: 141 Copynumber: 123.5 Consensus size: 140
5125355 AAATAGCTAG
* * * * * * * *
5125365 GATTAAACCATGAGTTAGAAAATGAAAATGATCAGGATTAAACCACTAGTTAGAAAATAAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
** * * * * *
5125430 ACTATG-ATTAAAT-AGCGAGTCAAAAAATAAAAA-CAACTGGGATTAAACCACCAA-TTAGAAA
66 A-TCGGAATTAAATCA-CAAGTCAAAAAATAAAAATGACCT-AGATTAAACCA-CAAGTAAGAAA
** **
5125491 AAAAAAATTGATTGA
127 ATGAAAA-TGACAGA
* * * * * * * *
5125506 GGTTAAACAATAAGTTAAAAAATGAAAACGATCAAGATTAAATCACGAGCCAAAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * ** *
5125571 ATCGGGATTAAACCACAAGTTAAAAAATGAAAAATGACCAAGATTAAACCATGAGTTAGAAAATG
66 ATCGGAATTAAATCACAAGTCAAAAAAT-AAAAATGACCTAGATTAAACCACAAGTAAGAAAATG
5125636 AAAATGATC-GA
130 AAAATGA-CAGA
* * * * * * * * *
5125647 AATTAAACCATTAGTCAGAGAATGAAAAATGAT-TGAAATTAAATCATGAGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5125711 TGATCGAAATTAAATCACAAGTTAGAGAAGAAAAATGACCT-GAATTAAACCA-AGAGTCAA-AC
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACA-AGT-AAGAA
**
5125773 AATGAAAACTTTCA-A
126 AATGAAAA-TGACAGA
* * * *
5125788 AATTAAACCATGAGACAAAAAATGAAAACCAT-AGGGATTAAACCACCAGTCAAAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCA-GGATTAAACCACGAGTCAAAAAATG-AAAA
* ** ** * * * **
5125852 CGAAT-GGGATTAAA-CTAGGAGTCAGGAAATGAAATTGATCTAGATTAAACCATGAGTCAA-AA
64 CG-ATCGGAATTAAATC-ACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
* * *
5125914 AGTGAAAACGACTGA
126 AATGAAAATGACAGA
* * * *
5125929 GATTAAACCACGAGTCAAAAAATTAAAATGA-CTAGGATTAAATCACGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
**
5125993 GA-CTGGAATTAAATCACAAGTCAAAAAATAAAAACAACCTAGATTAAACCACAAGTAAGAAAAT
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAAT
*
5126057 GAAAGATGACAGG
129 GAAA-ATGACAGA
* * * * * *
5126070 GATTAAACTATGAGTTAGAAAATGAAAACGGTCGGGATTAAACCATGAGTCAAAAAATGAAAAC-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* ** * * * * * *
5126134 AACTAAGATTAAA-C-C-A-T----AAGTTAACA--A-CTAAGATTAAACAATAAGTTAGAAAAT
66 ATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAAAAT
*
5126188 GAAAACGACCA-A
129 GAAAATGA-CAGA
* * * * * ** * * ** *
5126200 GATTAAACCACGAGTCAGATAATGAAAAACAATAAAAAATAAACTATAAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
** * * * * ** * *
5126265 GATCAAAACTAAATCATAAGTCAGAGAATAAAAGCGACCTAAACTAAACCA-AGAGTAA-AAGAA
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACA-AGTAAGAA-AA
*
5126328 TGAAAACT-TCTA-A
128 TGAAAA-TGAC-AGA
* * * * ** *
5126341 AATTAAACCATTAGACAAAAAATGAAAACCAT-AGGGATTAAACCATAAGTCAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCA-GGATTAAACCACGAGTCAAAAAATG-AAAA
* * * * * * * * **
5126405 TGAACAGG-ATTAAACCA-AGAGACAGAAAATAAAATTGACCAAGATTAAATCATGAGTCAA-AA
64 CGATC-GGAATTAAATCACA-AGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
* * *
5126467 AGTGAAAACGACTGA
126 AATGAAAATGACAGA
* * * *
5126482 GATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACAAGTTAGAAAATGAAAA-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * ** *
5126545 GACCAGAATTAAAGCACAAGTCAAAAAATGAAAATGACCTAGATTAAACCATGAGTTAGAAAATG
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATG
5126610 AAAGATGACAG-
130 AAA-ATGACAGA
* * * * * * * **
5126621 GACTTAAGCAATGAGTTAGAAAATG-AAACG-GCCGAAATTAAACCATTAGTC-AAAAATGAAAA
1 GA-TTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* ** * ** * * * *
5126683 TGA-CCCAGATTAAATAATGAGTCAGAAAATGAAAATGA-CTCGGATTAAACCATAAGTCAA-AA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGT-AAGAA
* *
5126745 AAT-AAAATTGATAGG
126 AATGAAAA-TGACAGA
** * * * * * * *
5126760 GA-TAAACCACCAGTCAGAAAAATAAAAATGATCAAGATTAAACTATGAGT-AAAAAATAAAAAT
1 GATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * ** **
5126823 GATCAGG-ATTAAACCACGAGCCAAAAAATGAAAATGATTGTA-ATTAAACCATGAGTCAA-AAA
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGA-CCTAGATTAAACCACAAGT-AAGAAA
* *
5126885 A-AACAAATGATC-GG
127 ATGA-AAATGA-CAGA
* * * ** * * *
5126899 GATTAAACCACT-AGTTAGAAAA-GACAAATGATC-GAGATTAAACTGCTAGTTAGAAAA-GAAA
1 GATTAAACCA-TGAGTCAAAAAATGA-AAACGATCAG-GATTAAACCACGAGTCAAAAAATG-AA
* * * * ** * * * * *
5126960 AATGACCGGTATTAAACCATGAGTTAGAAAATGAAAATGA-CTAGATTAAACCACAAGTCAGCAA
62 AACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAA
*
5127024 ATGAAAACGACCA-A
127 ATGAAAATGA-CAGA
* * * * ** * *
5127038 GATTAAACCGT-AGTCAAAAAATAAAAATCAAT-TGAGATTAAACCAAAAGTTAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-CGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * **
5127101 TGACTAGG-ATTAAACCA-AGAGTCAAAAAATAAAAATGATCGAGATTAAACCACTTGTCAA-AA
64 CGA-TCGGAATTAAATCACA-AGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
* *
5127163 AATGAAAAATGCCCA-T
126 AATG-AAAATG-ACAGA
* *** * * * *
5127179 GATTAAATCACCTGTCAAAAAATGAAAAATGATC-GAGATTAAACCACTACTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * ** ** ** * *
5127243 GGA-C-TATTATTAAATCATGAGTCAAAAAATGGAAACAACCAAGATT-AACCACGAGTCAA-AA
64 CGATCGGA--ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
5127304 AATGAAAATGATCA-A
126 AATGAAAATGA-CAGA
* ** * *
5127319 GATTAAACCATGAG-CTAGAAAATG-AAATTACCAGGATTAAACCACTG-GTCAAAAAATAAAAA
1 GATTAAACCATGAGTC-AAAAAATGAAAACGATCAGGATTAAACCAC-GAGTCAAAAAATGAAAA
* * ** * * * * *
5127381 GGATC-GAGATTAAACCATGAGTCAAAAAATGAAAACGATCGTA-ATTAAACCACCTA-TTAGAA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGA-CCTAGATTAAACCA-CAAGTAAGAA
* * *
5127443 AAAGAAAAATGACTGG
126 AATG-AAAATGACAGA
* * * * * * *
5127459 GATTAAATCACT-AGT-AAGAAAATGAAAATGACCAAGATTAGACCACAAGTCAAAAAGT-AAAA
1 GATTAAACCA-TGAGTCAA-AAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAA
* * ** ** * * *
5127521 --AT--G-A--AAA-CGACCGAGATTAAACCATGAGTCAATGA-CTAGGATTAAATCACGAGTCA
64 CGATCGGAATTAAATC-A-CAAG-TCAAAAAAT-A-AAAATGACCTA-GATTAAACCACAAGTAA
*
5127577 GAAAATGAAAATGCCA-A
123 GAAAATGAAAATGACAGA
* * * * ** * *
5127594 GATTAAACCATGAGTTAGAGAAA-GGAAACGATCGGGATTAAACCATTAG-CTAGAAAATAAAAA
1 GATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGATTAAACCACGAGTC-AAAAAATGAAAA
* ** * * *
5127657 TGA-CCAAGATTAAATCACAAGTTAAAAAATAAAAATGA-CTAGGATTAAACCACTAGTCAGAAA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAA
*
5127720 AAGAAAAATGATC-GA
127 ATG-AAAATGA-CAGA
* * * * * * * * *
5127735 GGTTAAACCATGAGCCAAAAAATGAAAATGA-CTAAGATTACATCATGAGTCGAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** * * **
5127799 GATC--ATATTAGACCATGAGTCAAAAAATAAAAAATGATC-AGGATTAACCCATGAGTCAA-AA
65 GATCGGA-ATTAAATCACAAGTCAAAAAAT-AAAAATGACCTA-GATTAAACCACAAGT-AAGAA
** *
5127860 AATGAAAATGATTGG
126 AATGAAAATGACAGA
* * * * * ** * ** * * *
5127875 GATTAAACCATGAGTTAGAAAATAAAAATGACCAAAATTAAATCATAAGTCAGAGAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCA-AAAAATGAAAAC
* * * * * * * * * **
5127940 GACCGAAATTAAATTA-AGAGTC-AAAATTGAAAA-CAACTGAAATTAAATCATGAG-ACAGAAA
65 GATCGGAATTAAATCACA-AGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTA-AGAAA
**
5128001 ATGAAAACAACAGA
127 ATGAAAATGACAGA
* * * * * * * *
5128015 GATTAAACCATGAGTTAGAAAATGAAAAATGAAT-AAGAATAAACTAGGAGTCAAAAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACG-ATCAGGATTAAACCACGAGTCAAAAAAT-GAAA
* * ** * * *
5128079 ATGATCGGGATTAAA-CTATGAGTCAAAAAA-AGAAAACGA-CTGAGATAAAACCACTAGTCAA-
63 ACGATCGGAATTAAATC-ACAAGTCAAAAAATA-AAAATGACCT-AGATTAAACCACAAGT-AAG
*
5128140 AAAATGAAAATGATTAG-
124 AAAATGAAAATGA-CAGA
* * * * * * *
5128157 GATTAAACTATGAGTCAGAAAATGAAAAC-AACTGGAATTAAATCACAAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGG-ATTAAACCACGAGTCAAAAAATGAAAAC
** * * * * * * *
5128221 GA-CCTAGATTAAA-C-C----CAAAAAAT-GAAA-GACAATTGGGATTAAACTATAGGTTAGAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGAC--CT-AGATTAAACCACAAGTAAGAA
*
5128277 AATGAAAATGGCCAG-
126 AATGAAAAT-GACAGA
* * * **
5128292 GATTAAACCATGAGTCAAAAAATGAAAATGACCCA-AATTAAAACCATAAGT-AAGAAAAT-AAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATT-AAACCACGAGTCAA-AAAATGAAA
* * * * * ** * * *
5128354 ACCCATCGGGATTAAACCACCAA-TCAGAAAAAGAAAGATGACCGGGATTAAACCATAAATAAAA
63 A-CGATCGGAATTAAATCA-CAAGTCA-AAAAATAAAAATGACCTAGATTAAACCACAAGTAAGA
*
5128418 AAATAAAAATGACTAG-
125 AAATGAAAATGAC-AGA
* * * * * ** *
5128434 GATTAAACCACGAGTTAGAAAATAAAAACGATCATGATTAAATTATGAGTCAAAAAA-GAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAAC
* * * * ** *
5128498 GACCAGG-ATTAAACCACTAGT--AAAAA-AAAAATCACCGGGATGAAACCAC-AGTCAA-AAAA
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAA
* ** *
5128557 TGAAAATAATTGT
128 TGAAAATGACAGA
* * * * *
5128570 GATTAAACCATGAGTCAAAAAA-GAAAAATGACCAGGATTAAACCACTAGTTAGAAAAA-AAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCA-AAAAATGAAAA
* ** * * * * * * * ** * *
5128633 C-AACTAAGATTAAACCATAAGTCAGAAAATGAAAATGATCAAAATTAAACCAGGAGTTAGGAAA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAA
5128697 TGAAAATGATCA-A
128 TGAAAATGA-CAGA
* * * * * * * * *
5128710 GATTAAACAACGGGCCGAAAAATGAAAACAATC-GCAATTAAAACCATGAGTTAAAAAA-GAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATT-AAACCACGAGTCAAAAAATG-AAA
* * * * * * * * *
5128773 ATGATCAGG-ATTAAATGACTAGCCAAAAAAGAAAAAAGACCGAGATTAAACTACGAGTCAA-AA
63 ACGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
*
5128836 AATGAAAACGACTAG-
126 AATGAAAATGAC-AGA
* ** * * * * *
5128851 GATTAAACTATGAGTCAGGAAATGAAAACAAT-TGAGATTAAACTACGAGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA-
** *
5128915 CGATCAGG-ATTAAA-C-C-A-T-AAGTAAT-AAAAT-ATC-AGGATTAAACCACAAGT-----A
64 CGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAA
5128966 ATGAAAAT-ATCAG-
127 ATGAAAATGA-CAGA
* * * * * *
5128979 GATTAAACCATGAGTTAAAAATTGAAAACAATCAAGATTAAACCATGACTCAAAAAATGAAAAC-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * ** * * * * * ** ** *
5129043 AGTC-AATATTAAACCATGAGTAAAAAAATGAAAACGA-TTAAAATTAATTCATGAGTTAGAAAA
66 A-TCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAAAA
5129106 TGAAAATGATC-GA
128 TGAAAATGA-CAGA
* * * * * * *
5129119 GATTAAGTCACAT--GTCACAAAATGAAAATGACCAAGATTAAACCACAAGTTC-GAAAATGAAA
1 GATTAA-AC-CATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAG-TCAAAAAATGAAA
* * * ** * * * * *
5129181 AC-AACCGAGATTAAACCATGAGTTAGAAAATGAAAAA-AACTTGGATTAAACCACCAA-TCAA-
63 ACGATCGGA-ATTAAATCACAAGTCAAAAAAT-AAAAATGACCTAGATTAAACCA-CAAGT-AAG
*
5129242 AAAATTAAAATGACCA-A
124 AAAATGAAAATGA-CAGA
** * * ** ** *
5129259 GATTAAACCACAAGTCAGAAAAA--AAAATGACCATAATTAAACCACCTGCTGAAAAAA-GAAAA
1 GATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGATTAAACCACGAG-TCAAAAAATG-AAA
* * * * * * * ** * ***
5129321 ACAACTAGG-ATTAAACCATAAGTCAAAAAGTGAAAATGATCGGGATTAAGCCATGGGTCAA-AA
63 ACGA-TCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
*
5129384 AATAAAAATGACCA-A
126 AATGAAAATGA-CAGA
* ** * * * * * ** ** * *
5129399 AATTAAACCACAAGTTAGAGAATAAAAATGATCAAAATTAAACCAAAAGTCAAATAATGAAAACT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * ** * * * ** *** * *
5129464 ATCAGAATTAAACCATGAGACAGAAAATGAAAACAACAGGGATTAAACAACAAGTTAGAAAATGA
66 ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATG-
* *
5129529 AAAAAGA-ATGG
130 AAAATGACA-GA
* * * * * *
5129540 GATTAAACCAGGAGTCAAAAAATAAAAAAGACCGGGATTAAACCACAAGTCAAAAAATGAAAAC-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * ** ** * * * * * **
5129604 AAC-TAAGCTTAAAAGATGAGTTAGAAAATGAAAATGATCGAGATTAAACCATGAGTCAA-AAAA
66 ATCGGAA--TTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAA
* * *
5129667 TAAAAACGACTG-
128 TGAAAATGACAGA
* ** * * *
5129679 GAATTAAATCACAAGTCAAAAAATGAAAATGACCTA-TATTAAACCACGAGTCAAAAAATGAAAG
1 G-ATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAA-
** ** * * * * * *** *
5129743 GTGA-CCAAGATT-AACCTACAAGTTAGAAAATGAAAACA-G-CCAAGACTAAACCGTGAGTCAG
63 ACGATCGGA-ATTAAATC-ACAAGTCAAAAAAT-AAAA-ATGACCTAGATTAAACCACAAGTAAG
*
5129804 AAAATGAAAATGACATA
124 AAAATGAAAATGACAGA
* ** * * * ** * *
5129821 GATTAAACAACAAGTCAGAAAATAAAAATGATCA-GATTAAATTATGAGTAAAAAAAT-AAAACT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC-
* * * * * *
5129884 GATTGGGATTAAA-CAACTAGT---AAAA-AAAAATGA-TTGGGATTAAACCACAAATCAA-AAA
65 GATCGGAATTAAATC-ACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGT-AAGAAA
* ** * *
5129942 ATTAAAACAACTGG
127 ATGAAAATGACAGA
* * * * *
5129956 GATTAAACCATAAGTCAAAAAATAAAAATGATC-GCAATTAAACCATGAGTCAAAAAA-GAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATG-AAAA
* * * * * * *
5130019 C-AACTGAGATTAAACCACCAGTCAGAAAAGAAAAATGA-CAAGGATTAAACCACAAGTCAA-AA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAA
** *
5130081 AATGAAAACAATTA-A
126 AATGAAAATGA-CAGA
** * *
5130096 GATTAAACCATGAGTCAAAAAATGTAAATTGACCTA-GATTAAACCACGAGTCAGAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * **
5130160 TGATC-GAGATTAAACCACAAGTTAAAAAATGAAAACGA-CTAGAACTAAACCATGAGTTAA-AA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACAAG-TAAGAA
5130222 AATGAAAATGACCA-A
126 AATGAAAATGA-CAGA
* * ** * * * * * * *
5130237 TATTAAGCCAAAAGTCAGAAAATGAAAAAGAT-TGAAATTAAATCACGAGTCAGAAAATGAAAGC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAAC
* ** * * * *
5130301 GAT-TGAGATTAAGCCACGAGTCAAAAAATAAAAATGATCAAGATTAAACCATAAGTCAA-AAAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAA
*
5130364 TGAAAATGACTGA
128 TGAAAATGACAGA
* * * * * * * *
5130377 GATT-AACCA-CATGTTAAAAAATGAAAATGACCAAGATTAAACCATGAATCAAAAAATGAAAAT
1 GATTAAACCATGA-GTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
** * * * * * **
5130440 GATCATAATTAAACCACCTA-TTAGAAAATGAAAAA-GA-CTAGGATTAAACTATGAGTCAA-AA
65 GATCGGAATTAAATCA-CAAGTCAAAAAAT-AAAAATGACCTA-GATTAAACCACAAGT-AAGAA
* *
5130501 TATAAAAAATGA-ATGA
126 AAT-GAAAATGACA-GA
* * ** ** * *
5130517 GATTAAGCCATAAGTCAAAAAAT-AAAAATAGTCAAAAAATTAAATCACGAGTCAAAAATTGAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TC--AGGATTAAACCACGAGTCAAAAAATGAAA
* ** * * * * * *
5130581 ATGA-CAAAGATTAAA-C-C-A-T----AAGTCAACA--ACC-AGGATTAAATCACGAGTTAGAA
63 ACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAA
* *
5130634 AATGGAAACGATCAGA
126 AATGAAAATGA-CAGA
* * * * * *
5130650 -ATTAAACCATGACTCAAAAAATGAAAATGA-CTAGGATTATACCACAAGTGAGAAAATG-AAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** **
5130712 TGATCAGG-ATTAAATCACCAGTCAAAAAATAAAAATGATCGGGATTAAACCATGAGTCAA-AAA
65 -GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAA
** *
5130775 ATGAAAACAACTGA
127 ATGAAAATGACAGA
* ** * * * ** * *
5130789 GATTAAATCACCAATCAGAAAAA-GAAAATTGATCAGTG-TTAAACTATAAGTTAGAAAATGAAA
1 GATTAAACCATGAGTCA-AAAAATGAAAA-CGATCAG-GATTAAACCACGAGTCAAAAAATGAAA
* * ** * * **
5130852 ATGATCGGGATTAAATCATGAGTCGAAAAATGAAAACAACC-AGGATTAAACCACAAGTCAA-AA
63 ACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAA
*
5130915 AATAAAAAATGATC-GA
126 AAT-GAAAATGA-CAGA
* * * *
5130931 GATT-AACTCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCACGAGTCAAAAAATGAAAAA
1 GATTAAAC-CATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAA
** * ** * * * * * * *
5130995 CGATCAAAATT-AACCATGAGTCAAAAAATGAAAACGA-TTGGAATTAAATCACTAA-TTAGAGA
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCAC-AAGTAAGAAA
* **
5131057 ATAAAAACAACTA-A
127 ATGAAAATGAC-AGA
* * * * * ** *
5131071 AATTAAACCACGAGTCAAAGAATGAAAACTA-CAAGAATTAAACCATAACAT-AAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGA-GTCAAAAAATGAAAA
* * ** * * * * *
5131134 C-AACAGAGATTAAA-CTATGAGTTAAAAAATGAAAAATGAGCAAGATTAAATCGA-GAGTTAA-
64 CGATCGGA-ATTAAATC-ACAAGTCAAAAAAT-AAAAATGACCTAGATTAAA-CCACAAG-TAAG
* ** *
5131195 AAAATAAAAATGATTGG
124 AAAATGAAAATGACAGA
* * * ** * ** * *
5131212 GATTAAATCAAGAGTCAAAAAATGAAAATGATCAAAATTAAATCATAAATCAAAAAATAAAAAC-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* ** * *** * * * ** * * *
5131276 AACCCAGATTAAACCTTGAGTCAGAAAATGAAAA--A--T-GA-TCAACCATGAGTCAGACAAGG
66 ATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATG
* ***
5131335 GAAATGGTTGA
130 AAAATGACAGA
* * ** * * * * *
5131346 GATTAAGCCATGAGTCAGAAAATGAAAATTACCCA-TATTAAACAATGAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** * * * *
5131410 AATC-TAGATTAAATCATGAGTTAGAAAAT-AAAATCGATC-AGGATTAAACTATC-AGTCAA-A
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAAT-GACCTA-GATTAAACCA-CAAGT-AAGA
* * *
5131470 AAAAGAAAAATGACTGT
125 AAATG-AAAATGACAGA
* * * * *
5131487 GATTAAACCACGAGTCAAAAAATGAAAATGA-CTGGGATTAAACCACGAGTTAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * **
5131551 TATTGCG-ATTAAATAACAAGT--TAGAA-AAAAATGATC-AGGATTAAACCATGAGTCAA-AAA
65 GATCG-GAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAAA
* *
5131610 ATGAAAACGATTAG-
127 ATGAAAATGA-CAGA
* * * * * * *
5131624 GATTAAA-C-TGCAAGTC-ATAAATTAAAATTGA-CTGGGGTTAAACC-CTAAGTCAAAAAA-AA
1 GATTAAACCATG--AGTCAAAAAATGAAAA-CGATC-AGGATTAAACCAC-GAGTCAAAAAATGA
* * * * * * *
5131683 CAAACGA-CTGACATTAAACCCCAGGTCAGAAAATGAAAATGATC-AGGATTAAACCACAAGTCA
61 -AAACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-A
* *
5131746 A-AAAATGAAAACGATC-TA
122 AGAAAATGAAAATGA-CAGA
* * * * * *
5131764 GATTAAACTGAT-ATTCAAAAAATAAAAAATGA-CTGGGATTAAACTAC-AGGTCAAAAAATGAA
1 GATTAAAC-CATGAGTCAAAAAAT-GAAAACGATC-AGGATTAAACCACGA-GTCAAAAAATGAA
* * * * * * * *
5131826 AATGATC-GATATTAAA-CTATTAA-TTAGAAAATGAAAATGATCAAGATTAAATCACAAGTCAA
62 AACGATCGGA-ATTAAATC-A-CAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AA
* *
5131888 -AAAATGAAAACGATTAAACCACTA
123 GAAAATG-AAA--A-T-GA-CA-GA
*** * * * *
5131912 GGATTAAACCATGAGTTGGAAAATGAAAATGA-CAGAGATTAAATCATGAGTTAAAAAATGAAAA
1 -GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* ** * * * * * ** *
5131976 TGA-CTTAGATTAAACCACCAA-TCAGAAAATGAAAATGATCAAGATTAAACCATGAGTCAG-AA
64 CGATCGGA-ATTAAATCA-CAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAA
**
5132038 ATGAAAACAACA-A
127 ATGAAAATGACAGA
* * * * * * * *
5132051 TAATTAAACCACCT-A-TTAGAAAAA-AAAAACTACCAGGATTAAACTACGATTCAAAAAATGGA
1 -GATTAAACCA--TGAGTCA-AAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAA
* * * * * * * **
5132113 AATGA-CTGAGATTAAACCACAAGTCAAAAAATGAAAATGATC-GGAATTAAACTACACCTCAA-
62 AACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACAAGT-AAG
* *
5132175 CAAATGAAAA-G-CAATTGG
124 AAAATGAAAATGAC-A--GA
* ** * * * * * * *
5132193 GATTAAGCCGCGA-TCAAAAAATGAAAATGATCAAGATTAAACCACAAGTCAGAGAATGGCAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAAT-GAAAAC
** * * ** * *
5132257 GATC-GAGATTAAA-CTATGAGTCAAAAAATGAAAATGA--TAGAAATTAAATCATGAGTCAGAG
65 GATCGGA-ATTAAATC-ACAAGTCAAAAAATAAAAATGACCTAG--ATTAAACCACAAGTAAGAA
*
5132318 AATAAAAATGACCA-A
126 AATGAAAATGA-CAGA
* * * * * * * * * *
5132333 AATTAAACCAAGTGTCAGAGAATGAAAACGATCAGAATTAAACCACAAGTTAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* ** * * * *
5132398 A-CAGGGATTAAA-CTACGTGTTAAAAAAATGAAAAATGA-ATGGGATTAAACTA-AGAGTCAA-
66 ATC-GGAATTAAATC-ACAAG-TCAAAAAAT-AAAAATGACCT-AGATTAAACCACA-AGT-AAG
5132458 AAAATGAAAATGACTA-A
124 AAAATGAAAATGAC-AGA
* * ** * * * * * * *
5132475 AATTAAATCACAAGTTAGAAAATGAAAACGATCAAGATTAAACCACAAGTTAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * * ** *
5132540 A-CAGGGATTAAA-CTACAAGTTAGAAAATGAAAATGA-CTAGGATTAAGCCATGAGTCA-AAAA
66 ATC-GGAATTAAATC-ACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAAA
* * * *
5132601 TACAAAATTACTGG
128 T-GAAAATGACAGA
** * * * * ** * * * *
5132615 GATTAAATTATGAGTCAGAGAAATAAAAATGACCAATATTAAATCATGAGTCAAAAAATAAAAAT
1 GATTAAACCATGAGTCA-AAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* ** * * ** **
5132680 GATC-GAGATTAAACCATGAGTCAAAAAATGAAAATGA--TAGGAATTAGATTAGTAGTTAA-AA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-G-ATTAAACCACAAG-TAAGAA
* * **
5132741 AATAAAAACGATTGA
126 AATGAAAATGACAGA
* * * * * * * *
5132756 AAATAAACCATGGGTCAGAAAATGAAAAC-AACATGGATTAAATCATGAGTCAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCA-GGATTAAACCACGAGTCAAAAAATGAAAAC
* * * ** * * * * * *
5132820 AATC-AAGATTAAAACATGAGTTAGAAAATGAAAACGACCTAAATTAAA-CAAAGAGTCAA-AAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACA-AGT-AAGAAA
*
5132882 ATGAAAACGATC-GA
127 ATGAAAATGA-CAGA
* *** * * * ** * *
5132896 GATAAAAATGTGAGTTAGAAAATGAAAAACGATTAGGATTAAACCATAAGTCAGAAAATGAATAC
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* ** * ** * * * * ** * * *
5132961 GATTGGGTTTAAACCATGAGTTAAGAAATGAAAATGATCGGGATTAAAATCACTAGTCA-AAAAT
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATT-AAACCACAAGTAAGAAAAT
5133025 GAAAAATGACTAG-
129 G-AAAATGAC-AGA
* * * * *
5133038 GATTAAACCACGAGTCAAAAAATGAAAATGATCGGGATTAAACCACAAGTCAAAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* ** * * *
5133103 ATC--AAGGTTAAACCATGAGTTGAAAATGAAAATGAAAAGAAAAATGA-CTGAGATTAAATCAT
66 ATCGGAA--TTAAATCACAAG-T--CAA--AAAAT------AAAAATGACCT-AGATTAAACCAC
* * * *
5133165 GAGTCAGAAAAAGAAAATGACTAAA
117 AAGTAAGAAAATGAAAATGAC-AGA
* * * * * *
5133190 AATTAAACCAAGAGTCAGAAAATGAAAAATGA-CTGAGATTAAACCATGAGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
* * * * * * * * * * *
5133254 TGAT-TGAGATTAAACCACCATTCAGAAAATGAAAATCGAAC-AGGTTAAATCA-AGAGTTAGAA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAAT-GACCTAGATTAAACCACA-AGTAAGAA
* *
5133316 AATGTAAATGACAGG
126 AATGAAAATGACAGA
* * * * * * * *
5133331 GATTAAACCACGAGTCAGAAAATGAAAAACAATCAAGATTAAACCACGAGTTAGAAAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** * * * * * *
5133396 GAT-TGAGAGTAAATTGCCAGTCTAAAAAA-AAAAATTAATCAAAATTCAAATCACGAAGTCAA-
65 GATCGGA-ATTAAATCACAAGTC-AAAAAATAAAAA-TGACCTAGATT-AAACCAC-AAGT-AAG
*
5133458 AAAATGAAAACGACCA-A
124 AAAATGAAAATGA-CAGA
** ** ** *
5133475 GATT-AA-CACTGAGTCTGAAAATGAAAATAATTC-GGAATTAAACTGGCGAGTCCAAAAATGAA
1 GATTAAACCA-TGAGTCAAAAAATGAAAACGA-TCAGG-ATTAAAC-CACGAGTCAAAAAATGAA
* * * ** * * * * *
5133537 ACATGACTAGG-ATTAAATTATGAGTCAGAAAA-AAAACTAGAACTAGGATTAAACCACAAATCC
62 A-ACGA-TCGGAATTAAATCACAAGTCAAAAAATAAAAAT-GACCTA-GATTAAACCACAAGT-A
* *
5133600 AGAAAATGAACATGGGGCCA-A
122 AGAAAATGAAAAT---GACAGA
* * * * ** * *
5133621 GATTAAATCATCGAGTTCAGAAAATCAAATCGATTGGGATTAAACCAATG-GAACAGAAAAATGA
1 GATTAAACCAT-GAG-TCAAAAAATGAAAACGATCAGGATTAAACC-ACGAG-TCA-AAAAATGA
* * * *
5133685 AAATGACCAAAGG-ATTAAAATCA-ATGAGTCAAGATAATGAAAAATCG-CCTAGGGTTAAACCA
61 AAACGATC---GGAATT-AAATCACA--AGTCAA-AAAAT-AAAAAT-GACCTA-GATTAAACCA
** * *
5133747 TGAGTTAGAAAATAAAAACT-ACTA-A
116 CAAGTAAGAAAATGAAAA-TGAC-AGA
** * * * *
5133772 GGATTAAACCCCGAGTCAATAAAAGTGAAAATGACAACCAGCGATTAAAGCATGAGTCAAAAAAT
1 -GATTAAACCATGAGTCAA-AAAA-TG-AAA--ACGATCAG-GATTAAACCACGAGTCAAAAAAT
* * * ** ** * * * * * *
5133837 -AAAAC-AAC-TATATTAAACCATGAGTTTAGAAATGAAAATGA-TTAGAATTAAATCACGAGCC
59 GAAAACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACAAG-T
* *
5133898 AAAAAAATAAAAATGATCA-A
121 AAGAAAATGAAAATGA-CAGA
* * * * * * * * *
5133918 GATTAAACCATGAGTCAGAAAGTAAAAATGACCTGGATTAAATCATGA-TAAAAAAATGAAAACG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * * * * * * **
5133982 AAT-GAAATTAAATCACAAGTTAGAAAATGAAAATGATCGAGATTAAATCATAAGTTAGAAAACA
66 -ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATG
5134046 AAAATGACA-A
130 AAAATGACAGA
** * * * ** * *
5134056 GGATTAAACCACCAGTC-AGAAA--AAAATGATCGGGATTAAACCGTGAGTCAGAAAATGAAAAT
1 -GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * **** * * * ** *
5134118 GATCGAAATTAGATCGTGGGTCAGAAAATAAAAATGACCAAAATTAAATTAGAAGTCAA-AAAAT
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAAT
*
5134182 GAAAATAACCA-A
129 GAAAATGA-CAGA
* * * * *
5134194 GATTAAACCACT-AGTCAAAAAATGAAAATGATCAGGATTAAACCCCTAGTTAGAAAATGAAAAC
1 GATTAAACCA-TGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * * * **
5134258 AACCAGAATTAAACCACCAGTCAAAAAATGAAAAT-A-ATAGGGATTACACCATGAGTCAA-AAA
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA--GATTAAACCACAAGT-AAGAAA
** *
5134320 ATGAAAACAACCA-T
127 ATGAAAATGA-CAGA
* * ** * *
5134334 GATGAAATCACCAGTCAAAAAAAGAAAAACGATCAGG-TT-AACCATGA--CATAGAAAAT-AAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCA-A-AAAATGAAA
* * * * * * * * * * *
5134394 ATGATCGGGATTAAATCACAAGTTAGAAAATGAAAACGATCGAAATTAAACCATAAGTCAA-AGA
63 ACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAA
*
5134458 ATGAAAAATGACTGA
127 ATG-AAAATGACAGA
* * * * * * * * * * * *
5134473 GATTAATCTACGAGTC-AAAAATGAAAAAGATC-GAAATTAAATCATGAGTTAGAGAATAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * **
5134536 GATTGAAATTAAA-CA-AGAGTCAAAGAATGAAAATGA-TTGAAATTAAACCATGAGTCAA-AAA
65 GATCGGAATTAAATCACA-AGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGT-AAGAAA
* *
5134597 ATGAAAATGATAGG
127 ATGAAAATGACAGA
* * * * * *
5134611 GATTAAACCACGAGTCAAAAAATGAAAAAGA-CTGTGATTAAATCATGAGTCAAAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAAT-GAAAA
* * * ** * * * * *
5134675 TGATTAGG-ATTAAATTATGAGTTAGAGAAATAAAAATGA-CTAATATTAAATCACAAGTTAGAA
64 CGA-TCGGAATTAAATCACAAGTCA-AAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAA
*
5134738 AATAAAAATGATC-GA
126 AATGAAAATGA-CAGA
* * * * * * *
5134753 GATTAAACCACGAGTTAGAAAATGAAAATGAT-GGGAATTAGATCAAC-AGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGG-ATTA-AACCACGAGTCAAAAAATGAAAA
* * * * * * * * * ** *
5134816 TGA-CTGAAAATAAACCACAGGTCAAAAAATGAAAATGACATGGATTAAATCATGAGTTAGAAAA
64 CGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAA
* **
5134880 TAAAAATGATTGA
128 TGAAAATGACAGA
* * * *
5134893 GATTAAAACATGAGTCAGAAAATGAAAACGATCCA-AATTAAACCAAGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGAT-CAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** * * * * * * *
5134957 GA-CTGGGATAAAATCATGAGTTAAAACATAAACAATGA-TTCAAATTAAACTACAAATTAGAAA
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAA-AATGACCT-AGATTAAACCACAAGTAAGAAA
* *
5135020 ATGAATACGATCAG-
127 ATGAAAATGA-CAGA
* * * * * * *
5135034 GTTTAAACCATGAGTTAAGAAATGAAAATGA-CCGAGATTAAATCACAAGTCAAAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATG-AAAA
* * * * * *
5135098 TGATCAGG-ATTAAA-CAACGAGTTAAAAAATGAAAATGATC-AGGATTAAACCACAAGTTAGAA
64 CGATC-GGAATTAAATC-ACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAA
* ** *
5135160 AGTGAAAACAACTCGA
126 AATGAAAATGAC-AGA
* * * * *
5135176 -ATTAAACCATGAGTCAGAAAATAAAAATGATC-GAGATTAAACTAGGAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATG---A-
* * * * *
5135239 GAAAAGAAAAATGACTGAGATTAAACCACAAGTC--AGAA-AAAAATGA-CTAAAATTAAACCA-
61 -AAACG----AT--CGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCAC
* ** *
5135299 AGAGTCAA-AAAATAAAAAACAACTGA
117 A-AGT-AAGAAAAT-GAAAATGACAGA
* * * **
5135325 GATTAAATCATGAGTCAAAAAATGAAAACGA-CTAGGATTAAACCACTATTCTGAAAATGAGAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGA-AAA
* * ** ** *
5135389 TGAAT-GG-ATTAAA-CTA-AGGGTCAAAAAATGTAAATGA--TAGGGATTAAACCATGAGTCAG
64 CG-ATCGGAATTAAATC-ACA-AGTCAAAAAATAAAAATGACCTA--GATTAAACCACAAGTAAG
* **
5135448 AAAATGTAAACAACCA-A
124 AAAATGAAAATGA-CAGA
* * * * * ** * **
5135465 GATTAAACCATGAGTTAGAAAATGAAAAGGA-CCGAGAGTAAATTACCAACCTAAAAAA-GAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTC-AAAAAATG-AAA
* * * ** * * * * * ** ** **
5135528 ATGATCGAAATTAAACCGTAAGTTAGAAAATGAAAA-CAACTAGGATTAAATAATGAGTCTGAAA
63 ACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAA
*
5135592 ATGAAAATGATCTG-
127 ATGAAAATGA-CAGA
** * * * * * * *
5135606 GATTAAACCACAAGTCTAAAAATAAAAATGA-CTGGGATTAAACCATGAGTCCAAAAA-G-AAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * *** * * * *
5135668 GATAGGGACTAAACCGTGAGTCAAAAAATGAAAACG-GCTAGGATTAAACCACAAGTCAGAAAAT
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAAAT
* * *
5135732 CAAAATGATAGG
129 GAAAATGACAGA
* * * * * * * * * *
5135744 GATTAAACCATGAATCAAAAGATGAAAATGACCAAGATTAAACCACAAGTTAGATAATGAAAATT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAA-C
* * * * * * * * * * * *
5135809 GCCTAGG-GTTAAACCCCGAGTCAAAAAA-ATAAA-GACTATCAGGATTAAACCCCGAGTCATAA
65 G-ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGAC-CT-A-GATTAAACCACAAGTAAGAA
5135871 AATGAAAATGATCAG-
126 AATGAAAATGA-CAGA
* * ** * * * **
5135886 GATTAAAGCATGAGTCAAAAAATGAAAATGATTGGGACTAAACCCCCAG-CAAAAAA--AAAATA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
** * * * * * *
5135948 ATCAAAATAAAACCACGAGTCAAAAAATAAAAATGATC-AGTATTAAATCATAAGTCAA-AAAAT
66 ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACAAGT-AAGAAAAT
*
5136011 AAAAATGATC-GA
129 GAAAATGA-CAGA
* ** * * * * ***
5136023 AATTAAATAATGAGTCAAAAACTAAAAATGATC-GAGATTAAACCACGAGTCAGAAAGCAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * * ** *
5136087 GACCAGG-ATTAAACCATAAATCAAAAAATAAAAATGA-ATGAAATTAAATCATGAGTTAGAAAA
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAAAA
** *
5136150 TGAAAACAACCGA
128 TGAAAATGACAGA
* * ** * * * * * *
5136163 GACTAAATCACAAGTCAAAAAATAAAAATGA-CAATGATTAAACCGTC-AATCAAAAAAAGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACC-ACGAGTCAAAAAATG-AAA
* * * ** * * * * *** *
5136226 ACGACCGGGATTAAACCATGAGTCAAAAAATGAAAACT-ACCAAAATTAAATCATGGGTCAGAAA
63 ACGATCGGAATTAAATCACAAGTCAAAAAAT-AAAAATGACCTAGATTAAACCACAAGTAAGAAA
*
5136290 ATGAAAACGATCA-A
127 ATGAAAATGA-CAGA
* * * ** * * * *
5136304 AATTAAATCATGAGTCAAAAAATGAAAACAATTGGGATTAAACCACTAGTTAGAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * * ** * ****
5136369 ATCAGAATTAAACCACTAGTCAAAAAATGAAAA-CAATTGGGATTAAACTGTGAGTCAA-AAAAT
66 ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGT-AAGAAAAT
**
5136432 GAAAACAACTA-A
129 GAAAATGAC-AGA
* * * * * ** **
5136444 GATGAAATCACT-AGTTAGAAGAAA--AAAATGATCAAG-TT-AATTATAAGTCAAAAAATGAAA
1 GATTAAACCA-TGAGTCA-AA-AAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAA
* * * *
5136504 ACGATTGG-ATCTAAATCACAAGTCAAAAAATGAAAATGACCAAGATTAAACCACGAGTCAA-AA
63 ACGATCGGAAT-TAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAA
*
5136567 AATGAAAAATGATC-GC
126 AATG-AAAATGA-CAGA
** * * * * *
5136583 GATTAGCCCATAAGTCACAAAATGAAAATGA-CTAGAATTAAACCATGAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * * * * *
5136647 TG-CCAGAATTAAATCAGAAGTTAGAGAATAAAAATGATCGAAATTAAACCA-AGAGTCAA-AGA
65 -GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACA-AGT-AAGAAA
*
5136709 ATAAAAACT-ATCAGA
127 ATGAAAA-TGA-CAGA
* * * ** * *
5136724 -ATTAAACCATGAGTTAGAAAATGAAAACAATGGGGATTAAACCA-GAGTCAGAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAAC
* * * ** * * * * * * *
5136787 GAACAGAATTAAACCATTAGTCAGAACATGAAAATGATCGAGATTAAACCACAATTTA-AAAATG
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATG
* **
5136851 AAAACGATTGA
130 AAAATGACAGA
* * * *
5136862 GATTAAACCATGAGTCAGAAAATGAAAACAACCAGGATTAAACCACGAGTCAAAATATGAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAAC
* ** * * * * **
5136927 GACCACAATTAAATTACGAGTCAGAGAAATAAAAAATCA-CT--ATTAAATGACAAGTCAA-AAA
65 GATCGGAATTAAATCACAAGTCA-AAAAAT-AAAAATGACCTAGATTAAACCACAAGT-AAGAAA
**
5136988 ATGAAAATGATTGA
127 ATGAAAATGACAGA
* * * * ** *
5137002 GATTTAACCATGAGTTAAAAAATGAAAACGA-CGAGAATGAAATTACCAGTCAAAAAATGAAAA-
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * **
5137065 GATC-GAGATTAAACCACGAGTCAAAAAATGAAAACGACATGGATTAAATCC-TGAGTCAA-AAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAA-CCACAAGT-AAGAAA
* *
5137127 ATGAAAATGACTGG
127 ATGAAAATGACAGA
* *** * * * * **
5137141 GATT-AACCACGAGTTTGAAAATGAAAATGACCCA-AATAAAACCAAAAGTCAAAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * * * ** *
5137204 -AACCGAGATTAAACCACGAGCCAAAAAATAAAAAACGA-TTAGGATTGAACCATGAGCAA-AAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAAT-AAAAATGACCTA-GATTAAACCACAAGTAAGAAA
* * *
5137266 ATGAATACGACAGG
127 ATGAAAATGACAGA
* ** * * * ** * * * *
5137280 GTTTAAACCACAAGTCAAGAAATGAAAATGAT-TGAGATTAAATTACAAGTTAGAAAATTAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCA-AAAAATGAAAA
* * ** * ** ** * * *
5137344 CGATCGGGATTAAAGCATGAGTCAGAAAATGGAAACAACCCAGATTAAACCACGAGTTAGAAAAT
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAAT
* ** * *
5137409 GTAAACAACTGG
129 GAAAATGACAGA
** * * * *
5137421 GATTAAACCATGAGTCAAAAAACAAAAATGATC-GAGATTAAACCACCAATTAGAAAAACT-AAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCA-AAAAA-TGAAA
* ** * * * * * *
5137484 ATGA-CCAAGATTAAACCTCAAGTC--AAATTGAAAATGACCAAAATTAAACCA-AGAGTCAA-A
63 ACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACA-AGT-AAGA
** *
5137544 AAATGAAAAATGATTGG
125 AAATG-AAAATGACAGA
* * * * *** *
5137561 GATTAAACCATGAGTCAGAAAATGAAAAAGA-CAAGGATTAAATCATC-ATTTTGAAAATAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCA-CGAGTCAAAAAAT-GAAA
* * * * * ** * * * * *
5137624 ATGAAT-GGGATTAAACCAAAAGTCATAAAATCTAAACGA-TTGGGATTAAACTACGAGTAAGAA
63 ACG-ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAA
5137687 AATGAAAATGATCA-A
126 AATGAAAATGA-CAGA
* * * * * * * *
5137702 GATTAAACAATGAGTTAGAAAATAAAAATGATCGGGATTAAACCA-TAGTCAAAAAAAGAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAAC
* * * * ** * * * ** *
5137766 AATC-GAGATTAAACCACAAGTTAAAAAATGAAAACAACCAAGATGAAACAATGAGTCAGAAAAT
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAAT
* *
5137830 GAAAAAGACTA-T
129 GAAAATGAC-AGA
* * * * * ** * *
5137842 GATTAAACCAGGAGTCAGAAAATTAAAATGA-CTAAGATTAAACCATAAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * * **
5137906 GA-CTGGAATTAAATCACAAGTCAAAAAATGAAAA-CAACTGTGAATAAATCATGAGTCAA-AAA
65 GATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGT-AAGAAA
5137968 ATGAAAATGACATG-
127 ATGAAAATGACA-GA
* ** * * * * * **
5137982 GATTCAATTACGAG-CTAGAAGATGAAAACGA-CTGGGATTAAACCAAGAGAT-AAGTAATGAAA
1 GATTAAACCATGAGTC-AAAAAATGAAAACGATC-AGGATTAAACCACGAG-TCAAAAAATGAAA
* ** * * * * *
5138044 ACGATC-TAGATTAAATCATGAGTCAAGAAATGAAAACGACCGT-GATTAAATCATAAGTCAA-A
63 ACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACC-TAGATTAAACCACAAGT-AAGA
* *
5138106 AAATAAAAACGATCA-A
125 AAATGAAAATGA-CAGA
* ** * * * * *
5138122 AATTAAATTAAGAGTAAAAAAATAAGAAAACGCTCAGAATTAAACCATGAGTCAAAAAAATGAAA
1 GATTAAACCATGAGTCAAAAAAT--GAAAACGATCAGGATTAAACCACGAGTC-AAAAAATGAAA
** ** * * ** * * * * *
5138187 GTGA-CATAGATTAAA-CAACTAGTCAAAAAAAGAAAAACAATCGAAATTAAACTACGAGTCAA-
63 ACGATCGGA-ATTAAATC-ACAAGTC-AAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAG
**
5138249 AAAATGAAAATGACCCA
124 AAAATGAAAATGACAGA
* ** * * *
5138266 GATTAAACCA-CA-TCCGAAAATGAAAATGA-CAATGATTAAACCATGAGTCAGAAAAA-GAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCA-AAAAATG-AAA
* * ** * * * * *
5138327 ATGACCAGG-ATTAAATCATGAGTCAAAAAATAAAAATGA-ATAAGATTCAATCGCGAGTTAA-A
63 ACGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAG-TAAGA
5138389 AAATGAAAATGATC-GTA
125 AAATGAAAATGA-CAG-A
* ** * * * *
5138406 -ATTAAACCATAAGTCAAAAAACAAAAATGACTCA-GATTAAACCACAAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * ** * * * **
5138469 GATC-AAGATTAAACCATGAGT-TAGAAA-AAAAATGATC-ATGATTAAACCATGAGTCAA-AAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAAA
*
5138529 ATTAAAATGATCA-A
127 ATGAAAATGA-CAGA
* ** * * * ** * *
5138543 AATTAAATTATGCA-TAAAAAAATGAAGGATGATTGGGATTAAACCACGAGTTAGAAAATGAAAA
1 GATTAAACCATG-AGTCAAAAAATGAA-AACGATCAGGATTAAACCACGAGTCAAAAAATGAAAA
* ** *** * * * ** * **
5138607 TGATCAGGAA-TAACCCATGCGTGAGAAAATGAAAATGTTC-AGGATTAAATCATGAGTCAA-AA
64 CGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAA
* * *
5138669 AATGAAAATAACTGG
126 AATGAAAATGACAGA
* ** *
5138684 GATTAAACCACT-AGTCAAAAAAAGGAAAATAATC-GAGATTAAACCACCG-GTCAGAAAAT-AA
1 GATTAAACCA-TGAGTC-AAAAAATGAAAACGATCAG-GATTAAACCA-CGAGTCAAAAAATGAA
** * * * **
5138745 AGACGATC-GACATTAAGCCACGAGTCAAAAAATGAAAATAACCTAGATTAAACCATGAGTCAA-
62 A-ACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAG
* * ** *
5138808 AAAATAAAAATAATTGT
124 AAAATGAAAATGACAGA
* * ** ** *
5138825 GATTAATCCATGAGTCAAAAAATGAAAATGCCCAAAATTAAACCAC-ATGTTAGAAAAA-GAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGA-GTCA-AAAAATG-AAA
* * * * * * * * **
5138888 ATGATCGGGATTAAACCATC-AGTTC-AAAATTGAAAATGATCAAGATTAAACCACTAGCCA-AA
63 ACGATCGGAATTAAATCA-CAAG-TCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAA
5138950 AA--AAAATGATCAG-
126 AATGAAAATGA-CAGA
* *** * * * * *
5138963 GATTAAATCACCCGTCAGAAAATGAAAACCAT-TGAGATTAAACCACAAGTCAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAAC
* * * ** ** * * ** *
5139027 GAGC-CAGATTAAACCATGAGTCCGAAAATAAAAATGATCGAGATTAAACCATGATTCAA-AAAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAA
5139090 -GAAAAATGATC-GA
128 TG-AAAATGA-CAGA
* * * * * * *
5139103 GATTAAACCATAAGTCAAAAAATGAACATGA-CTGGAATTAAACGATGAGTCAGAAAATGAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGG-ATTAAACCACGAGTCAAAAAATGAAAAC
* * * ** * ** **
5139167 GATTGGGATTAAACCATGAGTCAAAAAATAAAAA-CAATTAGAATTAAACCATGAGTCAA-AAAA
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAG-ATTAAACCACAAGT-AAGAAAA
*
5139230 TGAAAAATGACTA-T
128 TG-AAAATGAC-AGA
** * * * * * **
5139244 GATTAAATAACGAGTCAAAGAAATAAAAAAGAT-TGGTATTAAA--TC-AGTCAAAAAAACAAAA
1 GATTAAACCATGAGTCAAA-AAATGAAAACGATCAGG-ATTAAACCACGAGTC-AAAAAATGAAA
* * * * * ** * * *
5139305 AAGA-CTGGTATTAAATCAGAAGTCAAAAGATGAAAACAACCGAGATT-AACCTACGATTCAA-A
63 ACGATC-GGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACC-ACAAGT-AAGA
* * *
5139367 AAATAAAAATGA-TGG
125 AAATGAAAATGACAGA
* * * * *
5139382 GATTCAAATCATCGA-TCAAAAAATG-AAACTGACCAGGATTAAACCACAAGTCAGAAAATAAAA
1 GATT-AAACCAT-GAGTCAAAAAATGAAAAC-GATCAGGATTAAACCACGAGTCAAAAAATGAAA
* ** * * * * ** *
5139445 ATGA-CATGG-ATTAAATCATGAGTCAAGAAAT-GAAATGA-CTGGGATTAAATCATGAGTCAGA
63 ACGATC--GGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGA
* **
5139506 AAATGAAAACGATTGA
125 AAATGAAAATGACAGA
* * * *
5139522 GATTAATCTATGAGTCAAAAATTGAAAATGATC-GAGATTAAACCATC-AGTCAGAAAAA--AAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCA-CGAGTCA-AAAAATGAAA
* * * ** * * * * ** * * **
5139583 ATGATTGGGATTAAA-CATGAGTTAGAAAATGAATACT-ACC-ATGGCTACACTATGAGTCAAG-
63 ACGATCGGAATTAAATCACAAGTCAAAAAAT-AAAAATGACCTA-GATTAAACCACAAGT-AAGA
*
5139644 AAATGAAAACGATCAG-
125 AAATGAAAATGA-CAGA
* * * * * * * * * ** * *
5139660 GATTAAATCATGAGTTAGAAAATGAATACTACCGGGGTTACATTACGAGTCAAGAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * * *
5139725 ATCGGGATTAACTAGGATTAAACCATGGTTAGAAAATGAAAATGACTCTA-ATTAAACCA-AGAG
66 ATCGGAATT-A--A--A-T-CA-CA-AGTCAAAAAATAAAAATGAC-CTAGATTAAACCACA-AG
* * *
5139788 TCAGAAAATGAATATGACTGA
120 TAAGAAAATGAAAATGACAGA
** * * * * * *
5139809 GATTAAACCACAATTCAAAAAATGAAAACAACCCA-GATTAAACCAAGAGTCAGAAAATAAAAAC
1 GATTAAACCATGAGTCAAAAAATGAAAACGA-TCAGGATTAAACCACGAGTCAAAAAATGAAAAC
** **** * * * * * * *
5139873 GA-CTAAAATTAAATTGTGAGTTAGAAAATGAAAAACGAACTGGATTGAACCACGAGTAAGAAAA
65 GATC-GGAATTAAATCACAAGTCAAAAAAT-AAAAATGACCTAGATTAAACCACAAGTAAGAAAA
* * *
5139937 TGAATATAACCAGT
128 TGAAAATGA-CAGA
* * * **
5139951 G-TTAATTA-CA--AGTCAAGAAATGAAAATGATC-GAGATTAAATCAATAGTCAAAAAATGAAA
1 GATTAA--ACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATG--A
* * * * * * * * *** *
5140011 AAAGGTTAGG-ACTAAACCACAAGTCAAAAAATGAAAATGA-TTAAGATTAATCCTTGAGTCAGA
61 AAACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGA
** * *
5140074 AAATGAAAACAATAAA
125 AAATGAAAATGACAGA
* * * * * * * * * *
5140090 AAATAAACCA-CATGTAAAAAAAGGAAAACGATCAGGATTAAACCACAATTTAGAAAATGAAAAT
1 GATTAAACCATGA-GTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * ** * **
5140154 GACCGGGAGTAAACCACCAGTCAAAAAAATAAAAACAACC-AGGATTAAAACATTAGTCAA-AAA
65 GATCGGAATTAAATCACAAGTC-AAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAAA
*
5140217 ATGAAAATGATC-GG
127 ATGAAAATGA-CAGA
* * * * * * * * *
5140231 GATTAAACCATGAGTTAGAAAAT-CAAAC-AACTGGGATTAAATCATGAGTCAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
** * * * * ** * **
5140294 GACTATG-ATTAAA-CTACGACTCAGAGAATGAAAAAT-AATTGTGATTAAATTACAAGTAAGAG
65 GA-TCGGAATTAAATC-ACAAGTCAAAAAAT-AAAAATGACCT-AGATTAAACCACAAGTAAGA-
* *
5140356 AAATAAAAAAGATCAG-
125 AAATGAAAATGA-CAGA
* * ** * * * * *
5140372 TATTAAATCACAAATAAAAAAATG---AC-AT--GGTTTAAATCACGAGTCAAAAAATGAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* * * * * * * *
5140431 ACTTGG-ATTAAACCA-AGAGTCAAAAAATAAAAATGATCAAAATTAAATCGCGAGTCAA-AAAA
66 A-TCGGAATTAAATCACA-AGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAAA
*
5140493 TTTAAAATGATCAG-
128 -TGAAAATGA-CAGA
* * * * * * * * *
5140507 GATTAAACCATGAGTCAAAAAATGAATATGACCA-AATTTAAACTATGAGTTAAGAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGA-TTAAACCACGAGTCAAAAAATGAAAAC
** * * ** ** *
5140571 GATC-GAGATTAAATCATGAGTTATAAAATTGAAAAATGACAAAGATTAAACCATGAGTCAGAAA
65 GATCGGA-ATTAAATCACAAGTCA-AAAAAT-AAAAATGACCTAGATTAAACCACAAGTAAGAAA
5140635 ATGAAAATGACCA-A
127 ATGAAAATGA-CAGA
* * * *
5140649 GATTAAA-CA-GCAAGTCAAAAAATGAAAATGACCA--ATTAAACCACGAGTTAGAAAATGAAAA
1 GATTAAACCATG--AGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAA
* * *** * *
5140710 TGATC-GAGATTAAACCACAAGTTTGAAAATGAAAATGA-CTAGGATTAAACCACCAGT----AA
64 CGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGTAAGAAA
5140769 A--AAAAT--CA-A
127 ATGAAAATGACAGA
* * * *
5140778 GATTAAACCACGAGTCAAAAAATGAAAAACGATCAAGATTAAAACCATGAGTCATAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATT-AAACCACGAGTCAAAAAATGAAAA
* * * * * * *
5140843 CAATTGGGATTAAACCACTAGTAAAAAAATAAAAAGTGACC-AGAATTAAACCACGAA-TCAGAA
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAA-TGACCTAG-ATTAAACCAC-AAGTAAGAA
* * *
5140906 AATGAAATACGACTGG
126 AATGAAA-ATGACAGA
* ** * * ** * * *
5140922 GATTAAACTAAAAGTC-AAAAATAAAAATGATCAAAAATAAACCATCGA-TC-AGAAA--AAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCA-CGAGTCAAAAAATGAAAAC
** * * ** * * * *
5140982 GATTAGTATTAAACCATGAGTCAAAAAATTAAAATGACCGAGATTAAA--ACATGATCCA-AAAA
65 GATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAG-T-AAGAAAA
5141044 TGAAAATGACCA-A
128 TGAAAATGA-CAGA
* * * * * * *
5141057 GATTAAGCCA-CATGTTAGAAAA-GAAAAATGAT-AGGGATTAAACCACAAGTCAAAAAATAAAA
1 GATTAAACCATGA-GTCAAAAAATG-AAAACGATCA-GGATTAAACCACGAGTCAAAAAATGAAA
* * * ** * * * * *
5141119 ATGATCGGGATTAAACCAGGAGTTAAAAAATGAAAATAATC-AGGATTAAACCACCAA-T---CA
63 ACGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCA-CAAGTAAGAA
**
5141179 AA--AAAATGATTGA
126 AATGAAAATGACAGA
* * * * * * * *
5141192 GATTAAACTATGAGTTAGAAAATGAAAATGA-CTGTGATTAAATCACGAGTAAAAAAATAAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAAT-GAAAA
* * * * * * ** * * * *
5141256 TGATTGGTACTAAATCACAAGTTAAAAAATGAAAACAAGC-ACGATTAAGCCACCTA-TCAGAAA
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCA-CAAGTAAGAAA
*
5141319 AAGAAAAATGATC-GA
127 ATG-AAAATGA-CAGA
** * ** * * * *
5141334 GATTAAACCACAAGTAAAAAAATGAAAACGATCAAAATTAAATCACAAGTCAGAAATTGAAAACG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
** *** * * *
5141399 A-CCAAGATTAAATCGTGAGTCAAAAAATGAAAATCGA-TTAGAGTTAAACC-CTAAGTCAAAAA
66 ATCGGA-ATTAAATCACAAGTCAAAAAATAAAAAT-GACCTAGA-TTAAACCAC-AAGT-AAGAA
*
5141461 AAAGAAAACT-ACTA-A
126 AATGAAAA-TGAC-AGA
* *** * * * * * *
5141476 AATTAAACCCCAAGTTAGAAAATGAAAA-GGTCTAGGATTAAACCAAGAGTTAAAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATC-AGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * * * ** *
5141540 GATC-GAGATTAAACCACCAGT--TAGAA-AAAAATGA-CTGGGATTAAACCATGAGTCAGAAAA
65 GATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACAAGTAAGAAAA
*
5141600 TGAATATGACTA-A
128 TGAAAATGAC-AGA
* ** * * ** * * *
5141613 GATTAAACTATGAGTTTAAAAATGAAAATGACCAAAATTAAATCACGAGTCAAAAAATCAAAATG
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
* ** * * * * *
5141678 ACCAGG-ATTAAA-CGATGAGTCATAAAATGAAAAATGA-CTAGGGTTAAGCAACAAGTCAGAAA
66 ATC-GGAATTAAATC-ACAAGTCAAAAAAT-AAAAATGACCTA-GATTAAACCACAAGTAAGAAA
* *
5141740 ATGAAAATGACTGG
127 ATGAAAATGACAGA
* * * ** * ** *
5141754 GATTAAACCACGAGTCAAAAAATGAAAAATGACCAAAATTAAACCATGAGTTGGAAAAATGACAA
1 GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAG-TCAAAAAATGAAAA
* ** * ** * * * * * * *
5141819 TGATCAAAATTAAATTATGAGTCAGAGAATAAAAATGA-TTGAAATTAAACTA-AGAGTTAGAGA
64 CGATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCT-AGATTAAACCACA-AGTAAGAAA
*
5141882 ATGAAATTGATC-GA
127 ATGAAAATGA-CAGA
* * * * * * *
5141896 AATTAAACCACGAGTCAAAAAATGAAAATGATAAGGATTAAACCATGAATCAAAAAATGAAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATG-AAAAC
* ** ** * *
5141961 GAAT-GGGATTAAA-CTAGGAGTCAAAAAATGGAAACGACCGAGATTAAACCACAAGTCAA-AAA
65 G-ATCGGAATTAAATC-ACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAA
** *
5142023 ATGAAAATGATTGG
127 ATGAAAATGACAGA
* * * * ** * *
5142037 GATTAAACCATGAGTTAGAAAATGAAAAC-AACTGAGATTAAACCATAAGTTAGAAAATGAAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATG-AAAA
* * * * * * * * * *
5142101 AGA-CAGAGATTAAACCATAAGTCAGAAAATAAAAAAATAACCAAGATTAAA-TATAAGTCAGAG
64 CGATCGGA-ATTAAATCACAAGTCA-AAAA-ATAAAAATGACCTAGATTAAACCACAAGTAAGA-
* * *
5142164 GAATAAAAAAGACCAG-
125 AAATGAAAATGA-CAGA
* * * * * * * * *
5142180 TATTAAATCATGAGTTAGAAAATAAAAATGATCAGAATTAAACCACGAGTCAAAATAA-CAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAA-AATGAAAAC
* * * * *
5142244 GATAGGAATTAAATCACCCA-TCAAAAAAATGAAAATGACCAAGATTAAACCATAAGTCAA-AAA
65 GATCGGAATTAAATCA-CAAGTC-AAAAAATAAAAATGACCTAGATTAAACCACAAGT-AAGAAA
* *
5142307 ATAAAAAAGAC-GA
127 ATGAAAATGACAGA
* * ** ** ** * * *
5142320 GGATTAAACCATAAGTCAGAAAATGAAAAATAATTGGGATTAAATTACAAGTCAGAAGAATAAAA
1 -GATTAAACCATGAGTCAAAAAATG-AAAACGATCAGGATTAAACCACGAGTCA-AAAAATGAAA
* * * * * * ** *
5142385 AAGATC-GATATTAAATCATAAGTCAGAAAATAAAATTGACCAAAATTAAACCATGAGTCAGAAA
63 ACGATCGGA-ATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAA
* **
5142449 ATCAAAATGGTAGA
127 ATGAAAATGACAGA
* * * * * * * *
5142463 AATTAAATCACT-AGTTAAAAAATGAAAACAACCAGGATTAAACCATGAGTCAGAAAATGAAAAT
1 GATTAAACCA-TGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAAC
* * * ** * *
5142527 GAGTC-AAATTAAACCACAAGTCAAAAAATGAAAACAACC-AGGATTAGACCACCAGTCAA-AAA
65 GA-TCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTA-GATTAAACCACAAGT-AAGAAA
* *
5142589 AAGAAAAACGATCAG-
127 ATG-AAAATGA-CAGA
* * * * * *
5142604 GATTAAACCATG-GGCCAGAAATGAAAATGATC-GAGATTAAACTATGAGTCAAAAAATGAAAA
1 GATTAAACCATGAGTCAAAAAATGAAAACGATCAG-GATTAAACCACGAGTCAAAAAATGAAAA
5142666 TGACAAGAAT
Statistics
Matches: 12786, Mismatches: 3228, Indels: 2293
0.70 0.18 0.13
Matches are distributed among these distances:
126 1 0.00
127 9 0.00
128 54 0.00
129 34 0.00
130 62 0.00
131 68 0.01
132 47 0.00
133 100 0.01
134 162 0.01
135 296 0.02
136 330 0.03
137 457 0.04
138 812 0.06
139 1390 0.11
140 3147 0.25
141 3383 0.26
142 1301 0.10
143 313 0.02
144 138 0.01
145 58 0.00
146 42 0.00
147 20 0.00
148 118 0.01
149 152 0.01
150 74 0.01
151 39 0.00
152 67 0.01
153 65 0.01
154 23 0.00
155 15 0.00
156 9 0.00
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.20
Consensus pattern (140 bp):
GATTAAACCATGAGTCAAAAAATGAAAACGATCAGGATTAAACCACGAGTCAAAAAATGAAAACG
ATCGGAATTAAATCACAAGTCAAAAAATAAAAATGACCTAGATTAAACCACAAGTAAGAAAATGA
AAATGACAGA
Found at i:5126165 original size:25 final size:25
Alignment explanation
Indices: 5126131--5126181 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
5126121 AAAAAATGAA
*
5126131 AACAACTAAGATTAAACCATAAGTT
1 AACAACTAAGATTAAACAATAAGTT
5126156 AACAACTAAGATTAAACAATAAGTT
1 AACAACTAAGATTAAACAATAAGTT
5126181 A
1 A
5126182 GAAAATGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.24
Consensus pattern (25 bp):
AACAACTAAGATTAAACAATAAGTT
Found at i:5126178 original size:13 final size:14
Alignment explanation
Indices: 5126130--5126178 Score: 61
Period size: 13 Copynumber: 3.8 Consensus size: 14
5126120 CAAAAAATGA
5126130 AAACAACTAAGATT
1 AAACAACTAAGATT
*
5126144 AAACCA-TAAG-TT
1 AAACAACTAAGATT
5126156 -AACAACTAAGATT
1 AAACAACTAAGATT
5126169 AAACAA-TAAG
1 AAACAACTAAG
5126179 TTAGAAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
11 4 0.13
12 6 0.20
13 10 0.33
14 10 0.33
ACGTcount: A:0.57, C:0.14, G:0.08, T:0.20
Consensus pattern (14 bp):
AAACAACTAAGATT
Found at i:5126543 original size:70 final size:70
Alignment explanation
Indices: 5126342--5148671 Score: 5672
Period size: 70 Copynumber: 319.4 Consensus size: 70
5126332 AACTTCTAAA
* * ** **
5126342 ATTAAACCATTAGACAAAAAATGAAAACCA-TAGGGATTAAACCATAAGTCAGAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATG-AAAAT
*
5126406 GAACAG-G
64 G-ACTGAG
* * * * * * * *
5126413 ATTAAACCAAGAGACAGAAAAT-AAAATTGACCAAGATTAAATCATGAGTCA-AAAAGTGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAGAAAA-TGAAAAT
5126476 GACTGAG
64 GACTGAG
* *
5126483 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACAAGTTAGAAAATGAAAA-GA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5126547 C-CAG
66 CTGAG
* ** * *
5126551 AATTAAAGCACAAGTCAAAAAATGAAAATGACCTA-GATTAAACCATGAGTTAGAAAATGAAAGA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAA-A
*
5126615 TGACAG-G
63 TGACTGAG
* * * * ** * * * **
5126622 ACTTAAGCAATGAGTTAGAAAATGAAACGGCCGA-AATTAAACCATTAGTCA-AAAATGAAAATG
1 A-TTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
**
5126685 ACCCAG
65 ACTGAG
** * * ** *
5126691 ATTAAATAATGAGTCAGAAAATGAAAATGACTCGGATTAAACCATAAGTCAAAAAAT-AAAATTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAA-TG
*
5126755 A-TAGGG
65 ACT-GAG
** * * * * * *
5126761 A-TAAACCACCAGTCAGAAAAATAAAAATGA-TCAAGATTAAACTATGAGT-AAAAAATAAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5126823 GA-TCAGG
64 GACTGA-G
* * * * * **
5126830 ATTAAACCACGAGCCAAAAAATGAAAATGA-TTGTAATTAAACCATGAGTCA-AAAAAAACAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGA-AAAT
*
5126893 GA-TCGGG
64 GACT-GAG
* * * ** * *
5126900 ATTAAACCACT-AGTTAGAAAA-GACAAATGA-TCGAGATTAAACTGCTAGTTAGAAAA-GAAAA
1 ATTAAACCA-TGAGTCAAAAAATGA-AAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAA
*
5126961 ATGACCG-G
62 ATGACTGAG
* * * * *
5126969 TATTAAACCATGAGTTAGAAAATGAAAATGACTA-GATTAAACCACAAGTCAGCAAATGAAAACG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
**
5127033 ACCAAG
65 ACTGAG
* * * * * ** *
5127039 ATTAAACCGT-AGTCAAAAAATAAAAATCAATTGAGATTAAACCAAAAGTTAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
5127103 ACT-AGG
65 ACTGA-G
* * * ** *
5127109 ATTAAACCAAGAGTCAAAAAATAAAAATGA-TCGAGATTAAACCACTTGTCAAAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
**
5127173 G-CCCATG
64 GACTGA-G
* *** * * * *
5127180 ATTAAATCACCTGTCAAAAAATGAAAAATGA-TCGAGATTAAACCACTACTCAGAAAATGAAAAG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
*
5127244 GACT-ATT
64 GACTGA-G
* * ** * * *
5127251 ATTAAATCATGAGTCAAAAAATGGAAACAACCAAGATT-AACCACGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5127315 -TCAAG
66 CT-GAG
* * * * * *
5127320 ATTAAACCATGAG-CTAGAAAATG-AAATTACCAGGATTAAACCACTG-GTCAAAAAATAAAAAG
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACTAGGATTAAACCAC-GAGTCAGAAAATGAAAAT
5127382 GA-TCGAG
64 GACT-GAG
* * * *
5127389 ATTAAACCATGAGTCAAAAAATGAAAACGATCGTA--ATTAAACCACCTA-TTAGAAAAAGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-C-TAGGATTAAACCA-CGAGTCAGAAAATG-AAA
*
5127451 ATGACTGGG
62 ATGACTGAG
* * * * *
5127460 ATTAAATCACT-AGT-AAGAAAATGAAAATGACCAAGATTAGACCACAAGTCAAAAAGTAAAAAT
1 ATTAAACCA-TGAGTCAA-AAAATGAAAATGACTAGGATTAAACCACGAGTC----AG--AAAAT
* *
5127523 GAAAACGACCGAG
58 GAAAATGACTGAG
*
5127536 ATTAAACCATGAGTC----------AATGACTAGGATTAAATCACGAGTCAGAAAATGAAAATG-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
**
5127590 CCAAG
66 CTGAG
* * * * * ** *
5127595 ATTAAACCATGAGTTAGAGAAA-GGAAACGA-TCGGGATTAAACCATTAG-CTAGAAAATAAAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACT-AGGATTAAACCACGAGTC-AGAAAATGAAAA
**
5127657 TGACCAAG
63 TGACTGAG
* ** * * * *
5127665 ATTAAATCACAAGTTAAAAAATAAAAATGACTAGGATTAAACCACTAGTCAGAAAAAGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
5127730 A-TCGAG
65 ACT-GAG
* * * * * *
5127736 GTTAAACCATGAGCCAAAAAATGAAAATGACTAAGATTACATCATGAGTC-GAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAG-AAAATGAAAATG
* *
5127800 A-TCAT
65 ACTGAG
* * * * *
5127805 ATTAGACCATGAGTCAAAAAATAAAAAATGA-TCAGGATTAACCCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5127869 GATTGGG
64 GACTGAG
* * * * ** * ** *
5127876 ATTAAACCATGAGTTAGAAAATAAAAATGACCAAAATTAAATCATAAGTCAGAGAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAATG
* *
5127941 ACCGAA
65 ACTGAG
** * * ** * * * * **
5127947 ATTAAATTAAGAGTC-AAAATTGAAAACAACT-GAAATTAAATCATGAGACAGAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5128010 ACAGAG
65 ACTGAG
* * * * * * * * *
5128016 ATTAAACCATGAGTTAGAAAATGAAAAATGAATAAGAATAAACTAGGAGTCAAAAAATAAAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GAAAAT
*
5128081 GA-TCGGG
64 GACT-GAG
* * * * * *
5128088 ATTAAACTATGAGTCAAAAAAAGAAAACGACT-GAGATAAAACCACTAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5128152 A-TTAGG
65 ACTGA-G
* * ** * * *
5128158 ATTAAACTATGAGTCAGAAAATGAAAACAACT-GGAATTAAATCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGAGTCAGAAAATGAAAATG
5128222 ACCT-AG
65 A-CTGAG
** * * * * *
5128228 ATTAAACC------CAAAAAATGAAAGACAATTGGGATTAAACTA-TAGGTTAGAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGA-GTCAGAAAATGAAAAT
* *
5128286 GGC-CAGG
64 GACTGA-G
* * ** *
5128293 ATTAAACCATGAGTCAAAAAATGAAAATGACCCA-AATTAAAACCATAAGTAAGAAAAT-AAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATT-AAACCACGAGTCAGAAAATGAAAAT
** *
5128355 CCCATCGGG
64 GAC-T-GAG
** * ** ** * * * *
5128364 ATTAAACCACCAATCAGAAAAA-GAAAGATGACCGGGATTAAACCATAAATAAAAAAATAAAAAT
1 ATTAAACCATGAGTCA-AAAAATGAAA-ATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
5128428 GACT-AGG
64 GACTGA-G
* * * * * * ** * * *
5128435 ATTAAACCACGAGTTAGAAAATAAAAACGA-TCATGATTAAATTATGAGTCA-AAAAAGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATG-AAAAT
*
5128498 GAC-CAGG
64 GACTGA-G
* ** * * *
5128505 ATTAAACCACT-AGT-AAAAAA--AAAATCACCGGGATGAAACCAC-AGTCAAAAAATGAAAATA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5128565 ATTGTG
65 ACTGAG
* * * ** **
5128571 ATTAAACCATGAGTCAAAAAA-GAAAAATGACCAGGATTAAACCACTAGTTAGAAAAAAAAAACA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5128635 ACTAAG
65 ACTGAG
* * ** * * *
5128641 ATTAAACCATAAGTCAGAAAATGAAAATGA-TCAAAATTAAACCAGGAGTTAGGAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5128705 A-TCAAG
65 ACT-GAG
* * * * * * * * * * * *
5128711 ATTAAACAACGGGCCGAAAAATGAAAA-CAATCGCAATTAAAACCATGAGTTA-AAAAAGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATT-AAACCACGAGTCAGAAAATG-AAAA
*
5128774 TGA-TCAGG
63 TGACTGA-G
** * * * * *
5128782 ATTAAATGACT-AGCCAAAAAA-GAAAAAAGAC-CGAGATTAAACTACGAGTCAAAAAATGAAAA
1 ATTAAACCA-TGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAA
*
5128844 CGACT-AGG
63 TGACTGA-G
* ** * * * * *
5128852 ATTAAACTATGAGTCAGGAAATGAAAA-CAATTGAGATTAAACTACGAGTTAGAAAATGAAAATC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT-
*
5128916 GA-TCAGG
64 GACTGA-G
* *
5128923 ATTAAACCATAAGT-----AAT-AAAAT-A-TCAGGATTAAACCAC-A---AG-TAATGAAAAT-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5128974 A-TCAGG
65 ACTGA-G
* * * * * * * * *
5128980 ATTAAACCATGAGTTAAAAATTGAAAA-CAATCAAGATTAAACCATGACTCAAAAAATGAAAA-C
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
* * *
5129043 AGTCAAT
65 ACT-GAG
* * * ** ** * *
5129050 ATTAAACCATGAGTAAAAAAATGAAAACGATTAAAATTAATTCATGAGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5129115 -TCGAG
66 CT-GAG
* * * * *
5129120 ATTAAGTCACAT--GTCACAAAATGAAAATGACCAAGATTAAACCACAAGTTC-GAAAATGAAAA
1 ATTAA-AC-CATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAG-TCAGAAAATGAAAA
** *
5129182 CAACCGAG
63 TGACTGAG
* * ** * * * * *
5129190 ATTAAACCATGAGTTAGAAAATGAAAAAAACTTGGATTAAACCACCAATCAAAAAATTAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
**
5129255 CCAAG
66 CTGAG
** * ** ** * *
5129260 ATTAAACCACAAGTCAGAAAAA--AAAATGACCATAATTAAACCACCTG-CTGAAAAAAGAAAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACTAGGATTAAACCACGAGTCAG-AAAATG-AAAA
**
5129322 CAACT-AGG
63 TGACTGA-G
* * * * * * * *
5129330 ATTAAACCATAAGTCAAAAAGTGAAAATGA-TCGGGATTAAGCCATGGGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
** *
5129394 ACCAAA
65 ACTGAG
** * * * * ** **
5129400 ATTAAACCACAAGTTAGAGAATAAAAATGA-TCAAAATTAAACCAAAAGTCA-AATAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAA-AATGAAAA-
*
5129463 T-A-TCAG
63 TGACTGAG
* * ** * * *
5129469 AATTAAACCATGAGACAGAAAATGAAAACAAC-AGGGATTAAACAACAAGTTAGAAAATGAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATG-AAAA
* * *
5129533 AGAATGGG
63 TGACTGAG
* * * ** * * **
5129541 ATTAAACCAGGAGTCAAAAAATAAAAAAGACCGGGATTAAACCACAAGTCAAAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5129606 CTAAG
66 CTGAG
* ** * * * * * * *
5129611 CTTAAAAGATGAGTTAGAAAATGAAAATGA-TCGAGATTAAACCATGAGTCAAAAAATAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
5129675 ACTG-G
65 ACTGAG
* ** * * *
5129680 AATTAAATCACAAGTCAAAAAATGAAAATGACCTA-TATTAAACCACGAGTCAAAAAATGAAAGG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAA-A
**
5129744 TGACCAAG
63 TGACTGAG
** * * * * * * **
5129752 ATT-AACCTACAAGTTAGAAAATGAAAA-CAGCCAAGACTAAACCGTGAGTCAGAAAATGAAAAT
1 ATTAAACC-ATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAAT
5129815 GACAT-AG
64 GAC-TGAG
* ** * * ** * * *
5129822 ATTAAACAACAAGTCAGAAAATAAAAATGA-TCA-GATTAAATTATGAGTAAAAAAAT-AAAACT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAA-T
* *
5129884 GATTGGG
64 GACTGAG
* * * * * * * **
5129891 ATTAAACAACT-AGT--AAAAA--AAAATGATTGGGATTAAACCACAAATCAAAAAATTAAAACA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5129951 ACTGGG
65 ACTGAG
* * * * * * *
5129957 ATTAAACCATAAGTCAAAAAATAAAAATGA-TCGCAATTAAACCATGAGTCA-AAAAAGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
*
5130020 AACTGAG
64 GACTGAG
** * * * * **
5130027 ATTAAACCACCAGTCAGAAAA-GAAAAATGACAAGGATTAAACCACAAGTCAAAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5130091 ATTAAG
65 ACTGAG
*
5130097 ATTAAACCATGAGTCAAAAAATGTAAATTGACCTA-GATTAAACCACGAGTCAGAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAAT
5130161 GA-TCGAG
64 GACT-GAG
** * * * * * * *
5130168 ATTAAACCACAAGTTAAAAAATGAAAACGACTAGAACTAAACCATGAGTTAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
** *
5130233 CCAAT
66 CTGAG
* ** * * * * * **
5130238 ATTAAGCCAAAAGTCAGAAAATGAAAAAGA-TTGAAATTAAATCACGAGTCAGAAAATGAAAGCG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5130302 ATTGAG
65 ACTGAG
* * * * ** *
5130308 ATTAAGCCACGAGTCAAAAAATAAAAATGA-TCAAGATTAAACCATAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5130372 ACTGAG
65 ACTGAG
* * * * * * *
5130378 ATT-AACCA-CATGTTAAAAAATGAAAATGACCAAGATTAAACCATGAATCAAAAAATGAAAATG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5130441 ATCAT-A-
65 A-C-TGAG
* * * * * *
5130447 ATTAAACCACCT-A-TTAGAAAATGAAAAAGACTAGGATTAAACTATGAGTCA-AAATATAAAAA
1 ATTAAACCA--TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAA-AT-GAAA
*
5130509 ATGAATGAG
62 ATGACTGAG
* * * * * ** *
5130518 ATTAAGCCATAAGTCAAAAAATAAAAATAGTCAAAAAATTAAATCACGAGTCA-AAAATTGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GAC-TAGGATTAAACCACGAGTCAGAAAA-TGAAAA
**
5130582 TGACAAAG
63 TGACTGAG
* * * * * * *
5130590 ATTAAACCATAAGTC--------AACA--ACCAGGATTAAATCACGAGTTAGAAAATGGAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5130645 -TCAG
66 CTGAG
* * * * *
5130649 AATTAAACCATGACTCAAAAAATGAAAATGACTAGGATTATACCACAAGTGAGAAAATGAAACTG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5130714 A-TCAGG
65 ACTGA-G
* ** * * * * **
5130720 ATTAAATCACCAGTCAAAAAATAAAAATGA-TCGGGATTAAACCATGAGTCAAAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5130784 ACTGAG
65 ACTGAG
* ** * * ** *
5130790 ATTAAATCACCAATCAGAAAAA-GAAAATTGA-TCAGTG-TTAAACTATAAGTTAGAAAATGAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAA-TGACT-AG-GATTAAACCACGAGTCAGAAAATGAAA
*
5130852 ATGA-TCGGG
62 ATGACT-GAG
* * ** * * * *
5130861 ATTAAATCATGAGTCGAAAAATGAAAACAACCAGGATTAAACCACAAGTCAAAAAATAAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GAAAATG
5130926 A-TCGAG
65 ACT-GAG
* * * * *
5130932 ATT-AACTCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCACGAGTCAAAAAATGAAAAAC
1 ATTAAAC-CATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAAT
* *
5130996 GA-TCAAA
64 GACT-GAG
* * * * * * * * **
5131003 ATT-AACCATGAGTCAAAAAATGAAAACGA-TTGGAATTAAATCACTAATTAGAGAATAAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGAGTCAGAAAATGAAAATG
* *
5131066 ACTAAA
65 ACTGAG
* * * * ** * * *
5131072 ATTAAACCACGAGTCAAAGAATGAAAACT-ACAAGAATTAAACCATAACAT-AAAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGA-GTCAGAAAATGAAAAT
* *
5131135 AACAGAG
64 GACTGAG
* * * * * * *
5131142 ATTAAACTATGAGTTAAAAAATGAAAAATGAGC-AAGATTAAATCGA-GAGTTAAAAAATAAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGA-CTAGGATTAAA-CCACGAGTCAGAAAATGAAAA
* *
5131205 TGATTGGG
63 TGACTGAG
* * ** * ** * * * **
5131213 ATTAAATCAAGAGTCAAAAAATGAAAATGA-TCAAAATTAAATCATAAATCAAAAAATAAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
**
5131277 ACCCAG
65 ACTGAG
* * * * * * * *
5131283 ATTAAACCTTGAGTCAGAAAATGAAAA--A-T--GA-TCAACCATGAGTCAGACAAGGGAAATGG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5131342 TTGAG
66 CTGAG
* * * * * * * * *
5131347 ATTAAGCCATGAGTCAGAAAATGAAAATTACCCA-TATTAAACAATGAGTCAAAAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5131411 ATCT-AG
65 A-CTGAG
* * * * * *
5131417 ATTAAATCATGAGTTAGAAAAT-AAAATCGA-TCAGGATTAAACTATC-AGTCAAAAAAAGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACT-AGGATTAAACCA-CGAGTCAGAAAATG-AAA
*
5131479 ATGACTGTG
62 ATGACTGAG
* * *
5131488 ATTAAACCACGAGTCAAAAAATGAAAATGACTGGGATTAAACCACGAGTTAGAAAATGAAAACT-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAA-TG
* *
5131552 ATTGCG
65 ACTGAG
** ** * * * * *
5131558 ATTAAATAACAAGT-TAGAAA--AAAATGA-TCAGGATTAAACCATGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5131619 A-TTAGG
65 ACTGA-G
* * * * * **
5131625 ATTAAA-C-TGCAAGTC-ATAAATTAAAATTGACTGGGGTTAAACC-CTAAGTCA-AAAAAAACA
1 ATTAAACCATG--AGTCAAAAAATGAAAA-TGACTAGGATTAAACCAC-GAGTCAGAAAATGA-A
* *
5131685 AACGACTGAC
61 AATGACTGAG
* * *
5131695 ATTAAACCCCA-G-GTCAGAAAATGAAAATGA-TCAGGATTAAACCACAAGTCAAAAAATGAAAA
1 ATTAAA--CCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAA
*
5131757 CGATCT-AG
63 TGA-CTGAG
* * * * * *
5131765 ATTAAACTGAT-ATTCAAAAAATAAAAAATGACTGGGATTAAACTAC-AGGTCAAAAAATGAAAA
1 ATTAAAC-CATGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGA-GTCAGAAAATGAAAA
*
5131828 TGA-TCGAT
63 TGACT-GAG
* * * * * * * * *
5131836 ATTAAACTATTAATTAGAAAATGAAAATGA-TCAAGATTAAATCACAAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATG-AAA--
*
5131900 ATTAAACCACT-AGG
62 A-T----GACTGA-G
*** * * * *
5131914 ATTAAACCATGAGTTGGAAAATGAAAATGAC-AGAGATTAAATCATGAGTTAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5131978 ACTTAG
65 ACTGAG
** * * * * **
5131984 ATTAAACCACCAATCAGAAAATGAAAATGA-TCAAGATTAAACCATGAGTCAG-AAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5132047 ACAAT-A-
65 AC--TGAG
* * * * * * *
5132053 ATTAAACCACCT-A-TTAGAAAAA-AAAAACT-ACCAGGATTAAACTACGATTCAAAAAATGGAA
1 ATTAAACCA--TGAGTCA-AAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAGAAAATGAAA
5132114 ATGACTGAG
62 ATGACTGAG
** * * *
5132123 ATTAAACCACAAGTCAAAAAATGAAAATGA-TCGGAATTAAACTAC-ACCTCA-ACAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGA-GTCAGA-AAATGAAAA
* *
5132185 -GCAATTGGG
63 TG--ACTGAG
* ** * * * *
5132194 ATTAAGCCGCGA-TCAAAAAATGAAAATGA-TCAAGATTAAACCACAAGTCAGAGAATGGCAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAAT-GAAAAT
5132257 GA-TCGAG
64 GACT-GAG
* * * * * *
5132264 ATTAAACTATGAGTCAAAAAATGAAAATGA-TAGAAATTAAATCATGAGTCAGAGAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
** *
5132328 ACCAAA
65 ACTGAG
* * * * * * * *
5132334 ATTAAACCAAGTGTCAGAGAATGAAAACGA-TCAGAATTAAACCACAAGTTAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5132398 ACAGGG
65 ACTGAG
* * * * * * * * *
5132404 ATTAAACTACGTGTTAAAAAAATGAAAAATGAATGGGATTAAACTAAGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAG-TCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5132469 GACTAAA
64 GACTGAG
* ** * * * * * *
5132476 ATTAAATCACAAGTTAGAAAATGAAAACGA-TCAAGATTAAACCACAAGTTAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5132540 ACAGGG
65 ACTGAG
* ** * * * * * *
5132546 ATTAAACTACAAGTTAGAAAATGAAAATGACTAGGATTAAGCCATGAGTCA-AAAATACAAAATT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GAAAATG
*
5132610 ACTGGG
65 ACTGAG
** * * * ** * * * *
5132616 ATTAAATTATGAGTCAGAGAAATAAAAATGACCAATATTAAATCATGAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5132681 A-TCGAG
65 ACT-GAG
* ** * * * *
5132687 ATTAAACCATGAGTCAAAAAATGAAAATGA-TAGGAATTAGATTA-GTAGTTAAAAAATAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACG-AGTCAGAAAATGAAAAT
* *
5132750 GATTGAA
64 GACTGAG
* * * ** * * *
5132757 AATAAACCATGGGTCAGAAAATGAAAACAAC-ATGGATTAAATCATGAGTCAGAAAATGAAAA-C
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5132820 AATCAAG
65 ACT-GAG
* * * * * * * * *
5132827 ATTAAAACATGAGTTAGAAAATGAAAACGACCTA-AATTAAACAAAGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5132891 A-TCGAG
65 ACT-GAG
* *** * * * * ** * *
5132897 ATAAAAATGTGAGTTAGAAAATGAAAAACGATTAGGATTAAACCATAAGTCAGAAAATGAATACG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5132962 ATTGGG
65 ACTGAG
* * * * * *
5132968 TTTAAACCATGAGTTAAGAAATGAAAATGA-TCGGGATTAAAATCACTAGTCA-AAAATGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATT-AAACCACGAGTCAGAAAATG-AAAA
5133031 TGACT-AGG
63 TGACTGA-G
* * * * *
5133039 ATTAAACCACGAGTCAAAAAATGAAAATGA-TCGGGATTAAACCACAAGTCAAAAAATGAAAA-C
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5133102 AATCAAG
65 ACT-GAG
* * * *
5133109 GTTAAACCATGAGTTGAAAATGAAAATGAAAAGAAAAATGACT-GAGATTAAATCATGAGTCAGA
1 ATTAAACCATGAG-T--CAA--AAAAT-----G-AAAATGACTAG-GATTAAACCACGAGTCAGA
* * *
5133173 AAAAGAAAATGACTAAAA
54 AAATGAAAATGACT-GAG
* * * *
5133191 ATTAAACCAAGAGTCAGAAAATGAAAAATGACT-GAGATTAAACCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
*
5133255 GATTGAG
64 GACTGAG
** * * * * * *
5133262 ATTAAACCACCATTCAGAAAATGAAAATCGAAC-AGG-TTAAATCAAGAGTTAGAAAATGTAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAAT-G-ACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5133325 GACAGGG
64 GACTGAG
* * ** * * * *
5133332 ATTAAACCACGAGTCAGAAAATGAAAAACAATCAAGATTAAACCACGAGTTAGAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5133397 ATTGAG
65 ACTGAG
* * * * * ** * *
5133403 AGTAAA--TTGCCAGTCTAAAAAA-AAAAATTAATCAAAATTCAAATCACGAAGTCAAAAAATGA
1 ATTAAACCATG--AGTC-AAAAAATGAAAATGACT-AGGATT-AAACCACG-AGTCAGAAAATGA
* **
5133465 AAACGACCAAG
60 AAATGACTGAG
** * * * **
5133476 ATT-AA-CACTGAGTCTGAAAATGAAAATAATTCGGAATTAAACTGGCGAGTCCA-AAAATGAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGG-ATTAAAC-CACGAGT-CAGAAAATGAAA
5133538 CATGACT-AGG
62 -ATGACTGA-G
** * * * *
5133548 ATTAAATTATGAGTCAGAAAAA--AAACTAGAACTAGGATTAAACCACAAATCCAGAAAATGAAC
1 ATTAAACCATGAGTCA-AAAAATGAAAAT-G-ACTAGGATTAAACCACGAGT-CAGAAAATGAAA
* **
5133611 ATGGGGCCAAG
62 AT--GACTGAG
* * * * * * *
5133622 ATTAAATCATCGAGTTCAGAAAAT-CAAATCGATTGGGATTAAACCAATG-GAACAGAAAAATGA
1 ATTAAACCAT-GAG-TCAAAAAATGAAAAT-GACTAGGATTAAACC-ACGAG-TCAG-AAAATGA
**
5133685 AAATGACCAAAGG
60 AAATGA-CTGA-G
* * * * * * *
5133698 ATTAAAATCAATGAGTCAAGATAATGAAAAATCGCCTAGGGTTAAACCATGAGTTAGAAAATAAA
1 ATT-AAA-CCATGAGTCAA-AAAATG-AAAAT-GACTAGGATTAAACCACGAGTCAGAAAATGAA
*
5133763 AACT-ACTAAGG
61 AA-TGACTGA-G
** * * * *
5133774 ATTAAACCCCGAGTCAATAAAAGTGAAAATGACAACCAGCGATTAAAGCATGAGTCAAAAAAT-A
1 ATTAAACCATGAGTCAA-AAAA-TGAAAATG---ACTAG-GATTAAACCACGAGTCAGAAAATGA
** *
5133838 AAACAACT-AT
60 AAATGACTGAG
** * * * * * * *
5133848 ATTAAACCATGAGTTTAGAAATGAAAATGATTAGAATTAAATCACGAGCCAAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTC-AGAAAATGAAAATG
*
5133913 A-TCAAG
65 ACT-GAG
* * * * * * * *
5133919 ATTAAACCATGAGTCAGAAAGTAAAAATGACCT-GGATTAAATCATGA-TAAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5133982 AATGAA
65 ACTGAG
* ** * * * * ** * **
5133988 ATTAAATCACAAGTTAGAAAATGAAAATGA-TCGAGATTAAATCATAAGTTAGAAAACAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5134052 AC-AAGG
65 ACTGA-G
** * * **
5134058 ATTAAACCACCAGTC-AGAAA--AAAATGA-TCGGGATTAAACCGTGAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5134119 A-TCGAA
65 ACT-GAG
* * * * * * * ** ** * *
5134125 ATTAGATCGTGGGTCAGAAAATAAAAATGACCAAAATTAAATTA-GAAGTCAAAAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACG-AGTCAGAAAATGAAAATG
**
5134189 ACCAAG
65 ACTGAG
* * * *
5134195 ATTAAACCACT-AGTCAAAAAATGAAAATGA-TCAGGATTAAACCCCTAGTTAGAAAATGAAAAC
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5134258 AAC-CAG
64 GACTGAG
** * * * * *
5134264 AATTAAACCACCAGTCAAAAAATGAAAAT-AATAGGGATTACACCATGAGTCAAAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5134328 AAC-CATG
64 GACTGA-G
* * ** * * * *
5134335 ATGAAATCACCAGTCAAAAAAAGAAAAACGA-TCAGG-TT-AACCATGACAT-AGAAAAT-AAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACT-AGGATTAAACCACGA-GTCAGAAAATGAAAA
*
5134395 TGA-TCGGG
63 TGACT-GAG
* ** * * * * * **
5134403 ATTAAATCACAAGTTAGAAAATGAAAACGA-TCGAAATTAAACCATAAGTCA-AAGAATGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAA-AATG-AAAA
5134466 TGACTGAG
63 TGACTGAG
* * * * * * * * * * *
5134474 ATTAATCTACGAGTC-AAAAATGAAAAAGA-TCGAAATTAAATCATGAGTTAGAGAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
* *
5134537 ATTGAA
65 ACTGAG
* * * * * *
5134543 ATTAAA-CAAGAGTCAAAGAATGAAAATGA-TTGAAATTAAACCATGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5134606 A-TAGGG
65 ACT-GAG
* * * * * *
5134612 ATTAAACCACGAGTCAAAAAATGAAAAAGACT-GTGATTAAATCATGAGTCAAAAAATAAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAAT-GAAAAT
*
5134676 GA-TTAGG
64 GACTGA-G
** * * * ** * * * *
5134683 ATTAAATTATGAGTTAGAGAAATAAAAATGACTAATATTAAATCACAAGTTAGAAAATAAAAATG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5134748 A-TCGAG
65 ACT-GAG
* * * * * * *
5134754 ATTAAACCACGAGTTAGAAAATGAAAATGA-TGGGAATTAGATCAAC-AGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTA-AACCACGAGTCAGAAAATGAAAAT
*
5134817 GACTGAA
64 GACTGAG
* * * * * *
5134824 AATAAACCA-CAGGTCAAAAAATGAAAATGAC-ATGGATTAAATCATGAGTTAGAAAATAAAAAT
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAAT
*
5134887 GATTGAG
64 GACTGAG
* * * * * * * *
5134894 ATTAAAACATGAGTCAGAAAATGAAAACGATCCA-AATTAAACCAAGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5134958 ACTGGG
65 ACTGAG
* * * * * * * * * * * * *
5134964 ATAAAATCATGAGTTAAAACATAAACAATGATTCA-AATTAAACTACAAATTAGAAAATGAATAC
1 ATTAAACCATGAGTCAAAAAATGAA-AATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5135028 GA-TCAGG
64 GACTGA-G
* * * * * * *
5135035 TTTAAACCATGAGTTAAGAAATGAAAATGAC-CGAGATTAAATCACAAGTCAAAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
*
5135099 GA-TCAGG
64 GACTGA-G
* * * * * * **
5135106 ATTAAACAACGAGTTAAAAAATGAAAATGA-TCAGGATTAAACCACAAGTTAGAAAGTGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5135170 ACTCGA-
65 ACT-GAG
* * * * *
5135176 ATTAAACCATGAGTCAGAAAATAAAAATGA-TCGAGATTAAACTAGGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-----A-GAAAAT-
5135240 AAAAGAAAAATGACTGAG
58 ----G-AAAATGACTGAG
** * ** * * * **
5135258 ATTAAACCACAAGTC-AGAAA--AAAATGACTAAAATTAAACCAAGAGTCAAAAAATAAAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GAAAATG
5135320 ACTGAG
65 ACTGAG
* * * * *
5135326 ATTAAATCATGAGTCAAAAAATGAAAACGACTAGGATTAAACCACTATTCTGAAAATGAGAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGA-AAATG
*
5135391 AATG-G
65 ACTGAG
* * * * * * **
5135396 ATTAAACTAAGGGTCAAAAAATGTAAATGA-TAGGGATTAAACCATGAGTCAGAAAATGTAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAATG
**
5135460 ACCAAG
65 ACTGAG
* * * * * ** * ** *
5135466 ATTAAACCATGAGTTAGAAAATGAAAAGGAC-CGAGAGTAAATTACCAACCTA-AAAAAGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-AGAAAATG-AAAA
*
5135529 TGA-TCGAA
63 TGACT-GAG
* * * * ** ** * *
5135537 ATTAAACCGTAAGTTAGAAAATGAAAACAACTAGGATTAAATAATGAGTCTGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5135602 TCTG-G
66 -CTGAG
** * * * *
5135607 ATTAAACCACAAGTCTAAAAATAAAAATGACTGGGATTAAACCATGAGTCCA-AAAA-G-AAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGT-CAGAAAATGAAAATG
*
5135669 A-TAGGG
65 ACT-GAG
* * * * * *
5135675 ACTAAACCGTGAGTCAAAAAATGAAAACGGCTAGGATTAAACCACAAGTCAGAAAATCAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5135740 -TAGGG
66 CT-GAG
* * * * * * *
5135745 ATTAAACCATGAATCAAAAGATGAAAATGACCAAGATTAAACCACAAGTTAGATAATGAAAATTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAA-TG
*
5135810 CCT-AGG
65 ACTGA-G
* ** * *
5135816 GTTAAACCCCGAGTCAAAAAA--ATAAA-GACTATCAGGATTAAACCCCGAGTCATAAAATGAAA
1 ATTAAACCATGAGTCAAAAAATGA-AAATGAC--T-AGGATTAAACCACGAGTCAGAAAATGAAA
*
5135878 ATGA-TCAGG
62 ATGACTGA-G
* * * * * * *
5135887 ATTAAAGCATGAGTCAAAAAATGAAAATGATTGGGACTAAACCCCCAG-CA-AAAA-AAAAAT-A
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
* * *
5135948 ATCAAA
66 CT-GAG
* * * * * ** * *
5135954 ATAAAACCACGAGTCAAAAAATAAAAATGA-TCAGTATTAAATCATAAGTCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5136018 A-TCGAA
65 ACT-GAG
** * * * *** *
5136024 ATTAAATAATGAGTCAAAAACTAAAAATGA-TCGAGATTAAACCACGAGTCAGAAAGCAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5136088 AC-CAGG
65 ACTGA-G
* * * * * * * * **
5136094 ATTAAACCATAAATCAAAAAATAAAAATGAAT-GAAATTAAATCATGAGTTAGAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5136158 ACCGAG
65 ACTGAG
* * ** * * * * * * * *
5136164 ACTAAATCACAAGTCAAAAAATAAAAATGACAATGATTAAACCGTC-AATCAAAAAAAGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACC-ACGAGTCAGAAAATG-AAAAT
* *
5136228 GACCGGG
64 GACTGAG
* ** * * * *
5136235 ATTAAACCATGAGTCAAAAAATGAAAACT-ACCAAAATTAAATCATGGGTCAGAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5136299 A-TCAAA
65 ACT-GAG
* ** * * * *
5136305 ATTAAATCATGAGTCAAAAAATGAAAACAATTGGGATTAAACCACTAGTTAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5136370 -TCAG
66 CTGAG
** * * *** * *
5136374 AATTAAACCACT-AGTCAAAAAATGAAAACAATTGGGATTAAACTGTGAGTCAAAAAATGAAAAC
1 -ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5136438 AACTAAG
64 GACTGAG
* * * * ** ** *
5136445 ATGAAATCACT-AGTTAGAAGAAA--AAAATGA-TCAAG-TT-AATTATAAGTCAAAAAATGAAA
1 ATTAAACCA-TGAGTCA-AA-AAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAA
* *
5136504 ACGATTG-G
62 ATGACTGAG
* ** * * *
5136512 ATCTAAATCACAAGTCAAAAAATGAAAATGACCAAGATTAAACCACGAGTCAAAAAATGAAAAAT
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAAT
*
5136577 GA-TCGCG
64 GACT-GAG
** * * * * *
5136584 ATTAGCCCATAAGTCACAAAATGAAAATGACTAGAATTAAACCATGAGTCAAAAAATGAAAACTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAA-TG
* *
5136649 CCAGA-
65 ACTGAG
* * * * * * * * *
5136654 ATTAAATCA-GAAGTTAGAGAATAAAAATGA-TCGAAATTAAACCAAGAGTCA-AAGAATAAAAA
1 ATTAAACCATG-AGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAA-AATGAAAA
*
5136716 CT-A-TCAG
63 -TGACTGAG
* * * * *
5136723 AATTAAACCATGAGTTAGAAAATGAAAA-CAATGGGGATTAAACCA-GAGTCAGAAAATGAAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATG-AAAA
*
5136786 TGAACAGA-
63 TG-ACTGAG
* * * * * * * *
5136794 ATTAAACCATTAGTCAGAACATGAAAATGA-TCGAGATTAAACCACAATTTA-AAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5136857 ATTGAG
65 ACTGAG
* ** * *
5136863 ATTAAACCATGAGTCAGAAAATGAAAACAACCAGGATTAAACCACGAGTCA-AAATATGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAA-ATG-AAAAT
* *
5136927 GAC-CACA
64 GACTGA-G
** * * * * ** * *
5136934 ATTAAATTACGAGTCAGAGAAATAAAAAATCACT---ATTAAATGACAAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5136996 GATTGAG
64 GACTGAG
* * * * * * ** * *
5137003 ATTTAACCATGAGTTAAAAAATGAAAACGACGAGAATGAAATTACCAGTCAAAAAATGAAAA-GA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5137067 -TCGAG
66 CT-GAG
* * * *
5137072 ATTAAACCACGAGTCAAAAAATGAAAACGAC-ATGGATTAAATCC-TGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTA-GGATTAAA-CCACGAGTCAGAAAATGAAAAT
*
5137135 GACTGGG
64 GACTGAG
* *** * * * ** * **
5137142 ATT-AACCACGAGTTTGAAAATGAAAATGACCCA-AATAAAACCAAAAGTCAAAAAATGAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5137205 ACCGAG
65 ACTGAG
* * * * * * * * * *
5137211 ATTAAACCACGAGCCAAAAAATAAAAAACGATTAGGATTGAACCATGAG-CAAAAAATGAATACG
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5137275 ACAGGG
65 ACTGAG
* ** * * ** * * * *
5137281 TTTAAACCACAAGTCAAGAAATGAAAATGA-TTGAGATTAAATTACAAGTTAGAAAATTAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAA-TGAAAAT
*
5137345 GA-TCGGG
64 GACT-GAG
* * * ** * * * **
5137352 ATTAAAGCATGAGTCAGAAAATGGAAACAACCCA-GATTAAACCACGAGTTAGAAAATGTAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5137416 ACTGGG
65 ACTGAG
** * * * *
5137422 ATTAAACCATGAGTCAAAAAACAAAAATGA-TCGAGATTAAACCACCAATTAGAAAAACT-AAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAG-AAAA-TGAAAA
**
5137485 TGACCAAG
63 TGACTGAG
* * * ** * *
5137493 ATTAAACC-TCAAGTC--AAATTGAAAATGACCAAAATTAAACCAAGAGTCAAAAAATGAAAAAT
1 ATTAAACCAT-GAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAAT
* *
5137555 GATTGGG
64 GACTGAG
* * * * * ** *
5137562 ATTAAACCATGAGTCAGAAAATGAAAAAGACAAGGATTAAATCATC-ATTTTGAAAATAAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTCAGAAAAT-GAAAAT
* *
5137626 GAATGGG
64 GACTGAG
** * ** * * * * *
5137633 ATTAAACCAAAAGTCATAAAATCTAAACGATTGGGATTAAACTACGAGTAAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5137698 -TCAAG
66 CT-GAG
* * * * * * * * **
5137703 ATTAAACAATGAGTTAGAAAATAAAAATGA-TCGGGATTAAACCA-TAGTCAAAAAAAGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5137766 AATCGAG
65 ACT-GAG
** * ** * * * * * *
5137773 ATTAAACCACAAGTTAAAAAATGAAAACAACCAAGATGAAACAATGAGTCAGAAAATGAAAAAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5137838 CT-ATG
66 CTGA-G
* * * * **
5137843 ATTAAACCAGGAGTCAGAAAATTAAAATGACTAAGATTAAACCATAAGTCAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5137908 CTG-G
66 CTGAG
* ** ** * * * *
5137912 AATTAAATCACAAGTCAAAAAATGAAAACAACT-GTGAATAAATCATGAGTCAAAAAATGAAAAT
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
5137976 GACATG-G
64 GAC-TGAG
* ** * * * * * * * * *
5137983 ATTCAATTACGAG-CTAGAAGATGAAAACGACTGGGATTAAACCAAGAGATAAG-TAATGAAAAC
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACTAGGATTAAACCACGAG-TCAGAAAATGAAAAT
5138046 GATCT-AG
64 GA-CTGAG
* * * * * ** * * *
5138053 ATTAAATCATGAGTCAAGAAATGAAAACGAC-CGTGATTAAATCATAAGTCAAAAAATAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
* *
5138117 A-TCAAA
65 ACT-GAG
** * * * * * *
5138123 ATTAAATTAAGAGTAAAAAAATAAGAAAACG-CTCAGAATTAAACCATGAGTCAAAAAAATGAAA
1 ATTAAACCATGAGTCAAAAAAT--GAAAATGACT-AGGATTAAACCACGAGTC-AGAAAATGAAA
*
5138187 GTGACAT-AG
62 ATGAC-TGAG
* * ** * * * * *
5138196 ATTAAACAACT-AGTCAAAAAAAGAAAAACAATCGAAATTAAACTACGAGTCAAAAAATGAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
**
5138260 GACCCAG
64 GACTGAG
* ** * * * *
5138267 ATTAAACCA-CA-TCCGAAAATGAAAATGACAATGATTAAACCATGAGTCAGAAAAAGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
*
5138330 AC-CAGG
65 ACTGA-G
* * * * * * * * *
5138336 ATTAAATCATGAGTCAAAAAATAAAAATGAATAAGATTCAATCGCGAGTTAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5138401 -TCGTA-
66 CT-G-AG
* ** *
5138406 ATTAAACCATAAGTCAAAAAACAAAAATGACTCA-GATTAAACCACAAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5138470 A-TCAAG
65 ACT-GAG
* * * * * *
5138476 ATTAAACCATGAGTTAGAAAA--AAAATGA-TCATGATTAAACCATGAGTCAAAAAATTAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5138538 A-TCAAA
65 ACT-GAG
** * * * * *
5138544 ATTAAATTATGCA-TAAAAAAATGAAGGATGATTGGGATTAAACCACGAGTTAGAAAATGAAAAT
1 ATTAAACCATG-AGTCAAAAAATGAA-AATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5138608 GA-TCAGG
64 GACTGA-G
* * * * * * * * * *
5138615 AATAACCCATGCGTGAGAAAATGAAAATG-TTCAGGATTAAATCATGAGTCAAAAAATGAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5138679 ACTGGG
65 ACTGAG
* * *
5138685 ATTAAACCACT-AGTCAAAAAAAGGAAAAT-AATCGAGATTAAACCACCG-GTCAGAAAAT-AAA
1 ATTAAACCA-TGAGTC-AAAAAATGAAAATGACTAG-GATTAAACCA-CGAGTCAGAAAATGAAA
* *
5138746 GACGA-TCGAC
62 -ATGACT-GAG
* * * * * * *
5138756 ATTAAGCCACGAGTCAAAAAATGAAAATAACCTA-GATTAAACCATGAGTCAAAAAATAAAAATA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5138820 ATTGTG
65 ACTGAG
* * * ** * *
5138826 ATTAATCCATGAGTCAAAAAATGAAAATGCCCAAAATTAAACCAC-ATGTTAGAAAAAGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGA-GTCAGAAAATG-AAAAT
*
5138890 GA-TCGGG
64 GACT-GAG
* * * * *
5138897 ATTAAACCATCAGTTC-AAAATTGAAAATGA-TCAAGATTAAACCACTAGCCA-AAAA--AAAAT
1 ATTAAACCATGAG-TCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5138957 GA-TCAGG
64 GACTGA-G
* *** * ** * * *
5138964 ATTAAATCACCCGTCAGAAAATGAAAACCA-TTGAGATTAAACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5139028 AGC-CAG
65 A-CTGAG
** * * * * *
5139034 ATTAAACCATGAGTCCGAAAATAAAAATGA-TCGAGATTAAACCATGATTCA-AAAAAGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
5139097 GA-TCGAG
64 GACT-GAG
* * * * *
5139104 ATTAAACCATAAGTCAAAAAATGAACATGACT-GGAATTAAACGATGAGTCAGAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGAGTCAGAAAATGAAAATG
* *
5139168 ATTGGG
65 ACTGAG
* ** * * * *
5139174 ATTAAACCATGAGTCAAAAAATAAAAACAATTAGAATTAAACCATGAGTCAAAAAATGAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
5139239 ACT-ATG
65 ACTGA-G
** * * * * * * **
5139245 ATTAAATAACGAGTCAAAGAAATAAAAAAGA-TTGGTATTAAA--TC-AGTCAAAAAAACAAAAA
1 ATTAAACCATGAGTCAAA-AAATGAAAATGACTAGG-ATTAAACCACGAGTC-AGAAAATGAAAA
*
5139306 AGACTG-G
63 TGACTGAG
* * ** * * * *
5139313 TATTAAATCA-GAAGTCAAAAGATGAAAACAAC-CGAGATT-AACCTACGATTCAAAAAATAAAA
1 -ATTAAACCATG-AGTCAAAAAATGAAAATGACTAG-GATTAAACC-ACGAGTCAGAAAATGAAA
*
5139375 ATGA-TGGG
62 ATGACTGAG
* * * * *
5139383 ATTCAAATCATCGA-TCAAAAAATGAAACTGACCAGGATTAAACCACAAGTCAGAAAATAAAAAT
1 ATT-AAACCAT-GAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
5139447 GACATG-G
64 GAC-TGAG
* * * * * *
5139454 ATTAAATCATGAGTCAAGAAATG-AAATGACTGGGATTAAATCATGAGTCAGAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5139518 TTGAG
66 CTGAG
* * * * *
5139523 ATTAATCTATGAGTCAAAAATTGAAAATGA-TCGAGATTAAACCATC-AGTCAGAAAA-AAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCA-CGAGTCAGAAAATGAAAAT
* *
5139585 GATTGGG
64 GACTGAG
* * * * * * * *
5139592 ATTAAA-CATGAGTTAGAAAATGAATACT-ACCATGG-CTACACTATGAGTCA-AGAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAA-AATGACTA-GGATTAAACCACGAGTCAGA-AAATGAAAA
* *
5139653 CGA-TCAGG
63 TGACTGA-G
* * * * ** * * **
5139661 ATTAAATCATGAGTTAGAAAATGAATACT-ACCGGGGTTACATTACGAGTCA-AGAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAA-AATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAAT
*
5139724 GATCGGGATTAACTAGG
64 GA-C-----T---GA-G
* * *** * *
5139741 ATTAAACCATG-GTTAGAAAATGAAAATGACTCTAATTAAACCAAGAGTCAGAAAATGAATATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5139805 CTGAG
66 CTGAG
** * ** * * * *
5139810 ATTAAACCACAATTCAAAAAATGAAAACAACCCA-GATTAAACCAAGAGTCAGAAAATAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5139874 ACTAAA
65 ACTGAG
*** * * * * * *
5139880 ATTAAATTGTGAGTTAGAAAATGAAAAACGAACT-GGATTGAACCACGAGTAAGAAAATGAATAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATG-ACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5139944 AAC-CAG
64 GACTGAG
* * * * ** *
5139950 TGTTAATTA-CA--AGTCAAGAAATGAAAATGA-TCGAGATTAAATCAATAGTCAAAAAATGAAA
1 -ATTAA--ACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAA
* * *
5140011 A-AAGGTTAGG
62 ATGA-CTGA-G
* ** * * * ** *
5140021 ACTAAACCACAAGTCAAAAAATGAAAATGATTAAGATTAATCCTTGAGTCAGAAAATGAAAA-CA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
* * *
5140085 ATAAAA
66 CT-GAG
* * * * * * * *
5140091 AATAAACCA-CATGTAAAAAAAGGAAAACGA-TCAGGATTAAACCACAATTTAGAAAATGAAAAT
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5140154 GACCGGG
64 GACTGAG
* ** * ** * * ** *
5140161 AGTAAACCACCAGTCAAAAAAATAAAAACAACCAGGATTAAAACATTAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTC-AAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5140226 A-TCGGG
65 ACT-GAG
* * * * * * *
5140232 ATTAAACCATGAGTTAGAAAATCAAACA--ACTGGGATTAAATCATGAGTCAGAAAATGAAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5140295 ACT-ATG
65 ACTGA-G
* * * * * * * ** * * *
5140301 ATTAAACTACGACTCAGAGAATGAAAAAT-AATTGTGATTAAATTACAAGTAAGAGAAATAAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGA-AAATGAAAA
* *
5140365 AGA-TCAG
63 TGACTGAG
* * * *
5140372 TATT-AA--ATCA--CAAATAAA--AAAATGAC-ATGGTTTAAATCACGAGTCAAAAAATGAAAA
1 -ATTAAACCATGAGTCAAA-AAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAA
5140429 TGACTTG-G
63 TGAC-TGAG
* * ** * * * *
5140437 ATTAAACCAAGAGTCAAAAAATAAAAATGA-TCAAAATTAAATCGCGAGTCAAAAAATTTAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAA-TGAAAAT
*
5140501 GA-TCAGG
64 GACTGA-G
* * * * * *
5140508 ATTAAACCATGAGTCAAAAAATGAATATGACCA-AATTTAAACTATGAGTTA-AGAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGA-TTAAACCACGAGTCAGA-AAATGAAAAT
5140571 GA-TCGAG
64 GACT-GAG
* * * * * *
5140578 ATTAAATCATGAGTTATAAAATTGAAAAATGACAAAGATTAAACCATGAGTCAGAAAATGAAAAT
1 ATTAAACCATGAGTCA-AAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
**
5140643 GACCAAG
64 GACTGAG
* *
5140650 ATTAAA-CA-GCAAGTCAAAAAATGAAAATGACCA--ATTAAACCACGAGTTAGAAAATGAAAAT
1 ATTAAACCATG--AGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
5140711 GA-TCGAG
64 GACT-GAG
** *** *
5140718 ATTAAACCACAAGTTTGAAAATGAAAATGACTAGGATTAAACCAC----CAGTAAA--AAAAT--
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5140775 C-AAG
66 CTGAG
* * * * *
5140779 ATTAAACCACGAGTCAAAAAATGAAAAACGA-TCAAGATTAAAACCATGAGTCATAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACT-AGGATT-AAACCACGAGTCAGAAAATGAAAA
** * *
5140843 CAATTGGG
63 TGACTGAG
* * * * *
5140851 ATTAAACCACT-AGTAAAAAAATAAAAAGTGACCAGAATTAAACCACGAATCAGAAAATGAAATA
1 ATTAAACCA-TGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAGAAAATGAAA-A
* *
5140915 CGACTGGG
63 TGACTGAG
* ** * ** *
5140923 ATTAAACTAAAAGTC-AAAAATAAAAATGA-TCAAAAATAAACCATCGA-TCAG-AAA--AAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCA-CGAGTCAGAAAATGAAAAT
*
5140982 GA-TTAG
64 GACTGAG
* * * *
5140988 TATTAAACCATGAGTCAAAAAATTAAAATGAC-CGAGATTAAAACATGA-TCCA-AAAATGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGT-CAGAAAATGAAAA
**
5141050 TGACCAAG
63 TGACTGAG
* * * * * * *
5141058 ATTAAGCCA-CATGTTAGAAAA-GAAAAATGA-TAGGGATTAAACCACAAGTCAAAAAATAAAAA
1 ATTAAACCATGA-GTCAAAAAATG-AAAATGACTA-GGATTAAACCACGAGTCAGAAAATGAAAA
*
5141120 TGA-TCGGG
63 TGACT-GAG
* * * * *
5141128 ATTAAACCAGGAGTTAAAAAATGAAAAT-AATCAGGATTAAACCACCAATC---AAA--AAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5141187 ATTGAG
65 ACTGAG
* * * * * * *
5141193 ATTAAACTATGAGTTAGAAAATGAAAATGACT-GTGATTAAATCACGAGTAAAAAAATAAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAAT-GAAAAT
*
5141257 GATTG-G
64 GACTGAG
* * ** * ** * * * *
5141263 TACTAAATCACAAGTTAAAAAATGAAAACAAGC-ACGATTAAGCCACCTA-TCAGAAAAAGAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCA-CGAGTCAGAAAATG-AAA
5141326 ATGA-TCGAG
62 ATGACT-GAG
** * * ** * * * *
5141335 ATTAAACCACAAGTAAAAAAATGAAAACGA-TCAAAATTAAATCACAAGTCAGAAATTGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
**
5141399 ACCAAG
65 ACTGAG
* * * * * *
5141405 ATTAAATCGTGAGTCAAAAAATGAAAATCGATTA-GAGTTAAACC-CTAAGTCAAAAAAAAGAAA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACTAGGA-TTAAACCAC-GAGTC-AGAAAATGAAA
* *
5141468 ACT-ACTAAA
62 A-TGACTGAG
*** * * * * * * *
5141477 ATTAAACCCCAAGTTAGAAAATGAAAAGGTCTAGGATTAAACCAAGAGTTAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5141542 -TCGAG
66 CT-GAG
** * * * * *
5141547 ATTAAACCACCAGT-TAGAAA--AAAATGACTGGGATTAAACCATGAGTCAGAAAATGAATATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5141609 CTAAG
66 CTGAG
* ** * ** * * *
5141614 ATTAAACTATGAGTTTAAAAATGAAAATGACCAAAATTAAATCACGAGTCAAAAAATCAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5141679 C-CAGG
66 CTGA-G
* * * * * *
5141684 ATTAAACGATGAGTCATAAAATGAAAAATGACTAGGGTTAAGCAACAAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5141749 ACTGGG
65 ACTGAG
* * ** * ** *
5141755 ATTAAACCACGAGTCAAAAAATGAAAAATGACCAAAATTAAACCATGAGTTGGAAAAATGACAAT
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAG-AAAATGAAAAT
* *
5141820 GA-TCAAA
64 GACT-GAG
** * * * * * * * * * *
5141827 ATTAAATTATGAGTCAGAGAATAAAAATGA-TTGAAATTAAACTAAGAGTTAGAGAATGAAATTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5141891 A-TCGAA
65 ACT-GAG
* * * *
5141897 ATTAAACCACGAGTCAAAAAATGAAAATGA-TAAGGATTAAACCATGAATCAAAAAATGAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATG-AAAAT
* *
5141961 GAATGGG
64 GACTGAG
* * * * * * *
5141968 ATTAAACTAGGAGTCAAAAAATGGAAACGAC-CGAGATTAAACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
* *
5142032 ATTGGG
65 ACTGAG
* * ** ** * *
5142038 ATTAAACCATGAGTTAGAAAATGAAAACAACT-GAGATTAAACCATAAGTTAGAAAATGAAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
*
5142102 GACAGAG
64 GACTGAG
* ** * * * * ** * *
5142109 ATTAAACCATAAGTCAGAAAATAAAAAAATAACCAAGATTAAA-TATAAGTCAGAGGAATAAAAA
1 ATTAAACCATGAGTCA-AAAA-ATGAAAATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAA
* *
5142173 AGAC-CAG
63 TGACTGAG
* * * * * **
5142180 TATTAAATCATGAGTTAGAAAATAAAAATGA-TCAGAATTAAACCACGAGTCA-AAATAACAAAA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAA-ATGAAAA
5142243 TGA-T-AGG
63 TGACTGA-G
* ** * * ** * *
5142250 AATTAAATCACCCA-TCAAAAAAATGAAAATGACCAAGATTAAACCATAAGTCAAAAAATAAAAA
1 -ATTAAACCA-TGAGTC-AAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAA
*
5142314 AGAC-GAGG
63 TGACTGA-G
* * * * * ** * * *
5142322 ATTAAACCATAAGTCAGAAAATGAAAAATAATTGGGATTAAATTACAAGTCAGAAGAATAAAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAA-AATGAAAAT
*
5142387 GA-TCGAT
64 GACT-GAG
* * * * ** * *
5142394 ATTAAATCATAAGTCAGAAAAT-AAAATTGACCAAAATTAAACCATGAGTCAGAAAATCAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5142458 -GTAGAA
65 ACT-GAG
* * ** * *
5142464 ATTAAATCACT-AGTTAAAAAATGAAAACAACCAGGATTAAACCATGAGTCAGAAAATGAAAATG
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* * *
5142528 AGTCAA
65 ACTGAG
** ** * * * * * *
5142534 ATTAAACCACAAGTCAAAAAATGAAAACAACCAGGATTAGACCACCAGTCAAAAAAAGAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
*
5142599 A-TCAGG
65 ACTGA-G
* * * * * * *
5142605 ATTAAACCATG-GGCCAGAAATGAAAATGA-TCGAGATTAAACTATGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5142668 AC-AAG
65 ACTGAG
* * * * * * *
5142673 AATAAACCATGAGTTAGAAAATGAAAATCA-TAAG-TCAAA--A--A--AAGAAAATG---A-GA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5142726 --GGG
66 CTGAG
* * ** * * * ** * ** *
5142729 ATTAGACCGTGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCA-AGAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAATG
*
5142793 A-TCGTG
65 ACT-GAG
* * ** * *
5142799 ATTAAAACATGAGTCAAAAAATGAAAAACGACT-GAGATTAAACCATAAGTTAGAAAAATAAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAG-AAAATGAAAA
*
5142863 TGA-TCGCG
63 TGACT-GAG
* ** ** * **
5142871 ATTAAACCATGAGTTAAAAAATGAAAATGACGGGGATTAAACCATTAGTCAAAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
**
5142936 CCCAG
66 CTGAG
* * * * * * * *
5142941 ATTAAACCA-CAGGTCAGAAAATGAAAACGATTAGGATTAAACTACCTA-TCAAAAAAAAGAAAA
1 ATTAAACCATGA-GTCAAAAAATGAAAATGACTAGGATTAAACCA-CGAGTC-AGAAAATG-AAA
*
5143004 ATGA-TAGGG
62 ATGACT-GAG
** * * * * * *
5143013 ATTAAACCACAAGTCAAAAAATGAAAAATGACCATGATTAGACCATGAGACAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5143078 ACT-ATG
65 ACTGA-G
* * *
5143084 ATTAAACCATGAGTCAAAAAATGAAAATAATCCA-GATTAAACCATGAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
* *
5143148 AAC-CAA
65 -ACTGAG
* * * * * *
5143154 ATTAAACCACAAAGATTAAACCACCAATCAAAAAAAGAAAAATGATTAGGATTAAACCATGAGCC
1 ATTAAA-C-C-ATGAGT-------CAA--AAAA--TG-AAAATGACTAGGATTAAACCACGAGTC
*
5143219 AAAAAATGAAAATGACTGAG
51 AGAAAATGAAAATGACTGAG
* * * * * * *
5143239 AATAAATCACGAGTCAAAAAATGAAAATCA-TAAG-TCAAA--A--AAT--GAAAATG---A-GA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5143292 --GGG
66 CTGAG
* * * ** * * * ** * ** * * **
5143295 ATTAGATCGTGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCAAAAAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5143360 C-AAGG
66 CTGA-G
* * * * ** *
5143365 ATTAAATCATGAATCAAAAAATGAAAATGA-TCAGGATTAAATCATGAGTCAGGGAAT-AAAAGC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAA-T
*
5143428 GA-TGGG
64 GACTGAG
** * * * * ** * * *
5143434 AATTAAACTGTAAGACAAAACATGAAAATGACCAAAATTAAATCATGAGTCAG-AAA-GAAAA-A
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5143496 ACAATCGAG
65 AC--T-GAG
* * * * *
5143505 ATTAAACTATGAGTCAAAAAATGAAAATGA-TCAAGATTAAACCATGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5143569 A-TCGAG
65 ACT-GAG
* * * * * ** * *
5143575 ATTAAATCATAAGTCAGAAAATAAAAAATGACCATCATTAAATCATGAGTCAGAGAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAAT
*
5143640 GA-TCGAT
64 GACT-GAG
* * * * *
5143647 ATTAAATCACAT--GTCAAAAAATGAAAACT-A-TTGAGAATAAATCATGAG-C------TAAAA
1 ATTAAA-C-CATGAGTCAAAAAATGAAAA-TGACTAG-GATTAAACCACGAGTCAGAAAATGAAA
** * *
5143701 ACCACCGAA
62 ATGACTGAG
* * * * * * *
5143710 ACTAAATCACAT--GTCAAAAGAATGAAAAATGAC-CGAAATTAAATCATGAGTTAAAAAATGAA
1 ATTAAA-C-CATGAGTCAAAA-AATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAA
*
5143772 AATGA-TCGGG
61 AATGACT-GAG
** ** * * * * *
5143782 ATTAAACTGTGAGTC-AAAAATGAAAATGACCCCGTATTAAACTACGAGTTAGAAAATAAAAAAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5143846 A-TCGAT
65 ACT-GAG
* * * * * * *
5143852 ATTAAACTATGAGTCAGAAAATGAAAACGAC-CGAGATTAAACCATGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
**
5143916 ACCAAG
65 ACTGAG
* * * * * * ** *
5143922 ATTAAACCATGAGTCAAAAAATGAATA-CAATCGGGTTTAAATCGTGAGTTA-AGAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGA-AAATGAAAAT
* *
5143985 -AATCAGG
64 GACTGA-G
* * * * *
5143992 ATTAAATCATGAGTCAAGAAATGAAAACGACT-GAGATTAAATCACGAGTCA-AAAATAAAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAAT-GAAAAT
*
5144055 GAC-CAGG
64 GACTGA-G
* * * *
5144062 ATTAAATCACT-AGTCAAAAAATGAAAATGACAAAGATTAAACCATGAGTCAGAAAATGAAAATG
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
5144126 A-TCGAG
65 ACT-GAG
* * *
5144132 ATTAAACCACT-AG-CTAGAAAAA-GAAAAATGAC-CGAGATTAAACTA--AGTTAGAAAATGAA
1 ATTAAACCA-TGAGTC-A-AAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAA
* * *
5144191 AACGATTGGG
61 AATGACTGAG
* * * ** *
5144201 ATTAAACCATGAGTCAAAAAATGAAAACGA-T-CGA--AAA--ATGA-AAAAAAAATG---AT--
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5144254 C-GGG
66 CTGAG
* * * ** * * * ** *
5144258 ACTAAACCATGAGTTAGAAAATGAATGTGACCA-GTTTGAATAATGAGTCA-AGAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGA-AAATGAAAATG
*
5144321 ACTGGG
65 ACTGAG
** * * * * *
5144327 ATTAAAGTACGAGTTAAAAAATGAAAAATAACCT-GGATTAAACCACGGGACAGAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATG-AAAATGA-CTAGGATTAAACCACGAGTCAG-AAAATG-AAA
5144391 AT-ACT-ATG
62 ATGACTGA-G
** * * * * * *
5144399 ATTAAACCATGAGTCTGAAAATGAAAA-CAGGTGGGATTAAA-CATTGAGTCAAAAAAAGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCA-CGAGTCAGAAAATGAAAAT
5144462 GACCT-AG
64 GA-CTGAG
* * * * * *
5144469 ATTAAAGCACGAGCCAAAAAATGAAAATGACTAAGATTAAACCATGAGTCAGAAAATGGAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5144534 CTG-G
66 CTGAG
* ** * * * *
5144538 ATTAAACCACCGA-TCAAAAAAACAAAAATGAAC-AAGATTAAACCATGAGTCAAAAAATAAAAA
1 ATTAAACCA-TGAGTC-AAAAAATGAAAATG-ACTAGGATTAAACCACGAGTCAGAAAATGAAAA
5144601 TGACTG-G
63 TGACTGAG
* ** * * * *
5144608 AATTAAACTACGAGTTAGAAAATGAAAAAGAAAAATGATTTGGATTAAACCATGAGTCAGAAAAT
1 -ATTAAAC--C-A-TGAGTCAA--AAAATG-AAAATGACTAGGATTAAACCACGAGTCAGAAAAT
* *
5144673 GAATACGA-TCG-G
58 GAAAATGACT-GAG
* * * * * * * * * * *
5144685 GTGTAAATCACGAGTCGAGAAATAAAAACGA-TCGCGATTAAAACATGAGTCAAAAAATGAAGAA
1 AT-TAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAA-AA
* * *
5144749 CG-TTCAAG
63 TGACT-GAG
** ** * * *
5144757 ATTAAAATACAAGTCAGAAAAATGAAAATGA-TCGCGATTAAACTATGAGTCCA-AAAATGAAAA
1 ATTAAACCATGAGTCA-AAAAATGAAAATGACTAG-GATTAAACCACGAGT-CAGAAAATGAAAA
*
5144820 TGAC-AAGG
63 TGACTGA-G
* * * *** *
5144828 ATTAAACCGTGAGTCAAAAAATGAAAATAACCTA-GATTAGATTGC-ATGTCAGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGA-GTCAGAAAATGAAAAT
* * *
5144891 AATTGGG
64 GACTGAG
* ** *
5144898 ATTAAACTACCCA-TCAAGAAAA-AAAAATGA-TAGGGATTAAACCACGAGTCA-AAAGATGAAA
1 ATTAAACCA-TGAGTCAA-AAAATGAAAATGACTA-GGATTAAACCACGAGTCAGAAA-ATGAAA
5144959 ATGACT-ATG
62 ATGACTGA-G
* * * * *
5144968 ATTAAAACATGAGTCAAAAAATGAAAATAATCCT--GATTAAGCCATGAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATGA--CTAGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5145031 GAGC-CAG
64 GA-CTGAG
* ** ** * * * * *
5145038 ATTAACCCACAAGTCAAAAAATGAAAACAATTAGGATTAAACCACAAGTCAAAAAAAGAAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
*
5145103 A-TCAGG
65 ACTGA-G
* * * * * *
5145109 ATTAAACCATGGGTCAAAAAATGAAAATGA-TCGAGATTAAACTATGAGTCAGAAAATAAAAATC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5145173 ATTGAG
65 ACTGAG
* * * * * * *
5145179 AATAAACCACGAGTCAGAAAATGAAAATCA-TAAG-TCAAA--A--AAT--GAAAATG---A-GA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5145232 --GGG
66 CTGAG
* * ** * * * ** * ** * * *
5145235 ATTAGACCGTGTCTTAGATAATGAAAACAACCAAAATTAAATCACGAGTCAAAAAATGAAAATAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5145300 C-AAGG
66 CTGA-G
* ** * * *
5145305 ATTAAATCACAAATC-AAAAATGAAAATGAGC-AGGATTAAATCACGAATCA-AAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5145367 AC-CAGG
65 ACTGA-G
* * *** * * **** *
5145373 ATTAAATCATGAGTTAGGGAAT-AAAA-GCAATGGGAATTAAACTGTAAGTCAAAAAATGAAAAT
1 ATTAAACCATGAGTCAAAAAATGAAAATG-ACTAGG-ATTAAACCACGAGTCAGAAAATGAAAAT
** *
5145436 GACCAAA
64 GACTGAG
* * * ** * * *
5145443 ATTAAATCATGAGTCAGAAAA-CAAAAACAATCGAGATTAAACCACGAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5145507 A-TCAGG
65 ACTGA-G
* * **
5145513 ATTAAACCATGAGTCAAAAAATG-AAATCGA-TCGAGATTAAATCATAAGTCCA-AAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACTAG-GATTAAACCACGAGT-CAGAAAATGAAAA
** * **
5145575 ACAATCGTC
63 TGACT-GAG
* * * * * * * *
5145584 ATTAAATCATAAGTCAAAGAAATGAAAATGA-TCGATATTAAATCA-AATGTGAAAAAATGAAAA
1 ATTAAACCATGAGTCAAA-AAATGAAAATGACTAG-GATTAAACCACGA-GTCAGAAAATGAAAA
*
5145647 CT-AATGAG
63 -TGACTGAG
* * * * * ** * * * * * *
5145655 AATAAATCATGAGTTAGAAAATCAAAACCA-TCGAAACTAAATCAC-ATGTGAGAGAATGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGA-GTCAGAAAATG-AAAA
*
5145718 TGA-TCGAA
63 TGACT-GAG
* * * *** * * *
5145726 ATTAAATCATGAGTTAAAAAATGAAAATGAC-CGAGATTAAACTGTGAGCCAAAAAATAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5145790 AC-CAG
65 ACTGAG
* * * * * * * * * *
5145795 TATTAAACTACGAGTTAGAAAATAAAAAAGA-TGGAGATTAAACCATGAGTTAGAAAATGAAAAG
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
*
5145859 GACCGAG
64 GACTGAG
* * * *
5145866 ATTAAACCATGAGTCAAAAAATAAAAAAAGACCAGGATTAAACCACGAGTCAAAAAATGGATACA
1 ATTAAACCATGAGTCAAAAAAT-GAAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GA-A-A
5145931 AT--C-G-G
62 ATGACTGAG
* * * * * * * * * * *
5145936 GTTCAAATCACGAGTTAAGAAATGAAAA-CAGTCAGTATTCAATCATGAGTCA-AGAAATGAAAA
1 ATT-AAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGA-AAATGAAAA
** *
5145999 CAACTGAA
63 TGACTGAG
* * * * * * * * * * * *
5146007 ATTATATCACGAGTTAGAAATAA-AAAAATGGCCAGGATTAAATCTCTAGTCAAAAAATGAAAAC
1 ATTAAACCATGAGTCA-AAA-AATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5146071 GA-TAAGG
64 GACTGA-G
* * * * *
5146078 ATTAAACCACGAGTTAGAAAATGAAAATGACT-GAGATTAAACCACTAG-CTAGAAAAAGAAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTC-AGAAAATG-AAAA
*
5146141 TGACCGAG
63 TGACTGAG
* * * * * * * *
5146149 ATTAAACTATGAGTCAGAAAATGAAAACGATTGGGATTAAACCACAAGTCATAAAATGAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5146214 -TCA-
66 CTGAG
* * * * **
5146217 A--AAA--AT--G--AAAAAA--AAAATAATC-AAGACTAAACCACGAGTTAGAAAATGAATGTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5146271 AC-CAG
65 ACTGAG
* * * * * * * ** * * *
5146276 TTTGAATCTTGAGTCAATAAATGAAAAAGA-TTGAGATTAAAGTACGAGTTAAAAAATGAAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATG-AAAAT
*
5146340 AACATG-G
64 GAC-TGAG
** * * * * *
5146347 ATTAAACCATGAGTCTGAAAA-CAAAATCTACT-GTGATTAAACTACGAGTCAAAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAAT-GACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
* * *
5146410 AAGTGGG
64 GACTGAG
* * * * *
5146417 ATT-AAGCATTGATTCATAAAAA--AAAATGACCTA-GATTAAAGCACAAGCCAGAAAATGAAAA
1 ATTAAACCA-TGAGTCA-AAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAA
* *
5146478 CGACTAAG
63 TGACTGAG
* * * * *
5146486 ATTAAACCATGAGTCAGAAAATGGAAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAACT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAG-AAAATGAAAA-T
*
5146551 GAAT-AG
64 GACTGAG
* * * *
5146557 AATTAAACCATGAGTCAGAAAATGAAAATGACT-GGAATTAAACTACGAGTTAGAAAATGAAAAC
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAGG-ATTAAACCACGAGTCAGAAAATGAAAAT
*
5146621 GA-TCA-
64 GACTGAG
** * *
5146626 A--AAA--ATGA-AAAAAAAATG---AT---TGGGATTAAACCATGAGTCAGAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAG-AAAATGAAAATG
*
5146680 ACCGTA-
65 ACTG-AG
* * ** * * * *
5146686 ATTAAACCTTGAGTTAAAAAATGAAAACAACCCA-AAGTAAACCACAAGTCAGAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5146750 A-TTAGG
65 ACTGA-G
* ** * * * *
5146756 ATTAAACTACCCA-TCAAAAAAAGAAAAATGA-TAGGGATTAAACCATGAGTCAAAAAATAAAAA
1 ATTAAACCA-TGAGTCAAAAAATG-AAAATGACTA-GGATTAAACCACGAGTCAGAAAAT-GAAA
* *
5146819 ACGAC-CATG
62 ATGACTGA-G
** * * * *
5146828 A-TAAGACCACAAGTCAAAAAATAAAAATGACTATGATTAAACCAAGAGTCAAAAAAAAT-AAAA
1 ATTAA-ACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTC--AGAAAATGAAAA
**
5146891 T-ACTCCTG
63 TGACT-GAG
* * * * ** * * *
5146899 ATTAAACCATGTGTCAAAAAAATGAGAATGAGCCA-AATTAAACCATAAGTCAAAAAATGTAAAC
1 ATTAAACCATGAGTC-AAAAAATGAAAATGA-CTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* **
5146963 AACCAAG
64 GACTGAG
* ** * *
5146970 ATTAAACTACCAGTCGAAAAAA-GAAAAACGA-TCAGGATTAAACCATCG-GTTAGAAAATGAAA
1 ATTAAACCATGAGTC-AAAAAATG-AAAATGACT-AGGATTAAACCA-CGAGTCAGAAAATGAAA
5147032 ATGA-TCGAG
62 ATGACT-GAG
* * * * * * * *
5147041 ATTAAACTATGAGTCAGAAAATAAAAATGACT-GAGAATAAACCACAAGTTAGAAATTGAAAATT
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5147105 A-TAAG
65 ACTGAG
*** * ** ** * * **
5147110 -TT-----A--A---A--AAATGAAAATGAGAGGGATTAGACCGTGTCTTAGATAATGAAAACAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
** *
5147162 CCAAA
66 CTGAG
* * * ** * * * *
5147167 ATTAAATCACGAGTCAAAAAAAGAAAACAACAATGATTAAATCACGAATCAGAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5147232 C-CAGG
66 CTGA-G
** ** **** * *
5147237 ATTAAAATATGAGTC-AGGAAT-AAAA-G-CGTTAGGAATTAAACTGTAAGTTAAAAAATGAAAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGAC--TAGG-ATTAAACCACGAGTCAGAAAATGAAAA
** *
5147298 TGACCAAA
63 TGACTGAG
* ** ** * * *
5147306 ATTAAATCATGAGTCAAAAAACAAAAACAAC-CGAGATTAAACCACAAGTCAAAAAATGAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5147370 A-TCAAG
65 ACT-GAG
** * * * * * ** *
5147376 ATTAAACTGTGAGTCAAAAAATGAAAATGA-TCGAGACTAAACGACGAGTTAAAAAATGAATGTA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAAATG
*
5147440 AC-CAG
65 ACTGAG
* * * * ** * * * ** * * * **
5147445 TTTGAATCATAAGTCAATTAATAAAAAAGACTGGGATTAAAGTATGAGTTAAAAAATGAAAAACA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATG-AAAATG
5147510 ACCTG-G
65 A-CTGAG
* * ** * * *
5147516 ATTAAACCATGAGTTAGAAAACAAAAACT-ACT-GTGATTAAACTACAAGTCAGAAAATGAAAAC
1 ATTAAACCATGAGTCAAAAAATGAAAA-TGACTAG-GATTAAACCACGAGTCAGAAAATGAAAAT
* * *
5147579 AAGTGGG
64 GACTGAG
* * * * *
5147586 ATT-AAGCATTGAGTCAGAAAA--AAAATGACCTA-GATTAAAGCACGAGCCAAAAAAATGAAAA
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGA-CTAGGATTAAACCACGAGTC-AGAAAATGAAAA
*
5147647 TGACTAAG
63 TGACTGAG
* * * * * * **
5147655 ATTAAACCATGAGTTAGAAAATGGAAATGACCAGGATTAAATCACCAGTCAGAAAACAAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAA-TGAAAATG
*
5147720 AACAG-G
65 -ACTGAG
* * ** * * * *
5147726 ATTAAAACCATGGGTCAAAAAATGAAACA--ACCAAAATTAAATCATGAGTCAAAAAATGAAAAA
1 ATT-AAACCATGAGTCAAAAAATGAAA-ATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
* *
5147789 AAC-AAGG
64 GACTGA-G
* * * * * * * **
5147796 ATTAAAATCAACGAATC-AAAAATGAAAATTACCAGGATTAAATCATGAGTCAGGGAAT-AAAAT
1 ATT-AAA-CCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5147859 -AAT-AGG
64 GACTGA-G
* * * * * ** * * ** **
5147865 AATTAAATCGTAAGTCAAAAAATAAAAATGGCTAAAATTAAATCATGAGTCAGAAAACAAAAACA
1 -ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATG
*
5147930 ACAGAG
65 ACTGAG
* ** * *
5147936 ATTAAACCATAAGTCAAAAAATGAAAATGA-TCAGGATTAAACCGTGAGTCAAAAAATGAAAACG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAATG
5148000 A-TCGAG
65 ACT-GAG
* ** * * * *
5148006 ATTAAATCACAAGTCAGGAAAAATGAAAA--ACAACCGTCATTAAATCATGAGTCAGAGAAATGA
1 ATTAAACCATGAGTCA--AAAAATGAAAATGACTA--G-GATTAAACCACGAGTCAGA-AAATGA
*
5148069 AAATGA-TCGAT
60 AAATGACT-GAG
* * * * * *
5148080 ATTAAATCACAT--GTCAAAAATTAAAAACT-ACTTA-GAATAAATCATGAGTCAGAAAATCAAA
1 ATTAAA-C-CATGAGTCAAAAAATGAAAA-TGAC-TAGGATTAAACCACGAGTCAGAAAATGAAA
** ** *
5148141 ACCACCAAA
62 ATGACTGAG
* * * * * * * * * *
5148150 ACTAAATCACAT--GTCAGAGAATGAAAAATGAC-CGAAATTAAATCATGAGTTAAAAAATAAAA
1 ATTAAA-C-CATGAGTCAAAAAATG-AAAATGACTAG-GATTAAACCACGAGTCAGAAAATGAAA
*
5148212 ATGA-TCGGG
62 ATGACT-GAG
* ** * * * *
5148221 ATTAAACTATGAGTCAAAAAATGAAAATGACCCGGATTAAACTACGAGTTAGAAAATAAAAAAGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
5148286 -TCGAG
66 CT-GAG
*** * * * * * * * *
5148291 ATTAAATTGTGAATCAAAAAATGAAAACGACCAAGATTAAACCATGAGTCAAAAAATAAAAACGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
*
5148356 C-CAGG
66 CTGA-G
* * * * * * * *
5148361 ATTAAACCACGAGTCAAAAAATGAATA-CAATCGAGTTTAAATCACGAGTTA-AGAAATGAAAA-
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAG-GATTAAACCACGAGTCAGA-AAATGAAAAT
* * *
5148423 CAATCGGG
64 GACT-GAG
* * * * * * ** * * *
5148431 GTTAAATCATGAGTCAAGAAACGACAACGACTAATATTAAATCACGAATCAG-AAATAAAAAATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAAT-GAAAATG
* *
5148495 ACCGGG
65 ACTGAG
* * * * * * *
5148501 ATTAAATCACT-AGTCAAAAAATAAAAATGA-TAAAGATTAAACCACAAGTTAAAAAATAAAAAT
1 ATTAAACCA-TGAGTCAAAAAATGAAAATGACT-AGGATTAAACCACGAGTCAGAAAATGAAAAT
*
5148564 GACCGAG
64 GACTGAG
* * *
5148571 ATTAAACCACT-AG-CTAGAAAAA-GAAAAATGA-TCGAGATTAAA-CATTGAGTTAGAAAATGA
1 ATTAAACCA-TGAGTC-A-AAAAATG-AAAATGACTAG-GATTAAACCA-CGAGTCAGAAAATGA
* *
5148631 AAATGATTGGG
60 AAATGACTGAG
*
5148642 ATTAAACCACGAGTCAAAAAATGAAAATGA
1 ATTAAACCATGAGTCAAAAAATGAAAATGA
5148672 TCGAAAAATG
Statistics
Matches: 16629, Mismatches: 4151, Indels: 2959
0.70 0.17 0.12
Matches are distributed among these distances:
56 97 0.01
57 72 0.00
58 65 0.00
59 31 0.00
60 64 0.00
61 37 0.00
62 42 0.00
63 63 0.00
64 142 0.01
65 153 0.01
66 136 0.01
67 344 0.02
68 590 0.04
69 1857 0.11
70 7096 0.43
71 3979 0.24
72 1058 0.06
73 210 0.01
74 93 0.01
75 48 0.00
76 77 0.00
77 94 0.01
78 59 0.00
79 76 0.00
80 20 0.00
81 37 0.00
82 44 0.00
83 1 0.00
84 4 0.00
85 40 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (70 bp):
ATTAAACCATGAGTCAAAAAATGAAAATGACTAGGATTAAACCACGAGTCAGAAAATGAAAATGA
CTGAG
Found at i:5127288 original size:142 final size:141
Alignment explanation
Indices: 5127050--5127311 Score: 328
Period size: 142 Copynumber: 1.9 Consensus size: 141
5127040 TTAAACCGTA
* * * *
5127050 GTCAAAAAATAAAAATCAATTGAGATTAAACCAAAAGTTAGAAAATGAAAATGACTAGGATTAAA
1 GTCAAAAAATAAAAATCAATCGAGATTAAACCAAAACTCAGAAAATGAAAAGGACTAGGATTAAA
** * * **
5127115 CCAAGAGTCAAAAAATAAAAATGATCGAGATTAAACCACTTGTCAAAAAATGAAAAATGCCCATG
66 CCAAGAGTCAAAAAATAAAAACAACCAAGATT-AACCACGAGTCAAAAAATGAAAAATGCCCATG
5127180 ATTAAATCACCT
130 ATTAAATCACCT
* ** **
5127192 GTCAAAAAATGAAAAAT-GATCGAGATTAAACCACTACTCAGAAAATGAAAAGGACTATTATTAA
1 GTCAAAAAAT-AAAAATCAATCGAGATTAAACCAAAACTCAGAAAATGAAAAGGACTAGGATTAA
* * **
5127256 ATCATGAGTCAAAAAATGGAAACAACCAAGATTAACCACGAGTCAAAAAATGAAAA
65 ACCAAGAGTCAAAAAATAAAAACAACCAAGATTAACCACGAGTCAAAAAATGAAAA
5127312 TGATCAAGAT
Statistics
Matches: 100, Mismatches: 19, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
141 21 0.21
142 73 0.73
143 6 0.06
ACGTcount: A:0.53, C:0.14, G:0.13, T:0.20
Consensus pattern (141 bp):
GTCAAAAAATAAAAATCAATCGAGATTAAACCAAAACTCAGAAAATGAAAAGGACTAGGATTAAA
CCAAGAGTCAAAAAATAAAAACAACCAAGATTAACCACGAGTCAAAAAATGAAAAATGCCCATGA
TTAAATCACCT
Found at i:5128148 original size:107 final size:106
Alignment explanation
Indices: 5127981--5128184 Score: 241
Period size: 107 Copynumber: 1.9 Consensus size: 106
5127971 AACAACTGAA
* * * * *
5127981 ATTAAATCATGAGACAGAAAATGAAAACAACAGAGATTAAACCATGAGTTAGAAAATGAAAAATG
1 ATTAAATCATGAGACAAAAAAAGAAAACAACAGAGATAAAACCATGAGTCAAAAAATG-AAAATG
5128046 AATAAGAATAAACTAGGAGTCAAAAAATAAAAAATGATCGGG
65 AATAAGAATAAACTAGGAGTCAAAAAATAAAAAATGATCGGG
* * *
5128088 ATTAAA-CTATGAGTCAAAAAAAGAAAACGACTGAGATAAAACCACT-AGTCAAAAAATGAAAAT
1 ATTAAATC-ATGAGACAAAAAAAGAAAACAACAGAGATAAAACCA-TGAGTCAAAAAATGAAAAT
* * * * * *
5128151 GATTAGGATTAAACTATGAGTCAGAAAATGAAAA
64 GAATAAGAATAAACTAGGAGTCAAAAAATAAAAA
5128185 CAACTGGAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
106 34 0.42
107 46 0.57
108 1 0.01
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (106 bp):
ATTAAATCATGAGACAAAAAAAGAAAACAACAGAGATAAAACCATGAGTCAAAAAATGAAAATGA
ATAAGAATAAACTAGGAGTCAAAAAATAAAAAATGATCGGG
Found at i:5128277 original size:100 final size:99
Alignment explanation
Indices: 5128137--5128333 Score: 236
Period size: 100 Copynumber: 2.0 Consensus size: 99
5128127 AACCACTAGT
** * *
5128137 CAAAAAATGAAAATGATTAGGATTAAACTATGAGTCAGAAAATGAAAA-CAACTGGAATTAAATC
1 CAAAAAATGAAAACAATTAGGATTAAACTATGAGTCAGAAAATGAAAATCAACAGG-ATTAAACC
* *
5128201 ACAAGTCAAAAAATGAAAATGACCTAGATTAAACC
65 ACAAGTCAAAAAATGAAAATGACCCAAATTAAACC
* * ***
5128236 CAAAAAATGAAAGACAATTGGGATTAAACTAT-AGGTTAGAAAATGAAAATGGCCAGGATTAAAC
1 CAAAAAATGAAA-ACAATTAGGATTAAACTATGA-GTCAGAAAATGAAAATCAACAGGATTAAAC
**
5128300 CATGAGTCAAAAAATGAAAATGACCCAAATTAAA
64 CACAAGTCAAAAAATGAAAATGACCCAAATTAAA
5128334 ACCATAAGTA
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
99 13 0.16
100 66 0.80
101 3 0.04
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.20
Consensus pattern (99 bp):
CAAAAAATGAAAACAATTAGGATTAAACTATGAGTCAGAAAATGAAAATCAACAGGATTAAACCA
CAAGTCAAAAAATGAAAATGACCCAAATTAAACC
Found at i:5128557 original size:101 final size:104
Alignment explanation
Indices: 5128433--5128631 Score: 278
Period size: 101 Copynumber: 1.9 Consensus size: 104
5128423 AAAATGACTA
* * * * **
5128433 GGATTAAACCACGAGTTAGAAAATAAAAACGATCATGATTAAATTATGAGTCAAAAAAGAAAAAC
1 GGATGAAACCACGAGTCAAAAAATAAAAACAATCATGATTAAACCATGAGTCAAAAAAGAAAAAC
5128498 GACCAGGATTAAACCACTAG-TA-AAAAAAAAATCACCG
66 GACCAGGATTAAACCACTAGTTAGAAAAAAAAATCACCG
* * ** *
5128535 GGATGAAACCAC-AGTCAAAAAATGAAAATAATTGTGATTAAACCATGAGTCAAAAAAGAAAAAT
1 GGATGAAACCACGAGTCAAAAAATAAAAACAATCATGATTAAACCATGAGTCAAAAAAGAAAAAC
5128599 GACCAGGATTAAACCACTAGTTAGAAAAAAAAA
66 GACCAGGATTAAACCACTAGTTAGAAAAAAAAA
5128632 ACAACTAAGA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
101 62 0.74
102 13 0.15
103 9 0.11
ACGTcount: A:0.54, C:0.14, G:0.15, T:0.18
Consensus pattern (104 bp):
GGATGAAACCACGAGTCAAAAAATAAAAACAATCATGATTAAACCATGAGTCAAAAAAGAAAAAC
GACCAGGATTAAACCACTAGTTAGAAAAAAAAATCACCG
Found at i:5128684 original size:171 final size:175
Alignment explanation
Indices: 5128292--5128684 Score: 433
Period size: 171 Copynumber: 2.3 Consensus size: 175
5128282 AAATGGCCAG
*
5128292 GATTAAACCATGAGTCAAAAAATGAAAATGACCCAAATTAAAACCATAAGTAAGAAAATAAAACC
1 GATTAAACCATGAGTC-AAAAATGAAAATGACCAAAATT-AAACCATAAGTAAGAAAATAAAACC
* * * *
5128357 CATCGGGATTAAACCACCAATCAGAAAAAGAAAGATGACCGGGATTAAACCATAAATAAAAAAAT
64 CACCGGGATGAAACCACCAATCAGAAAAAGAAAGATAACCGGGATTAAACCATAAATAAAAAAAG
* * * *
5128422 AAAAATGACTAGGATTAAACCACGAGTTAGAAAATAAAAACGATCAT
129 AAAAATGACCAGGATTAAACCACGAGTTAGAAAAAAAAAACAATCAA
** * * ** *
5128469 GATTAAATTATGAGTCAAAAAAGAAAAACGACCAGGATTAAACCACT-AGTAA-AAAA-AAAA-T
1 GATTAAACCATGAGTCAAAAATG-AAAATGACCAAAATTAAACCA-TAAGTAAGAAAATAAAACC
* ** * * * *
5128530 CACCGGGATGAAACCA-CAGTCA-AAAAATGAAA-ATAATTGTGATTAAACCATGAGTCAAAAAA
64 CACCGGGATGAAACCACCAATCAGAAAAA-GAAAGATAACCGGGATTAAACCATAAATAAAAAAA
*
5128592 GAAAAATGACCAGGATTAAACCACTAGTTAGAAAAAAAAAACAA-CTAA
128 GAAAAATGACCAGGATTAAACCACGAGTTAGAAAAAAAAAACAATC-AA
* *
5128640 GATTAAACCATAAGTCAGAAAATGAAAATGATCAAAATTAAACCA
1 GATTAAACCATGAGTCA-AAAATGAAAATGACCAAAATTAAACCA
5128685 GGAGTTAGGA
Statistics
Matches: 179, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
170 1 0.01
171 99 0.55
172 14 0.08
173 14 0.08
174 4 0.02
175 4 0.02
176 17 0.09
177 26 0.15
ACGTcount: A:0.55, C:0.15, G:0.13, T:0.17
Consensus pattern (175 bp):
GATTAAACCATGAGTCAAAAATGAAAATGACCAAAATTAAACCATAAGTAAGAAAATAAAACCCA
CCGGGATGAAACCACCAATCAGAAAAAGAAAGATAACCGGGATTAAACCATAAATAAAAAAAGAA
AAATGACCAGGATTAAACCACGAGTTAGAAAAAAAAAACAATCAA
Found at i:5128873 original size:176 final size:175
Alignment explanation
Indices: 5128552--5128878 Score: 399
Period size: 176 Copynumber: 1.9 Consensus size: 175
5128542 ACCACAGTCA
* * **
5128552 AAAAATGAAAATAATTGTGATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
1 AAAAATGAAAACAATCGCAATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
** * * * *
5128617 AGTTAGAAAAAAAAAACAACTAAGATTAAACCATAAGTCAGAAAATGAAAATGATCAAAATTAAA
66 AGCCAGAAAAAAAAAACAACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATCAAAATTAAA
*
5128682 CCAGGAGTTAGGAAATGAAAATGATCAAGATTAAACAACGGGCCG
131 CCAGGAGTCAGGAAATGAAAATGATCAAGATTAAACAACGGGCCG
* * **
5128727 AAAAATGAAAACAATCGCAATTAAAACCATGAGTTAAAAAAGAAAAATGATCAGGATTAAATGAC
1 AAAAATGAAAACAATCGCAATT-AAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCAC
* * * **
5128792 TAGCCA-AAAAAGAAAAA-AGACCGAGATTAAACTACGAGTCAAAAAATGAAAACGA-CTAGGAT
65 TAGCCAGAAAAA-AAAAACA-ACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATC-AAAAT
* *
5128854 TAAACTATGAGTCAGGAAATGAAAA
127 TAAACCAGGAGTCAGGAAATGAAAA
5128879 CAATTGAGAT
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
175 25 0.20
176 101 0.80
ACGTcount: A:0.54, C:0.12, G:0.16, T:0.17
Consensus pattern (175 bp):
AAAAATGAAAACAATCGCAATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
AGCCAGAAAAAAAAAACAACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATCAAAATTAAA
CCAGGAGTCAGGAAATGAAAATGATCAAGATTAAACAACGGGCCG
Found at i:5128932 original size:176 final size:175
Alignment explanation
Indices: 5128552--5128932 Score: 385
Period size: 176 Copynumber: 2.2 Consensus size: 175
5128542 ACCACAGTCA
* * *
5128552 AAAAATGAAAATAATTGTGATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
1 AAAAATGAAAACAATCGCGATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
** * * * *
5128617 AGTTAGAAAAAAAAAACAACTAAGATTAAACCATAAGTCAGAAAATGAAAATGATCAAAATTAAA
66 AGCCAGAAAAAAAAAACAACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATCAAAATTAAA
* ** *
5128682 CCAGGAGTTAGGAAATGAAAATGATCAAGATTAAACAACGGGCCG
131 CCAGGAGTCAGGAAATGAAAACAATCAAGATTAAACAACGGGCAG
* * * **
5128727 AAAAATGAAAACAATCGCAATTAAAACCATGAGTTAAAAAAGAAAAATGATCAGGATTAAATGAC
1 AAAAATGAAAACAATCGCGATT-AAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCAC
* * * **
5128792 TAGCCA-AAAAAGAAAAA-AGACCGAGATTAAACTACGAGTCAAAAAATGAAAACGA-CTAGGAT
65 TAGCCAGAAAAA-AAAAACA-ACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATC-AAAAT
* * ** * **
5128854 TAAACTATGAGTCAGGAAATGAAAACAATTGAGATTAAACTACGAGTTAG
127 TAAACCAGGAGTCAGGAAATGAAAACAATCAAGATTAAACAACG-GGCAG
*
5128904 -AAAATGAAAATCGATCAG-GATTAAACCAT
1 AAAAATGAAAA-CAATC-GCGATTAAACCAT
5128933 AAGTAATAAA
Statistics
Matches: 167, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
175 25 0.15
176 132 0.79
177 9 0.05
178 1 0.01
ACGTcount: A:0.53, C:0.12, G:0.16, T:0.18
Consensus pattern (175 bp):
AAAAATGAAAACAATCGCGATTAAACCATGAGTCAAAAAAGAAAAATGACCAGGATTAAACCACT
AGCCAGAAAAAAAAAACAACCAAGATTAAACCACAAGTCAAAAAATGAAAACGATCAAAATTAAA
CCAGGAGTCAGGAAATGAAAACAATCAAGATTAAACAACGGGCAG
Found at i:5128952 original size:28 final size:29
Alignment explanation
Indices: 5128906--5128989 Score: 134
Period size: 28 Copynumber: 2.9 Consensus size: 29
5128896 CGAGTTAGAA
5128906 AATGAAAATCGATCAGGATTAAACCATAAGT
1 AATGAAAAT--ATCAGGATTAAACCATAAGT
*
5128937 AAT-AAAATATCAGGATTAAACCACAAGT
1 AATGAAAATATCAGGATTAAACCATAAGT
5128965 AATGAAAATATCAGGATTAAACCAT
1 AATGAAAATATCAGGATTAAACCAT
5128990 GAGTTAAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.44
29 20 0.40
30 5 0.10
31 3 0.06
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (29 bp):
AATGAAAATATCAGGATTAAACCATAAGT
Found at i:5129941 original size:31 final size:32
Alignment explanation
Indices: 5129872--5129942 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
5129862 TTATGAGTAA
* *
5129872 AAAAATAAAACTGATTGGGATTAAACAACTAGT
1 AAAAA-AAAACTGATTGGGATTAAACAACAAAT
*
5129905 AAAAAAAAA-TGATTGGGATTAAACCACAAAT
1 AAAAAAAAACTGATTGGGATTAAACAACAAAT
*
5129936 CAAAAAA
1 AAAAAAA
5129943 TTAAAACAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 25 0.74
32 4 0.12
33 5 0.15
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.20
Consensus pattern (32 bp):
AAAAAAAAACTGATTGGGATTAAACAACAAAT
Found at i:5132480 original size:177 final size:175
Alignment explanation
Indices: 5132263--5132725 Score: 515
Period size: 177 Copynumber: 2.6 Consensus size: 175
5132253 AAATGATCGA
*
5132263 GATTAAACTATGAGTCAAAAAATGAAAATGA-TAGAAATTAAATCATGAGTCAGAGAATAAAAAT
1 GATTAAACTATGAGTCAAAAAATGAAAATGACTA-AAATTAAATCATGAGTCAGAAAATAAAAAT
* * *
5132327 GACCAAAATTAAACCAAGTGTCAGAGAATGAAAACGATCA-GAATTAAACCACAAGTTAGAAAAT
65 GATCAAGATTAAACCAAGTGTCAGAAAATGAAAACGA-CAGGAATTAAACCACAAGTTAGAAAAT
* *
5132391 GAAAATGAC-AGGGATTAAACTACGTGTTAAAAAAATGA-AAAATGAATGG
129 GAAAATGACTA-GGATTAAACCACGAG-T-AAAAAAT-ACAAAATGAATGG
* ** * * *
5132440 GATTAAACTAAGAGTCAAAAAATGAAAATGACTAAAATTAAATCACAAGTTAGAAAATGAAAACG
1 GATTAAACTATGAGTCAAAAAATGAAAATGACTAAAATTAAATCATGAGTCAGAAAATAAAAATG
* * *
5132505 ATCAAGATTAAACCACAAGT-T-AGAAAATGAAAATGACAGGGATTAAACTACAAGTTAGAAAAT
66 ATCAAGATTAAA-C-CAAGTGTCAGAAAATGAAAACGACAGGAATTAAACCACAAGTTAGAAAAT
* * * * *
5132568 GAAAATGACTAGGATTAAGCCATGAGTCAAAAATACAAAATTACTGG
129 GAAAATGACTAGGATTAAACCACGAGTAAAAAATACAAAATGAATGG
* * * * * *
5132615 GATTAAATTATGAGTCAGAGAAATAAAAATGACCAATATTAAATCATGAGTCAAAAAATAAAAAT
1 GATTAAACTATGAGTCA-AAAAATGAAAATGACTAAAATTAAATCATGAGTCAGAAAATAAAAAT
* * * * * *
5132680 GATCGAGATTAAACCATGAGTCAAAAAATGAAAATGATAGGAATTA
65 GATCAAGATTAAACCAAGTGTCAGAAAATGAAAACGACAGGAATTA
5132726 GATTAGTAGT
Statistics
Matches: 239, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
174 4 0.02
175 32 0.13
176 73 0.31
177 120 0.50
178 5 0.02
179 5 0.02
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (175 bp):
GATTAAACTATGAGTCAAAAAATGAAAATGACTAAAATTAAATCATGAGTCAGAAAATAAAAATG
ATCAAGATTAAACCAAGTGTCAGAAAATGAAAACGACAGGAATTAAACCACAAGTTAGAAAATGA
AAATGACTAGGATTAAACCACGAGTAAAAAATACAAAATGAATGG
Found at i:5134832 original size:212 final size:210
Alignment explanation
Indices: 5134438--5134899 Score: 521
Period size: 212 Copynumber: 2.2 Consensus size: 210
5134428 AACGATCGAA
* * * * * *
5134438 ATTAAACCATAAGTCAAAGAATGAAAAATGACTGAGATT-AATCTACGAGTCA-A-AAATGAAAA
1 ATTAAATCATGAGTCAAAAAAT-AAAAATGATTGAGATTAAAT-TATGAGTTAGAGAAAT-AAAA
* ** * *
5134500 A-GATCGAA-ATTAAATCATGAGTTAGAGAATAAAAATGATTGAAATTAAACAAGAGTCAAAGAA
63 ATGA-CTAATATTAAATCACAAGTTAGAAAATAAAAATGATCGAAATTAAACAAGAGTCAAAGAA
* ** ** *
5134563 TGAAAATGATTGAAATTAAACCATGAGTCAAAAAATGAAAATGATAGGGATTAAACCAC-GAGTC
127 TGAAAATGATGGAAATTAAACCAACAGTCAAAAAATGAAAATGATAGAAAATAAACCACAG-GTC
5134627 AAAAAATGAAAAAGAC-TGTG
191 AAAAAATGAAAAAGACATG-G
5134647 ATTAAATCATGAGTCAAAAAATAAAAAATGATT-AGGATTAAATTATGAGTTAGAGAAATAAAAA
1 ATTAAATCATGAGTCAAAAAAT-AAAAATGATTGA-GATTAAATTATGAGTTAGAGAAATAAAAA
* * *
5134711 TGACTAATATTAAATCACAAGTTAGAAAATAAAAATGATCGAGATTAAACCACGAGTTAGAA-AA
64 TGACTAATATTAAATCACAAGTTAGAAAATAAAAATGATCGAAATTAAA-CAAGAGTCA-AAGAA
* * *
5134775 TGAAAATGATGGGAATTAGATCAACAGTCAAAAAATGAAAATGACT-GAAAATAAACCACAGGTC
127 TGAAAATGATGGAAATTAAACCAACAGTCAAAAAATGAAAATGA-TAGAAAATAAACCACAGGTC
*
5134839 AAAAAATGAAAATGACATGG
191 AAAAAATGAAAAAGACATGG
* *
5134859 ATTAAATCATGAGTTAGAAAATAAAAATGATTGAGATTAAA
1 ATTAAATCATGAGTCAAAAAATAAAAATGATTGAGATTAAA
5134900 ACATGAGTCA
Statistics
Matches: 214, Mismatches: 27, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
208 1 0.00
209 39 0.18
210 12 0.06
211 59 0.28
212 97 0.45
213 6 0.03
ACGTcount: A:0.53, C:0.08, G:0.16, T:0.22
Consensus pattern (210 bp):
ATTAAATCATGAGTCAAAAAATAAAAATGATTGAGATTAAATTATGAGTTAGAGAAATAAAAATG
ACTAATATTAAATCACAAGTTAGAAAATAAAAATGATCGAAATTAAACAAGAGTCAAAGAATGAA
AATGATGGAAATTAAACCAACAGTCAAAAAATGAAAATGATAGAAAATAAACCACAGGTCAAAAA
ATGAAAAAGACATGG
Found at i:5135100 original size:317 final size:317
Alignment explanation
Indices: 5134403--5135237 Score: 766
Period size: 317 Copynumber: 2.6 Consensus size: 317
5134393 AATGATCGGG
* * * * * * *
5134403 ATTAAATCACAAGTTAGAAAATGAAAACGATCGAAATTAAACCATAAGTCAAAGAATGAAAAATG
1 ATTAAACCACAAGTTAGAAAATAAAAATGACCGAGATTAAACCACAAGTCAAAAAATG-AAAATG
* * * * * ** * * *
5134468 A-CTGAGATTAATCTACGAGTC-AAAAATGAAAAAGATC-GAAATTAAATCATGAGTTAGAGAAT
65 ATCAG-GATTAAACAACGAGTCAAAAAATGAAAATGATCAGAAA-TAAACCACAAGTCAAAAAAT
* ** * * * * *
5134530 AAAAATGA-TTGAAATTAAA-CAAGAGTCA-AAGAATGAAAATGATTGAAATTAAACCATGAGTC
128 GAAAACAACTCG-AATTAAACCATGAGTCAGAA-AATAAAAATGATTGAGATTAAAACATGAGTC
* *** * * *
5134592 AAAAAATGAAAATGATAGGGATTAAACCACGAGTCAAAAAATGAAAAAGACTGTGATTAAATCAT
191 AAAAAATGAAAACGATACAAATTAAACCAAGAGTCAAAAAATGAAAAAGACTGGGATAAAATCAT
* * ** * *
5134657 GAGTCAAAAAATAAAAAATGATTAGGATTAAATTATGAGTTAGAGAAATAAAAATGACTAAT
256 GAGTCAAAAAATAAAAAATGATTAGAATTAAACTACAAATTAGAGAAATAAAAACGACTAAT
* * * * *
5134719 ATTAAATCACAAGTTAGAAAATAAAAATGATCGAGATTAAACCACGAGTTAGAAAATGAAAATGA
1 ATTAAACCACAAGTTAGAAAATAAAAATGACCGAGATTAAACCACAAGTCAAAAAATGAAAATGA
* * * *
5134784 T-GGGAATTAGATCAAC-AGTCAAAAAATGAAAATGA-CTGAAAATAAACCACAGGTCAAAAAAT
66 TCAGG-ATTA-AACAACGAGTCAAAAAATGAAAATGATCAG-AAATAAACCACAAGTCAAAAAAT
** * * *
5134846 GAAAATGACAT-GGATTAAATCATGAGTTAGAAAATAAAAATGATTGAGATTAAAACATGAGTCA
128 GAAAACAAC-TCGAATTAAACCATGAGTCAGAAAATAAAAATGATTGAGATTAAAACATGAGTCA
* * *
5134910 GAAAATGAAAACGATCCAAATTAAACCAAGAGTCAAAAAATGAAAACGACTGGGATAAAATCATG
192 AAAAATGAAAACGATACAAATTAAACCAAGAGTCAAAAAATGAAAAAGACTGGGATAAAATCATG
* * * * * *
5134975 AGTTAAAACATAAACAATGATTCA-AATTAAACTACAAATTAGA-AAATGAATACGA-TCAGGT
257 AGTCAAAAAATAAAAAATGATT-AGAATTAAACTACAAATTAGAGAAATAAAAACGACT-A-AT
** * *
5135036 -TTAAACCATGAGTTA-AGAAATGAAAATGACCGAGATTAAATCACAAGTCAAAAAATGAAAAAT
1 ATTAAACCACAAGTTAGA-AAATAAAAATGACCGAGATTAAACCACAAGTCAAAAAATG-AAAAT
* * * * * *
5135099 GATCAGGATTAAACAACGAGTTAAAAAATGAAAATGATCAGGATTAAACCACAAGTTAGAAAGTG
64 GATCAGGATTAAACAACGAGTCAAAAAATGAAAATGATCAGAAATAAACCACAAGTCAAAAAATG
* *
5135164 AAAACAACTCGAATTAAACCATGAGTCAGAAAATAAAAATGATCGAGATT-AAACTAGGAGTCAA
129 AAAACAACTCGAATTAAACCATGAGTCAGAAAATAAAAATGATTGAGATTAAAAC-ATGAGTCAA
5135228 AAAATGAAAA
193 AAAATGAAAA
5135238 TGAAAAGAAA
Statistics
Matches: 425, Mismatches: 74, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
314 1 0.00
315 19 0.04
316 161 0.38
317 236 0.56
318 8 0.02
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.21
Consensus pattern (317 bp):
ATTAAACCACAAGTTAGAAAATAAAAATGACCGAGATTAAACCACAAGTCAAAAAATGAAAATGA
TCAGGATTAAACAACGAGTCAAAAAATGAAAATGATCAGAAATAAACCACAAGTCAAAAAATGAA
AACAACTCGAATTAAACCATGAGTCAGAAAATAAAAATGATTGAGATTAAAACATGAGTCAAAAA
ATGAAAACGATACAAATTAAACCAAGAGTCAAAAAATGAAAAAGACTGGGATAAAATCATGAGTC
AAAAAATAAAAAATGATTAGAATTAAACTACAAATTAGAGAAATAAAAACGACTAAT
Found at i:5135283 original size:32 final size:31
Alignment explanation
Indices: 5135245--5135310 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 31
5135235 AAATGAAAAG
* *
5135245 AAAAATGACTGAGATTAAACCACA-AGTCAGAA
1 AAAAATGACTAAAATTAAACCA-AGAGTCA-AA
5135277 AAAAATGACTAAAATTAAACCAAGAGTCAAA
1 AAAAATGACTAAAATTAAACCAAGAGTCAAA
5135308 AAA
1 AAA
5135311 TAAAAAACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 6 0.19
32 25 0.81
ACGTcount: A:0.59, C:0.14, G:0.12, T:0.15
Consensus pattern (31 bp):
AAAAATGACTAAAATTAAACCAAGAGTCAAA
Found at i:5135783 original size:138 final size:138
Alignment explanation
Indices: 5135539--5135788 Score: 306
Period size: 138 Copynumber: 1.8 Consensus size: 138
5135529 TGATCGAAAT
* * * ** * * *
5135539 TAAACCGTAAGTTAGAAAATGAAAACAACTAGGATTAAATAATGAGTCTGAAAATGAAAATGATC
1 TAAACCGTAAGTCAAAAAATGAAAACAACTAGGATTAAACAACAAGTCAGAAAATCAAAATGATA
* ***
5135604 TGGATTAAACCACAAGTCTAAAAATAAAAATGACTGGGATTAAACCATGAGTCCAAAAAGAAATG
66 GGGATTAAACCACAAGTCTAAAAATAAAAATGACCAAGATTAAACCATGAGTCCAAAAAGAAATG
5135669 ATAGGGAC
131 ATAGGGAC
* ** *
5135677 TAAACCGTGAGTCAAAAAATGAAAACGGCTAGGATTAAACCACAAGTCAGAAAATCAAAATGATA
1 TAAACCGTAAGTCAAAAAATGAAAACAACTAGGATTAAACAACAAGTCAGAAAATCAAAATGATA
* *
5135742 GGGATTAAACCATGAA-TC-AAAAGATGAAAATGACCAAGATTAAACCA
66 GGGATTAAACCA-CAAGTCTAAAA-ATAAAAATGACCAAGATTAAACCA
5135789 CAAGTTAGAT
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
137 4 0.04
138 86 0.93
139 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (138 bp):
TAAACCGTAAGTCAAAAAATGAAAACAACTAGGATTAAACAACAAGTCAGAAAATCAAAATGATA
GGGATTAAACCACAAGTCTAAAAATAAAAATGACCAAGATTAAACCATGAGTCCAAAAAGAAATG
ATAGGGAC
Found at i:5138595 original size:209 final size:209
Alignment explanation
Indices: 5138037--5138612 Score: 529
Period size: 209 Copynumber: 2.7 Consensus size: 209
5138027 AGAGATAAGT
* * * * * * * *
5138037 AATGAAAACGATCTAGATTAAATCATGAGTCAAGAAATGAAAACGACCGTGATTAAATCATAAGT
1 AATGAAAATGATCAAGATTAAACCATGAGT-AAGAAA-AAAAATGA-CATGATTAAACCATGAGT
* * * * * *
5138102 CAAAAAATAAAAACGATCAAAATTAAATTAAGAGTAAAAAAATAAGAAAACGCTCAGAATTAAAC
63 CAAAAAATAAAAATGATCAAAATTAAATTATGAGTAAAAAAATAAG--AATGATTAGGATTAAAC
* * *
5138167 CATGAGTCAAAAAAATGAAAGTGA-CATAGATTAAACAACTAGTCAAAAAAAGAAAAACAATCGA
126 CACGAGT-TAAAAAATGAAAATGATCATAGATTAAACAACTAGTCAAAAAAAGAAAAACAATCGA
* *
5138231 AATTAAACTACGAGTCAAAA
190 AATTAAACCACAAGTCAAAA
* * * **
5138251 AATGAAAATGACCCAGATTAAACCA-CA-TCCGAAAATGAAAATGACAATGATTAAACCATGAGT
1 AATGAAAATGATCAAGATTAAACCATGAGTAAGAAAA--AAAATGAC-ATGATTAAACCATGAGT
* * ** * * * * * * *
5138314 CAGAAAAAGAAAAATGACCAGGATTAAATCATGAGTCAAAAAATAAAAATGAATAAGATTCAATC
63 CA-AAAAATAAAAATGATCAAAATTAAATTATGAGTAAAAAAATAAGAATGATTAGGATTAAACC
* * * ** *
5138379 GCGAGTTAAAAAATGAAAATGATCGTA-ATTAAACCA-TAAGTCAAAAAACA-AAAATGACTC-A
127 ACGAGTTAAAAAATGAAAATGATCATAGATTAAACAACT-AGTCAAAAAA-AGAAAAACAATCGA
* *
5138440 GATTAAACCACAAGTCAGAA
190 AATTAAACCACAAGTCAAAA
*
5138460 AATGAAAATGATCAAGATTAAACCATGAGTTAGAAAAAAAATGATCATGATTAAACCATGAGTCA
1 AATGAAAATGATCAAGATTAAACCATGAGTAAGAAAAAAAATGA-CATGATTAAACCATGAGTCA
* * *
5138525 AAAAATTAAAATGATCAAAATTAAATTATGCA-TAAAAAAATGAAGGATGATTGGGATTAAACCA
65 AAAAATAAAAATGATCAAAATTAAATTATG-AGTAAAAAAAT-AAGAATGATTAGGATTAAACCA
*
5138589 CGAGTTAGAAAATGAAAATGATCA
128 CGAGTTAAAAAATGAAAATGATCA
5138613 GGAATAACCC
Statistics
Matches: 286, Mismatches: 64, Indels: 29
0.75 0.17 0.08
Matches are distributed among these distances:
208 32 0.11
209 104 0.36
210 41 0.14
211 29 0.10
212 23 0.08
213 36 0.13
214 21 0.07
ACGTcount: A:0.54, C:0.12, G:0.14, T:0.20
Consensus pattern (209 bp):
AATGAAAATGATCAAGATTAAACCATGAGTAAGAAAAAAAATGACATGATTAAACCATGAGTCAA
AAAATAAAAATGATCAAAATTAAATTATGAGTAAAAAAATAAGAATGATTAGGATTAAACCACGA
GTTAAAAAATGAAAATGATCATAGATTAAACAACTAGTCAAAAAAAGAAAAACAATCGAAATTAA
ACCACAAGTCAAAA
Found at i:5138655 original size:209 final size:208
Alignment explanation
Indices: 5138086--5139235 Score: 469
Period size: 209 Copynumber: 5.5 Consensus size: 208
5138076 AAAACGACCG
* * * * * * *
5138086 TGATTAAATCATAAGTCA-AAAAATAAAAACGATCAAAATTAAATTAAGAGTAAAAAAATAAGAA
1 TGATTAAACCATGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAAT-A-AA
* * * * * * ** *
5138150 AACG-CTCAGAATTAAACCATGAGTCAAAAAAATGAAAGTGA-CATAGATTAAACAACT-AGTCA
64 AATGAATAAG-ATTAAACCACGAGT-TAAAAAATGAAAATGATCGGA-ATTAAACCA-TAAGTCA
** * * * *
5138212 AAAAA-AGAAAAACAATCGAAATTAAACTACGAGTCAAAAAATGAAAATGACCCAGATTAAACCA
125 AAAAACA-AAAATGACTC-AGATTAAACCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCA
*
5138276 CATCCGAAAATGAAAATGACAA
188 CATCAGAAAA-GAAAATGACAA
** *
5138298 TGATTAAACCATGAGTCAGAAAAAGAAAAATGACCAGGATTAAATCATGAGTCAAAAAATAAAAA
1 TGATTAAACCATGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAATAAAAA
* * * *
5138363 TGAATAAGATTCAATCGCGAGTTAAAAAATGAAAATGATCGTAATTAAACCATAAGTCAAAAAAC
66 TGAATAAGATTAAACCACGAGTTAAAAAATGAAAATGATCGGAATTAAACCATAAGTCAAAAAAC
* * * * *
5138428 AAAAATGACTCAGATTAAACCACAAGTCAGAAAATGAAAATGATCAAGATTAAACCATGAGTTAG
131 AAAAATGACTCAGATTAAACCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCA-CA-TCAG
5138493 AAAA-AAAATGATC-A
194 AAAAGAAAATGA-CAA
** * * *
5138507 TGATTAAACCATGAGTCA-AAAAATTAAAATGATCAAAATTAAATTATGCA-TAAAAAAATGAAG
1 TGATTAAACCATGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATG-AGTAAAAAAAT-AAA
* * ** * * ** * *
5138570 GATGATTGGGATTAAACCACGAGTTAGAAAATGAAAATGATCAGGAA-TAACCCATGCGTGAGAA
64 AATGAATAAGATTAAACCACGAGTTAAAAAATGAAAATGATC-GGAATTAAACCATAAGTCAAAA
** * * * * ***
5138634 AATGAAAATG-TTCAGGATTAAATCATGAGTCAAAAAATGAAAATAACTGGGATTAAACCACTAG
128 AACAAAAATGACTCA-GATTAAACCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCAC-A-
* * *
5138698 TCAAAAAAAGGAAAATAATCGA
190 TC-AGAAAA-GAAAATGA-CAA
* * * * * * * ** * * *
5138720 -GATTAAACCACCG-GTCAG-AAAATAAAGACGATCGACATTAAGCCACGAGTCAAAAAATGAAA
1 TGATTAAACCA-TGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAATAAAA
* * * * * * *
5138782 AT-AACCT-AGATTAAACCATGAGTCAAAAAATAAAAATAATTGTG-ATTAATCCATGAGTCAAA
65 ATGAA--TAAGATTAAACCACGAGTTAAAAAATGAAAATGATCG-GAATTAAACCATAAGTCAAA
** * * * * **
5138844 AAATGAAAATG-CCCAAAATTAAACCAC-ATGTTAGAAAAA-GAAAAATGATCGGGATTAAACCA
127 AAACAAAAATGACTC-AGATTAAACCACGA-GTCA-AAAAATG-AAAATGACCAAGATTAAACCA
*
5138906 TCAGTTCA-AAATTGAAAATGATCAA
188 -CA--TCAGAAA-AGAAAATGA-CAA
* * ** *** * * *
5138931 -GATTAAACCACT-AG-C--CAAAA-AAAAATGATCAGGATTAAATCACCCGTCAGAAAATGAAA
1 TGATTAAACCA-TGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAATAAAA
** * * * * * * * **
5138990 ACCATTGAGATTAAACCACAAGTCAAAAAATGAAAATGAGC-CAGATTAAACCATGAGTCCGAAA
65 ATGAATAAGATTAAACCACGAGTTAAAAAATGAAAATGATCGGA-ATTAAACCATAAGTCAAAAA
* * * * * *
5139054 ATAAAAATGA-TCGAGATTAAACCATGATTCAAAAAA-GAAAAATGATCGAGATTAAACCATAAG
129 ACAAAAATGACTC-AGATTAAACCACGAGTCAAAAAATG-AAAATGACCAAGATTAAACCA-CA-
* *
5139117 TCAAAAAATGAACATGAC--
190 TCAGAAAA-GAAAATGACAA
* * * ***** * *
5139135 TGGAATTAAACGATGAGTCAGAAAATG-AAAACGATTGGGATTAAACCATGAGTCAAAAAATAAA
1 T-G-ATTAAACCATGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAATAAA
* * * *
5139199 AA-CAATTAGAATTAAACCATGAGTCAAAAAATGAAAA
64 AATGAATAAG-ATTAAACCACGAGTTAAAAAATGAAAA
5139236 ATGACTATGA
Statistics
Matches: 727, Mismatches: 161, Indels: 102
0.73 0.16 0.10
Matches are distributed among these distances:
206 6 0.01
207 50 0.07
208 132 0.18
209 174 0.24
210 112 0.15
211 118 0.16
212 97 0.13
213 38 0.05
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.20
Consensus pattern (208 bp):
TGATTAAACCATGAGTCAGAAAAAGAAAAATGACCAAAATTAAATCATGAGTAAAAAAATAAAAA
TGAATAAGATTAAACCACGAGTTAAAAAATGAAAATGATCGGAATTAAACCATAAGTCAAAAAAC
AAAAATGACTCAGATTAAACCACGAGTCAAAAAATGAAAATGACCAAGATTAAACCACATCAGAA
AAGAAAATGACAA
Found at i:5139293 original size:33 final size:33
Alignment explanation
Indices: 5139256--5139323 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
5139246 TTAAATAACG
* * *
5139256 AGTCAAAGAAATAAAAAAGATTGGTATTAAATC
1 AGTCAAAAAAACAAAAAAGACTGGTATTAAATC
5139289 AGTCAAAAAAACAAAAAAGACTGGTATTAAATC
1 AGTCAAAAAAACAAAAAAGACTGGTATTAAATC
5139322 AG
1 AG
5139324 AAGTCAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (33 bp):
AGTCAAAAAAACAAAAAAGACTGGTATTAAATC
Found at i:5139519 original size:29 final size:31
Alignment explanation
Indices: 5139452--5139513 Score: 81
Period size: 34 Copynumber: 1.9 Consensus size: 31
5139442 AAAATGACAT
5139452 GGATTAAATCATGAGTCAAGAAATGAAATGAC
1 GGATTAAATCATGAGTCAAGAAATGAAA-GAC
5139484 TGGGATTAAATCATGAGTC-AGAAAATGAAA
1 --GGATTAAATCATGAGTCAAG-AAATGAAA
5139514 ACGATTGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
33 2 0.07
34 25 0.93
ACGTcount: A:0.47, C:0.08, G:0.23, T:0.23
Consensus pattern (31 bp):
GGATTAAATCATGAGTCAAGAAATGAAAGAC
Found at i:5140281 original size:69 final size:71
Alignment explanation
Indices: 5140143--5140292 Score: 178
Period size: 69 Copynumber: 2.1 Consensus size: 71
5140133 CACAATTTAG
*
5140143 AAAATGAAAATGACCGGGAGTAAACCACCAGTCAAAAAAATAAAAACAACCAGGATTAAAACATT
1 AAAATGAAAATGACCGGGAGTAAACCACCAGTCAAAAAAATAAAAACAACCAGGATTAAAACATG
5140208 AGTCAA
66 AGTCAA
* * ** * * * ** *
5140214 AAAATGAAAATGATCGGGATTAAACCATGAGT-TAGAAAAT-CAAACAACTGGGATTAAATCATG
1 AAAATGAAAATGACCGGGAGTAAACCACCAGTCAAAAAAATAAAAACAACCAGGATTAAAACATG
*
5140277 AGTCAG
66 AGTCAA
5140283 AAAATGAAAA
1 AAAATGAAAA
5140293 AGACTATGAT
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
69 33 0.49
70 6 0.09
71 28 0.42
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.17
Consensus pattern (71 bp):
AAAATGAAAATGACCGGGAGTAAACCACCAGTCAAAAAAATAAAAACAACCAGGATTAAAACATG
AGTCAA
Found at i:5140645 original size:107 final size:104
Alignment explanation
Indices: 5140403--5143160 Score: 445
Period size: 106 Copynumber: 26.4 Consensus size: 104
5140393 ATGACATGGT
* * * *** *
5140403 TTAAATCACGAGTCAAAAAATGAAAATGACTTGGATTAAACCA-AGAGTCAAAAAATAAAAATGA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGA-AGTCAAAAAATGAAAATGA
* * * *
5140467 TCAAAATTAAATCGCGAGTCAAAAAATTTAAAATGATCAGGA
64 TC-AAATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * * *
5140509 TTAAACCATGAGTCAAAAAATGAATATGACCAA-ATTTAAACTATG-AGTTAAGAAATGAAAATG
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGA-TTAAAC-A-GAAGTCAAAAAATGAAAATG
* * *
5140572 ATCGAGATTAAATCATGAGTTATAAAATTGAAAAATGA-CAAAGA
63 ATC-AAATTAAATCACGAGTTAAAAAATTG-AAAATGATC-AAGA
5140616 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAACAGCAAGTCAAAAAATGAAAATGA-
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAACAG-AAGTCAAAAAATGAAAATGAT
* * * *
5140680 CCAATTAAACCACGAGTTAGAAAA-TGAAAATGATCGAGA
65 CAAATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
** ** * * **
5140719 TTAAACCACAAGTTTGAAAATGAAAATGACTAGGATTAAACCACCAGT-----AA--AAAA--AT
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAATGAT
* * *
5140775 CAAGATTAAACCACGAGTCAAAAAA-TGAAAAACGATCAAGA
65 CAA-ATTAAATCACGAGTTAAAAAATTG-AAAATGATCAAGA
* ** **** ** * *
5140816 TTAAAACCATGAGTCATAAAATGAAAACAATTGGGATTAAACCACTAGTAAAAAAATAAAAAGTG
1 TT-AAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAA-TG
* * * * * * **
5140881 ACCAGAATTAAACCACGAATCAGAAAA-TGAAATACGA-CTGGGA
63 ATCA-AATTAAATCACGAGTTAAAAAATTGAAA-ATGATC-AAGA
* ** * * * * *
5140924 TTAAACTAAAAGTCA-AAAATAAAAATGATCAAAAATAAACCATCG-A-TC-AGAAA--AAAATG
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CA--GAAGTCAAAAAATGAAAATG
* * * * * * *
5140983 ATTAGTATTAAACCATGAGTCAAAAAATT-AAAATGACCGAGA
63 ATCA-AATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * * * * *
5141025 TTAAAACATGA-TCCA-AAAATGAAAATGACCAAGATTAAGCCACATGTTAGAAAA-GAAAAATG
1 TTAAACCATGAGT-CAGAAAATGAAAATGACCAAGATTAA-ACAGAAGTCAAAAAATG-AAAATG
* * * * * **
5141087 AT-AGGGATTAAACCACAAGTCAAAAAA-TAAAAATGATCGGGA
63 ATCA--AATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * * * * * *
5141129 TTAAACCAGGAGTTAAAAAATGAAAATAATCAGGATTAAACCACCAA-TC---AAA--AAAATGA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CA-GAAGTCAAAAAATGAAAATGA
* * * * **
5141188 TTGAGATTAAA-CTATGAGTTAGAAAA-TGAAAATGA-CTGTGA
64 -TCAAATTAAATC-ACGAGTTAAAAAATTGAAAATGATC-AAGA
* * * * * *** * * * **
5141229 TTAAATCACGAGTAAAAAAATAAAAAATGA-TTGGTACTAAATCACAAGTTAAAAAATGAAAACA
1 TTAAACCATGAGTCAGAAAAT-GAAAATGACCAAG-ATTAAA-CAGAAGTCAAAAAATGAAAATG
* * ** * * *
5141293 AGCACGATTAAGCCACCTA-TCAGAAAAA--GAAAAATGATCGAGA
63 ATCA-AATTAAATCA-CGAGTTA-AAAAATTG-AAAATGATCAAGA
** * * * * * * * * * *
5141336 TTAAACCACAAGTAAAAAAATGAAAACGATCAAAATTAAATCACAAGTCAGAAATTGAAAACGAC
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAATGAT
** * *
5141401 CAAGATTAAATCGTGAGTCAAAAAA-TGAAAATCGAT-TAGA
65 CAA-ATTAAATCACGAGTTAAAAAATTGAAAAT-GATCAAGA
* * * * * * ** * *
5141441 GTTAAACCCTAAGTCAAAAAAAAGAAAACT-ACTAAAATTAAACCCCAAGTTAGAAAATGAAAA-
1 -TTAAACCATGAGTC-AGAAAATGAAAA-TGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAAT
* * * * *
5141504 GGTCTAGGATTAAACCAAGAGTTAAAAAA-TGAAAATGATCGAGA
62 GATC-A-AATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
** * *** * *
5141548 TTAAACCACCAGTTAG-AAA--AAAATGACTGGGATTAAACCATG-AGTCAGAAAATGAATATGA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CA-GAAGTCAAAAAATGAAAATGA
* * * *
5141609 -CTAAGATTAAA-CTATGAGTTTAAAAA-TGAAAATGACCAAAA
64 TC-AA-ATTAAATC-ACGAGTTAAAAAATTGAAAATGATCAAGA
* * * * * *
5141650 TTAAATCACGAGTCAAAAAATCAAAATGACCAGGATTAAAC-GATGAGTCATAAAATGAAAAATG
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAACAGA--AGTCAAAAAATG-AAAATG
** * * * * **
5141714 A-CTAGGGTT-AAGCAACAAGTCAGAAAA-TGAAAATGA-CTGGGA
63 ATC-A-AATTAAATC-ACGAGTTAAAAAATTGAAAATGATC-AAGA
* * * ** *
5141756 TTAAACCACGAGTCAAAAAATGAAAAATGACCAAAATTAAACCATG-AGTTGGAAAAATGACAAT
1 TTAAACCATGAGTCAGAAAATG-AAAATGACCAAGATTAAA-CA-GAAG-TCAAAAAATGAAAAT
* * * * * * *
5141820 GATCAAAATTAAATTATGAGTCAGAGAA-TAAAAATGATTGAA-A
62 GATC-AAATTAAATCACGAGTTAAAAAATTGAAAATGA-TCAAGA
* * * * * *
5141863 TTAAACTAAGAGTTAGAGAATGAAATTGATCGAA-ATTAAACCACG-AGTCAAAAAATGAAAATG
1 TTAAACCATGAGTCAGAAAATGAAAATGA-CCAAGATTAAA-CA-GAAGTCAAAAAATGAAAATG
* * * * **
5141926 AT-AAGGATTAAACCATGAATCAAAAAA-TGAAAAATGAAT-GGGA
63 ATCAA--ATTAAATCACGAGTTAAAAAATTG-AAAATG-ATCAAGA
* * * * * * *
5141969 TTAAACTAGGAGTCAAAAAATGGAAACGACCGAGATTAAACCACAAGTCAAAAAATGAAAATGAT
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAATGA-
*** * * * * * *
5142034 TGGGATTAAACCATGAGTTAGAAAA-TGAAAA-CAACTGAGA
64 TCAAATTAAATCACGAGTTAAAAAATTGAAAATGATC-AAGA
* * * * **
5142074 TTAAACCATAAGTTAGAAAATGAAAAAAGA-CAGAGATTAAACCATAAGTCAGAAAATAAAAAAA
1 TTAAACCATGAGTCAGAAAATG-AAAATGACCA-AGATTAAA-CAGAAGTCA-AAAA-ATGAAAA
* * ** * ** * * *
5142138 TAACCAAGATTAAAT-ATAAGTCAGAGGAA-TAAAAAAGA-CCAGTA
61 TGATCAA-ATTAAATCACGAGTTA-AAAAATTGAAAATGATCAAG-A
* * * * *
5142182 TTAAATCATGAGTTAGAAAATAAAAATGATC-AGAATTAAACCACG-AGTCAAAATAA-CAAAAT
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAG-ATTAAA-CA-GAAGTCAAAA-AATGAAAAT
* * * *
5142244 GAT-AGGAATTAAATCACCCA-TCAAAAAAATGAAAATGACCAAGA
62 GATCA--AATTAAATCA-CGAGTTAAAAAATTGAAAATGATCAAGA
* * * * * * * * *
5142288 TTAAACCATAAGTCAAAAAATAAAAAAGACGAGGATTAAACCATAAGTCAGAAAATGAAAAATAA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATG-AAAATGA
*** * * * * * * * *
5142353 TTGGGATTAAATTACAAGTCAGAAGAA-TAAAAAAGATCGATA
64 -TCAAATTAAATCACGAGTTA-AAAAATTGAAAATGATCAAGA
* * * * *
5142395 TTAAATCATAAGTCAGAAAAT-AAAATTGACCAAAATTAAACCATG-AGTCAGAAAATCAAAATG
1 TTAAACCATGAGTCAGAAAATGAAAA-TGACCAAGATTAAA-CA-GAAGTCAAAAAATGAAAATG
* * * ** * *
5142458 GTAGAAATTAAATCACTAGTTAAAAAA-TGAAAACAACCAGGA
63 AT-CAAATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * **
5142500 TTAAACCATGAGTCAGAAAATGAAAATGAGTCAA-ATTAAACCACAAGTCAAAAAATGAAAACAA
1 TTAAACCATGAGTCAGAAAATGAAAATGA-CCAAGATTAAA-CAGAAGTCAAAAAATGAAAATGA
* * * * * * * * *
5142564 CCAGGATTAGACCACCAGTCAAAAAA-AGAAAAACGATCAGGA
64 TCA-AATTAAATCACGAGTTAAAAAATTG-AAAATGATCAAGA
* * * *
5142606 TTAAACCATGGGCCAG-AAATGAAAATGATCGAGATTAAACTATG-AGTCAAAAAATGAAAATGA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAAC-A-GAAGTCAAAAAATGAAAATGA
* * * * *
5142669 -CAAGAATAAACCATGAGTTAGAAAA-TGAAAATCAT-AAG-
64 TCAA-ATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * * * * * * **
5142707 -T----CA--A---A-AAAA-GAAAATGAG-AGGGATTAGACCG-TGTCTTAGATAATGAAAACA
1 TTAAACCATGAGTCAGAAAATGAAAATGACCA-AGATTAAACAGAAGTC--AAAAAATGAAAATG
* * * **
5142758 ACCAAAATTAAATCACGAGTCAAGAAA-TGAAAATGATCGTGA
63 ATC-AAATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
* * * ** * * *
5142800 TTAAAACATGAGTCAAAAAATGAAAAACGACTGAGATTAAACCATAAGTTAGAAAAATAAAAATG
1 TTAAACCATGAGTCAGAAAATG-AAAATGACCAAGATTAAA-CAGAAGTCA-AAAAATGAAAATG
** * * **
5142865 ATCGCGATTAAACCATGAGTTAAAAAA-TGAAAATGA-CGGGGA
63 ATC-AAATTAAATCACGAGTTAAAAAATTGAAAATGATC-AAGA
* * ** * * * * *
5142907 TTAAACCATTAGTCAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAGAAAATGAAAACGAT
1 TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAA-CAGAAGTCAAAAAATGAAAATGAT
* * * * ** *
5142972 TAGGATTAAA-CTACCTA-TCAAAAAAAAGAAAAATGAT-AGGGA
65 CA-AATTAAATC-A-CGAGTTAAAAAATTG-AAAATGATCA-AGA
** * * * *
5143014 TTAAACCACAAGTCAAAAAATGAAAAATGACCATGATTAGACCATG-AGACAAAAAATGAAAATG
1 TTAAACCATGAGTCAGAAAATG-AAAATGACCAAGATTA-AACA-GAAGTCAAAAAATGAAAATG
* * * * * *
5143078 A-CTATGATTAAACCATGAGTCAAAAAA-TGAAAATAATCCAGA
63 ATC-A-AATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
5143120 TTAAACCATGAGTCAGAAAATGAAAATGAACCAA-ATTAAAC
1 TTAAACCATGAGTCAGAAAATGAAAATG-ACCAAGATTAAAC
5143161 CACAAAGATT
Statistics
Matches: 1990, Mismatches: 473, Indels: 380
0.70 0.17 0.13
Matches are distributed among these distances:
88 4 0.00
90 26 0.01
91 29 0.01
92 3 0.00
94 2 0.00
95 2 0.00
96 27 0.01
97 13 0.01
98 40 0.02
99 2 0.00
100 60 0.03
101 54 0.03
102 110 0.06
103 70 0.04
104 92 0.05
105 326 0.16
106 537 0.27
107 447 0.22
108 141 0.07
109 4 0.00
110 1 0.00
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (104 bp):
TTAAACCATGAGTCAGAAAATGAAAATGACCAAGATTAAACAGAAGTCAAAAAATGAAAATGATC
AAATTAAATCACGAGTTAAAAAATTGAAAATGATCAAGA
Found at i:5140854 original size:133 final size:130
Alignment explanation
Indices: 5140646--5140896 Score: 290
Period size: 133 Copynumber: 1.9 Consensus size: 130
5140636 TGAAAATGAC
* * * *
5140646 CAAGATTAAACAGCAAGTCAAAAAATGAAAATGACCAATTAAACCACGAGTTAGAAAATGAAAAT
1 CAAGATTAAACAGCAAGTCAAAAAATGAAAACGACAAATTAAACCACGAGTCAGAAAATGAAAAC
* *** * * *
5140711 GATCGAGATTAAACCACAAGTTTGAAAATGAAAA-TGACTAGGATTAAACCACCAGTAAAAAAAT
66 AATCGAGATTAAACCACAAGTAAAAAAATAAAAAGTGACCAGAATTAAACCACCAGTAAAAAAAT
* * *
5140775 CAAGATTAAACCA-CGAGTCAAAAAATGAAAAACGATCAAGATTAAAACCATGAGTCATAAAATG
1 CAAGATTAAA-CAGCAAGTCAAAAAATG-AAAACGA-CAA-ATT-AAACCACGAGTCAGAAAATG
* * *
5140839 AAAACAATTGGGATTAAACCACTAGTAAAAAAATAAAAAGTGACCAGAATTAAACCAC
61 AAAACAATCGAGATTAAACCACAAGTAAAAAAATAAAAAGTGACCAGAATTAAACCAC
5140897 GAATCAGAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
129 23 0.23
130 8 0.08
131 2 0.02
132 3 0.03
133 47 0.47
134 16 0.16
ACGTcount: A:0.53, C:0.15, G:0.14, T:0.18
Consensus pattern (130 bp):
CAAGATTAAACAGCAAGTCAAAAAATGAAAACGACAAATTAAACCACGAGTCAGAAAATGAAAAC
AATCGAGATTAAACCACAAGTAAAAAAATAAAAAGTGACCAGAATTAAACCACCAGTAAAAAAAT
Found at i:5140856 original size:98 final size:96
Alignment explanation
Indices: 5140683--5140872 Score: 238
Period size: 98 Copynumber: 2.0 Consensus size: 96
5140673 AAAATGACCA
* * * * * **
5140683 ATTAAACCACGAGTTAGAAAATGAAAATGATCGAGATTAAACCACAAGTTTGAAAATGAAAATGA
1 ATTAAACCACGAGTCAAAAAATGAAAACGATCAAGATTAAACCACAAGTATGAAAATGAAAACAA
5140748 CTAGGATTAAACCACCAGTAAAAAAATCAAG
66 CTAGGATTAAACCACCAGTAAAAAAATCAAG
**
5140779 ATTAAACCACGAGTCAAAAAATGAAAAACGATCAAGATTAAAACCATGAGTCAT-AAAATGAAAA
1 ATTAAACCACGAGTCAAAAAATG-AAAACGATCAAGATT-AAACCACAAGT-ATGAAAATGAAAA
* * *
5140843 CAATTGGGATTAAACCACTAGTAAAAAAAT
63 CAACTAGGATTAAACCACCAGTAAAAAAAT
5140873 AAAAAGTGAC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
96 21 0.27
97 13 0.16
98 44 0.56
99 1 0.01
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (96 bp):
ATTAAACCACGAGTCAAAAAATGAAAACGATCAAGATTAAACCACAAGTATGAAAATGAAAACAA
CTAGGATTAAACCACCAGTAAAAAAATCAAG
Found at i:5140870 original size:72 final size:72
Alignment explanation
Indices: 5140778--5140929 Score: 175
Period size: 72 Copynumber: 2.1 Consensus size: 72
5140768 AAAAAATCAA
* * * *
5140778 GATTAAACCACGAGTCAAAAAATGAAAAA-CGATCAAG-ATTAAAACCATGAGTCATAAAATGAA
1 GATTAAACCACGAGTAAAAAAAT-AAAAAGCGA-CAAGAATT-AAACCACGAATCAGAAAATGAA
*
5140841 A-ACAATTGG
63 ATACAACTGG
* * *
5140850 GATTAAACCACTAGTAAAAAAATAAAAAGTGACCAGAATTAAACCACGAATCAGAAAATGAAATA
1 GATTAAACCACGAGTAAAAAAATAAAAAGCGACAAGAATTAAACCACGAATCAGAAAATGAAATA
*
5140915 CGACTGG
66 CAACTGG
5140922 GATTAAAC
1 GATTAAAC
5140930 TAAAAGTCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
71 28 0.41
72 40 0.59
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.18
Consensus pattern (72 bp):
GATTAAACCACGAGTAAAAAAATAAAAAGCGACAAGAATTAAACCACGAATCAGAAAATGAAATA
CAACTGG
Found at i:5141603 original size:102 final size:104
Alignment explanation
Indices: 5141492--5141804 Score: 263
Period size: 102 Copynumber: 3.0 Consensus size: 104
5141482 ACCCCAAGTT
* * * * *
5141492 AGAAAATGAAAAGGTCTAGGATTAAACCAAGAGTTAAAAAATGAAAATGATCGAGATTAAACCAC
1 AGAAAATGAAAAGGACTAAGATTAAACCAAGAGTTAAAAAATGAAAATGACCAAAATTAAACCAC
* * **
5141557 CAGT-TAGAAA-AAAATGACTGGGATTAAACCATGAGTC
66 CAGTCAAAAAACAAAATGACCAGGATTAAACCATGAGTC
* * * * * *
5141594 AGAAAATGAATATGACTAAGATTAAACTATGAGTTTAAAAATGAAAATGACCAAAATTAAATCAC
1 AGAAAATGAAAAGGACTAAGATTAAACCAAGAGTTAAAAAATGAAAATGACCAAAATTAAACCAC
* *
5141659 GAGTCAAAAAATCAAAATGACCAGGATTAAACGATGAGTC
66 CAGTCAAAAAA-CAAAATGACCAGGATTAAACCATGAGTC
* * * * * * * * ****
5141699 ATAAAATGAAAAATGACTAGGGTT-AAGCAACAAGTCAGAAAATGAAAATGACTGGGATTAAACC
1 AGAAAATG-AAAAGGACTAAGATTAAACCAA-GAGTTAAAAAATGAAAATGACCAAAATTAAACC
* * **
5141763 ACGAGTCAAAAAATGAAAAATGACCAAAATTAAACCATGAGT
64 ACCAGTCAAAAAA--CAAAATGACCAGGATTAAACCATGAGT
5141805 TGGAAAAATG
Statistics
Matches: 167, Mismatches: 38, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
102 57 0.34
103 4 0.02
105 34 0.20
106 49 0.29
107 23 0.14
ACGTcount: A:0.51, C:0.12, G:0.18, T:0.20
Consensus pattern (104 bp):
AGAAAATGAAAAGGACTAAGATTAAACCAAGAGTTAAAAAATGAAAATGACCAAAATTAAACCAC
CAGTCAAAAAACAAAATGACCAGGATTAAACCATGAGTC
Found at i:5142133 original size:19 final size:19
Alignment explanation
Indices: 5142075--5142133 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
5142065 CAACTGAGAT
*
5142075 TAAACCATAAGTTAGAAAA
1 TAAACCATAAGTCAGAAAA
* * *
5142094 TGAAA--A-AAGACAGAGAT
1 T-AAACCATAAGTCAGAAAA
5142111 TAAACCATAAGTCAGAAAA
1 TAAACCATAAGTCAGAAAA
5142130 TAAA
1 TAAA
5142134 AAAATAACCA
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
16 3 0.10
17 8 0.28
18 2 0.07
19 13 0.45
20 3 0.10
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.17
Consensus pattern (19 bp):
TAAACCATAAGTCAGAAAA
Found at i:5142245 original size:213 final size:211
Alignment explanation
Indices: 5142003--5142560 Score: 610
Period size: 213 Copynumber: 2.6 Consensus size: 211
5141993 AACGACCGAG
* * * * * *
5142003 ATTAAACCACAAGTCAAAAAATGAAAATGATTGGGATTAAACCA-TGAGTTAGAAAATGAAAACA
1 ATTAAACCACGAGTCAAAAAA-CAAAATGATAGGAATTAAATCACT-AGTTAAAAAATGAAAACA
* *
5142067 ACTGAGATTAAACCATAAGTTAGAAAATGAAAAAAGACAGAGATTAAACCATAAGTCAGAAAATA
64 AC-AAGATTAAACCATAAGTCAGAAAATGAAAAAAGACAGAGATTAAACCATAAGTCAGAAAAT-
* * *
5142132 AAAAAATAACCAAGATTAAA-TATAAGTCAGAGGAATAAAAAAGACC-AGTATTAAATCATGAGT
127 AAAAAATAACCAAGATTAAATTACAAGTCAGAAGAATAAAAAAGACCGA-TATTAAATCATAAGT
* * *
5142195 TAGAAAATAAAAATGATCAGA
191 CAGAAAATAAAAATGACCAAA
* *
5142216 ATTAAACCACGAGTCAAAATAACAAAATGATAGGAATTAAATCACCCA-TCAAAAAAATGAAAAT
1 ATTAAACCACGAGTCAAAA-AACAAAATGATAGGAATTAAATCA-CTAGT-TAAAAAATGAAAA-
* * *
5142280 GACCAAGATTAAACCATAAGTCAAAAAAT-AAAAAAGAC-GAGGATTAAACCATAAGTCAGAAAA
62 CAACAAGATTAAACCATAAGTCAGAAAATGAAAAAAGACAGA-GATTAAACCATAAGTCAGAAAA
* **** *
5142343 TGAAAAATAATTGGGATTAAATTACAAGTCAGAAGAATAAAAAAGATCGATATTAAATCATAAGT
126 TAAAAAATAACCAAGATTAAATTACAAGTCAGAAGAATAAAAAAGACCGATATTAAATCATAAGT
*
5142408 CAGAAAATAAAATTGACCAAA
191 CAGAAAATAAAAATGACCAAA
* * * *
5142429 ATTAAACCATGAGTCAGAAAATCAAAATGGTAGAAATTAAATCACTAGTTAAAAAATGAAAACAA
1 ATTAAACCACGAGTCA-AAAAACAAAATGATAGGAATTAAATCACTAGTTAAAAAATGAAAACAA
* * * * * * *
5142494 CCAGGATTAAACCATGAGTCAGAAAATGAAAATGAGTCA-A-ATTAAACCACAAGTCAAAAAATG
65 -CAAGATTAAACCATAAGTCAGAAAATGAAAA-AAGACAGAGATTAAACCATAAGTCAGAAAATA
5142557 AAAA
128 AAAA
5142561 CAACCAGGAT
Statistics
Matches: 290, Mismatches: 41, Indels: 29
0.81 0.11 0.08
Matches are distributed among these distances:
211 1 0.00
212 79 0.27
213 164 0.57
214 44 0.15
215 2 0.01
ACGTcount: A:0.55, C:0.11, G:0.14, T:0.19
Consensus pattern (211 bp):
ATTAAACCACGAGTCAAAAAACAAAATGATAGGAATTAAATCACTAGTTAAAAAATGAAAACAAC
AAGATTAAACCATAAGTCAGAAAATGAAAAAAGACAGAGATTAAACCATAAGTCAGAAAATAAAA
AATAACCAAGATTAAATTACAAGTCAGAAGAATAAAAAAGACCGATATTAAATCATAAGTCAGAA
AATAAAAATGACCAAA
Found at i:5142661 original size:35 final size:35
Alignment explanation
Indices: 5130614--5142700 Score: 3703
Period size: 35 Copynumber: 343.8 Consensus size: 35
5130604 CAACAACCAG
* * * * * *
5130614 GATTAAATCACGAGTTAGAAAATGGAAACGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5130648 GAATTAAACCATGACTCAAAAAATGAAAATGA-CTA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * *
5130683 GGATTATACCACAAGTGAGAAAATGAAACTGATC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5130718 GGATTAAATCACCAGTCAAAAAATAAAAATGATCGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5130754 GATTAAACCATGAGTCAAAAAATGAAAA-CAACTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* ** *
5130789 GATTAAATCACCAATCAGAAAAA-GAAAATTGATC-A
1 GATTAAACCATGAGTCA-AAAAATGAAAA-TGATCGA
* * * * * *
5130824 GTGTTAAACTATAAGTTAGAAAATGAAAATGATCGG
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5130860 GATTAAATCATGAGTCGAAAAATGAAAA-CAACCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** *
5130894 GGATTAAACCACAAGTCAAAAAATAAAAAATGATCGA
1 -GATTAAACCATGAGTCAAAAAAT-GAAAATGATCGA
* * *
5130931 GATT-AACTCACGAGTCAAAAAATGAAAATGACCAA
1 GATTAAAC-CATGAGTCAAAAAATGAAAATGATCGA
* * *
5130966 GATTAAACCACGAGTCAAAAAATGAAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5131002 AATT-AACCATGAGTCAAAAAATGAAAACGATTG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * ** * *
5131035 GAATTAAATCACT-AATTAGAGAAT-AAAAACAACTAA
1 G-ATTAAACCA-TGAGTCAAAAAATGAAAATGATC-GA
* * * *
5131071 AATTAAACCACGAGTCAAAGAATGAAAACT-A-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* * * *
5131105 GAATTAAACCATAACAT-AAAAAATGAAAA-CAACAGA
1 G-ATTAAACCATGA-GTCAAAAAATGAAAATGATC-GA
* * * *
5131141 GATTAAACTATGAGTTAAAAAATGAAAAATGAGCAA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * * * *
5131177 GATTAAATCGA-GAGTTAAAAAATAAAAATGATTGG
1 GATTAAA-CCATGAGTCAAAAAATGAAAATGATCGA
* * *
5131212 GATTAAATCAAGAGTCAAAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * ** * *
5131247 AATTAAATCATAAATCAAAAAATAAAAACAACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5131282 GATTAAACCTTGAGTCAGAAAATGAAAA--AT---
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5131312 GA-TCAACCATGAGTCAGACAAGGGAAATGGTTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5131346 GATTAAGCCATGAGTCAGAAAATGAAAATTACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5131381 TATTAAACAATGAGTCAAAAAATGAAAATAATCTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5131416 GATTAAATCATGAGTTAGAAAAT-AAAATCGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAAT-GATCGA
* * * *
5131450 GGATTAAACTATCAGTCAAAAAAAGAAAAATGA-CTGT
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATC-GA
* *
5131487 GATTAAACCACGAGTCAAAAAATGAAAATGA-CTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
5131522 GATTAAACCACGAGTTAGAAAATGAAAACT-ATTGC
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
** ** * *
5131557 GATTAAATAACAAGT-TAGAAA--AAAATGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5131588 GGATTAAACCATGAGTCAAAAAATGAAAACGAT-TA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5131623 GGATTAAA-C-TGCAAGTC-ATAAATTAAAATTGA-CTGG
1 -GATTAAACCATG--AGTCAAAAAATGAAAA-TGATC-GA
* * * * *
5131659 GGTTAAACCCTAAGTCAAAAAA-AACAAACGA-CTGA
1 GATTAAACCATGAGTCAAAAAATGA-AAATGATC-GA
* *
5131694 CATTAAACCCCA-G-GTCAGAAAATGAAAATGATC-A
1 GATTAAA--CCATGAGTCAAAAAATGAAAATGATCGA
** * *
5131728 GGATTAAACCACAAGTCAAAAAATGAAAACGATCTA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5131764 GATTAAACTGAT-ATTCAAAAAATAAAAAATGA-CTGG
1 GATTAAAC-CATGAGTCAAAAAAT-GAAAATGATC-GA
5131800 GATTAAACTACA-G-GTCAAAAAATGAAAATGATCGA
1 GATTAAAC--CATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5131835 TATTAAACTATTAATTAGAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5131870 GATTAAATCACAAGTCAAAAAATGAAAACGATTAAACCACTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGA-T------CGA
***
5131912 GGATTAAACCATGAGTTGGAAAATGAAAATGA-CAGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5131948 GATTAAATCATGAGTTAAAAAATGAAAATGA-CTTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
** * * *
5131983 GATTAAACCACCAATCAGAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5132018 GATTAAACCATGAGTC-AGAAATGAAAA-CAACAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5132051 TAATTAAACCACCT-A-TTAGAAAAA-AAAAACT-A-CCA
1 -GATTAAACCA--TGAGTCA-AAAAATGAAAA-TGATCGA
* * * *
5132086 GGATTAAACTACGATTCAAAAAATGGAAATGA-CTGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
**
5132122 GATTAAACCACAAGTCAAAAAATGAAAATGATCG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5132156 GAATTAAACTA-CACCTCAACAAATGAAAA-GCAATTGG
1 G-ATTAAACCATGA-GTCAAAAAATGAAAATG--ATCGA
* ** *
5132193 GATTAAGCCGCGA-TCAAAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * *
5132227 GATTAAACCACAAGTCAGAGAATGGCAAATGATCGA
1 GATTAAACCATGAGTCAAAAAAT-GAAAATGATCGA
* *
5132263 GATTAAACTATGAGTCAAAAAATGAAAATGATAGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5132298 AATTAAATCATGAGTCAGAGAATAAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5132333 AATTAAACCAAGTGTCAGAGAATGAAAACGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * *
5132367 GAATTAAACCACAAGTTAGAAAATGAAAATGA-CAGG
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
5132403 GATTAAACTACGTGTTAAAAAAATGAAAAATGAAT-GG
1 GATTAAACCATGAG-TCAAAAAATG-AAAATG-ATCGA
* * *
5132440 GATTAAACTAAGAGTCAAAAAATGAAAATGA-CTAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * ** * * * *
5132475 AATTAAATCACAAGTTAGAAAATGAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * *
5132510 GATTAAACCACAAGTTAGAAAATGAAAATGA-CAGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* ** * * *
5132545 GATTAAACTACAAGTTAGAAAATGAAAATGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5132579 GGATTAAGCCATGAGTC-AAAAATACAAAATTA-CTGG
1 -GATTAAACCATGAGTCAAAAAAT-GAAAATGATC-GA
** * * * *
5132615 GATTAAATTATGAGTCAGAGAAATAAAAATGACCAA
1 GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* * *
5132651 TATTAAATCATGAGTCAAAAAATAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5132686 GATTAAACCATGAGTCAAAAAATGAAAATGATAG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
5132720 GAATTAGATTA-GTAGTTAAAAAATAAAAACGATTGA
1 G-ATTAAACCATG-AGTCAAAAAATGAAAATGATCGA
* * * * * *
5132756 AAATAAACCATGGGTCAGAAAATGAAAA-CAAC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** *
5132789 TGGATTAAATCATGAGTCAGAAAATGAAAACAATCAA
1 --GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5132826 GATTAAAACATGAGTTAGAAAATGAAAACGACCTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5132861 AATTAAACAAAGAGTCAAAAAATGAAAACGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *** * * * *
5132896 GATAAAAATGTGAGTTAGAAAATGAAAAACGAT-TA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * * * * *
5132931 GGATTAAACCATAAGTCAGAAAATGAATACGATTGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5132967 GTTTAAACCATGAGTTAAGAAATGAAAATGATCGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5133002 GATTAAAATCACT-AGTC-AAAAATGAAAAATGA-CTA
1 GATT-AAACCA-TGAGTCAAAAAATG-AAAATGATCGA
* *
5133037 GGATTAAACCACGAGTCAAAAAATGAAAATGATCGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** ** *
5133073 GATTAAACCACAAGTCAAAAAATGAAAACAATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** **
5133108 GGTTAAACCATGAGT-TGAAAATGAAAATGA-AAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5133141 GA--AAA--ATGACTGAGATTAAAT---CATGAGTC-A
1 GATTAAACCATGAGTCA-A-AAAATGAAAATGA-TCGA
** ** * * *
5133171 GAAAAAGAAAATGA--CTAAAAATTAAACCAAGAGTCAGAA
1 GATTAA-ACCATGAGTCAAAAAATGAAA--ATGA-TC-G-A
* * * ** * * *
5133210 AATGAAA-AATGA--C-TGAGATTAAACCATGAGTCAAAA
1 GATTAAACCATGAGTCAAAAAATGAAA--ATGA-TC--GA
* * ** * *
5133246 AATGAAAATGATTGAGATTAAACCACCATTCAGAAAATGAAAATCGAACA
1 GAT-TAAACCA-TGAG-TCAAA--A--AAT--GAAAATG---ATCG---A
* * * * * * *
5133296 GGTTAAATCAAGAGTTAGAAAATGTAAATGA-CAGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * ** *
5133331 GATTAAACCACGAGTCAGAAAATGAAAAACAATCAA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * * * *
5133367 GATTAAACCACGAGTTAGAAAATAAAAATGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5133402 GAGTAAA--TTGCCAGTCTAAAAAA-AAAAATTAATCAA
1 GATTAAACCATG--AGTC-AAAAAATGAAAA-TGATCGA
* * * * * *
5133438 AATTCAAATCACGAAGTCAAAAAATGAAAACGACCAA
1 GATT-AAACCATG-AGTCAAAAAATGAAAATGATCGA
** *
5133475 GATT-AA-CACTGAGTCTGAAAATGAAAATAATTCG-
1 GATTAAACCA-TGAGTCAAAAAATGAAAATGA-TCGA
*** * *
5133509 GAATTAAACTGGCGAGTCCAAAAATGAAACATGA-CTA
1 G-ATTAAAC-CATGAGTCAAAAAATGAAA-ATGATCGA
** * * *
5133546 GGATTAAATTATGAGTCAGAAAAA--AAACTAGAACTA
1 -GATTAAACCATGAGTCA-AAAAATGAAAAT-GATCGA
** * * * ** *
5133582 GGATTAAACCACAAATCCAGAAAATGAACATGGGGCCAA
1 -GATTAAACCATGAGT-CAAAAAATGAAAAT--GATCGA
* * * * *
5133621 GATTAAATCATCGAGTTCAGAAAAT-CAAATCGATTGG
1 GATTAAACCAT-GAG-TCAAAAAATGAAAAT-GATCGA
* * *
5133658 GATTAAACCAATG-GAACAGAAAAATGAAAATGACCAAA
1 GATTAAACC-ATGAG-TCA-AAAAATGAAAATGATC-GA
* *
5133696 GGATTAAAATCAATGAGTCAAGATAATGAAAA--ATCGCCTA
1 -GATT-AAA-CCATGAGTCAA-AAAATGAAAATGATCG---A
* * * * *
5133736 GGGTTAAACCATGAGTTAGAAAATAAAAACT-A-CTAA
1 -GATTAAACCATGAGTCAAAAAATGAAAA-TGATC-GA
** * *
5133772 GGATTAAACCCCGAGTCAATAAAAGTGAAAATGACAACCAGC
1 -GATTAAACCATGAGTCAA-AAAA-TGAAAATG---ATC-GA
* * * *
5133814 GATTAAAGCATGAGTCAAAAAAT-AAAA-CAACTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5133847 TATTAAACCATGAGTTTAGAAATGAAAATGAT-TA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5133881 GAATTAAATCACGAGCCAAAAAAATAAAAATGATCAA
1 G-ATTAAACCATGAGTC-AAAAAATGAAAATGATCGA
* * * *
5133918 GATTAAACCATGAGTCAGAAAGTAAAAATGACCTG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5133953 GATTAAATCATGA-TAAAAAAATGAAAACGAAT-GA
1 GATTAAACCATGAGTCAAAAAATGAAAATG-ATCGA
* * ** * *
5133987 AATTAAATCACAAGTTAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * ** *
5134022 GATTAAATCATAAGTTAGAAAACAAAAATGA-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * *
5134056 GGATTAAACCACCAGTC-AGAAA--AAAATGATCGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5134089 GATTAAACCGTGAGTCAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * * * *
5134124 AATTAGATCGTGGGTCAGAAAATAAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * *
5134159 AATTAAATTA-GAAGTCAAAAAATGAAAATAACCAA
1 GATTAAACCATG-AGTCAAAAAATGAAAATGATCGA
5134194 GATTAAACCACT-AGTCAAAAAATGAAAATGATC-A
1 GATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5134228 GGATTAAACCCCT-AGTTAGAAAATGAAAA-CAACCA
1 -GATTAAA-CCATGAGTCAAAAAATGAAAATGATCGA
** * * *
5134263 GAATTAAACCACCAGTCAAAAAATGAAAATAATAGG
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5134299 GATTACACCATGAGTCAAAAAATGAAAA-CAACCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
5134333 TGATGAAATCACCAGTCAAAAAAAGAAAAACGATC-A
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* *
5134369 GGTT-AACCATGA--CATAGAAAAT-AAAATGATCGG
1 GATTAAACCATGAGTCA-A-AAAATGAAAATGATCGA
* ** * * *
5134402 GATTAAATCACAAGTTAGAAAATGAAAACGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5134437 AATTAAACCATAAGTCAAAGAATGAAAAATGA-CTGA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATC-GA
* * * *
5134473 GATTAATCTACGAGTC-AAAAATGAAAAAGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5134507 AATTAAATCATGAGTTAGAGAATAAAAATGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5134542 AATTAAA-CAAGAGTCAAAGAATGAAAATGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5134576 AATTAAACCATGAGTCAAAAAATGAAAATGATAGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5134611 GATTAAACCACGAGTCAAAAAATGAAAAAGA-CTGT
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5134646 GATTAAATCATGAGTCAAAAAATAAAAAATGAT-TA
1 GATTAAACCATGAGTCAAAAAAT-GAAAATGATCGA
** * * * *
5134681 GGATTAAATTATGAGTTAGAGAAATAAAAATGA-CTAA
1 -GATTAAACCATGAGTCA-AAAAATGAAAATGATC-GA
* * ** * * *
5134718 TATTAAATCACAAGTTAGAAAATAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5134753 GATTAAACCACGAGTTAGAAAATGAAAATGAT-GG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * **
5134787 GAATTAGATCAACAGTCAAAAAATGAAAATGA-CTGA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5134823 AAATAAACCA-CAGGTCAAAAAATGAAAATGA-C-A
1 GATTAAACCATGA-GTCAAAAAATGAAAATGATCGA
* * * * *
5134856 TGGATTAAATCATGAGTTAGAAAATAAAAATGATTGA
1 --GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5134893 GATTAAAACATGAGTCAGAAAATGAAAACGATCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5134928 AATTAAACCAAGAGTCAAAAAATGAAAACGA-CTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
5134963 GATAAAATCATGAGTTAAAACATAAACAATGATTC-A
1 GATTAAACCATGAGTCAAAAAATGAA-AATGA-TCGA
* * ** * * * * *
5134999 AATTAAACTACAAATTAGAAAATGAATACGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5135033 GGTTTAAACCATGAGTTAAGAAATGAAAATGACCGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* **
5135069 GATTAAATCACAAGTCAAAAAATGAAAAATGATC-A
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5135104 GGATTAAACAACGAGTTAAAAAATGAAAATGATC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * * **
5135139 GGATTAAACCACAAGTTAGAAAGTGAAAACAACTCGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* *
5135176 -ATTAAACCATGAGTCAGAAAATAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * **
5135210 GATTAAACTAGGAGTCAAAAAATGAAAATGA-AAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5135244 GA-AAAATGACTGAGATTAAACCACAAGTCAGAAAAAAATGA-CTAA
1 GATTAAACCA-TGAG-TCAAA--A-AA-T--G---AAAATGATC-GA
* * * ** *
5135289 AATTAAACCAAGAGTCAAAAAATAAAAAACAACTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5135325 GATTAAATCATGAGTCAAAAAATGAAAACGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* **
5135359 GGATTAAACCACT-ATTCTGAAAATGAGAAATGAAT-G-
1 -GATTAAACCA-TGAGTCAAAAAATGA-AAATG-ATCGA
* * * * * *
5135395 GATTAAACTAAGGGTCAAAAAATGTAAATGATAGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
5135430 GATTAAACCATGAGTCAGAAAATGTAAACAACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5135465 GATTAAACCATGAGTTAGAAAATGAAAAGGACCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** ** **
5135500 GAGTAAATTACCAACCTAAAAAA-GAAAAATGATCGA
1 GATTAAACCATGAGTC-AAAAAATG-AAAATGATCGA
* * * * * * * *
5135536 AATTAAACCGTAAGTTAGAAAATGAAAA-CAACTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** **
5135570 GGATTAAATAATGAGTCTGAAAATGAAAATGATCTG-
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
** * * *
5135606 GATTAAACCACAAGTCTAAAAATAAAAATGA-CTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5135641 GATTAAACCATGAGTCCAAAAA-G-AAATGATAGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5135674 GACTAAACCGTGAGTCAAAAAATGAAAACG-GCTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
5135708 GGATTAAACCACAAGTCAGAAAATCAAAATGATAGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5135744 GATTAAACCATGAATCAAAAGATGAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * * * *
5135779 GATTAAACCACAAGTTAGATAATGAAAATTG-CCTA
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* **
5135814 GGGTTAAACCCCGAGTCAAAAAAAT-AAAGACT-ATC-A
1 -GATTAAACCATGAGTC-AAAAAATGAAA-A-TGATCGA
** *
5135850 GGATTAAACCCCGAGTCATAAAATGAAAATGATC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5135885 GGATTAAAGCATGAGTCAAAAAATGAAAATGATTGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *** * *
5135921 GACTAAACCCCCAG-CAAAAAA--AAAATAATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5135953 AATAAAACCACGAGTCAAAAAATAAAAATGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5135987 GTATTAAATCATAAGTCAAAAAATAAAAATGATCGA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5136023 AATTAAATAATGAGTCAAAAACTAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *** * *
5136058 GATTAAACCACGAGTCAGAAAGCAAAAACGA-CCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5136092 GGATTAAACCATAAATCAAAAAATAAAAATGAAT-GA
1 -GATTAAACCATGAGTCAAAAAATGAAAATG-ATCGA
* * * * ** *
5136128 AATTAAATCATGAGTTAGAAAATGAAAACAACCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
5136163 GACTAAATCACAAGTCAAAAAATAAAAATGA-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5136197 TGATTAAACCGTCAATCAAAAAAAGAAAAACGACCGG
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* *
5136234 GATTAAACCATGAGTCAAAAAATGAAAACT-ACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* * * * * *
5136269 AATTAAATCATGGGTCAGAAAATGAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
5136304 AATTAAATCATGAGTCAAAAAATGAAAACAATTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5136339 GATTAAACCACT-AGTTAGAAAATGAAAATGATC-A
1 GATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA
** * *
5136373 GAATTAAACCACT-AGTCAAAAAATGAAAACAATTGG
1 G-ATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA
** * * *
5136409 GATTAAACTGTGAGTCAAAAAATGAAAA-CAACTAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * *
5136444 GATGAAATCACT-AGTTAGAAGAAA--AAAATGATCAA
1 GATTAAACCA-TGAGTCA-AA-AAATGAAAATGATCGA
** * * *
5136479 G-TT-AATTATAAGTCAAAAAATGAAAACGATTG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5136511 GATCTAAATCACAAGTCAAAAAATGAAAATGACCAA
1 GAT-TAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5136547 GATTAAACCACGAGTCAAAAAATGAAAAATGATCGC
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
** * * *
5136583 GATTAGCCCATAAGTCACAAAATGAAAATGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5136617 GAATTAAACCATGAGTCAAAAAATGAAAACTG--CCA
1 G-ATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* * * * *
5136652 GAATTAAATCA-GAAGTTAGAGAATAAAAATGATCGA
1 G-ATTAAACCATG-AGTCAAAAAATGAAAATGATCGA
* * * *
5136688 AATTAAACCAAGAGTCAAAGAATAAAAACT-ATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* * ** * *
5136722 GAATTAAACCATGAGTTAGAAAATGAAAACAATGGG
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5136758 GATTAAACCA-GAGTCAGAAAATGAAAAATGAAC-A
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5136792 GAATTAAACCATTAGTCAGAACATGAAAATGATCGA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * *
5136828 GATTAAACCA-CAATTTAAAAATGAAAACGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5136862 GATTAAACCATGAGTCAGAAAATGAAAA-CAACCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5136896 GGATTAAACCACGAGTCAAAATATGAAAAACGA-CCA
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* ** * * *
5136932 CAATTAAATTACGAGTCAGAGAAAT-AAAA-AATC-A
1 -GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* ** ** *
5136966 CTATTAAATGACAAGTCAAAAAATGAAAATGATTGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5137002 GATTTAACCATGAGTTAAAAAATGAAAACGA-CGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** **
5137036 GAATGAAATTACCAGTCAAAAAATGAAAA-GATCGA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5137071 GATTAAACCACGAGTCAAAAAATGAAAACGA-C-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5137104 TGGATTAAATCC-TGAGTCAAAAAATGAAAATGA-CTGG
1 --GATTAAA-CCATGAGTCAAAAAATGAAAATGATC-GA
* *** * *
5137141 GATT-AACCACGAGTTTGAAAATGAAAATGACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** ** *
5137175 AATAAAACCAAAAGTCAAAAAATGAAAACAACCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5137210 GATTAAACCACGAGCCAAAAAATAAAAAACGAT-TA
1 GATTAAACCATGAGTCAAAAAAT-GAAAATGATCGA
* * * *
5137245 GGATTGAACCATGAG-CAAAAAATGAATACGA-CAGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* ** * *
5137280 GTTTAAACCACAAGTCAAGAAATGAAAATGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** ** * * * * *
5137315 GATTAAATTACAAGTTAGAAAATTAAAAACGATCGG
1 GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* * * ** * *
5137351 GATTAAAGCATGAGTCAGAAAATGGAAACAACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5137386 GATTAAACCACGAGTTAGAAAATGTAAA-CAACTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
**
5137421 GATTAAACCATGAGTCAAAAAACAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * * *
5137456 GATTAAACCACCAATTAGAAAAACT-AAAATGACCAA
1 GATTAAACCATGAGTCA-AAAAA-TGAAAATGATCGA
* * * *
5137492 GATTAAACC-TCAAGTC--AAATTGAAAATGACCAA
1 GATTAAACCAT-GAGTCAAAAAATGAAAATGATCGA
* * * *
5137525 AATTAAACCAAGAGTCAAAAAATGAAAAATGATTGG
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5137561 GATTAAACCATGAGTCAGAAAATGAAAAAGA-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *** * *
5137595 GGATTAAATCATCATTTTGAAAATAAAAAATGAAT-GG
1 -GATTAAACCATGAGTCAAAAAAT-GAAAATG-ATCGA
** * ** * * *
5137632 GATTAAACCAAAAGTCATAAAATCTAAACGATTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5137667 GATTAAACTACGAGT-AAGAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAA-AAAATGAAAATGATCGA
* * * * *
5137702 GATTAAACAATGAGTTAGAAAATAAAAATGATCGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* **
5137737 GATTAAACCAT-AGTCAAAAAAAGAAAAACAATCGA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
** * ** * *
5137772 GATTAAACCACAAGTTAAAAAATGAAAACAACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5137807 GATGAAACAATGAGTCAGAAAATGAAAAAGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5137841 TGATTAAACCAGGAGTCAGAAAATTAAAATGA-CTAA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5137877 GATTAAACCATAAGTCAGAAAATGAAAATGACTGGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* ** * * *
5137913 -ATTAAATCACAAGTCAAAAAATGAAAA-CAACTGT
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* *
5137947 GAATAAATCATGAGTCAAAAAATGAAAATGA-C-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * * *
5137980 TGGATTCAATTACGAG-CTAGAAGATGAAAACGA-CTGG
1 --GATTAAACCATGAGTC-AAAAAATGAAAATGATC-GA
* ** * *
5138017 GATTAAACCAAGAGAT-AAGTAATGAAAACGATCTA
1 GATTAAACCATGAG-TCAAAAAATGAAAATGATCGA
* * * * *
5138052 GATTAAATCATGAGTCAAGAAATGAAAACGACCGT
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5138087 GATTAAATCATAAGTCAAAAAATAAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
5138122 AATTAAATTAAGAGTAAAAAAATAAGAAAACGCTC-A
1 GATTAAACCATGAGTCAAAAAAT--GAAAATGATCGA
* *
5138158 GAATTAAACCATGAGTCAAAAAAATGAAAGTGA-CATA
1 G-ATTAAACCATGAGTC-AAAAAATGAAAATGATC-GA
* * **
5138195 GATTAAACAACT-AGTCAAAAAAAGAAAAACAATCGA
1 GATTAAACCA-TGAGTCAAAAAATG-AAAATGATCGA
* * * * *
5138231 AATTAAACTACGAGTCAAAAAATGAAAATGACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** *
5138266 GATTAAACCA-CA-TCCGAAAATGAAAATGA-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5138298 TGATTAAACCATGAGTCAGAAAAA-GAAAAATGA-CCA
1 -GATTAAACCATGAGTCA-AAAAATG-AAAATGATCGA
* * *
5138334 GGATTAAATCATGAGTCAAAAAATAAAAATGAAT-AA
1 -GATTAAACCATGAGTCAAAAAATGAAAATG-ATCGA
* * ** *
5138370 GATTCAATCGCGAGTTAAAAAATGAAAATGATCGTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCG-A
* **
5138406 -ATTAAACCATAAGTCAAAAAACAAAAATGACTC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
** * *
5138440 GATTAAACCACAAGTCAGAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5138475 GATTAAACCATGAGTTAGAAAA--AAAATGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5138507 TGATTAAACCATGAGTCAAAAAATTAAAATGATCAA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * * * *
5138543 AATTAAATTATGCA-TAAAAAAATGAAGGATGATTGG
1 GATTAAACCATG-AGTCAAAAAATGAA-AATGATCGA
* * *
5138579 GATTAAACCACGAGTTAGAAAATGAAAATGATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5138613 GGAATAACCCATGCGTGAGAAAATGAAAATGTTC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5138648 GGATTAAATCATGAGTCAAAAAATGAAAAT-AACTGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* *
5138684 GATTAAACCACT-AGTCAAAAAAAGGAAAATAATCGA
1 GATTAAACCA-TGAGTC-AAAAAATGAAAATGATCGA
* * *
5138720 GATTAAACCACCG-GTCAGAAAAT-AAAGACGATCGA
1 GATTAAACCA-TGAGTCAAAAAATGAAA-ATGATCGA
* * * * * *
5138755 CATTAAGCCACGAGTCAAAAAATGAAAATAACCTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5138790 GATTAAACCATGAGTCAAAAAATAAAAATAATTGT
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** *
5138825 GATTAATCCATGAGTCAAAAAATGAAAATGCCCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5138860 AATTAAACCA-CATGTTAGAAAAA-GAAAAATGATCGG
1 GATTAAACCATGA-GTCA-AAAAATG-AAAATGATCGA
* * *
5138896 GATTAAACCATCAGTTC-AAAATTGAAAATGATCAA
1 GATTAAACCATGAG-TCAAAAAATGAAAATGATCGA
*
5138931 GATTAAACCACT-AG-CCAAAAA--AAAATGATC-A
1 GATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA
* *** * ** *
5138962 GGATTAAATCACCCGTCAGAAAATGAAAACCATTGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * *
5138998 GATTAAACCACAAGTCAAAAAATGAAAATGAGCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** *
5139033 GATTAAACCATGAGTCCGAAAATAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5139068 GATTAAACCATGATTCAAAAAA-GAAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5139103 GATTAAACCATAAGTCAAAAAATGAACATGACTGGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* * * * *
5139139 -ATTAAACGATGAGTCAGAAAATGAAAACGATTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** *
5139173 GATTAAACCATGAGTCAAAAAATAAAAACAAT-TA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5139207 GAATTAAACCATGAGTCAAAAAATGAAAAATGA-CTA
1 G-ATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
** * * * *
5139243 TGATTAAATAACGAGTCAAAGAAATAAAAAAGATTG-
1 -GATTAAACCATGAGTCAAA-AAATGAAAATGATCGA
* ** *
5139279 GTATT-AA--ATCAGTCAAAAAAACAAAAAAGA-CTG-
1 G-ATTAAACCATGAGTC-AAAAAATGAAAATGATC-GA
* * ** *
5139312 GTATTAAATCA-GAAGTCAAAAGATGAAAACAACCGA
1 G-ATTAAACCATG-AGTCAAAAAATGAAAATGATCGA
* * * *
5139348 GATT-AACCTACGATTCAAAAAATAAAAATGAT-GG
1 GATTAAACC-ATGAGTCAAAAAATGAAAATGATCGA
* * *
5139382 GATTCAAATCATCGA-TCAAAAAATGAAACTGA-CCA
1 GATT-AAACCAT-GAGTCAAAAAATGAAAATGATCGA
** * *
5139417 GGATTAAACCACAAGTCAGAAAATAAAAATGA-C-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5139451 TGGATTAAATCATGAGTCAAGAAATG-AAATGA-CTGG
1 --GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * *
5139487 GATTAAATCATGAGTCAGAAAATGAAAACGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5139522 GATTAATCTATGAGTCAAAAATTGAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5139557 GATTAAACCATCAGTCAGAAAAA--AAAATGATTGG
1 GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* * * *
5139591 GATTAAA-CATGAGTTAGAAAATGAATACT-A-CCA
1 GATTAAACCATGAGTCAAAAAATGAA-AATGATCGA
** * * * *
5139624 TGGCTACACTATGAGTCAAGAAATGAAAACGATC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5139659 GGATTAAATCATGAGTTAGAAAATGAATACT-ACCGG
1 -GATTAAACCATGAGTCAAAAAATGAA-AATGATCGA
* * ** * *
5139695 GGTTACATTACGAGTCAAGAAATGAAAATGATCGGGATTAACTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC--G-------A
* * *
5139739 GGATTAAACCATG-GTTAGAAAATGAAAATGACTCTA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* * *
5139775 -ATTAAACCAAGAGTCAGAAAATGAATATGA-CTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
** * ** * *
5139809 GATTAAACCACAATTCAAAAAATGAAAACAACCCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5139844 GATTAAACCAAGAGTCAGAAAATAAAAACGA-CTAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* *** * * * *
5139879 AATTAAATTGTGAGTTAGAAAATGAAAAACGAACTG-
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATC-GA
* * * * *
5139915 GATTGAACCACGAGT-AAGAAAATGAATAT-AACCA
1 GATTAAACCATGAGTCAA-AAAATGAAAATGATCGA
* *
5139949 GTGTTAATTA-CA--AGTCAAGAAATGAAAATGATCGA
1 G-ATTAA--ACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5139984 GATTAAATCAAT-AGTCAAAAAATGAAAAAAGGT-TA
1 GATTAAA-CCATGAGTCAAAAAATG-AAAATGATCGA
* ** **
5140019 GGACTAAACCACAAGTCAAAAAATGAAAATGATTAA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * ** **
5140055 GATTAATCCTTGAGTCAGAAAATGAAAACAATAAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5140090 AAATAAACCA-CATGTAAAAAAAGGAAAACGATC-A
1 GATTAAACCATGA-GTCAAAAAATGAAAATGATCGA
** * * * * *
5140124 GGATTAAACCACAATTTAGAAAATGAAAATGACCGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** ** * *
5140160 GAGTAAACCACCAGTCAAAAAAAT-AAAAACAACCA
1 GATTAAACCATGAGTC-AAAAAATGAAAATGATCGA
* * *
5140195 GGATTAAAACATTAGTCAAAAAATGAAAATGATCGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5140231 GATTAAACCATGAGTTAGAAAATCAAACA--A-CTGG
1 GATTAAACCATGAGTCAAAAAATGAAA-ATGATC-GA
* * * *
5140265 GATTAAATCATGAGTCAGAAAATGAAAAAGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * * *
5140299 TGATTAAACTACGACTCAGAGAATGAAAAATAATTGT
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
** ** * *
5140336 GATTAAATTACAAGT-AAGAGAAATAAAAAAGATC-A
1 GATTAAACCATGAGTCAA-A-AAATGAAAATGATCGA
* ** * * *
5140371 GTATTAAATCACAAATAAAAAAATG---A-CAT-G-
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5140401 GTTTAAATCACGAGTCAAAAAATGAAAATGACTTG-
1 GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* * *
5140436 GATTAAACCAAGAGTCAAAAAATAAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** *
5140471 AATTAAATCGCGAGTCAAAAAATTTAAAATGATC-A
1 GATTAAACCATGAGTCAAAAAA-TGAAAATGATCGA
* *
5140506 GGATTAAACCATGAGTCAAAAAATGAATATGA-CCA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5140541 AATTTAAACTATGAGTTAAGAAATGAAAATGATCGA
1 GA-TTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5140577 GATTAAATCATGAGTTATAAAATTGAAAAATGA-CAAA
1 GATTAAACCATGAGTCA-AAAAATG-AAAATGATC-GA
* * *
5140614 GATTAAACCATGAGTCAGAAAATGAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5140649 GATTAAA-CA-GCAAGTCAAAAAATGAAAATGA-CCA
1 GATTAAACCATG--AGTCAAAAAATGAAAATGATCGA
* * *
5140683 -ATTAAACCACGAGTTAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** *** *
5140717 GATTAAACCACAAGTTTGAAAATGAAAATGA-CTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** *
5140751 GGATTAAACCACCAGT-----AA--AAAA--ATCAA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5140778 GATTAAACCACGAGTCAAAAAATGAAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* ** * *
5140814 GATTAAAACCATGAGTCATAAAATGAAAACAATTGG
1 GATT-AAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5140850 GATTAAACCACT-AGTAAAAAAATAAAAAGTGA-CCA
1 GATTAAACCA-TGAGTCAAAAAATGAAAA-TGATCGA
* * * * *
5140885 GAATTAAACCACGAATCAGAAAATGAAATACGA-CTGG
1 G-ATTAAACCATGAGTCAAAAAATGAAA-ATGATC-GA
* ** * *
5140922 GATTAAACTAAAAGTC-AAAAATAAAAATGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5140956 AAATAAACCATCGA-TC-AGAAA--AAAATGAT-TA
1 GATTAAACCAT-GAGTCAAAAAATGAAAATGATCGA
* *
5140987 GTATTAAACCATGAGTCAAAAAATTAAAATGACCGA
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5141023 GATTAAAACATGA-TCCAAAAATGAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5141057 GATTAAGCCA-CATGTTAGAAAA-GAAAAATGATAGG
1 GATTAAACCATGA-GTCAAAAAATG-AAAATGATCGA
** * *
5141092 GATTAAACCACAAGTCAAAAAATAAAAATGATCGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5141127 GATTAAACCAGGAGTTAAAAAATGAAAATAATC-A
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * *
5141161 GGATTAAACCACCAATC---AAA--AAAATGATTGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5141192 GATTAAACTATGAGTTAGAAAATGAAAATGA-CTGT
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * * *
5141227 GATTAAATCACGAGTAAAAAAATAAAAAATGATTG-
1 GATTAAACCATGAGTCAAAAAAT-GAAAATGATCGA
* * ** * ** *
5141262 GTACTAAATCACAAGTTAAAAAATGAAAACAAGC-A
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
*
5141297 CGATTAAGCCACCT-A-TCAGAAAAA-GAAAAATGATCGA
1 -GATTAAACCA--TGAGTCA-AAAAATG-AAAATGATCGA
** * * *
5141334 GATTAAACCACAAGTAAAAAAATGAAAACGATCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * ** * * * * *
5141369 AATTAAATCACAAGTCAGAAATTGAAAACGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5141404 GATTAAATCGTGAGTCAAAAAATGAAAATCGAT-TA
1 GATTAAACCATGAGTCAAAAAATGAAAAT-GATCGA
* * * *
5141439 GAGTTAAACCCTAAGTCAAAAAAAAGAAAACT-A-CTAA
1 GA-TTAAACCATGAGTC-AAAAAATGAAAA-TGATC-GA
* *** * * * *
5141476 AATTAAACCCCAAGTTAGAAAATGAAAA-GGTCTA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5141510 GGATTAAACCAAGAGTTAAAAAATGAAAATGATCGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * * *
5141546 GATTAAACCACCAGT-TAGAAA--AAAATGA-CTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5141578 GATTAAACCATGAGTCAGAAAATGAATATGA-CTAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* ** * *
5141613 GATTAAACTATGAGTTTAAAAATGAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5141648 AATTAAATCACGAGTCAAAAAATCAAAATGA-CCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5141682 GGATTAAACGATGAGTCATAAAATGAAAAATGA-CTA
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * * ** * *
5141718 GGGTTAAGCAACAAGTCAGAAAATGAAAATGA-CTGG
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * *
5141754 GATTAAACCACGAGTCAAAAAATGAAAAATGACCAA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* ** * *
5141790 AATTAAACCATGAGTTGGAAAAATGACAATGATCAA
1 GATTAAACCATGAG-TCAAAAAATGAAAATGATCGA
* ** * * * *
5141826 AATTAAATTATGAGTCAGAGAATAAAAATGATTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * * *
5141861 AATTAAACTAAGAGTTAGAGAATGAAATTGATCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5141896 AATTAAACCACGAGTCAAAAAATGAAAATGAT-AA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5141930 GGATTAAACCATGAATCAAAAAATGAAAAATGAAT-GG
1 -GATTAAACCATGAGTCAAAAAATG-AAAATG-ATCGA
* * * * *
5141967 GATTAAACTAGGAGTCAAAAAATGGAAACGACCGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
** * *
5142002 GATTAAACCACAAGTCAAAAAATGAAAATGATTGG
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * *
5142037 GATTAAACCATGAGTTAGAAAATGAAAA-CAACTGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATC-GA
* * * *
5142072 GATTAAACCATAAGTTAGAAAATGAAAAAAGA-CAGA
1 GATTAAACCATGAGTCAAAAAATG-AAAATGATC-GA
* ** * * *
5142108 GATTAAACCATAAGTCAGAAAATAAAAAAATAACCAA
1 GATTAAACCATGAGTCA-AAAA-ATGAAAATGATCGA
* * ** * * *
5142145 GATTAAA-TATAAGTCAGAGGAATAAAAAAGA-CCA
1 GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* * * *
5142179 GTATTAAATCATGAGTTAGAAAATAAAAATGATC-A
1 G-ATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5142214 GAATTAAACCACGAGTCAAAATAA-CAAAATGATAG-
1 G-ATTAAACCATGAGTCAAAA-AATGAAAATGATCGA
* ** * *
5142249 GAATTAAATCACCCA-TCAAAAAAATGAAAATGACCAA
1 G-ATTAAACCA-TGAGTC-AAAAAATGAAAATGATCGA
* * *
5142286 GATTAAACCATAAGTCAAAAAATAAAAAAGA-CGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * *
5142320 GGATTAAACCATAAGTCAGAAAATGAAAAATAATTGG
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
** ** * * *
5142357 GATTAAATTACAAGTCAGAAGAATAAAAAAGATCGA
1 GATTAAACCATGAGTCA-AAAAATGAAAATGATCGA
* * * * * *
5142393 TATTAAATCATAAGTCAGAAAAT-AAAATTGACCAA
1 GATTAAACCATGAGTCAAAAAATGAAAA-TGATCGA
* * * * *
5142428 AATTAAACCATGAGTCAGAAAATCAAAATGGTAGA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * * * * *
5142463 AATTAAATCACT-AGTTAAAAAATGAAAA-CAACCA
1 GATTAAACCA-TGAGTCAAAAAATGAAAATGATCGA
*
5142497 GGATTAAACCATGAGTCAGAAAATGAAAATGAGTC-A
1 -GATTAAACCATGAGTCAAAAAATGAAAATGA-TCGA
* ** * * *
5142533 AATTAAACCACAAGTCAAAAAATGAAAA-CAACCA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* ** * *
5142567 GGATTAGACCACCAGTCAAAAAAAGAAAAACGATC-A
1 -GATTAAACCATGAGTCAAAAAATG-AAAATGATCGA
* * *
5142603 GGATTAAACCATG-GGCCAGAAATGAAAATGATCGA
1 -GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* *
5142638 GATTAAACTATGAGTCAAAAAATGAAAATGA-CAA
1 GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
* * *
5142672 GAATAAACCATGAGTTAGAAAATGAAAAT
1 GATTAAACCATGAGTCAAAAAATGAAAAT
5142701 CATAAGTCAA
Statistics
Matches: 8960, Mismatches: 2359, Indels: 1468
0.70 0.18 0.11
Matches are distributed among these distances:
26 15 0.00
27 2 0.00
28 4 0.00
29 48 0.01
30 26 0.00
31 22 0.00
32 147 0.02
33 268 0.03
34 730 0.08
35 5514 0.62
36 1625 0.18
37 301 0.03
38 71 0.01
39 31 0.00
40 28 0.00
41 27 0.00
42 4 0.00
43 26 0.00
44 26 0.00
45 17 0.00
46 4 0.00
47 8 0.00
48 3 0.00
49 10 0.00
50 3 0.00
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
GATTAAACCATGAGTCAAAAAATGAAAATGATCGA
Found at i:5142803 original size:35 final size:35
Alignment explanation
Indices: 5142764--5143162 Score: 292
Period size: 35 Copynumber: 11.3 Consensus size: 35
5142754 AACAACCAAA
* * * *
5142764 ATTAAATCACGAGTCAAGAAATGAAAATGATCGTG
1 ATTAAACCATGAGTCAAAAAATGAAAATGATCGAG
* *
5142799 ATTAAAACATGAGTCAAAAAATGAAAAACGA-CTGAG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGATC-GAG
* * * *
5142835 ATTAAACCATAAGTTAGAAAAATAAAAATGATCGCG
1 ATTAAACCATGAGTCA-AAAAATGAAAATGATCGAG
* *
5142871 ATTAAACCATGAGTTAAAAAATGAAAATGA-CGGGG
1 ATTAAACCATGAGTCAAAAAATGAAAATGATC-GAG
* ** * *
5142906 ATTAAACCATTAGTCAAAAAATGAAAACAACCCAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGATCGAG
* * * *
5142941 ATTAAACCA-CAGGTCAGAAAATGAAAACGAT-TAGG
1 ATTAAACCATGA-GTCAAAAAATGAAAATGATCGA-G
* * * *
5142976 ATTAAACTACCT-A-TCAAAAAAAAGAAAAATGATAGGG
1 ATTAAAC--CATGAGTC-AAAAAATG-AAAATGATCGAG
** *
5143013 ATTAAACCACAAGTCAAAAAATGAAAAATGA-CCATG
1 ATTAAACCATGAGTCAAAAAATG-AAAATGATCGA-G
* * *
5143049 ATTAGACCATGAGACAAAAAATGAAAATGA-CTATG
1 ATTAAACCATGAGTCAAAAAATGAAAATGATCGA-G
* *
5143084 ATTAAACCATGAGTCAAAAAATGAAAATAATCCAG
1 ATTAAACCATGAGTCAAAAAATGAAAATGATCGAG
* * * *
5143119 ATTAAACCATGAGTCAGAAAATGAAAATGAACCAA
1 ATTAAACCATGAGTCAAAAAATGAAAATGATCGAG
5143154 ATTAAACCA
1 ATTAAACCA
5143163 CAAAGATTAA
Statistics
Matches: 296, Mismatches: 50, Indels: 36
0.77 0.13 0.09
Matches are distributed among these distances:
34 3 0.01
35 178 0.60
36 89 0.30
37 26 0.09
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (35 bp):
ATTAAACCATGAGTCAAAAAATGAAAATGATCGAG
Found at i:5143122 original size:143 final size:142
Alignment explanation
Indices: 5142852--5143125 Score: 311
Period size: 143 Copynumber: 1.9 Consensus size: 142
5142842 CATAAGTTAG
* * ** * ** *
5142852 AAAAATAAAAATGATCGCGATTAAACCATGAGTTAAAAAATGAAAATGACGGGGATTAAACCATT
1 AAAAAGAAAAATGATAGCGATTAAACCACAAGTCAAAAAATGAAAATGACCAGGATTAAACCATG
* * * *
5142917 AGTCAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAGAAAATGAAAACGATTAGGATTAAA
66 AGACAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAAAAAATGAAAACAATCAGGATTAAA
5142982 CTACCTATCAAA
131 CTACCTATCAAA
* * *
5142994 AAAAAGAAAAATGATAGGGATTAAACCACAAGTCAAAAAATGAAAAATGACCATGATTAGACCAT
1 AAAAAGAAAAATGATAGCGATTAAACCACAAGTCAAAAAATG-AAAATGACCAGGATTAAACCAT
** * * *
5143059 GAGACAAAAAATGAAAATGA-CTATGATTAAACCA-TGAGTCAAAAAATGAAAATAATCCA-GAT
65 GAGACAAAAAATGAAAACAACCCA-GATTAAACCACAG-GTCAAAAAATGAAAACAAT-CAGGAT
5143121 TAAAC
127 TAAAC
5143126 CATGAGTCAG
Statistics
Matches: 108, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
142 39 0.36
143 68 0.63
144 1 0.01
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.19
Consensus pattern (142 bp):
AAAAAGAAAAATGATAGCGATTAAACCACAAGTCAAAAAATGAAAATGACCAGGATTAAACCATG
AGACAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAAAAAATGAAAACAATCAGGATTAAA
CTACCTATCAAA
Found at i:5143160 original size:178 final size:178
Alignment explanation
Indices: 5142834--5143160 Score: 435
Period size: 178 Copynumber: 1.8 Consensus size: 178
5142824 AAACGACTGA
* * * * **
5142834 GATTAAACCATAAGTTAGAAAAATAAAAATGATCGCGATTAAACCATGAGTTAAAAAATGAAAAT
1 GATTAAACCACAAGTCAGAAAAATAAAAATGACCACGATTAAACCATGAGACAAAAAATGAAAAT
* *
5142899 GACGGGGATTAAACCATTAGTCAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAGAAAATG
66 GACGAGGATTAAACCATGAGTCAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAGAAAATG
** *
5142964 AAAACGATTAGGATTAAACTACCTATCAAAAAAAAGAAAAATGATAGG
131 AAAACGACCAGAATTAAACTACCTATCAAAAAAAAGAAAAATGATAGG
* *
5143012 GATTAAACCACAAGTCA-AAAAATGAAAAATGACCATGATTAGACCATGAGACAAAAAATGAAAA
1 GATTAAACCACAAGTCAGAAAAAT-AAAAATGACCACGATTAAACCATGAGACAAAAAATGAAAA
* * * * *
5143076 TGACTATGATTAAACCATGAGTCAAAAAATGAAAATAATCCAGATTAAACCA-TGAGTCAGAAAA
65 TGACGAGGATTAAACCATGAGTCAAAAAATGAAAACAACCCAGATTAAACCACAG-GTCAGAAAA
*
5143140 TGAAAATGAACCA-AATTAAAC
129 TGAAAACG-ACCAGAATTAAAC
5143161 CACAAAGATT
Statistics
Matches: 127, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
177 7 0.06
178 118 0.93
179 2 0.02
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (178 bp):
GATTAAACCACAAGTCAGAAAAATAAAAATGACCACGATTAAACCATGAGACAAAAAATGAAAAT
GACGAGGATTAAACCATGAGTCAAAAAATGAAAACAACCCAGATTAAACCACAGGTCAGAAAATG
AAAACGACCAGAATTAAACTACCTATCAAAAAAAAGAAAAATGATAGG
Found at i:5143268 original size:21 final size:21
Alignment explanation
Indices: 5143242--5143287 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
5143232 GACTGAGAAT
*
5143242 AAATCACGAGTCAAAAAATGA
1 AAATCACAAGTCAAAAAATGA
*
5143263 AAATCATAAGTCAAAAAATGA
1 AAATCACAAGTCAAAAAATGA
5143284 AAAT
1 AAAT
5143288 GAGAGGGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.61, C:0.11, G:0.11, T:0.17
Consensus pattern (21 bp):
AAATCACAAGTCAAAAAATGA
Found at i:5144138 original size:35 final size:35
Alignment explanation
Indices: 5143364--5145206 Score: 505
Period size: 35 Copynumber: 52.8 Consensus size: 35
5143354 AAACAACAAG
* * *
5143364 GATTAAATCATGAATCAAAAAATGAAAATGATC-A
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* ** * *
5143398 GGATTAAATCATGAGTCAGGGAAT-AAAAGCGAT-GG
1 -GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGA
** * * * *
5143433 GAATTAAACTGTAAGACA-AAACATGAAAATGACCAA
1 G-ATTAAACCATGAGTCAGAAA-ATGAAAATGATCGA
* * * **
5143469 AATTAAATCATGAGTCAGAAAGA-AAAAACAATCGA
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGA
* * *
5143504 GATTAAACTATGAGTCAAAAAATGAAAATGATCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* *
5143539 GATTAAACCATGAGTCAAAAAATGAAAACGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5143574 GATTAAATCATAAGTCAGAAAATAAAAAATGA-CCA
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGA
* *
5143609 TCATTAAATCATGAGTCAGAGAAATGAAAATGATCGA
1 -GATTAAACCATGAGTCAGA-AAATGAAAATGATCGA
* * *
5143646 TATTAAATCACAT--GTCAAAAAATGAAAACT-ATTGA
1 GATTAAA-C-CATGAGTCAGAAAATGAAAA-TGATCGA
* * * ** *
5143681 GAATAAATCATGAG-C------TAAAAACCACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5143709 AACTAAATCACAT--GTCAAAAGAATGAAAAATGACCGA
1 GATTAAA-C-CATGAGTCAGAA-AATG-AAAATGATCGA
* * * * *
5143746 AATTAAATCATGAGTTAAAAAATGAAAATGATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
** * **
5143781 GATTAAACTGTGAGTCA-AAAATGAAAATGACCCC
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * * *
5143815 GTATTAAACTACGAGTTAGAAAATAAAAAAGATCGA
1 G-ATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5143851 TATTAAACTATGAGTCAGAAAATGAAAACGACCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5143886 GATTAAACCATGAGTCAAAAAATGAAAACGACCAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * ** *
5143921 GATTAAACCATGAGTCAAAAAATGAATACAATCGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * * *
5143956 GTTTAAATCGTGAGTTA-AGAAATGAAAATAATC-A
1 GATTAAACCATGAGTCAGA-AAATGAAAATGATCGA
* *
5143990 GGATTAAATCATGAGTCA-AGAAATGAAAACGA-CTGA
1 -GATTAAACCATGAGTCAGA-AAATGAAAATGATC-GA
* * * *
5144026 GATTAAATCACGAGTCA-AAAATAAAAAATGA-CCA
1 GATTAAACCATGAGTCAGAAAAT-GAAAATGATCGA
* * *
5144060 GGATTAAATCACT-AGTCAAAAAATGAAAATGA-CAAA
1 -GATTAAACCA-TGAGTCAGAAAATGAAAATGATC-GA
5144096 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* *
5144131 GATTAAACCACT-AG-CTAGAAAAAGAAAAATGACCGA
1 GATTAAACCA-TGAGTC-AGAAAATG-AAAATGATCGA
* * * * *
5144167 GATTAAA-C-TAAGTTAGAAAATGAAAACGATTGG
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* *
5144200 GATTAAACCATGAGTCAAAAAATGAAAACGATCGAAAAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCG----A
** ** ** * **
5144239 TGAAAAAAAAATGA-TC-GGGACT--AAACCAT-GA
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * ***
5144270 G-TTAGAA-AATGAATGTGACCAGTTTGAATAATGAGTCAAGA
1 GATTA-AACCATG-A-GTCA-GAAAATGAA-AATGA-TC--GA
* * * ** * *
5144311 AATGAAA--ATGA--CTG-GGATTAAAGT-A-CGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * **
5144339 G-TTAAA--A--AAT--GAAAA--ATAA-CCT-G-
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5144362 GATTAAACCACGGGACAGAAAAATGAAAA--ATACTA
1 GATTAAACCATGAGTCAG-AAAATGAAAATGAT-CGA
* * * *
5144397 TGATTAAACCATGAGTCTGAAAATGAAAACAGGT-GG
1 -GATTAAACCATGAGTCAGAAAATGAAAA-TGATCGA
* * * *
5144433 GATTAAA-CATTGAGTCAAAAAAAGAAAATGACCTA
1 GATTAAACCA-TGAGTCAGAAAATGAAAATGATCGA
* * * * *
5144468 GATTAAAGCACGAGCCAAAAAATGAAAATGA-CTAA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GA
*
5144503 GATTAAACCATGAGTCAGAAAATGGAAATGA-CTG-
1 GATTAAACCATGAGTCAGAAAATGAAAATGATC-GA
* * ** * *
5144537 GATTAAACCACCGA-TCAAAAAAACAAAAATGAACAA
1 GATTAAACCA-TGAGTC-AGAAAATGAAAATGATCGA
* * *
5144573 GATTAAACCATGAGTCAAAAAATAAAAATGACTGGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGA-TCGA
* * * *
5144609 -ATTAAACTACGAGTTAGAAAATGAAAAAGAAAAAT-GA
1 GATTAAACCATGAGTCAGAAAATGAAAATG----ATCGA
* *
5144646 TTTGGATTAAACCATGAGTCAGAAAATGAATACGATCG-
1 ----GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * * * *
5144684 GGTGTAAATCACGAGTC-GAGAAATAAAAACGATCGC
1 GAT-TAAACCATGAGTCAGA-AAATGAAAATGATCGA
* * * * *
5144720 GATTAAAACATGAGTCAAAAAATGAAGAACGTTCAA
1 GATTAAACCATGAGTCAGAAAATGAA-AATGATCGA
** ** *
5144756 GATTAAAATACAAGTCAGAAAAATGAAAATGATCGC
1 GATTAAACCATGAGTCAG-AAAATGAAAATGATCGA
* *
5144792 GATTAAACTATGAGTCCA-AAAATGAAAATGA-CAA
1 GATTAAACCATGAGT-CAGAAAATGAAAATGATCGA
* * * * *
5144826 GGATTAAACCGTGAGTCAAAAAATGAAAATAACCTA
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * ** * *
5144862 GATTAGA--TTGCATGTCAGAAAATGAAAACAATTGG
1 GATTAAACCATG-A-GTCAGAAAATGAAAATGATCGA
* ** * * *
5144897 GATTAAACTACCCA-TCAAGAAAA-AAAAATGATAGG
1 GATTAAACCA-TGAGTC-AGAAAATGAAAATGATCGA
* *
5144932 GATTAAACCACGAGTCA-AAAGATGAAAATGA-CTA
1 GATTAAACCATGAGTCAGAAA-ATGAAAATGATCGA
* * * **
5144966 TGATTAAAACATGAGTCAAAAAATGAAAATAATCCT
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5145002 GATTAAGCCATGAGTCAAAAAATGAAAATGAGCCA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* ** * ** *
5145037 GATTAACCCACAAGTCAAAAAATGAAAACAAT-TA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
** * * *
5145071 GGATTAAACCACAAGTCAAAAAAAGAAAAACGATC-A
1 -GATTAAACCATGAGTCAGAAAATG-AAAATGATCGA
* *
5145107 GGATTAAACCATGGGTCAAAAAATGAAAATGATCGA
1 -GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* * * *
5145143 GATTAAACTATGAGTCAGAAAATAAAAATCATTGA
1 GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
* *
5145178 GAATAAACCACGAGTCAGAAAATGAAAAT
1 GATTAAACCATGAGTCAGAAAATGAAAAT
5145207 CATAAGTCAA
Statistics
Matches: 1358, Mismatches: 312, Indels: 276
0.70 0.16 0.14
Matches are distributed among these distances:
23 1 0.00
24 8 0.01
25 2 0.00
26 2 0.00
27 5 0.00
28 16 0.01
29 6 0.00
30 9 0.01
31 5 0.00
32 3 0.00
33 28 0.02
34 77 0.06
35 884 0.65
36 212 0.16
37 43 0.03
38 10 0.01
39 5 0.00
40 12 0.01
41 4 0.00
42 26 0.02
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
GATTAAACCATGAGTCAGAAAATGAAAATGATCGA
Found at i:5144636 original size:42 final size:42
Alignment explanation
Indices: 5144590--5144675 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
5144580 CCATGAGTCA
* * *
5144590 AAAAATAAAAATGA-CTGGAATTAAACTACGAGTTAGAAAATG
1 AAAAAGAAAAATGATCTGG-ATTAAACCACGAGTCAGAAAATG
* *
5144632 AAAAAGAAAAATGATTTGGATTAAACCATGAGTCAGAAAATG
1 AAAAAGAAAAATGATCTGGATTAAACCACGAGTCAGAAAATG
5144674 AA
1 AA
5144676 TACGATCGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
42 35 0.92
43 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.17, T:0.21
Consensus pattern (42 bp):
AAAAAGAAAAATGATCTGGATTAAACCACGAGTCAGAAAATG
Found at i:5145185 original size:106 final size:106
Alignment explanation
Indices: 5145002--5145205 Score: 250
Period size: 106 Copynumber: 1.9 Consensus size: 106
5144992 AAATAATCCT
* * *
5145002 GATTAAGCCATGAGTCAAAAAATGAAAATGAGCCAGATTAACCCACAAGTCAAAAAATGAAAACA
1 GATTAAACCATGAGTCAAAAAATGAAAATGAGCCAGATTAAACCACAAGTCAAAAAATAAAAACA
*
5145067 ATTAGGATTAAACCACAAGTCAAAAAAAGAAAAACGATCAG
66 ATTAGGAATAAACCACAAGTCAAAAAAAGAAAAACGATCAG
* * * * ** *
5145108 GATTAAACCATGGGTCAAAAAATGAAAATGATCGAGATTAAACTATGAGTCAGAAAATAAAAATC
1 GATTAAACCATGAGTCAAAAAATGAAAATGAGCCAGATTAAACCACAAGTCAAAAAATAAAAA-C
* * *
5145173 -ATT-GAGAATAAACCACGAGTCAGAAAATGAAAA
65 AATTAG-GAATAAACCACAAGTCAAAAAAAGAAAA
5145206 TCATAAGTCA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
105 1 0.01
106 80 0.98
107 1 0.01
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.17
Consensus pattern (106 bp):
GATTAAACCATGAGTCAAAAAATGAAAATGAGCCAGATTAAACCACAAGTCAAAAAATAAAAACA
ATTAGGAATAAACCACAAGTCAAAAAAAGAAAAACGATCAG
Found at i:5145293 original size:35 final size:35
Alignment explanation
Indices: 5145254--5146104 Score: 238
Period size: 35 Copynumber: 24.2 Consensus size: 35
5145244 TGTCTTAGAT
* * *
5145254 AATGAAAACAACCAAAATTAAATCACGAGTCAAAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
* ** *
5145289 AATGAAAATAA-CAAGGATTAAATCACAAATC-AAA
1 AATGAAAACAATCAA-GATTAAATCATGAGTCAAAA
** * * * *
5145323 AATGAAAATGAGCAGGATTAAATCACGAATC-AAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
** * * * ***
5145357 AATGAAAATGACCAGGATTAAATCATGAGTTAGGG
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
**
5145392 AAT-AAAAGCAAT-GGGAATTAAA-C-TGTAAGTCAAAA
1 AATGAAAA-CAATCAAG-ATTAAATCATG--AGTCAAAA
** * * *
5145427 AATGAAAATGACCAAAATTAAATCATGAGTCAGAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
** * * *
5145462 AACAAAAACAATCGAGATTAAACCACGAGTCAAAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
** * *
5145497 AATGAAAATGATCAGGATTAAACCATGAGTCAAAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
* * * * *
5145532 AATGAAATCGATCGAGATTAAATCATAAGTCCAAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
*** *
5145567 AATGAAAAACAATCGTCATTAAATCATAAGTCAAAGA
1 AATG-AAAACAATCAAGATTAAATCATGAGTCAAA-A
** * * * *
5145604 AATGAAAATGATCGATATTAAATCA-AATGTGAAAA
1 AATGAAAACAATCAAGATTAAATCATGA-GTCAAAA
* * * *
5145639 AATGAAAACTAAT-GAGAATAAATCATGAGTTAGAA
1 AATGAAAAC-AATCAAGATTAAATCATGAGTCAAAA
* * * * * * *
5145674 AATCAAAACCATCGAA-ACTAAATCA-CATGTGAGAG
1 AATGAAAACAATC-AAGATTAAATCATGA-GTCAAAA
*
5145709 AATGAAAA-ATGATCGAA-ATTAAATCATGAGTTAAAA
1 AATGAAAACA--ATC-AAGATTAAATCATGAGTCAAAA
** * * * *
5145745 AATGAAAATGACCGAGATTAAA-CTGTGAGCCAAAA
1 AATGAAAACAATCAAGATTAAATC-ATGAGTCAAAA
* ** * * * *
5145780 AATAAAAATGA-CCAGTATTAAA-CTACGAGTTAGAA
1 AATGAAAACAATCAAG-ATTAAATC-ATGAGTCAAAA
* ** * * *
5145815 AAT-AAAAAAGATGGAGATTAAACCATGAGTTAGAA
1 AATGAAAACA-ATCAAGATTAAATCATGAGTCAAAA
** * * *
5145850 AATGAAAAGGACCGAGATTAAACCATGAGTCAAAA
1 AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
* * * * * *
5145885 AATAAAAAAAGACCAGGATTAAACCACGAGTCAAAA
1 AATGAAAACA-ATCAAGATTAAATCATGAGTCAAAA
* * * * * * *
5145921 AATGGATACAATC-GGGTTCAAATCACGAGTTAAGA
1 AATGAAAACAATCAAGATT-AAATCATGAGTCAAAA
* * *
5145956 AATGAAAACAGTC-AGTATTCAATCATGAGTCAAGA
1 AATGAAAACAATCAAG-ATTAAATCATGAGTCAAAA
* * * * *
5145991 AATGAAAACAACTGAA-ATTATATCACGAGT-TAGA
1 AATGAAAACAA-TCAAGATTAAATCATGAGTCAAAA
* * *
5146025 AAT-AAAAAAATGGCCAGGATTAAATC-TCTAGTCAAAA
1 AATGAAAACAAT---CAAGATTAAATCAT-GAGTCAAAA
* * * * *
5146062 AATGAAAACGAT-AAGGATTAAACCACGAGTTAGAA
1 AATGAAAACAATCAA-GATTAAATCATGAGTCAAAA
5146097 AATGAAAA
1 AATGAAAA
5146105 TGACTGAGAT
Statistics
Matches: 619, Mismatches: 153, Indels: 88
0.72 0.18 0.10
Matches are distributed among these distances:
32 1 0.00
33 8 0.01
34 91 0.15
35 369 0.60
36 130 0.21
37 14 0.02
38 6 0.01
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (35 bp):
AATGAAAACAATCAAGATTAAATCATGAGTCAAAA
Found at i:5145327 original size:69 final size:68
Alignment explanation
Indices: 5145254--5145381 Score: 175
Period size: 68 Copynumber: 1.9 Consensus size: 68
5145244 TGTCTTAGAT
*
5145254 AATGAAAACAACCAAAATTAAATCACGAGTCAAAAAATGAAAATAACAAGGATTAAATCACAAAT
1 AATGAAAACAACCAAAATTAAATCACGAATC-AAAAATGAAAATAACAAGGATTAAATCACAAAT
5145319 CAAA
65 CAAA
** * ** * *
5145323 AATGAAAATGAGCAGGATTAAATCACGAATCAAAAATGAAAATGACCAGGATTAAATCA
1 AATGAAAACAACCAAAATTAAATCACGAATCAAAAATGAAAATAACAAGGATTAAATCA
5145382 TGAGTTAGGG
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
68 26 0.51
69 25 0.49
ACGTcount: A:0.57, C:0.13, G:0.12, T:0.17
Consensus pattern (68 bp):
AATGAAAACAACCAAAATTAAATCACGAATCAAAAATGAAAATAACAAGGATTAAATCACAAATC
AAA
Found at i:5145329 original size:34 final size:33
Alignment explanation
Indices: 5145270--5145381 Score: 152
Period size: 34 Copynumber: 3.3 Consensus size: 33
5145260 AACAACCAAA
*
5145270 ATTAAATCACGAGTCAAAAAATGAAAATAACAAGG
1 ATTAAATCACGAATC-AAAAATGAAAATAAC-AGG
* *
5145305 ATTAAATCACAAATCAAAAATGAAAATGAGCAGG
1 ATTAAATCACGAATCAAAAATGAAAAT-AACAGG
*
5145339 ATTAAATCACGAATCAAAAATGAAAATGACCAGG
1 ATTAAATCACGAATCAAAAATGAAAAT-AACAGG
5145373 ATTAAATCA
1 ATTAAATCA
5145382 TGAGTTAGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
34 56 0.79
35 15 0.21
ACGTcount: A:0.55, C:0.12, G:0.13, T:0.19
Consensus pattern (33 bp):
ATTAAATCACGAATCAAAAATGAAAATAACAGG
Found at i:5145567 original size:36 final size:35
Alignment explanation
Indices: 5145270--5145892 Score: 274
Period size: 35 Copynumber: 17.8 Consensus size: 35
5145260 AACAACCAAA
** * *
5145270 ATTAAATCACGAGTCAAAAAATGAAAAT-AACAAGG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGA-G
* * *
5145305 ATTAAATCACAAATC-AAAAATGAAAATGAGC-AGG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGA-G
* *
5145339 ATTAAATCACGAA-TC-AAAAATGAAAATGA-CCAGG
1 ATTAAATCA-TAAGTCAAAAAATGAAAATGATCGA-G
* * *** *
5145373 ATTAAATCATGAGTTAGGGAAT-AAAA-GCAAT-GGG
1 ATTAAATCATAAGTCAAAAAATGAAAATG--ATCGAG
* * * *
5145407 AATTAAA-CTGTAAGTCAAAAAATGAAAATGACCAAA
1 -ATTAAATC-ATAAGTCAAAAAATGAAAATGATCGAG
* * ** **
5145443 ATTAAATCATGAGTCAGAAAACAAAAACAATCGAG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGAG
* **
5145478 ATTAAACCACGAGTCAAAAAATGAAAATGATC-AGG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGA-G
* *
5145513 ATTAAACCATGAGTCAAAAAATG-AAATCGATCGAG
1 ATTAAATCATAAGTCAAAAAATGAAAAT-GATCGAG
* ** **
5145548 ATTAAATCATAAGTCCAAAAATGAAAAACAATCGTC
1 ATTAAATCATAAGTCAAAAAATG-AAAATGATCGAG
*
5145584 ATTAAATCATAAGTCAAAGAAATGAAAATGATCGAT
1 ATTAAATCATAAGTCAAA-AAATGAAAATGATCGAG
* *
5145620 ATTAAATCA-AATGTGAAAAAATGAAAACTAAT-GAG
1 ATTAAATCATAA-GTCAAAAAATGAAAA-TGATCGAG
* * * * * ** *
5145655 AATAAATCATGAGTTAGAAAATCAAAACCATCGAA
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGAG
* * * * * * *
5145690 ACTAAATCACATGTGAGAGAATGAAAAATGATCGAA
1 ATTAAATCATAAGTCAAAAAATG-AAAATGATCGAG
* * *
5145726 ATTAAATCATGAGTTAAAAAATGAAAATGACCGAG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGAG
* * * * *
5145761 ATTAAA-CTGTGAGCCAAAAAATAAAAATGA-CCAG
1 ATTAAATC-ATAAGTCAAAAAATGAAAATGATCGAG
* * * * *
5145795 TATTAAA-C-TACGAGTTAGAAAATAAAAAAGATGGAG
1 -ATTAAATCATA--AGTCAAAAAATGAAAATGATCGAG
* * * * * *
5145831 ATTAAACCATGAGTTAGAAAATGAAAAGGACCGAG
1 ATTAAATCATAAGTCAAAAAATGAAAATGATCGAG
* * *
5145866 ATTAAACCATGAGTCAAAAAATAAAAA
1 ATTAAATCATAAGTCAAAAAATGAAAA
5145893 AAGACCAGGA
Statistics
Matches: 455, Mismatches: 101, Indels: 64
0.73 0.16 0.10
Matches are distributed among these distances:
33 4 0.01
34 70 0.15
35 289 0.64
36 82 0.18
37 10 0.02
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (35 bp):
ATTAAATCATAAGTCAAAAAATGAAAATGATCGAG
Found at i:5145624 original size:72 final size:71
Alignment explanation
Indices: 5145513--5145646 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 71
5145503 AATGATCAGG
* *
5145513 ATTAAACCATGAGTCAAAAAATGAAATCGATCGAGATTAAATCATAA-GTCCAAAAATGAAAAAC
1 ATTAAACCATAAGTCAAAAAATGAAATCGATCGAGATTAAATCA-AATGTCAAAAAATGAAAAAC
5145577 AATCGTC
65 AATCGTC
* * *
5145584 ATTAAATCATAAGTCAAAGAAATGAAAAT-GATCGATATTAAATCAAATGTGAAAAAATGAAAA
1 ATTAAACCATAAGTCAAA-AAATG-AAATCGATCGAGATTAAATCAAATGTCAAAAAATGAAAA
5145647 CTAATGAGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
71 18 0.33
72 33 0.60
73 4 0.07
ACGTcount: A:0.54, C:0.11, G:0.13, T:0.22
Consensus pattern (71 bp):
ATTAAACCATAAGTCAAAAAATGAAATCGATCGAGATTAAATCAAATGTCAAAAAATGAAAAACA
ATCGTC
Found at i:5145661 original size:107 final size:106
Alignment explanation
Indices: 5145408--5145664 Score: 238
Period size: 107 Copynumber: 2.4 Consensus size: 106
5145398 AGCAATGGGA
** ** * * * *
5145408 ATTAAACTGTAAGTCAAAAAATGAAAATGA-CCAAAATTAAATCATGAGT-CAGAAAA-CAAAAA
1 ATTAAACCATAAGTCAAAAAATGAAAACAATCGAGAA-TAAATCATAAGTCCA-AAAATGAAAAA
* *
5145470 CAATCGAGATTAAACCACGAGTCAAAAAATGAAAATGATCAGG
64 CAATCGACATTAAACCACAAGTCAAAAAATGAAAATGATCAGG
* * * *
5145513 ATTAAACCATGAGTCAAAAAATGAAATCGATCGAGATTAAATCATAAGTCCAAAAATGAAAAACA
1 ATTAAACCATAAGTCAAAAAATGAAAACAATCGAGAATAAATCATAAGTCCAAAAATGAAAAACA
* * * *
5145578 ATCGTCATTAAATCATAAGTCAAAGAAATGAAAATGATC-GAT
66 ATCGACATTAAACCACAAGTCAAA-AAATGAAAATGATCAG-G
* *
5145620 ATTAAATCA-AATGTGAAAAAATGAAAACTAAT-GAGAATAAATCAT
1 ATTAAACCATAA-GTCAAAAAATGAAAAC-AATCGAGAATAAATCAT
5145665 GAGTTAGAAA
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
105 40 0.33
106 33 0.27
107 48 0.39
108 2 0.02
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.21
Consensus pattern (106 bp):
ATTAAACCATAAGTCAAAAAATGAAAACAATCGAGAATAAATCATAAGTCCAAAAATGAAAAACA
ATCGACATTAAACCACAAGTCAAAAAATGAAAATGATCAGG
Found at i:5146111 original size:106 final size:106
Alignment explanation
Indices: 5145990--5146211 Score: 261
Period size: 106 Copynumber: 2.1 Consensus size: 106
5145980 ATGAGTCAAG
* * * * *
5145990 AAATGAAAACAACTGAAATTATATCACGAGTTAGAAATAA-AAAAATGGCC-AGGATTAAATCTC
1 AAATGAAAACAACTGAAATTAAACCACGAGCTAGAAA-AAGAAAAATGACCGA-GATTAAA-CTA
* *
5146053 T-AGTCAAAAAATGAAAACGATAAGGATTAAACCACGAGTTAGA
63 TGAGTCAAAAAATGAAAACGATAAGGATTAAACCACAAGTCAGA
** * *
5146096 AAATGAAAATGACTGAGATTAAACCACTAGCTAGAAAAAGAAAAATGACCGAGATTAAACTATGA
1 AAATGAAAACAACTGAAATTAAACCACGAGCTAGAAAAAGAAAAATGACCGAGATTAAACTATGA
* ** *
5146161 GTCAGAAAATGAAAACGATTGGGATTAAACCACAAGTCATA
66 GTCAAAAAATGAAAACGATAAGGATTAAACCACAAGTCAGA
5146202 AAATGAAAAC
1 AAATGAAAAC
5146212 GATCAAAAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
105 5 0.05
106 91 0.94
107 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (106 bp):
AAATGAAAACAACTGAAATTAAACCACGAGCTAGAAAAAGAAAAATGACCGAGATTAAACTATGA
GTCAAAAAATGAAAACGATAAGGATTAAACCACAAGTCAGA
Found at i:5146116 original size:35 final size:35
Alignment explanation
Indices: 5146054--5146619 Score: 210
Period size: 35 Copynumber: 16.5 Consensus size: 35
5146044 TTAAATCTCT
* * *
5146054 AGTCAAAAAATGAAAACGA-TAAGGATTAAACCACG
1 AGTCAGAAAATGAAAATGACTGA-GATTAAACCACG
* *
5146089 AGTTAGAAAATGAAAATGACTGAGATTAAACCACT
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
* * * *
5146124 AG-CTAGAAAAAGAAAAATGACCGAGATTAAACTATG
1 AGTC-AGAAAATG-AAAATGACTGAGATTAAACCACG
* * * *
5146160 AGTCAGAAAATGAAAACGATTGGGATTAAACCACA
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
* * * *
5146195 AGTCATAAAATGAAAACGA-TCA-A--AAA--ATG
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
*** *
5146224 AAAAAAAAAAT-AATCAA-GACT---A---AACCACG
1 AGTCAGAAAATGAA--AATGACTGAGATTAAACCACG
* ** * * * * **
5146253 AGTTAGAAAATGAATGTGAC-CAGTTTGAATCTTG
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
* * **
5146287 AGTCA-ATAAATGAAAAAGATTGAGATTAAAGTACG
1 AGTCAGA-AAATGAAAATGACTGAGATTAAACCACG
* * ** *
5146322 AGTTAAAAAATGAAAAACAACATG-GATTAAACCATG
1 AGTCAGAAAATG-AAAATGAC-TGAGATTAAACCACG
* * * * *
5146358 AGTCTGAAAA-CAAAATCTACTGTGATTAAACTACG
1 AGTCAGAAAATGAAAAT-GACTGAGATTAAACCACG
* ** * * * *
5146393 AGTCAAAAAATGAAAACAAGTGGGATT-AAGCATTG
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCA-CG
* * * * *
5146428 ATTCATAAAA-AAAAATGACCT-AGATTAAAGCACA
1 AGTCAGAAAATGAAAATGA-CTGAGATTAAACCACG
* * * *
5146462 AGCCAGAAAATGAAAACGACTAAGATTAAACCATG
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
* * *
5146497 AGTCAGAAAATGGAAATGACTGGGATTAAACCACC
1 AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
* * *
5146532 AGTCAGAAAAAAGAAAACTGAAT-AGAATTAAACCATG
1 AGTCAG-AAAATGAAAA-TGACTGAG-ATTAAACCACG
*
5146569 AGTCAGAAAATGAAAATGACTG-GAATTAAACTACG
1 AGTCAGAAAATGAAAATGACTGAG-ATTAAACCACG
*
5146604 AGTTAGAAAATGAAAA
1 AGTCAGAAAATGAAAA
5146620 CGATCAAAAA
Statistics
Matches: 386, Mismatches: 111, Indels: 68
0.68 0.20 0.12
Matches are distributed among these distances:
27 2 0.01
28 3 0.01
29 22 0.06
30 5 0.01
31 3 0.01
33 2 0.01
34 45 0.12
35 208 0.54
36 74 0.19
37 22 0.06
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.19
Consensus pattern (35 bp):
AGTCAGAAAATGAAAATGACTGAGATTAAACCACG
Found at i:5146134 original size:71 final size:73
Alignment explanation
Indices: 5146054--5146214 Score: 174
Period size: 71 Copynumber: 2.3 Consensus size: 73
5146044 TTAAATCTCT
* *
5146054 AGTCAAAAAATGAAAACGAT-A-AG-GATTAAACCACGAGTTAGAAAATGAAAATGACTGAGATT
1 AGTCAAAAAATGAAAACGATGACAGAGATTAAACCACGAGTCAGAAAATGAAAACGACTGAGATT
*
5146116 AAACCACT
66 AAACCACA
* * * * *
5146124 AG-CTAGAAAAA-GAAAA--ATGACCGAGATTAAACTATGAGTCAGAAAATGAAAACGATTGGGA
1 AGTC-A-AAAAATGAAAACGATGACAGAGATTAAACCACGAGTCAGAAAATGAAAACGACTGAGA
5146185 TTAAACCACA
64 TTAAACCACA
*
5146195 AGTCATAAAATGAAAACGAT
1 AGTCAAAAAATGAAAACGAT
5146215 CAAAAAATGA
Statistics
Matches: 73, Mismatches: 9, Indels: 15
0.75 0.09 0.15
Matches are distributed among these distances:
68 2 0.03
69 2 0.03
70 13 0.18
71 53 0.73
72 1 0.01
73 2 0.03
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (73 bp):
AGTCAAAAAATGAAAACGATGACAGAGATTAAACCACGAGTCAGAAAATGAAAACGACTGAGATT
AAACCACA
Found at i:5146679 original size:36 final size:35
Alignment explanation
Indices: 5146638--5147070 Score: 160
Period size: 35 Copynumber: 12.2 Consensus size: 35
5146628 AAATGAAAAA
*
5146638 AAAATGATTGGGATTAAACCATGAGTCAGAAAAATG
1 AAAATGATCGGGATTAAACCATGAGTCA-AAAAATG
* ** * *
5146674 AAAATGACCGTAATTAAACCTTGAGTTAAAAAATG
1 AAAATGATCGGGATTAAACCATGAGTCAAAAAATG
** * *** * ** *
5146709 AAAACAACCCAAAGTAAACCACAAGTCAGAAAATG
1 AAAATGATCGGGATTAAACCATGAGTCAAAAAATG
** * ** *
5146744 AAAATGATTAGGATTAAACTACCCA-TCAAAAAAAG
1 AAAATGATCGGGATTAAACCA-TGAGTCAAAAAATG
* *
5146779 AAAAATGATAGGGATTAAACCATGAGTCAAAAAATAA
1 -AAAATGATCGGGATTAAACCATGAGTCAAAAAAT-G
* * ** ** *
5146816 AAAACGACCATGA-TAAGACCACAAGTCAAAAAATA
1 AAAATGATCGGGATTAA-ACCATGAGTCAAAAAATG
** *
5146851 AAAATGA-CTATGATTAAACCAAGAGTCAAAAAAAAT-
1 AAAATGATC-GGGATTAAACCATGAGTC--AAAAAATG
** *
5146887 AAAAT-ACTCCTGATTAAACCATGTGTCAAAAAAATG
1 AAAATGA-TCGGGATTAAACCATGAGTC-AAAAAATG
* * *** *
5146923 AGAATGAGCCAAATTAAACCATAAGTCAAAAAATG
1 AAAATGATCGGGATTAAACCATGAGTCAAAAAATG
* ** * ** * **
5146958 TAAACAACCAAGATTAAACTACCAGTCGAAAAAA-G
1 AAAATGATCGGGATTAAACCATGAGTC-AAAAAATG
* * * *
5146993 AAAAACGATCAGGATTAAACCATCG-GTTAGAAAATG
1 -AAAATGATCGGGATTAAACCAT-GAGTCAAAAAATG
* * * *
5147029 AAAATGATCGAGATTAAACTATGAGTCAGAAAATA
1 AAAATGATCGGGATTAAACCATGAGTCAAAAAATG
5147064 AAAATGA
1 AAAATGA
5147071 CTGAGAATAA
Statistics
Matches: 300, Mismatches: 79, Indels: 37
0.72 0.19 0.09
Matches are distributed among these distances:
34 2 0.01
35 149 0.50
36 140 0.47
37 9 0.03
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (35 bp):
AAAATGATCGGGATTAAACCATGAGTCAAAAAATG
Found at i:5146740 original size:128 final size:129
Alignment explanation
Indices: 5146510--5146747 Score: 291
Period size: 128 Copynumber: 1.9 Consensus size: 129
5146500 CAGAAAATGG
* *
5146510 AAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAACTGAATAGAATTAAACCATGAGTCAG
1 AAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAACTGAACAGAATTAAACCATGAGTCAA
** *** * * * *
5146575 AAAATGAAAATGACTGGAATTAAACTACGAGTTAGAAAATGAAAACGATCAAAAAATGAAAAAA
66 AAAATGAAAACAACCCAAAGTAAACCACAAGTCAGAAAATGAAAACGATCAAAAAATGAAAAAA
* ** * * * *
5146639 AAATGATTGGGATTAAACCATGAGTCAGAAAAATGAAAA-TG-ACCGTAATTAAACCTTGAGTTA
1 AAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAACTGAACAG-AATTAAACCATGAGTCA
5146702 AAAAATGAAAACAACCCAAAGTAAACCACAAGTCAGAAAATGAAAA
65 AAAAATGAAAACAACCCAAAGTAAACCACAAGTCAGAAAATGAAAA
5146748 TGATTAGGAT
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
127 2 0.02
128 53 0.59
129 35 0.39
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.18
Consensus pattern (129 bp):
AAATGACTGGGATTAAACCACCAGTCAGAAAAAAGAAAACTGAACAGAATTAAACCATGAGTCAA
AAAATGAAAACAACCCAAAGTAAACCACAAGTCAGAAAATGAAAACGATCAAAAAATGAAAAAA
Found at i:5146919 original size:37 final size:37
Alignment explanation
Indices: 5146771--5146920 Score: 127
Period size: 36 Copynumber: 4.2 Consensus size: 37
5146761 ACTACCCATC
* * *
5146771 AAAAAAAGAAAAATGA-TAGGGATTAAACCATGAGTCA
1 AAAAAAATAAAAATGACTA-TGATTAAACCAAGAGTCA
* * *
5146808 AAAAATA-AAAAACGACCATGA-TAAGACCACA-AGTC-
1 AAAAAAATAAAAATGACTATGATTAA-ACCA-AGAGTCA
5146843 -AAAAAATAAAAATGACTATGATTAAACCAAGAGTCA
1 AAAAAAATAAAAATGACTATGATTAAACCAAGAGTCA
* * *
5146879 AAAAAAAT-AAAAT-ACTCCTGATTAAACCATGTGTCA
1 AAAAAAATAAAAATGACT-ATGATTAAACCAAGAGTCA
5146915 AAAAAA
1 AAAAAA
5146921 TGAGAATGAG
Statistics
Matches: 93, Mismatches: 11, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
34 6 0.06
35 26 0.28
36 47 0.51
37 14 0.15
ACGTcount: A:0.57, C:0.13, G:0.12, T:0.17
Consensus pattern (37 bp):
AAAAAAATAAAAATGACTATGATTAAACCAAGAGTCA
Found at i:5147103 original size:35 final size:35
Alignment explanation
Indices: 5147018--5147103 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 35
5147008 TAAACCATCG
* * **
5147018 GTTAGAAAATGAAAATGATCGAGATTAAACTATGA
1 GTTAGAAAATGAAAATGATCGAGAATAAACCACAA
* *
5147053 GTCAGAAAATAAAAATGA-CTGAGAATAAACCACAA
1 GTTAGAAAATGAAAATGATC-GAGAATAAACCACAA
*
5147088 GTTAGAAATTGAAAAT
1 GTTAGAAAATGAAAAT
5147104 TATAAGTTAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
34 1 0.02
35 40 0.98
ACGTcount: A:0.52, C:0.08, G:0.17, T:0.22
Consensus pattern (35 bp):
GTTAGAAAATGAAAATGATCGAGAATAAACCACAA
Found at i:5147206 original size:35 final size:35
Alignment explanation
Indices: 5147154--5147228 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 35
5147144 CTTAGATAAT
*
5147154 GAAAACAACCAAAATTAAATCACGAGTCAAAAAAA
1 GAAAACAACCAAAATTAAATCACGAATCAAAAAAA
* * *
5147189 GAAAACAA-CAATGATTAAATCACGAATCAGAAAAT
1 GAAAACAACCAA-AATTAAATCACGAATCAAAAAAA
5147224 GAAAA
1 GAAAA
5147229 TGACCAGGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 3 0.09
35 32 0.91
ACGTcount: A:0.61, C:0.15, G:0.11, T:0.13
Consensus pattern (35 bp):
GAAAACAACCAAAATTAAATCACGAATCAAAAAAA
Found at i:5147240 original size:35 final size:35
Alignment explanation
Indices: 5147154--5147242 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 35
5147144 CTTAGATAAT
* *
5147154 GAAAACAACCAA-AATTAAATCACGAGTCAAAAAAA
1 GAAAACAA-CAAGGATTAAATCACGAATCAAAAAAA
* * *
5147189 GAAAACAACAATGATTAAATCACGAATCAGAAAAT
1 GAAAACAACAAGGATTAAATCACGAATCAAAAAAA
** *
5147224 GAAAATGACCAGGATTAAA
1 GAAAACAACAAGGATTAAA
5147243 ATATGAGTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
34 3 0.07
35 42 0.93
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (35 bp):
GAAAACAACAAGGATTAAATCACGAATCAAAAAAA
Found at i:5147776 original size:71 final size:67
Alignment explanation
Indices: 5147654--5147962 Score: 205
Period size: 71 Copynumber: 4.4 Consensus size: 67
5147644 AAATGACTAA
* * * * ** **
5147654 GATTAAACCATGAGTTAGAAAATGGAAATGACCAGGATTAAATCACCAGTCAGAAAACAAAAAAT
1 GATTAAACCATAAGTCAAAAAAT-GAAA-AACCAAAATTAAATCATGAGTCAGAAAACAAAAAA-
5147719 GAACAG
63 -AACAG
** * **
5147725 GATTAAAACCATGGGTCAAAAAATGAAACAACCAAAATTAAATCATGAGTCAAAAAATGAAAAAA
1 GATT-AAACCATAAGTCAAAAAATGAAA-AACCAAAATTAAATCATGAGTCAGAAAACAAAAAAA
5147790 ACAAG
64 AC-AG
** ** *
5147795 GATTAAA--ATCAACGAATC-AAAAATGAAAATTACCAGGATTAAATCATGAGTCAGGGAA-TAA
1 GATTAAACCAT-AA-G--TCAAAAAATGAAAA--ACCAAAATTAAATCATGAGTCAGAAAACAAA
* *
5147856 AATAATAG
60 AAAAACAG
* * *
5147864 GAATTAAATCGTAAGTCAAAAAAT-AAAAATGGCTAAAATTAAATCATGAGTCAGAAAACAAAAA
1 G-ATTAAACCATAAGTCAAAAAATGAAAAA---CCAAAATTAAATCATGAGTCAGAAAACAAAAA
*
5147928 CAACAG
62 AAACAG
5147934 AGATTAAACCATAAGTCAAAAAATGAAAA
1 -GATTAAACCATAAGTCAAAAAATGAAAA
5147963 TGATCAGGAT
Statistics
Matches: 187, Mismatches: 33, Indels: 36
0.73 0.13 0.14
Matches are distributed among these distances:
66 1 0.01
67 2 0.01
68 6 0.03
69 38 0.20
70 57 0.30
71 66 0.35
72 17 0.09
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.18
Consensus pattern (67 bp):
GATTAAACCATAAGTCAAAAAATGAAAAACCAAAATTAAATCATGAGTCAGAAAACAAAAAAAAC
AG
Found at i:5148672 original size:35 final size:35
Alignment explanation
Indices: 5147286--5148675 Score: 341
Period size: 35 Copynumber: 39.5 Consensus size: 35
5147276 ACTGTAAGTT
* * * * *
5147286 AAAAAATGAAAATGACCAAAATTAAATCATGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
** ** * *
5147321 AAAAAACAAAAACAACCGAGATTAAACCACAAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* ***
5147356 AAAAAATGAAAATGATCAAGATTAAACTGTGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * *
5147391 AAAAAATGAAAATGATCGAGACTAAACGACGAGTT
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * * * * **
5147426 AAAAAATG--AATGTAACCAGTTTGAATCATAAGTC
1 AAAAAATGAAAATG-ATCGAGATTAAACCACGAGTC
** * * * ** * *
5147460 AATTAATAAAAAAGA-CTGGGATTAAAGTATGAGTT
1 AAAAAATGAAAATGATC-GAGATTAAACCACGAGTC
** * * *
5147495 AAAAAATGAAAAACAACCTG-GATTAAACCATGAGTT
1 AAAAAATG-AAAATGATC-GAGATTAAACCACGAGTC
* ** * * *
5147531 AGAAAACAAAAACT-A-CTGTGATTAAACTACAAGTC
1 AAAAAATGAAAA-TGATC-GAGATTAAACCACGAGTC
* ** * * *
5147566 AGAAAATGAAAACAAGT-GGGATT-AAGCATTGAGTC
1 AAAAAATGAAAATGA-TCGAGATTAAACCA-CGAGTC
* * * * *
5147601 AGAAAA--AAAATGACCTAGATTAAAGCACGAGCC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * *
5147634 AAAAAAATGAAAATGA-CTAAGATTAAACCATGAGTT
1 -AAAAAATGAAAATGATC-GAGATTAAACCACGAGTC
* * * * *
5147670 AGAAAATGGAAATGA-CCAGGATTAAATCACCAGTC
1 AAAAAATGAAAATGATCGA-GATTAAACCACGAGTC
* * * *
5147705 AGAAAACA-AAAAATGAAC-AGGATTAAAACCATGGGTC
1 A-AAAA-ATGAAAATGATCGA-GATT-AAACCACGAGTC
* * * * *
5147742 AAAAAATGAAACA--ACCAAAATTAAATCATGAGTC
1 AAAAAATGAAA-ATGATCGAGATTAAACCACGAGTC
* * * * *
5147776 AAAAAATGAAAA-AAACAAGGATTAAAATCAACGAATC
1 AAAAAATGAAAATGATCGA-GATT-AAA-CCACGAGTC
* * * *
5147813 -AAAAATGAAAATTA-CCAGGATTAAATCATGAGTC
1 AAAAAATGAAAATGATCGA-GATTAAACCACGAGTC
*** * * * ***
5147847 AGGGAAT-AAAATAATAG-GAATTAAATCGTAAGTC
1 AAAAAATGAAAATGATCGAG-ATTAAACCACGAGTC
* * * * * *
5147881 AAAAAATAAAAATG-GCTAAAATTAAATCATGAGTC
1 AAAAAATGAAAATGATC-GAGATTAAACCACGAGTC
* * ** * **
5147916 AGAAAA-CAAAAACAACAGAGATTAAACCATAAGTC
1 AAAAAATGAAAATGATC-GAGATTAAACCACGAGTC
**
5147951 AAAAAATGAAAATGATC-AGGATTAAACCGTGAGTC
1 AAAAAATGAAAATGATCGA-GATTAAACCACGAGTC
* * *
5147986 AAAAAATGAAAACGATCGAGATTAAATCACAAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
** * ** * *
5148021 AGGAAAAATGAAAAACAACCGTCATTAAATCATGAGTC
1 A--AAAAATG-AAAATGATCGAGATTAAACCACGAGTC
* * *
5148059 AGAGAAATGAAAATGATCGATATTAAATCAC-ATGTC
1 A-AAAAATGAAAATGATCGAGATTAAACCACGA-GTC
* * * * * *
5148095 AAAAATTAAAAACT-A-CTTAGAATAAATCATGAGTC
1 AAAAAATGAAAA-TGATC-GAGATTAAACCACGAGTC
* * ** * * * * *
5148130 AGAAAATCAAAACCACCAAAACTAAATCAC-ATGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGA-GTC
* * * * * * *
5148165 AGAGAATGAAAAATGACCGAAATTAAATCATGAGTT
1 AAAAAATG-AAAATGATCGAGATTAAACCACGAGTC
* * * *
5148201 AAAAAATAAAAATGATCGGGATTAAACTATGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * *
5148236 AAAAAATGAAAATGACCCG-GATTAAACTACGAGTT
1 AAAAAATGAAAATGA-TCGAGATTAAACCACGAGTC
* * * **** *
5148271 AGAAAATAAAAAAGATCGAGATTAAATTGTGAATC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * * *
5148306 AAAAAATGAAAACGACCAAGATTAAACCATGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * *
5148341 AAAAAATAAAAACGA-CCAGGATTAAACCACGAGTC
1 AAAAAATGAAAATGATCGA-GATTAAACCACGAGTC
* ** * * *
5148376 AAAAAATGAATACAATCGAGTTTAAATCACGAGTT
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* ** * * * *
5148411 AAGAAATGAAAACAATCGGGGTTAAATCATGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * * * * * * *
5148446 AAGAAACGACAACGA-CTAATATTAAATCACGAATC
1 AAAAAATGAAAATGATC-GAGATTAAACCACGAGTC
* * * *
5148481 AGAAATAA--AAAATGACCGGGATTAAATCACTAGTC
1 A-AAA-AATGAAAATGATCGAGATTAAACCACGAGTC
* ** * *
5148516 AAAAAATAAAAATGATAAAGATTAAACCACAAGTT
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* * *
5148551 AAAAAATAAAAATGACCGAGATTAAACCACTAG-C
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
* *
5148585 TAGAAAAA-GAAAAATGATCGAGATTAAA-CATTGAGTT
1 -A-AAAAATG-AAAATGATCGAGATTAAACCA-CGAGTC
* * *
5148622 AGAAAATGAAAATGATTGGGATTAAACCACGAGTC
1 AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
5148657 AAAAAATGAAAATGATCGA
1 AAAAAATGAAAATGATCGA
5148676 AAAATGAAAA
Statistics
Matches: 1006, Mismatches: 279, Indels: 140
0.71 0.20 0.10
Matches are distributed among these distances:
33 21 0.02
34 102 0.10
35 643 0.64
36 180 0.18
37 38 0.04
38 22 0.02
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (35 bp):
AAAAAATGAAAATGATCGAGATTAAACCACGAGTC
Found at i:5148848 original size:37 final size:36
Alignment explanation
Indices: 5148785--5148858 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 36
5148775 CGTGTACGTT
*
5148785 AAAAAATGAAAAACAACCTGATTTAAAACCATGAGTCA
1 AAAAAATGAAAAACAACCGGATTT-AAA-CATGAGTCA
*
5148823 AAAAAATG-AAAACAAGCGGGA-TTAAACATGAGTCA
1 AAAAAATGAAAAACAA-CCGGATTTAAACATGAGTCA
5148858 A
1 A
5148859 GAAACAGAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
35 10 0.30
36 3 0.09
37 9 0.27
38 11 0.33
ACGTcount: A:0.55, C:0.14, G:0.15, T:0.16
Consensus pattern (36 bp):
AAAAAATGAAAAACAACCGGATTTAAACATGAGTCA
Found at i:5148958 original size:36 final size:37
Alignment explanation
Indices: 5148897--5148981 Score: 86
Period size: 36 Copynumber: 2.3 Consensus size: 37
5148887 AGCACGAGCC
* * *
5148897 AGAAAATGGAAATCGACCAAGATTAAAC-CATGAGTT
1 AGAAAATGAAAATCGACCAAGATTAAACTAACGAGTT
*
5148933 AGAAAATGAAAAT-GA-CACAGAATTAAGCTAACGAGTT
1 AGAAAATGAAAATCGACCA-AG-ATTAAACTAACGAGTT
*
5148970 AGAAAATAAAAA
1 AGAAAATGAAAA
5148982 CGGTATAAAN
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
34 2 0.05
35 4 0.10
36 18 0.44
37 17 0.41
ACGTcount: A:0.54, C:0.11, G:0.18, T:0.18
Consensus pattern (37 bp):
AGAAAATGAAAATCGACCAAGATTAAACTAACGAGTT
Found at i:5150236 original size:33 final size:34
Alignment explanation
Indices: 5150181--5150244 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
5150171 TTTTCTAATG
*
5150181 CATAGTTAAATACGAGTCATTTTCATTTTTTGAT
1 CATAGTTAAATACCAGTCATTTTCATTTTTTGAT
*
5150215 CATAGTT-AATCCCAGTCATTTTCATTTTTT
1 CATAGTTAAATACCAGTCATTTTCATTTTTT
5150245 AACTCGTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.27, C:0.16, G:0.09, T:0.48
Consensus pattern (34 bp):
CATAGTTAAATACCAGTCATTTTCATTTTTTGAT
Found at i:5150502 original size:35 final size:35
Alignment explanation
Indices: 5150411--5150511 Score: 102
Period size: 34 Copynumber: 2.9 Consensus size: 35
5150401 GACGGTTGTT
* *
5150411 TTTTCATTTTTGACTTGTGATTTAAT-CTCGATCG
1 TTTTAATTTTTGACTTGTGGTTTAATCCTCGATCG
* ***
5150445 TTTTCATTTTTGACTCACGGTTTAATCCT-GATCAG
1 TTTTAATTTTTGACTTGTGGTTTAATCCTCGATC-G
5150480 -TTTAATTTTTTGACTTGTGGTTTAAT-CTCGAT
1 TTTTAA-TTTTTGACTTGTGGTTTAATCCTCGAT
5150512 TGCCTTTGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
34 32 0.58
35 23 0.42
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (35 bp):
TTTTAATTTTTGACTTGTGGTTTAATCCTCGATCG
Found at i:5150674 original size:35 final size:36
Alignment explanation
Indices: 5150594--5150681 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
5150584 CTTTTATTCC
*
5150594 CTGACTCATGATTTAATCCTAGTCAGTTTCATTTTT
1 CTGACTCGTGATTTAATCCTAGTCAGTTTCATTTTT
* *
5150630 CTGATTCGTGATTTAATCCTTA-T-TGTTTTCA-TTTT
1 CTGACTCGTGATTTAATCC-TAGTCAG-TTTCATTTTT
*
5150665 CTGACTCGTGCTTTAAT
1 CTGACTCGTGATTTAAT
5150682 TTTGGTTGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
35 20 0.44
36 23 0.51
37 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (36 bp):
CTGACTCGTGATTTAATCCTAGTCAGTTTCATTTTT
Found at i:5150819 original size:35 final size:35
Alignment explanation
Indices: 5150745--5150819 Score: 80
Period size: 35 Copynumber: 2.1 Consensus size: 35
5150735 CTGACTTATG
* ** **
5150745 ATTTTCATTTTTCGACTCGTGGTTTTTTTTCATTC
1 ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
*
5150780 ATTTTCATTTTTTGACTCATGGTTTAATCCCAATT-
1 ATTTTCATTTTTCGACTCATGGTTTAATCCC-ATTC
5150815 ATTTT
1 ATTTT
5150820 TCTTTTCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
35 30 0.91
36 3 0.09
ACGTcount: A:0.17, C:0.16, G:0.09, T:0.57
Consensus pattern (35 bp):
ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
Found at i:5150910 original size:35 final size:35
Alignment explanation
Indices: 5150871--5151018 Score: 111
Period size: 35 Copynumber: 4.2 Consensus size: 35
5150861 TTAATTCCAA
* *
5150871 TCATTTTCATTTTTTGACTCATGGTTTAGTCATAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCATAG
* * ** * **
5150906 TCATTTTTATTTTTCTAACTGGTGGCTTAATCACGG
1 TCATTTTCATTTTT-TGACTCATGGTTTAATCATAG
*
5150942 TC-TTTTCCATTTTTTGACTCATGGTTTAATCTTAG
1 TCATTTT-CATTTTTTGACTCATGGTTTAATCATAG
* * * * * *
5150977 TCGTTTCCATTTTTTGGCTCGTGCTTTGATC-TAAG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCAT-AG
5151012 TCATTTT
1 TCATTTT
5151019 TTTTGACCAA
Statistics
Matches: 85, Mismatches: 24, Indels: 8
0.73 0.21 0.07
Matches are distributed among these distances:
34 1 0.01
35 60 0.71
36 24 0.28
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCATAG
Found at i:5151837 original size:36 final size:35
Alignment explanation
Indices: 5151306--5152699 Score: 460
Period size: 35 Copynumber: 39.7 Consensus size: 35
5151296 TAGCTAGTGG
* * *
5151306 TTTACATCTCGATCATTTCCATTTTTTTGACTCGT-A
1 TTTA-ATCTCGATCATTTTCA-TTTTCTGACTCATGA
** * *
5151342 GTTTAATCT-TTTCGTTTTCATTTTTTGACT-AGTGA
1 -TTTAATCTCGATCATTTTCATTTTCTGACTCA-TGA
* *
5151377 TTTAATCTTGGTCACTTCTT-A-TTTCTGACTCATGA
1 TTTAATCTCGATCA-TT-TTCATTTTCTGACTCATGA
* * *
5151412 TTTAATCT-TAGTCGTTGTCA-TTTCTTGACTCATGA
1 TTTAATCTCGA-TCATTTTCATTTTC-TGACTCATGA
* ** * * *
5151447 TTCAATC-CGATTGTTTTCA-ATTCTTAACTCGTGA
1 TTTAATCTCGATCATTTTCATTTTC-TGACTCATGA
* * * * * *
5151481 TTTAAACCCGAT-AGTATTCATTTTTTGACTCGTGG
1 TTTAATCTCGATCA-TTTTCATTTTCTGACTCATGA
* * *
5151516 TTTAATC-CTGGTCATTTT-ATTTTTTGACTCATGG
1 TTTAATCTC-GATCATTTTCATTTTCTGACTCATGA
* * * ** *
5151550 TTTCATCTCGATCGTTTTCATTTTCTAACTCGCGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
** * * ** *
5151585 TTTAATCTTTAACTTTTTTGTTTTCTAACTCAT-A
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * * * *
5151619 GTTTAATAC-AGGTCATTTTTATTTTTTGACTCGT-A
1 -TTTAAT-CTCGATCATTTTCATTTTCTGACTCATGA
* * * *
5151654 GTTTAATCTCGATCATTTTCATTTTTTAACCCATAA
1 -TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* ** *
5151690 TTTAATTTCGATCATTTTTCATTCACTGACAT-GTGA
1 TTTAATCTCGATCA-TTTTCATTTTCTGAC-TCATGA
* * * ** *
5151726 TTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGA
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * *
5151761 TTTATTCTC-AGT-AGTTTTCATTTTTTGACAT-GTGA
1 TTTAATCTCGA-TCA-TTTTCATTTTCTGAC-TCATGA
* *
5151796 TTTAATATTGATCATTTTCATTTCTCTGACTCATGA
1 TTTAATCTCGATCATTTTCATTT-TCTGACTCATGA
** * ** **
5151832 TTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGA
1 TTTAATCTC-GATCATTTTCATTTTCTGACTCATGA
* * * *
5151868 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * *
5151903 TTTAATC-CTGATCATTTTCATTTTTTGACTCGTGG
1 TTTAATCTC-GATCATTTTCATTTTCTGACTCATGA
* ** **
5151938 TTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGA
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * * *
5151973 TTTAATCCCGGTCATTTTCATTTTTCTTATTCATGA
1 TTTAATCTCGATCATTTTCA-TTTTCTGACTCATGA
** *
5152009 TTTAATCCTCG-TTGTTTTCATTTTCTCACTCATGA
1 TTTAAT-CTCGATCATTTTCATTTTCTGACTCATGA
* * * *
5152044 TTTAAT-TTGGT--TGTTTCATTATCTAAGACACA-G-
1 TTTAATCTCGATCAT-TTTCATTTTCT--GACTCATGA
* * * *
5152077 TCTAATC-CCATTCATTTTCATTTTTTGACTCGTGA
1 TTTAATCTCGA-TCATTTTCATTTTCTGACTCATGA
** * *
5152112 TTTTTTCTC-AGTCAATTTCATTTTCTAACTCAT-A
1 TTTAATCTCGA-TCATTTTCATTTTCTGACTCATGA
* * *
5152146 GTTTAATCTCGATCATTTTCATTTTCTGGCCCATGG
1 -TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* ** *
5152182 TTTAATC-CTGATCATTTTTTC-TTTTTTGACTGGTGG
1 TTTAATCTC-GATCA--TTTTCATTTTCTGACTCATGA
* ** ** *
5152218 TTTAATC-CTGGTTGTTTTCAATTTT-TGACTTGTGG
1 TTTAATCTC-GATCATTTTC-ATTTTCTGACTCATGA
* * * *
5152253 TTTAATCTGGCTCATTTTCATTTTCTAACTCATGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* ** * * *
5152288 CTTAATCAGGATTATTTTCATTTTTTGACTCATGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * * *
5152323 TTTAATCATAG-TCATTTTCATTTTTTGACTCGTGG
1 TTTAATC-TCGATCATTTTCATTTTCTGACTCATGA
** * * * *
5152358 TCCAATCAT-GGTCGTTTTTCATTTT-TGACTCGTGG
1 TTTAATC-TCGATC-ATTTTCATTTTCTGACTCATGA
* * * **
5152393 TTTAATCCCTATCATTTTC-TTTTTTGA-T-GGGTA
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATG-A
* * * *
5152426 GTTTAATCCCGATCGTTTTCATTTTCTGACTTATGG
1 -TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * ** * * *
5152462 TTTAATCTGGGTTGTTTTTATTTTTTGACTCATGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * * * * *
5152497 TTTAATCCCCATCGTTTTCATTTTTTGACTCACGG
1 TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
* * **
5152532 TTTAATCGCG-TCATTTTCATTTTTTTTGACTTGTGA
1 TTTAATCTCGATCATTTTCA--TTTTCTGACTCATGA
* * * * * *
5152568 TTTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGT
1 TTTAATCTCGATCATT-TTCATTTTCTGACTCATGA
* * * * *
5152604 TTTAATCACTATCGTTTTCA-TTTCTTAACTCGTGA
1 TTTAATCTCGATCATTTTCATTTTC-TGACTCATGA
* *** * *
5152639 TTTGAACCT-GATCGCATTAATTTTCTGACTCATGG
1 TTT-AATCTCGATCATTTTCATTTTCTGACTCATGA
* *
5152674 TTTAATCCCAATCATTTTTCATTTTC
1 TTTAATCTCGATCA-TTTTCATTTTC
5152700 ATTTTTTGAT
Statistics
Matches: 1028, Mismatches: 253, Indels: 153
0.72 0.18 0.11
Matches are distributed among these distances:
32 3 0.00
33 27 0.03
34 138 0.13
35 630 0.61
36 196 0.19
37 30 0.03
38 4 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (35 bp):
TTTAATCTCGATCATTTTCATTTTCTGACTCATGA
Found at i:5152449 original size:104 final size:104
Alignment explanation
Indices: 5151497--5152626 Score: 447
Period size: 106 Copynumber: 10.7 Consensus size: 104
5151487 CCCGATAGTA
* * * * * *
5151497 TTCATTTTTTGACTCGTGGTTTAATCCTGGTC-ATTTT-ATTTTTTGACTCATGGTTTCATCTCG
1 TTCATTTTTTGACTTGTGGTTTAAT-CTGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
* * * ** *
5151560 ATCGTTTTCATTTTCTAACTCGCGGTTTAAT-CTTTAACTT
65 ATCGTTTTCATTTTTTGACTCACGGTTTAATCCCGTCA-TT
* * ** * * * * *
5151600 TT-TTGTTTTCTAACTCATAGTTTAATACAGGTCATTTTT-ATTTTTTGACTCGTAGTTTAATCT
1 TTCAT-TTTT-TGACTTGTGGTTTAAT-CTGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *** **
5151663 CGATCATTTTCATTTTTTAACCCATAATTTAATTTCGATCATTT
63 CTATCGTTTTCATTTTTTGACTCACGGTTTAATCCCG-TCA-TT
*** * * * * * * * * * * *
5151707 TTCATTCACTGACATGTGATTTAGTTTCGGT-GGTTTTGATTTTCTGACTCATGATTTATTCTC-
1 TTCATTTTTTGACTTGTGGTTTAATCT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
* * ***
5151770 AGTAGTTTTCATTTTTTGA--CATGTGATTTAATATTGATCATT
65 A-TCGTTTTCATTTTTTGACTCACG-G-TTTAATCCCG-TCATT
* ** * * * * * *
5151812 TTCATTTCTCTGACTCATGATTTAATGAC-GGTTGTTTTTCATTTTCTGACTTGTGATTTAATCT
1 TTCATTT-TTTGACTTGTGGTTTAAT--CTGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5151876 CGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCATT
63 CTATCGTTTTCATTTTTTGACTCACGGTTTAATCCCG-TCATT
* * * * * * *
5151919 TTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTT-GTTTTCTGACTCATGATTTAATCCCG
1 TTCATTTTTTGACTTGTGGTTTAATCT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
* * * * * * **
5151983 GTCATTTTCATTTTTCTTATTCATGATTTAATCCTCGTTGTT
65 ATCGTTTTCATTTTT-TGACTCACGGTTTAATCC-CGTCATT
* * ** * * * ** * * *
5152025 TTCATTTTCTCACTCATGATTTAATTTGGT--TGTTTCATTATCTAAGACAC--AGTCTAATCCC
1 TTCATTTTTTGACTTGTGGTTTAATCTGGTCGTTTTTCATT-T-TTTGACTCGTGGTTTAATCCC
* ** * ** * *
5152086 -ATTCATTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCAAT
64 TA-TCGTTTTCATTTTTTGACTCACGGTTTAATC-CCGTCATT
* * ** * * * * * * *
5152128 TTCATTTTCTAACTCATAGTTTAATCTCGATC-ATTTTCATTTTCTGGCCCATGGTTTAAT-CCT
1 TTCATTTTTTGACTTGTGGTTTAATCT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
* *** * **
5152191 GATCATTTTTTC-TTTTTTGACTGGTGGTTTAATCCTGGTTGTT
65 -ATC--GTTTTCATTTTTTGACTCACGGTTTAATCC-CGTCATT
* * * * * * ***
5152234 TTCAATTTTTGACTTGTGGTTTAATCTGGCTC-ATTTTCATTTTCTAACTCATGGCTTAATCAGG
1 TTCATTTTTTGACTTGTGGTTTAATCTGG-TCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
** * **
5152298 ATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATT
65 ATCGTTTTCATTTTTTGACTCACGGTTTAATC-CCGTCATT
* **
5152339 TTCATTTTTTGACTCGTGGTCCAATCATGGTCGTTTTTCA-TTTTTGACTCGTGGTTTAATCCCT
1 TTCATTTTTTGACTTGTGGTTTAATC-TGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
* ** *
5152403 ATCATTTTC-TTTTTTGA-T-GGGTAGTTTAATCCCGATCGTT
65 ATCGTTTTCATTTTTTGACTCACG--GTTTAATCCCG-TCATT
* * * * *
5152443 TTCATTTTCTGACTTATGGTTTAATCTGGGTTGTTTTT-ATTTTTTGACTCATGGTTTAATCCCC
1 TTCATTTTTTGACTTGTGGTTTAATCT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT
*
5152507 ATCGTTTTCATTTTTTGACTCACGGTTTAATCGCGTCATT
65 ATCGTTTTCATTTTTTGACTCACGGTTTAATCCCGTCATT
* * * *
5152547 TTCATTTTTTTTGACTTGTGATTTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCA
1 TTCA--TTTTTTGACTTGTGGTTTAATC-TGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
5152612 CTATCGTTTTCATTT
63 CTATCGTTTTCATTT
5152627 CTTAACTCGT
Statistics
Matches: 785, Mismatches: 188, Indels: 104
0.73 0.17 0.10
Matches are distributed among these distances:
102 2 0.00
103 56 0.07
104 145 0.18
105 211 0.27
106 251 0.32
107 114 0.15
108 3 0.00
109 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.51
Consensus pattern (104 bp):
TTCATTTTTTGACTTGTGGTTTAATCTGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA
TCGTTTTCATTTTTTGACTCACGGTTTAATCCCGTCATT
Found at i:5152783 original size:35 final size:35
Alignment explanation
Indices: 5152744--5152845 Score: 98
Period size: 36 Copynumber: 2.9 Consensus size: 35
5152734 TTAATTCTAG
* *
5152744 TCATTTTCATTTTCTGACTCATGGTTTAGTC-CTGT
1 TCATTTTCATTTTCTGACTCATGGTTTAATCAC-GA
* ** *
5152779 TCATTTTTATTTTTCTGACTGGTGGTTCAATCACGA
1 TCATTTTCA-TTTTCTGACTCATGGTTTAATCACGA
* * *
5152815 TCATTTCCATTTTTTGACTCATTGTTTAATC
1 TCATTTTCATTTTCTGACTCATGGTTTAATC
5152846 TTAGTCGTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
35 25 0.48
36 26 0.50
37 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACTCATGGTTTAATCACGA
Found at i:5153130 original size:35 final size:35
Alignment explanation
Indices: 5153079--5153880 Score: 301
Period size: 35 Copynumber: 22.9 Consensus size: 35
5153069 TTCATTTTTC
* *
5153079 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
*
5153114 TATCGTTTTCATTTTTTGACT-AGTGATTTAATCCT
1 GATCGTTTTCATTTTTTGACTCA-TGATTTAATCCT
* * * * *
5153149 GGTCACTTGTT-A-TTTCTGACTCGTGATTTAATCTT
1 GATC-GTT-TTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5153184 AATTGTTGTCATTTCTTGTCTCATGATTTAATCCC
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5153219 GATTGTTTTCATTTCTTAACTCGTGATTTAAGCCC
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* ** * *
5153254 GAT-TTTATTCA-TTTTTGACTTGTGGTCTAATCCT
1 GATCGTT-TTCATTTTTTGACTCATGATTTAATCCT
* * * *
5153288 GGTCGTTTTCATTTTTTGACTAATGGTTTCAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5153322 CAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 GA-TCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5153358 GATCTTTTTTATTTTCTAACT--TGTAGTTTAATACG
1 GATCGTTTTCATTTTTTGACTCATG-A-TTTAATCCT
* * * *
5153393 GGTCATTTTCATTTTTTGACTCA-CAGTTTATTCCT
1 GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * * * *
5153428 GGTCATTTTCATTTTTTAACTTATGATTTAAT-TT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5153462 CGATCATTTTTCATTCTCTGACAT-GTGATTTAGT-TT
1 -GATC-GTTTTCATTTTTTGAC-TCATGATTTAATCCT
* * * * *
5153498 CGGTGGTTTTGATTTTTCGACTCATGATTTACT-CT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5153533 CAGTAGTTTTCATTTTTTGACAT-GTGATTTAAT-AT
1 GA-TCGTTTTCATTTTTTGAC-TCATGATTTAATCCT
* ** *** * *
5153568 CGATCATTTTTGTTTCTCCAACTCATGATTTAATGACG
1 -GATCGTTTTCATTT-TTTGACTCATGATTTAAT-CCT
* **
5153606 GCT-GTTTTTCA-TTTTTGACTTGTGATTTAAT-CT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* *
5153639 CGATCGTTTTCATTTTTTGACTCA-CAGTTTAATCTT
1 -GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * *
5153675 GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* ** * * **
5153709 CGATTGTTTTTGTTTTCTGACTCATTATTTAATTTT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* *
5153745 GGTCATTTTCATTTTTTGACT--TGTAGTTTAATTCC-
1 GATCGTTTTCATTTTTTGACTCATG-A-TTTAA-TCCT
**
5153780 -ATCGCTTTT-ATTTCCTGACTCATGATTTAATCCT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* * *
5153814 -AGTCATTTTCATTTTTTGATTCGTGATTTAATCCTT
1 GA-TCGTTTTCATTTTTTGACTCATGATTTAATCC-T
* *
5153850 G-TTGTTTTCATTTTCTGACTCGA-GATTTAAT
1 GATCGTTTTCATTTTTTGACTC-ATGATTTAAT
5153881 TTTGGTTGTT
Statistics
Matches: 560, Mismatches: 159, Indels: 96
0.69 0.20 0.12
Matches are distributed among these distances:
33 7 0.01
34 65 0.12
35 426 0.76
36 53 0.09
37 9 0.02
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (35 bp):
GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
Found at i:5153596 original size:71 final size:71
Alignment explanation
Indices: 5153517--5153648 Score: 169
Period size: 71 Copynumber: 1.9 Consensus size: 71
5153507 TGATTTTTCG
* *
5153517 ACTCATGATTTACTCTCAG-TAG-TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTG
1 ACTCATGATTTAATCACAGCT-GTTTTTCA-TTTTTGACATGTGATTTAATATCGATCATTTTTG
5153580 TTTCTCCA
64 TTTCTCCA
* * * * *
5153588 ACTCATGATTTAATGACGGCTGTTTTTCATTTTTGACTTGTGATTTAATCTCGATCGTTTT
1 ACTCATGATTTAATCACAGCTGTTTTTCATTTTTGACATGTGATTTAATATCGATCATTTT
5153649 CATTTTTTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
71 45 0.87
72 7 0.13
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (71 bp):
ACTCATGATTTAATCACAGCTGTTTTTCATTTTTGACATGTGATTTAATATCGATCATTTTTGTT
TCTCCA
Found at i:5153597 original size:106 final size:106
Alignment explanation
Indices: 5153433--5153659 Score: 244
Period size: 106 Copynumber: 2.1 Consensus size: 106
5153423 TTCCTGGTCA
* * * ** * * **
5153433 TTTTCATTTTTTAACTTATGATTTAATTTCGATCATTTTTCATTCTCTGACATGTGATTTAGTTT
1 TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACATATGATTTAATGA
* *
5153498 CGG-TGGTTTTGATTTTTCGACTCATGATTTACTCTC-AGTAG
66 CGGCTGGTTTTCATTTTT-GACTCATGATTTAATCTCGA-TAG
* **
5153539 TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTGTTTCTCCAAC-TCATGATTTAATG
1 TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACAT-ATGATTTAATG
* ** *
5153603 ACGGCTGTTTTTCATTTTTGACTTGTGATTTAATCTCGATCG
65 ACGGCTGGTTTTCATTTTTGACTCATGATTTAATCTCGATAG
5153645 TTTTCATTTTTTGAC
1 TTTTCATTTTTTGAC
5153660 TCACAGTTTA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
105 1 0.01
106 86 0.86
107 13 0.13
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.52
Consensus pattern (106 bp):
TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACATATGATTTAATGA
CGGCTGGTTTTCATTTTTGACTCATGATTTAATCTCGATAG
Found at i:5153826 original size:139 final size:139
Alignment explanation
Indices: 5153516--5153896 Score: 375
Period size: 139 Copynumber: 2.7 Consensus size: 139
5153506 TTGATTTTTC
* * **
5153516 GACTCATGATTTACTCTCAGT-AGTTTTCATTTTTTGACAT-GTGATTTAATATCGATCATTTTT
1 GACTCATGATTTAATCT-AGTCA-TTTTCATTTTTTGAC-TCGTGATTTAATCTCGATTGTTTTT
** *** ** *
5153579 GTTTCTCCAACTCATGATTTAATGACGGCTGTTTTTCA-TTTTTGACTTGTGATTTAATCTCGAT
63 GTTT-TCTGACTCATGATTTAATTTTGG-TCATTTTCATTTTTTGACTTGTGATTTAATCTCCAT
**
5153643 CGTTTTCATTTTTT
126 CGTTTTCATTTCCT
* * *
5153657 GACTCA-CAGTTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGATTGTTTTTG
1 GACTCATGA-TTTAATCTAG-TCATTTTCATTTTTTGACTCGTGATTTAATCTCGATTGTTTTTG
*
5153721 TTTTCTGACTCATTATTTAATTTTGGTCATTTTCATTTTTTGACTTGT-AGTTTAAT-TCCATCG
64 TTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACTTGTGA-TTTAATCTCCATCG
5153784 CTTTT-ATTTCCT
128 -TTTTCATTTCCT
* * **
5153796 GACTCATGATTTAATCCTAGTCATTTTCATTTTTTGATTCGTGATTTAATCCTTG-TTGTTTTCA
1 GACTCATGATTTAAT-CTAGTCATTTTCATTTTTTGACTCGTGATTTAAT-CTCGATTGTTTTTG
**
5153860 TTTTCTGACTCGA-GATTTAATTTTGGTTGTTTTCATT
64 TTTTCTGACTC-ATGATTTAATTTTGGTCATTTTCATT
5153897 ATCTAAGACA
Statistics
Matches: 201, Mismatches: 28, Indels: 24
0.79 0.11 0.09
Matches are distributed among these distances:
139 98 0.49
140 50 0.25
141 52 0.26
142 1 0.00
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.52
Consensus pattern (139 bp):
GACTCATGATTTAATCTAGTCATTTTCATTTTTTGACTCGTGATTTAATCTCGATTGTTTTTGTT
TTCTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACTTGTGATTTAATCTCCATCGTTT
TCATTTCCT
Found at i:5153893 original size:70 final size:70
Alignment explanation
Indices: 5153084--5153896 Score: 355
Period size: 70 Copynumber: 11.6 Consensus size: 70
5153074 TTTTCGATCA
* * * * *
5153084 TTTTCATTTTTTGACTCATGGTTTAATCCTT-ATCGTTTTCATTTTTTGACTAGTGATTTAATCC
1 TTTTCATTTTCTGACTCATGATTTAAT-CTTGGTCATTTTCATTTTTTGACTTGTGATTTAAT-C
*
5153148 TGGTCACTTG
64 TCG--A-TTG
* ** ** * * * ** *
5153158 --TT-A-TTTCTGACTCGTGATTTAATCTTAATTGTTGTCATTTCTTGTCTCATGATTTAATCCC
1 TTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAATCTC
5153219 GATTG
66 GATTG
* * * ** * * * *
5153224 TTTTCA-TTTCTTAACTCGTGATTTAAGCCCGAT-TTTATTCA-TTTTTGACTTGTGGTCTAATC
1 TTTTCATTTTC-TGACTCATGATTTAATCTTGGTCATT-TTCATTTTTTGACTTGTGATTTAATC
* *
5153286 -CTGGTCG
64 TC-GATTG
* * * * ** * * * *
5153293 TTTTCATTTTTTGACTAATGGTTTCATCTCAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 TTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAATCTC
5153358 GATCT-
66 GAT-TG
* * * *** *
5153363 TTTTTATTTTCTAACT--TGTAGTTTAATAC-GGGTCATTTTCATTTTTTGAC-TCACAGTTTAT
1 TTTTCATTTTCTGACTCATG-A-TTTAAT-CTTGGTCATTTTCATTTTTTGACTTGTGA-TTTAA
* **
5153424 TC-CTGGTCA
62 TCTC-GATTG
* * * * * * * * *
5153433 TTTTCATTTTTTAACTTATGATTTAAT-TTCGATCATTTTTCATTCTCTGACATGTGATTTAGTT
1 TTTTCATTTTCTGACTCATGATTTAATCTT-GGTCA-TTTTCATTTTTTGACTTGTGATTTAATC
* *
5153497 TCGGTGG
64 TCGATTG
* * ** * *
5153504 TTTTGATTTT-TCGACTCATGATTTACTCTCAGT-AGTTTTCATTTTTTGACATGTGATTTAATA
1 TTTTCATTTTCT-GACTCATGATTTAATCTTGGTCA-TTTTCATTTTTTGACTTGTGATTTAATC
**
5153567 TCGATCA
64 TCGATTG
** ** *** **
5153574 TTTTTGTTTCTCCAACTCATGATTTAATGACGGCTGTTTTTCA-TTTTTGACTTGTGATTTAATC
1 TTTTCATTT-TCTGACTCATGATTTAATCTTGG-TCATTTTCATTTTTTGACTTGTGATTTAATC
*
5153638 TCGATCG
64 TCGATTG
* * * * *
5153645 TTTTCATTTTTTGACTCA-CAGTTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT
1 TTTTCATTTTCTGACTCATGA-TTTAATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAATCT
5153709 CGATTG
65 CGATTG
** * *
5153715 TTTTTGTTTTCTGACTCATTATTTAATTTTGGTCATTTTCATTTTTTGACTTGT-AGTTTAAT-T
1 TTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTTGTGA-TTTAATCT
* *
5153778 CCATCG
65 CGATTG
* * *
5153784 CTTTT-ATTTCCTGACTCATGATTTAATCCTAGTCATTTTCATTTTTTGA-TTCGTGATTTAATC
1 -TTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTT-GTGATTTAAT-
*
5153847 CTTG-TTG
63 CTCGATTG
* **
5153854 TTTTCATTTTCTGACTCGA-GATTTAATTTTGGTTGTTTTCATT
1 TTTTCATTTTCTGACTC-ATGATTTAATCTTGGTCATTTTCATT
5153897 ATCTAAGACA
Statistics
Matches: 557, Mismatches: 140, Indels: 88
0.71 0.18 0.11
Matches are distributed among these distances:
66 3 0.01
67 1 0.00
68 7 0.01
69 117 0.21
70 317 0.57
71 97 0.17
72 15 0.03
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.52
Consensus pattern (70 bp):
TTTTCATTTTCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTGACTTGTGATTTAATCTC
GATTG
Found at i:5153991 original size:35 final size:35
Alignment explanation
Indices: 5153945--5154113 Score: 130
Period size: 35 Copynumber: 4.8 Consensus size: 35
5153935 TGACTTATGA
**
5153945 TTTTCATTTTCTGACTCGTGGTTTAATCTTAATCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCTCGATCG
* *
5153980 TTTTCATTTTCTGACTCAAT-GTTTAATCTCGATCCT
1 TTTTCATTTTCTGACTC-GTGGTTTAATCTCGAT-CG
* * * *
5154016 TTTTCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCA
1 TTTTCATTTTCTGA-CTCGTGGTTTAATCTCGATCG
* * *
5154051 TTTTTATTTT-TCAACTCGTGGTTTAATC-CTTATCG
1 TTTTCATTTTCT-GACTCGTGGTTTAATCTC-GATCG
* * * *
5154086 TTTTCATTTTTTTACTAGTGATTTAATC
1 TTTTCATTTTCTGACTCGTGGTTTAATC
5154114 CTAGTCACTT
Statistics
Matches: 107, Mismatches: 19, Indels: 16
0.75 0.13 0.11
Matches are distributed among these distances:
34 2 0.02
35 76 0.71
36 29 0.27
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCTCGATCG
Found at i:5154171 original size:35 final size:35
Alignment explanation
Indices: 5154127--5154202 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
5154117 GTCACTTTTT
*
5154127 ATTTC-TGACTTATAATTTAATCTCAG-TTGTTGTC
1 ATTTCTTGACTCATAATTTAATC-CAGATTGTTGTC
* * *
5154161 ATTTCTTGACTCATGATTTAATCCCGATTGTTTTC
1 ATTTCTTGACTCATAATTTAATCCAGATTGTTGTC
5154196 ATTTCTT
1 ATTTCTT
5154203 AAACCGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 7 0.19
35 29 0.81
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (35 bp):
ATTTCTTGACTCATAATTTAATCCAGATTGTTGTC
Found at i:5154415 original size:35 final size:35
Alignment explanation
Indices: 5154341--5154609 Score: 154
Period size: 36 Copynumber: 7.6 Consensus size: 35
5154331 TAAATACGAG
* * *
5154341 TCATTTTCATTTTTTGACTCAT-AGTTTAA-TCCCA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATTTCGA
*
5154375 GTCATTTTCATTTTTTAACTCGTGATTTAATTTCGA
1 -TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
* * **
5154411 TCATTTTTCATTCTCTGACGT-GTGATTTAGCTTC-A
1 TCA-TTTTCATTTTTTGAC-TCGTGATTTAATTTCGA
** * * * *
5154446 GTGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAA
1 -TCATTTTCATTTTTTGACTCGTGATTTAATT-TCGA
** *
5154482 TTGTTTTCATTTTTTTGACAT-GTGATTTAATATCGA
1 TCATTTTCA-TTTTTTGAC-TCGTGATTTAATTTCGA
* * * ** *
5154518 TCATTTTCGTTTCTTTGACTCATAATTTAATGACGGT
1 TCATTTTCATTT-TTTGACTCGTGATTTAATTTC-GA
** * *
5154555 TGTTTTTCATTTTTTGACTTGTGATTTAATCTCGA
1 TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
*
5154590 TCGTTTTCATTTTTTGACTC
1 TCATTTTCATTTTTTGACTC
5154610 ACGGTTTAAT
Statistics
Matches: 178, Mismatches: 42, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
34 2 0.01
35 79 0.44
36 83 0.47
37 14 0.08
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
Found at i:5154546 original size:72 final size:71
Alignment explanation
Indices: 5154450--5154610 Score: 189
Period size: 72 Copynumber: 2.3 Consensus size: 71
5154440 GCTTCAGTGG
* * * * *
5154450 TTTTGATTTTCTGACTCATGATTTATTCTCAATTG-TTTTCATTTTTTTGACATGTGATTTAATA
1 TTTTCATTTTTTGACTCATAATTTAATCACAATTGTTTTTCA-TTTTTTGACATGTGATTTAATA
5154514 TCGATCA
65 TCGATCA
* * ** * *
5154521 TTTTCGTTTCTTTGACTCATAATTTAATGACGGTTGTTTTTCATTTTTTGACTTGTGATTTAATC
1 TTTTCATTT-TTTGACTCATAATTTAATCACAATTGTTTTTCATTTTTTGACATGTGATTTAATA
*
5154586 TCGATCG
65 TCGATCA
5154593 TTTTCATTTTTTGACTCA
1 TTTTCATTTTTTGACTCA
5154611 CGGTTTAATC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
71 16 0.21
72 53 0.71
73 6 0.08
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.54
Consensus pattern (71 bp):
TTTTCATTTTTTGACTCATAATTTAATCACAATTGTTTTTCATTTTTTGACATGTGATTTAATAT
CGATCA
Found at i:5154618 original size:35 final size:35
Alignment explanation
Indices: 5154237--5154829 Score: 180
Period size: 35 Copynumber: 16.9 Consensus size: 35
5154227 CTAATCCTAG
* * * *
5154237 TCGTTTTCATTTTTTGACCCAAGGTTTCATCTCGA
1 TCGTTTTCATTTTTTGACTCATGATTTAATCTCGA
* *** *
5154272 TCGTTTTTATTTTTTGACTTGCGATTTAATCTCGG
1 TCGTTTTCATTTTTTGACTCATGATTTAATCTCGA
** * * * *
5154307 TC-TTTTTGTTTTCT-AATGCAT-AGTTAAAT-ACGA
1 TCGTTTTCATTTTTTGACT-CATGA-TTTAATCTCGA
* *
5154340 GTCATTTTCATTTTTTGACTCAT-AGTTTAATC-CCA
1 -TCGTTTTCATTTTTTGACTCATGA-TTTAATCTCGA
* * * *
5154375 GTCATTTTCATTTTTTAACTCGTGATTTAATTTCGA
1 -TCGTTTTCATTTTTTGACTCATGATTTAATCTCGA
* * * * *
5154411 TCATTTTTCATTCTCTGACGT-GTGATTT-AGCTTC-A
1 TC-GTTTTCATTTTTTGAC-TCATGATTTAATC-TCGA
* * * * *
5154446 GTGGTTTTGATTTTCTGACTCATGATTTATTCTCAA
1 -TCGTTTTCATTTTTTGACTCATGATTTAATCTCGA
* * *
5154482 TTGTTTTCATTTTTTTGACAT-GTGATTTAATATCGA
1 TCGTTTTCA-TTTTTTGAC-TCATGATTTAATCTCGA
* * * ** *
5154518 TCATTTTCGTTTCTTTGACTCATAATTTAATGACGG
1 TCGTTTTCATTT-TTTGACTCATGATTTAATCTCGA
* **
5154554 TTGTTTTTCATTTTTTGACTTGTGATTTAATCTCGA
1 TCG-TTTTCATTTTTTGACTCATGATTTAATCTCGA
* *
5154590 TCGTTTTCATTTTTTGACTCACGGTTTAATC-CTGA
1 TCGTTTTCATTTTTTGACTCATGATTTAATCTC-GA
* ** *
5154625 TCAG-TTT-AATTTTTGACTTGTGGTTTAATCTCGA
1 TC-GTTTTCATTTTTTGACTCATGATTTAATCTCGA
* * * * * * * * *
5154659 TTGCCTTT-GTTTTCTAACTTATGATTTAATTTTGG
1 TCG-TTTTCATTTTTTGACTCATGATTTAATCTCGA
* * * * *
5154694 TCTTTTTAATTTTTTGACTTACGATTTAAT-TCCTA
1 TCGTTTTCATTTTTTGACTCATGATTTAATCT-CGA
* *** *
5154729 CCGCTTTT-ATTCCCTGACTCATGATTTAATC-CTA
1 TCG-TTTTCATTTTTTGACTCATGATTTAATCTCGA
* * *
5154763 GTCAG-TTTCATTTTTCTGATTCGTGATTTAATC-CTTA
1 -TC-GTTTTCATTTTT-TGACTCATGATTTAATCTC-GA
* * * *
5154800 TTGTTTTCATTTTCTGACTCGTGCTTTAAT
1 TCGTTTTCATTTTTTGACTCATGATTTAAT
5154830 TTTGGTTGTT
Statistics
Matches: 413, Mismatches: 110, Indels: 70
0.70 0.19 0.12
Matches are distributed among these distances:
33 6 0.01
34 51 0.12
35 222 0.54
36 122 0.30
37 12 0.03
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (35 bp):
TCGTTTTCATTTTTTGACTCATGATTTAATCTCGA
Found at i:5154845 original size:35 final size:35
Alignment explanation
Indices: 5154742--5154829 Score: 99
Period size: 36 Copynumber: 2.5 Consensus size: 35
5154732 CTTTTATTCC
* *
5154742 CTGACTCATGATTTAATCC-TAGTCAG-TTTCATTTTT
1 CTGACTCGTGATTTAATCCTTA-T-TGTTTTCA-TTTT
*
5154778 CTGATTCGTGATTTAATCCTTATTGTTTTCATTTT
1 CTGACTCGTGATTTAATCCTTATTGTTTTCATTTT
*
5154813 CTGACTCGTGCTTTAAT
1 CTGACTCGTGATTTAAT
5154830 TTTGGTTGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
35 20 0.44
36 23 0.51
37 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (35 bp):
CTGACTCGTGATTTAATCCTTATTGTTTTCATTTT
Found at i:5154967 original size:35 final size:35
Alignment explanation
Indices: 5154893--5154967 Score: 80
Period size: 35 Copynumber: 2.1 Consensus size: 35
5154883 CTGACTTATG
* ** **
5154893 ATTTTCATTTTTCGACTCGTGGTTTTTTTTCATTC
1 ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
*
5154928 ATTTTCATTTTTTGACTCATGGTTTAATCCCAATT-
1 ATTTTCATTTTTCGACTCATGGTTTAATCCC-ATTC
5154963 ATTTT
1 ATTTT
5154968 TCTTTTCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
35 30 0.91
36 3 0.09
ACGTcount: A:0.17, C:0.16, G:0.09, T:0.57
Consensus pattern (35 bp):
ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
Found at i:5155119 original size:35 final size:34
Alignment explanation
Indices: 5155022--5155284 Score: 108
Period size: 35 Copynumber: 7.6 Consensus size: 34
5155012 ATTCCAATCA
* ***
5155022 TTTTCA-TTTTTGACTCATGGTTTAGTCATATTC
1 TTTTCATTTTTTGACTCATGGTTTAATCACGGTC
* * ** *
5155055 ATTTTTATTTTTCTAACTGGTGGCTTAATCACGGTC
1 -TTTTCATTTTT-TGACTCATGGTTTAATCACGGTC
***
5155091 TTTTCCATTTTTTGACTCATGGTTTAATCTTAGTC
1 TTTT-CATTTTTTGACTCATGGTTTAATCACGGTC
* * * *
5155126 GTTTCCATTTTTTGGCTCGTGCTTTAATCTA-GGTC
1 -TTTTCATTTTTTGACTCATGGTTTAATC-ACGGTC
* * *
5155161 ATTT--TTTTTTGACTCAAT-GTTTAATCCCAC-TTG
1 TTTTCATTTTTTGACTC-ATGGTTTAAT--CACGGTC
* * *
5155194 TTTTCATTTTCTGACTCGTGGTTTAATCCATGTTGT-
1 TTTTCATTTTTTGACTCATGGTTTAAT-CACG--GTC
* * ** * *
5155230 TTTTCATTTTTTAACTCGTACTTTAATCGCTGTC
1 TTTTCATTTTTTGACTCATGGTTTAATCACGGTC
*
5155264 ATTTTCATTTCTTGACTCATG
1 -TTTTCATTTTTTGACTCATG
5155285 ATTCAAGCTG
Statistics
Matches: 166, Mismatches: 46, Indels: 33
0.68 0.19 0.13
Matches are distributed among these distances:
32 16 0.10
33 8 0.05
34 12 0.07
35 82 0.49
36 47 0.28
37 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.13, T:0.52
Consensus pattern (34 bp):
TTTTCATTTTTTGACTCATGGTTTAATCACGGTC
Found at i:5155233 original size:67 final size:67
Alignment explanation
Indices: 5155098--5155223 Score: 155
Period size: 67 Copynumber: 1.9 Consensus size: 67
5155088 GTCTTTTCCA
** * * * *
5155098 TTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTTTGGCTCGTGCTTTAATCTAGGTCAT
1 TTTTTTGACTCATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCAGGTCAT
5155163 TT
66 TT
* * *
5155165 TTTTTTGACTCAAT-GTTTAATCCCACTTGTTTTCATTTTCTGACTCGTGGTTTAATCCA
1 TTTTTTGACTC-ATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCA
5155224 TGTTGTTTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 47 0.96
68 2 0.04
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (67 bp):
TTTTTTGACTCATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCAGGTCAT
TT
Done.