Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 31 of 109
Found at i:5155267 original size:103 final size:105
Alignment explanation
Indices: 5155091--5155282 Score: 230
Period size: 103 Copynumber: 1.8 Consensus size: 105
5155081 AATCACGGTC
* * ** * *
5155091 TTTTCCATTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTTTGGCTCGTGCTTTAATCT
1 TTTTCCATTTTCTGACTCATGGTTTAATCATAGTCGTTTCCATTTTTTAACTCGTACTTTAATCG
5155156 AGGTCATTTT-TTT-TTGACTCAATGTTTAATCCCACTTG
66 AGGTCATTTTATTTCTTGACTCAATGTTTAATCCCACTTG
* * *
5155194 TTTT-CATTTTCTGACTCGTGGTTTAATCCAT-GTTGTTTTTCATTTTTTAACTCGTACTTTAAT
1 TTTTCCATTTTCTGACTCATGGTTTAAT-CATAGTCG-TTTCCATTTTTTAACTCGTACTTTAAT
**
5155257 CGCTGTCATTTTCATTTCTTGACTCA
64 CGAGGTCATTTT-ATTTCTTGACTCA
5155283 TGATTCAAGC
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
102 24 0.33
103 38 0.52
105 3 0.04
106 8 0.11
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (105 bp):
TTTTCCATTTTCTGACTCATGGTTTAATCATAGTCGTTTCCATTTTTTAACTCGTACTTTAATCG
AGGTCATTTTATTTCTTGACTCAATGTTTAATCCCACTTG
Found at i:5155399 original size:35 final size:35
Alignment explanation
Indices: 5155348--5156841 Score: 639
Period size: 35 Copynumber: 42.5 Consensus size: 35
5155338 TTTTCATTTT
5155348 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * ***
5155383 TCAATCGTTTTAATTTTCTGACTCAAAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5155418 TCGGTC-TTTTCCTTTTTCT-AGCTAGTGGTTTAATC
1 TCGATCGTTTTCATTTTT-TGA-CTCGTGGTTTAATC
* *
5155453 TCGATCATTTTCATTTTTTGACTCGTAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * *
5155488 TTTATCGTTTTCATTTTTTGACTAGTGATTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5155523 TTGGTCACTTCTT-A-TTTCTGACTCATGATTTAATC
1 TCGATC-GTT-TTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5155558 T-TAGTCGTTGTCATTTCTTGACTCATGATTCAATC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5155593 CCGATTGTTTTCAATTCTTAACTCGTGATTTAAAC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5155628 CCGATAGTATTCATTTTTTGACTCGTGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5155663 -CTGGTC-ATTT-ATTTTTTGACTCATGGTTTCATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5155696 TCGATCGTTTTCA-TTTCTAACTCGCGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * * ** * * * *
5155730 TTTAACTTTTTTGTTTTCTAACTCATAGTTTAATAC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-C
* * * * *
5155766 -AGGTCATTTTTATTTTTTGACTCGTAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * ** *
5155800 TCGATCATTTTCATTTTTTAACCCATAATTTAATT
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* *** * * *
5155835 TCGATCATTTTTCATTCACTGACAT-GTGATTTAGTT
1 TCGATC-GTTTTCATTTTTTGAC-TCGTGGTTTAATC
* * * * * * *
5155871 TCGGTGGTTTTGATTTTCTGACTCATGATTTATTC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5155906 TC-AGTAGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TCGA-TCGTTTTCATTTTTTGAC-TCGTGGTTTAATC
* * * * * *
5155941 TTGATCATTTTCATTTCTCTGACTCATGATTTAATG
1 TCGATCGTTTTCATTT-TTTGACTCGTGGTTTAATC
* * * * * *
5155977 ACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TCGATCG-TTTTCATTTTTTGACTCGTGGTTTAATC
**
5156013 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
*
5156048 -CTGATCATTTTCATTTTTTGACTCGTGGTTTAATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * ** * * *
5156083 TCGGTTGTTTTTGTTTTCTGACTCATGATTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5156118 CCGGTCATTTTCATTTTTCTTATTCATGATTTAATCC
1 TCGATCGTTTTCATTTTT-TGACTCGTGGTTTAAT-C
* * * * * *
5156155 TCG-TTGTTTTCATTTTCTCACTCATGATTTAATT
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * ** * * *
5156189 TTGGTTG-TTTCATTATCTAAGACAC--AGTCTAATC
1 TCGATCGTTTTCATT-T-TTTGACTCGTGGTTTAATC
* * * **
5156223 -CCATTCATTTTCATTTTTTGACTCGTGATTTTTTC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * * * *
5156258 TC-AGTCAATTTCATTTTCTAACTCATAGTTTAATC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5156293 TCGATCATTTTCATTTTCTGGCCCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5156328 -CTGATCATTTTTTCTTTTTTTGACTGGTGGTTTAATC
1 TC-GATC--GTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5156365 -CTGGTTGTTTTCAATTTTTGACTTGTGGTTTAATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5156400 TGGCTCATTTTCATTTTCTAACTCATGGCTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** ** *
5156435 AGGATTATTTTCATTTTTTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * **
5156470 ATAG-TCATTTTCATTTTTTGACTCGTGGTCCAATC
1 -TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
*
5156505 AT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATC
1 -TCGATCG-TTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5156541 CCTATCATTTTTCTTTTTTTGA-TGGGTAGTTTAATC
1 TCGATC-GTTTTCATTTTTTGACT-CGTGGTTTAATC
* * **
5156577 CCGATCGTTTTCATTTTCTGACTTATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5156612 TGGGTTGTTTTTATTTTTTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * **
5156647 CCCATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5156682 GCG-TCATTTTCATTTTTTTTGACTTGTGATTTAATC
1 TCGATCGTTTTCA--TTTTTTGACTCGTGGTTTAATC
* * *
5156718 TTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TCGATCGTT-TTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5156754 ACTATCGTTTTCATTTCTTAACTCGTGATTTGAACC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTT-AATC
** * * *
5156790 T-GATCGCATTAATTTTCTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5156824 CCAATCATTTTTCATTTT
1 TCGATC-GTTTTCATTTT
5156842 CATTTTTTGA
Statistics
Matches: 1097, Mismatches: 305, Indels: 113
0.72 0.20 0.07
Matches are distributed among these distances:
33 30 0.03
34 74 0.07
35 724 0.66
36 221 0.20
37 44 0.04
38 4 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (35 bp):
TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
Found at i:5156116 original size:177 final size:175
Alignment explanation
Indices: 5155878--5161702 Score: 662
Period size: 177 Copynumber: 33.7 Consensus size: 175
5155868 GTTTCGGTGG
* * * * * * * * *
5155878 TTTTGATTTTCTGACTCATGATTTATTCTCAG-TAGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTA-TTTTCATTTTCTGAC-TCATGATTTAATC
* * * *
5155941 TTGATCATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGA
64 TCGATCATTTTCATTT-TCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTGA
* *
5156006 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
127 TTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* ** *
5156055 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * * *
5156120 GGTCATTTTCATTTTTCTTATTCATGATTTAATCCTCGTTG-TTTTCATTTTCTCACTCATGATT
66 GATCATTTTCA-TTTTCTGACTCATGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGTGATT
* * * * * * ** * * * *
5156184 TAATTTTGGTTG-TTTCATTATCTAAGACACAGTCTAATCC-CATTCA
129 TAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGA-TCA
* ** * * * *
5156230 TTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCAATTTCATTTTCTAACTCAT-AGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGA-TTTAATCT
* * * * * * *
5156294 CGATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCAT-TTTTTCTTTTTTTGACTGGTGG
65 CGATCATTTTCATTTTCTGACTCATGGTTTAATAC-GGT--TGTTTTTCATTTTTTGACTCGTGA
* * * * *
5156358 TTTAATC-CTGGTTGTTTTCAATTTTTGACTTGTGGTTTAAT-CTGGCTCA
127 TTTAATCTC-GGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCT-GATCA
* * * * * * *
5156407 TTTTCATTTTCTAACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGG-TTATTTTCATTTTCTGACTCATGATTTAATC-
* * * ** * * *
5156471 TAG-TCATTTTCATTTTTTGACTCGTGGTCCAATCATGGTCGTTTTTCATTTTTTGACTCGTGGT
64 TCGATCATTTTCATTTTCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTGAT
* ** * * * * *
5156535 TTAATCCCTATCATTTTTCTTTTTTTGA-T-GGGTAGTTTAATCCCGATCG
128 TTAATCTCGGTC-GTTTTCATTTTTTGACTCGCG--GTTTAATCCTGATCA
* ** * * * * * *
5156584 TTTTCATTTTCTGACTTATGGTTTAATCTGGGTTGTTTTTATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * ** *
5156649 CATCGTTTTCATTTTTTGACTCACGGTTTAAT-CGCG-TCATTTTCATTTTTTTTGACTTGTGAT
66 GATCATTTTCATTTTCTGACTCATGGTTTAATACG-GTTGTTTTTCA--TTTTTTGACTCGTGAT
* * * *
5156712 TTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCACT-ATCG
128 TTAATCTCGGTCGTT-TTCATTTTTTGACTCGCGGTTTAATC-CTGATCA
* * * * * **** * * *
5156761 TTTTCATTTCTTAACTCGTGATTTGAACCT-GATCGCATTAATTTTCTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTT-AATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCT
* * * * * *
5156825 CAATCATTTTTCATTTTC--A-T--T--TTT--T--GATCG-TTTTCATTTTCTAACTCGT-AGC
65 CGATCA-TTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGA-T
* * * ** * *
5156877 TTAAT-TCTAGTCATTTTCATTTTCTGACTCATGGTTTAGTCCTGTTCA
128 TTAATCTC-GGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * * * * * *
5156925 TTTTTATTTTTCTGACTGGTGGTTCAATCACGATCATTTCCATTTTTTGACTCATTG-TTTAATC
1 TTTTCATTTTT-TGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCA-TGATTTAATC
* * * * * ** * * *
5156989 T-TAGTCGTTTCCATTTTTTGGCTTGTGCTTTAAT-C--TATGTCATTTT-TTTTTTTGACTCAA
64 TCGA-TCATTTTCATTTTCTGACTCATGGTTTAATACGGT-TGT--TTTTCATTTTTTGACTC-G
* * * * ** * * ** * **
5157049 CG-CTCAATCACACTTGTTTTCATTTTCTGACTCATGGTTTAATCCATGTTGT
124 TGATTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCC-TGATCA
* ** * * * * *
5157101 TTTTCATTTTTTAACTCGTACTTTAATCGCAGTTATTTTCA-TTTCTTAACTCATGATTCAAACT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTC-TGACTCATGATTTAATCT
* * * * * * * * *
5157165 -GGTCATATTCATTTTCTAACTCGTGGTTTAGT-C--CTG---ATCATTTTTT---T-TTCATTT
65 CGATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGATTT
* * ** * *
5157219 --T-TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTTATCG
130 AATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * *
5157262 TTTTCATTTTTTGACTAGTGATTTAATC-CTGGTCACTTGTT-A-TTTCTGACTCGTGATTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTTA-TT-TTCATTTTCTGACTCATGATTTAAT
** ** * * * * * * *
5157324 CTTAATTGTTGTCA-TTTCTTGTCTCATGATTTAATCCCGATTG-TTTTCATTTCTTAACTCGTG
63 CTCGATCATTTTCATTTTC-TGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTG
* * * * * * * * *
5157387 ATTTAAGCCCGAT-TTTATTCA-TTTTTGACTTGTGGTCTAATCCTGGTCG
126 ATTTAATCTCGGTCGTT-TTCATTTTTTGACTCGCGGTTTAATCCTGATCA
** * * ** * * * *
5157436 TTTTCATTTTTTGACTAATGGTTTCATCTCAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * ** * * ** **
5157501 GATCTTTTTTATTTTCTAACTTGTAGTTTAATACGGGTCATTTTCATTTTTTGACTC-ACAGTTT
66 GATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGA-TTT
* * * *** * *
5157565 ATTC-CTGGTCATTTTCATTTTTTAACTTATGATTTAAT-TTCGATCA
130 AATCTC-GGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCT-GATCA
* * * * * ** * *
5157611 TTTTTCATTCTCTGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTT-TCGACTCATGATTTACT
1 -TTTTCATTTTTTGAC-TCGTGGTTTAATCTCGGTTATTTTCATTTTCT-GACTCATGATTTAAT
* * ** * ***
5157674 CTC-AGT-AGTTTTCATTTTTTGA--CATGTGATTTAATATCGATCATTTTT-GTTTCTCCAACT
63 CTCGA-TCA-TTTTCATTTTCTGACTCATG-G-TTTAATA-CGGTTGTTTTTCATTT-TTTGACT
* ** * * * *
5157734 CATGATTTAATGACGG-CTGTTTTTCATTTTTTGACTTGTGATTTAAT-CTCGATCG
122 CGTGATTTAATCTCGGTC-G-TTTTCATTTTTTGACTCGCGGTTTAATCCT-GATCA
*** * * * * * *
5157789 TTTTCATTTTTTGACTCACAGTTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
** ** ** ** ** *
5157854 GATTGTTTTTGTTTTCTGACTCATTATTTAATTTTGG-TCATTTTCATTTTTTGACTTGT-AGTT
66 GATCATTTTCATTTTCTGACTCATGGTTTAA-TACGGTTGTTTTTCATTTTTTGACTCGTGA-TT
** ** ** *
5157917 TAAT-TCCATCGCTTTT-ATTTCCTGACTCATGATTTAATCCT-AGTCA
129 TAATCTCGGTCG-TTTTCATTTTTTGACTCGCGGTTTAATCCTGA-TCA
* * * *
5157963 TTTTCATTTTTTTGATTCGTGATTTAATC-CTTGTTGTTTTCATTTTCTGACTCGA-GATTTAAT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCTC-GGTTATTTTCATTTTCTGACTC-ATGATTTAAT
* * * ** * * ** * * ** **
5158026 TTTGGTTGTTTTCATTATCTAAGACACGGTCTAAT-CCCTCTCATTTTCATTTTTTGA--C----
63 CTCGATCATTTTCATTTTCTGACTCATGGTTTAATACGGT-TGTTTTTCATTTTTTGACTCGTGA
* * * * * *
5158084 -TT-A--T--G--ATTTTCATTTTCTGACTCGTGGTTTAATCTTAATCG
127 TTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * * *
5158125 TTTTCATTTTCTGACTCAAT-GTTTAATCTCGATCCT-TTTTCTTTTTCT-AGCT-AGTGGTTTA
1 TTTTCATTTTTTGACTC-GTGGTTTAATCTCGGT--TATTTTCATTTTCTGA-CTCA-TGATTTA
* * * * * * * *
5158186 ATCTCGGTCATTTTTATTTT-TCAACTCGTGGTTTAAT-C-CTTATCGTTTTCATTTTTTTACTA
61 ATCTCGATCATTTTCATTTTCT-GACTCATGGTTTAATACGGTTGT--TTTTCATTTTTTGACTC
* * * * ***** * **
5158248 GTGATTTAATC-CTAGTCACTTTTTA-TTTCTGACTTATAATTTAAT-CTCAGTTG
123 GTGATTTAATCTC-GGTC-GTTTTCATTTTTTGACTCGCGGTTTAATCCTGA-TCA
* * * * * * * * *
5158301 TTGTCATTTCTTGACTCATGATTTAATCCCGATTGTTTTCATTTCTTAAACCCGATTATATTCAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCA-TT-TT-----C---T-GACTCAT
* * * * * * * * * *
5158366 GTTTTGACTAATC-CTAGTCGTTTTCATTTTTTGACCCAAGGTTTCATCTCGATCGTTTTT-ATT
55 G-ATT---TAATCTCGA-TCATTTTCATTTTCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATT
* * * ** * * * * *
5158429 TTTTGACTTGCGATTTAATCTCGGTCTTTTTTGTTTTCT-AAT-GCATAGTTAAATAC-GAGTCA
114 TTTTGACTCGTGATTTAATCTCGGTCGTTTTCATTTTTTGACTCGC--GGTTTAATCCTGA-TCA
* * * * * * * * *
5158491 TTTTCATTTTTTGACTCATAGTTTAATCCCAGTCATTTTCATTTTTTAACTCGTGATTTAATTTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * * * *
5158556 GATCATTTTTCATTCTCTGACGT-GTGATTTAGCTTCAG-TGGTTTTGATTTTCTGACTCATGAT
66 GATCA-TTTTCATTTTCTGAC-TCATGGTTTA-ATACGGTTGTTTTTCATTTTTTGACTCGTGAT
* ** * * * *
5158619 TTATTCTCAATTGTTTTCATTTTTTTGACAT-GTGATTTAAT-ATCGATCA
128 TTAATCTCGGTCGTTTTCA-TTTTTTGAC-TCGCGGTTTAATCCT-GATCA
* * ** ** * * **
5158668 TTTTCGTTTCTTTGACTCATAATTTAATGACGGTTGTTTTTCATTTTTTGACTTGTGATTTAATC
1 TTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTT-ATTTTCATTTTCTGACTCATGATTTAATC
* * * * * * *** * * *
5158733 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCAGTTTAATTTTTTGACTTGTGGTT
64 TCGATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGATT
* * * * * * *** * ** * *
5158798 TAATCTCGATTGCCTTT-GTTTTCTAACTTATGATTTAATTTTGGTCT
129 TAATCTCGGTCG-TTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* *** * * * **
5158845 TTTTAATTTTTTGACTTACGATTTAATTCCTACCG--CTTTT-ATTCCCTGACTCATGATTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAA-T-CT-CGGTTATTTTCATTTTCTGACTCATGATTTAAT
* * * * * * ** *
5158907 C-CTAGTCAGTTTCATTTTTCTGATTCGTGATTTAATCCTTATTG-TTTTCATTTTCTGACTCGT
63 CTCGA-TCATTTTCA-TTTTCTGACTCATGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGT
* * * * * * * ** * * *
5158970 GCTTTAATTTTGGTTGTTTTCATTATCTAAGACACGGTCTAATACCT-CTCA
125 GATTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAAT-CCTGATCA
* * * ** *
5159021 TTTTCATTTTCTGA--C-----TT-A--T--G--ATTTTCATTTT-TCGACTCGTGGTTTTTTTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCT-GACTCATGATTTAATCT
* * ** *
5159071 C-ATTCATTTTCATTTTTTGACTCATGGTTTAATCCCAATTATTTTTC---TTTT---TC---AT
65 CGA-TCATTTTCATTTTCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTGAT
* * * * ** * *
5159126 TT--T-TTGATCGTTTTCATTTTCTAACTCGTAGCTTAATTCC-AATCA
128 TTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAA-TCCTGATCA
* * * * * ** **
5159171 TTTTCATTTTTTGACTCATGGTTTAGTCAT--ATTCATTTTTATTTTTCTAACTGGTGGCTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTT-ATTTTCA-TTTTCTGACTCATGATTTAAT
* * * * *
5159234 CACGGTC-TTTTCCATTTTTTGACTCATGGTTTAAT-C--TTAGTCGTTTCCATTTTTTGGCTCG
63 CTCGATCATTTT-CATTTTCTGACTCATGGTTTAATACGGTT-GT--TTTTCATTTTTTGACTCG
* * * *** * **
5159295 TGCTTTAATCTAGGTC-ATTT--TTTTTTGACTCAATGTTTAATCC-CACTTG
124 TGATTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGA-TCA
* * * * * *
5159344 TTTTCATTTTCTGACTCGTGGTTTAATC-CATGTTGTTTTTCATTTTTTAACTCGT-ACTTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTT-ATTTTCATTTTCTGACTCATGA-TTTAAT
* * * * **** * *
5159407 CGCTG-TCATTTTCA-TTTCTTGACTCATGATTCAA-GCTGG-TCACATTCATTTTCTAACTCGT
63 CTC-GATCATTTTCATTTTC-TGACTCATGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGT
* * ** * * * *
5159468 GGTTTAGTC-C---C--AATCATTTTTT---T-TC-ATTT--TTC-GATCG
125 GATTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
** ** * *
5159505 TTTTCATTTTTTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTCTGACTCA-AAGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGA-TTTAATCT
* * * * **
5159569 CGGTC-TTTTCCTTTTTCT-AGCT-AGTGGTTTAAT-CTCGATCATTTTCATTTTTTGACTCGT-
65 CGATCATTTT-CATTTTCTGA-CTCA-TGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGTG
*** * * * * *
5159629 AGTTTAATCTTTATCGTTTTCATTTTTTGACTAGTGATTTAATCTTGGTCA
126 A-TTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * ** ** * *
5159680 CTTCTT-A-TTTCTGACTCATGATTTAATCTTAGTCGTTGTCA-TTTCTTGACTCATGATTCAAT
1 -TT-TTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTC-TGACTCATGATTTAAT
* ** * * * * * * *
5159742 CCCGATTGTTTTCA-ATTCTTAACTCGTGATTTAA-ACCCGATAG-TATTCATTTTTTGACTCGT
63 CTCGATCATTTTCATTTTC-TGACTCATGGTTTAATA--CGGTTGTTTTTCATTTTTTGACTCGT
* * ** * *
5159804 GGTTTAATC-CTGGTCATTTT-ATTTTTTGACTCATGGTTTCAT-CTCGATCG
125 GATTTAATCTC-GGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCT-GATCA
* * * ** *
5159854 TTTTCATTTTCTAACTCGCGGTTTAATCT---TTAACTTTTTTGTTTTCTAACTCAT-AGTTTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTT-A--TTTTCATTTTCTGACTCATGA-TTTAA
* * * * * * * * ** * * *
5159915 TAC-AGGTCATTTTTATTTTTTGACTCGTAGTTTAAT-CTCGATCATTTTCATTTTTTAACCCAT
62 T-CTCGATCATTTTCATTTTCTGACTCATGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGT
* * * * *** * * * * * **
5159978 AATTTAATTTCGATCATTTTTCATTCACTGACAT-GTGATTTAGT-TTCGGTGG
125 GATTTAATCTCGGTC-GTTTTCATTTTTTGAC-TCGCGGTTTAATCCT-GATCA
* * * * * * * * * *
5160030 TTTTGATTTTCTGACTCATGATTTATTTTCAG-TAGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTA-TTTTCATTTTCTGAC-TCATGATTTAATC
* * * *
5160093 TTGATCATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGA
64 TCGATCATTTTCATTT-TCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTGA
* *
5160158 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
127 TTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* ** *
5160207 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * * *
5160272 GGTCATTTTCATTTTTCTTATTCATGATTTAATCCTCGTTG-TTTTCATTTTCTCACTCATGATT
66 GATCATTTTCA-TTTTCTGACTCATGGTTTAATAC-GGTTGTTTTTCATTTTTTGACTCGTGATT
* * * * * * ** * * * *
5160336 TAATTTTGGTTG-TTTCATTATCTAAGACACAGTCTAATCC-CATTCA
129 TAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGA-TCA
* ** * * * *
5160382 TTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCAATTTCATTTTCTAACTCAT-AGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGA-TTTAATCT
* * * * * * *
5160446 CGATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCAT-TTTTTCTTTTTTTGACTGGTGG
65 CGATCATTTTCATTTTCTGACTCATGGTTTAATAC-GGT--TGTTTTTCATTTTTTGACTCGTGA
* * * * *
5160510 TTTAATC-CTGGTTGTTTTCAATTTTTGACTTGTGGTTTAAT-CTGGCTCA
127 TTTAATCTC-GGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCT-GATCA
* * * * * * *
5160559 TTTTCATTTTCTAACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGG-TTATTTTCATTTTCTGACTCATGATTTAATC-
* * * ** * * *
5160623 TAG-TCATTTTCATTTTTTGACTCGTGGTCCAATCATGGTCGTTTTTCATTTTTTGACTCGTGGT
64 TCGATCATTTTCATTTTCTGACTCATGGTTTAAT-ACGGTTGTTTTTCATTTTTTGACTCGTGAT
* ** * * * * *
5160687 TTAATCCCTATCATTTTTCTTTTTTTGA-T-GGGTAGTTTAATCCCGATCG
128 TTAATCTCGGTC-GTTTTCATTTTTTGACTCGCG--GTTTAATCCTGATCA
* ** * * * * * *
5160736 TTTTCATTTTCTGACTTATGGTTTAATCTGGGTTGTTTTTATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * ** *
5160801 CATCGTTTTCATTTTTTGACTCACGGTTTAAT-CGCG-TCATTTTCATTTTTTTTGACTTGTGAT
66 GATCATTTTCATTTTCTGACTCATGGTTTAATACG-GTTGTTTTTCA--TTTTTTGACTCGTGAT
* * * *
5160864 TTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCACT-ATCG
128 TTAATCTCGGTCGTT-TTCATTTTTTGACTCGCGGTTTAATC-CTGATCA
* * * * * **** * * *
5160913 TTTTCATTTCTTAACTCGTGATTTGAACCT-GATCGCATTAATTTTCTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTT-AATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * *
5160977 CAATCATTTTTCATTTTC--A-T--T--TTT--T--GATCG-TTTTCATTTTCTAACCCGT-AGC
65 CGATCA-TTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGA-T
* * * ** * *
5161029 TTAATGCT-AGTCATTTTCATTTTCTGACTCATGGTTTAGTCCTGTTCA
128 TTAAT-CTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * * * * *
5161077 TTTT--TTTTTTGACTGGTGGTTCAATCACGATCATTTCCATTTTTTGACTCATTG-TTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCA-TGATTTAATCT
* * * * ** * * * *
5161139 -TAGTCGTTTCCATTTTCTGGCTTGTGCTTTAAT-C--TATGTCATTT--TTTTTTAACTCAATG
65 CGA-TCATTTTCATTTTCTGACTCATGGTTTAATACGGT-TGT-TTTTCATTTTTTGACTC-GTG
* * * ** * * ** * **
5161198 -CTCAATCACACTTGTTTTCATTTTCTGACTCATGGTTTAATCCATGTTGT
126 ATTTAATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCC-TGATCA
* ** * * * *
5161248 TTTTCATTTTTTAACTCGTACTTTAATCGCAGTTATTTTCA-TTTCTTGACTCATGATTCAAACT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTC-TGACTCATGATTTAATCT
* * * * * * * * *
5161312 -GGTCATATTCATTTTCTAACTCGTGGTTTAGT-C--CTG---ATCATTTTTT---T-TTCATTT
65 CGATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGATTT
* * ** * *
5161366 --T-TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTTATCG
130 AATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
* * * *
5161409 TTTTCATTTTTTGACTAGTGATTTAATC-CTGGTCACTTGTT-A-TTTCTGACTCGTGATTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTTA-TT-TTCATTTTCTGACTCATGATTTAAT
** * * * * * * *
5161471 CTTAATCGTTGTCA-TTTCTTGACTCATGATTTAATCCGATTG-TTTTCATTTCTTAACTCGTGA
63 CTCGATCATTTTCATTTTC-TGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGA
* * * * * * * * *
5161534 TTTAAGCCCGAT-TTTATTCA-TTTTTGACTTGTGGTCTAATCCTGGTCG
127 TTTAATCTCGGTCGTT-TTCATTTTTTGACTCGCGGTTTAATCCTGATCA
** * * ** * * * *
5161582 TTTTCA-TTTTTGACTAATGGTTTCATCTCAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * **
5161646 GATCTTTTTTATTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTC
66 GATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTC
5161703 ACAGTTTATT
Statistics
Matches: 4057, Mismatches: 1178, Indels: 830
0.67 0.19 0.14
Matches are distributed among these distances:
150 41 0.01
151 2 0.00
152 1 0.00
153 3 0.00
156 2 0.00
157 2 0.00
159 10 0.00
160 42 0.01
161 221 0.05
162 269 0.07
163 17 0.00
164 98 0.02
165 119 0.03
166 12 0.00
167 37 0.01
168 18 0.00
169 27 0.01
170 53 0.01
171 30 0.01
172 137 0.03
173 186 0.05
174 345 0.09
175 546 0.13
176 557 0.14
177 914 0.23
178 189 0.05
179 51 0.01
180 1 0.00
182 1 0.00
185 1 0.00
186 3 0.00
187 4 0.00
188 2 0.00
189 10 0.00
190 96 0.02
191 7 0.00
192 1 0.00
193 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (175 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTCATTTTCTGACTCATGATTTAATCTC
GATCATTTTCATTTTCTGACTCATGGTTTAATACGGTTGTTTTTCATTTTTTGACTCGTGATTTA
ATCTCGGTCGTTTTCATTTTTTGACTCGCGGTTTAATCCTGATCA
Found at i:5156396 original size:107 final size:106
Alignment explanation
Indices: 5156285--5156753 Score: 328
Period size: 107 Copynumber: 4.4 Consensus size: 106
5156275 CTAACTCATA
* *
5156285 GTTTAATCTCGATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
*
5156350 ACTGGTGGTTTAATCCTGGTTGTTTTCAATTTTTGACTTGTG
65 ACTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
* * * ** * *
5156392 GTTTAATCTGGCTCATTTTCATTTTCTAACTCATGGCTTAATCAGGAT--TATTTTCATTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
** * * * * *
5156455 ACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTG
65 ACTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
** * * * *
5156497 GTCCAATCATGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCA-TTTTTCTTTTTT
1 GTTTAATC-TGATC-ATTTTCATTTTCTGACTCATGGTTTAAT-CCTGATCATTTTTTCTTTTTT
* * * *
5156560 TGA-TGGGTAGTTTAATCCCGATCGTTTTC-ATTTTCTGACTTATG
63 TGACT-GGTGGTTTAATCCTGGTCGTTTTCAATTTT-TGACTTGTG
* ** * * ** * *
5156604 GTTTAATCTGGGTTGTTTTTATTTTTTGACTCATGGTTTAATCCCCATC--GTTTTCATTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
*** * *
5156667 ACTCACGGTTTAAT-C-GCGTCATTTTCATTTTTTTTGACTTGTG
65 ACTGGTGGTTTAATCCTG-GTCGTTTTCA--ATTTTTGACTTGTG
* * * * * *
5156710 ATTTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 GTTTAATC-TGATCATT-TTCATTTTCTGACTCATGGTTTAATC
5156754 ACTATCGTTT
Statistics
Matches: 283, Mismatches: 63, Indels: 32
0.75 0.17 0.08
Matches are distributed among these distances:
103 1 0.00
104 8 0.03
105 78 0.28
106 82 0.29
107 114 0.40
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (106 bp):
GTTTAATCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTGA
CTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
Found at i:5156553 original size:142 final size:140
Alignment explanation
Indices: 5156230--5156697 Score: 390
Period size: 142 Copynumber: 3.3 Consensus size: 140
5156220 ATCCCATTCA
* ** * * *
5156230 TTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCAATTTCATTTTCTAACTCATAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCA-TCATTTTCATTTTCTAACTCATAGCTTAATCAC
* * * * *
5156295 GATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCATTTTTTCTTTTTTTGACTGGTGGTT
65 GATCATTTTCATTTTCTGACCCATGGTTTAATCATGATCA-TTTTTCATTTTTTGACTCGTGGTC
* * *
5156360 TAATCCTGGTTG
129 CAATCATGGTCG
* * *
5156372 TTTTCAATTTTTGACTTGTGGTTTAATCTGGC-TCATTTTCATTTTCTAACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCT--CATCATTTTCATTTTCTAACTCATAGCTTAATCA
* * * *
5156436 GGATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCA-TTTTCATTTTTTGACTCGTGGT
64 CGATCATTTTCATTTTCTGACCCATGGTTTAATCATGA-TCATTTTTCATTTTTTGACTCGTGGT
5156499 CCAATCATGGTCG
128 CCAATCATGGTCG
* * * * ** *
5156512 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-TGGGTAGTTTAAT
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTC-ATCA-TTTTCATTTTCTAACT-CATAGCTTAAT
* * ** * ** *
5156576 CCCGATCGTTTTCATTTTCTGACTTATGGTTTAATC-TGGGTTGTTTTT-ATTTTTTGACTCATG
62 CACGATCATTTTCATTTTCTGACCCATGGTTTAATCAT-GATCATTTTTCATTTTTTGACTCGTG
** ****
5156639 GTTTAATCCCCATCG
126 GTCCAATCATGGTCG
** * *
5156654 TTTTCATTTTTTGACTCACGGTTTAATCGCGTCATTTTCATTTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCATCATTTTCATTTT
5156698 TTTTGACTTG
Statistics
Matches: 263, Mismatches: 52, Indels: 25
0.77 0.15 0.07
Matches are distributed among these distances:
139 10 0.04
140 32 0.12
141 59 0.22
142 157 0.60
143 4 0.02
144 1 0.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (140 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCATCATTTTCATTTTCTAACTCATAGCTTAATCACG
ATCATTTTCATTTTCTGACCCATGGTTTAATCATGATCATTTTTCATTTTTTGACTCGTGGTCCA
ATCATGGTCG
Found at i:5156926 original size:35 final size:35
Alignment explanation
Indices: 5156887--5156988 Score: 98
Period size: 36 Copynumber: 2.9 Consensus size: 35
5156877 TTAATTCTAG
* *
5156887 TCATTTTCATTTTCTGACTCATGGTTTAGTC-CTGT
1 TCATTTTCATTTTCTGACTCATGGTTTAATCAC-GA
* ** *
5156922 TCATTTTTATTTTTCTGACTGGTGGTTCAATCACGA
1 TCATTTTCA-TTTTCTGACTCATGGTTTAATCACGA
* * *
5156958 TCATTTCCATTTTTTGACTCATTGTTTAATC
1 TCATTTTCATTTTCTGACTCATGGTTTAATC
5156989 TTAGTCGTTT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
35 25 0.48
36 26 0.50
37 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACTCATGGTTTAATCACGA
Found at i:5157273 original size:35 final size:35
Alignment explanation
Indices: 5157222--5158025 Score: 303
Period size: 35 Copynumber: 22.9 Consensus size: 35
5157212 TTCATTTTTC
* *
5157222 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
*
5157257 TATCGTTTTCATTTTTTGACT-AGTGATTTAATCCT
1 GATCGTTTTCATTTTTTGACTCA-TGATTTAATCCT
* * * * *
5157292 GGTCACTTGTT-A-TTTCTGACTCGTGATTTAATCTT
1 GATC-GTT-TTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5157327 AATTGTTGTCATTTCTTGTCTCATGATTTAATCCC
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5157362 GATTGTTTTCATTTCTTAACTCGTGATTTAAGCCC
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* ** * *
5157397 GAT-TTTATTCA-TTTTTGACTTGTGGTCTAATCCT
1 GATCGTT-TTCATTTTTTGACTCATGATTTAATCCT
* * * *
5157431 GGTCGTTTTCATTTTTTGACTAATGGTTTCAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5157465 CAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 GA-TCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5157501 GATCTTTTTTATTTTCTAACT--TGTAGTTTAATACG
1 GATCGTTTTCATTTTTTGACTCATG-A-TTTAATCCT
* * * *
5157536 GGTCATTTTCATTTTTTGACTCA-CAGTTTATTCCT
1 GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * * * *
5157571 GGTCATTTTCATTTTTTAACTTATGATTTAAT-TT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5157605 CGATCATTTTTCATTCTCTGACAT-GTGATTTAGT-TT
1 -GATC-GTTTTCATTTTTTGAC-TCATGATTTAATCCT
* * * * *
5157641 CGGTGGTTTTGATTTTTCGACTCATGATTTACT-CT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5157676 CAGTAGTTTTCATTTTTTGACAT-GTGATTTAAT-AT
1 GA-TCGTTTTCATTTTTTGAC-TCATGATTTAATCCT
* ** *** * *
5157711 CGATCATTTTTGTTTCTCCAACTCATGATTTAATGACG
1 -GATCGTTTTCATTT-TTTGACTCATGATTTAAT-CCT
* **
5157749 GCT-GTTTTTCATTTTTTGACTTGTGATTTAAT-CT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* *
5157783 CGATCGTTTTCATTTTTTGACTCA-CAGTTTAATCTT
1 -GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * *
5157819 GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* ** * * **
5157853 CGATTGTTTTTGTTTTCTGACTCATTATTTAATTTT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* *
5157889 GGTCATTTTCATTTTTTGACT--TGTAGTTTAATTCC-
1 GATCGTTTTCATTTTTTGACTCATG-A-TTTAA-TCCT
**
5157924 -ATCGCTTTT-ATTTCCTGACTCATGATTTAATCCT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* * *
5157958 -AGTCATTTTCATTTTTTTGATTCGTGATTTAATCCTT
1 GA-TCGTTTTCA-TTTTTTGACTCATGATTTAATCC-T
* *
5157995 G-TTGTTTTCATTTTCTGACTCGA-GATTTAAT
1 GATCGTTTTCATTTTTTGACTC-ATGATTTAAT
5158026 TTTGGTTGTT
Statistics
Matches: 562, Mismatches: 159, Indels: 96
0.69 0.19 0.12
Matches are distributed among these distances:
33 6 0.01
34 58 0.10
35 395 0.70
36 90 0.16
37 13 0.02
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (35 bp):
GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
Found at i:5157739 original size:71 final size:72
Alignment explanation
Indices: 5157660--5157792 Score: 180
Period size: 72 Copynumber: 1.9 Consensus size: 72
5157650 TGATTTTTCG
* *
5157660 ACTCATGATTTACTCTCAG-TAG-TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTG
1 ACTCATGATTTAATCACAGCT-GTTTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTG
5157723 TTTCTCCA
65 TTTCTCCA
* * * * *
5157731 ACTCATGATTTAATGACGGCTGTTTTTCATTTTTTGACTTGTGATTTAATCTCGATCGTTTT
1 ACTCATGATTTAATCACAGCTGTTTTTCATTTTTTGACATGTGATTTAATATCGATCATTTT
5157793 CATTTTTTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
71 16 0.30
72 37 0.70
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.50
Consensus pattern (72 bp):
ACTCATGATTTAATCACAGCTGTTTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTGT
TTCTCCA
Found at i:5157740 original size:106 final size:107
Alignment explanation
Indices: 5157576--5157803 Score: 246
Period size: 106 Copynumber: 2.1 Consensus size: 107
5157566 TTCCTGGTCA
* * * ** * * **
5157576 TTTTCATTTTTTAACTTATGATTTAATTTCGATCATTTTTCATTCTCTGACATGTGATTTAGTTT
1 TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACATATGATTTAATGA
* *
5157641 CGG-TGGTTTTGATTTTTCGACTCATGATTTACTCTC-AGTAG
66 CGGCTGGTTTTCATTTTTCGACTCATGATTTAATCTCGA-TAG
* **
5157682 TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTTGTTTCTCCAAC-TCATGATTTAATG
1 TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACAT-ATGATTTAATG
* * ** *
5157746 ACGGCTGTTTTTCATTTTTTGACTTGTGATTTAATCTCGATCG
65 ACGGCTGGTTTTCATTTTTCGACTCATGATTTAATCTCGATAG
5157789 TTTTCATTTTTTGAC
1 TTTTCATTTTTTGAC
5157804 TCACAGTTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
105 1 0.01
106 54 0.54
107 44 0.44
108 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (107 bp):
TTTTCATTTTTTGACATATGATTTAATATCGATCATTTTTCATTCTCCAACATATGATTTAATGA
CGGCTGGTTTTCATTTTTCGACTCATGATTTAATCTCGATAG
Found at i:5157983 original size:140 final size:140
Alignment explanation
Indices: 5157754--5158041 Score: 347
Period size: 140 Copynumber: 2.1 Consensus size: 140
5157744 TGACGGCTGT
* ** *
5157754 TTTTCATTTTTTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACAGTTTAATCTT
1 TTTTCATTTTTTGACTTGTGATTTAATCTCCATCGTTTTCATTTCCTGACTCACAGTTTAATCTA
* ** *
5157819 GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGATTGTTTTTGTTTTCTGACTC-ATTATT
66 GATCATTTTCATTTTTTGACTCGTGATTTAATCCTCG-TTGTTTTCATTTTCTGACTCGA-GATT
5157882 TAATTTTGGTCA
129 TAATTTTGGTCA
*
5157894 TTTTCATTTTTTGACTTGT-AGTTTAAT-TCCATCGCTTTT-ATTTCCTGACTCA-TGATTTAAT
1 TTTTCATTTTTTGACTTGTGA-TTTAATCTCCATCG-TTTTCATTTCCTGACTCACAG-TTTAAT
* *
5157955 CCTAG-TCATTTTCATTTTTTTGATTCGTGATTTAATCCTTGTTGTTTTCATTTTCTGACTCGAG
63 -CTAGATCATTTTCA-TTTTTTGACTCGTGATTTAATCCTCGTTGTTTTCATTTTCTGACTCGAG
**
5158019 ATTTAATTTTGGTTG
126 ATTTAATTTTGGTCA
5158034 TTTTCATT
1 TTTTCATT
5158042 ATCTAAGACA
Statistics
Matches: 128, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
138 1 0.01
139 33 0.26
140 90 0.70
141 4 0.03
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (140 bp):
TTTTCATTTTTTGACTTGTGATTTAATCTCCATCGTTTTCATTTCCTGACTCACAGTTTAATCTA
GATCATTTTCATTTTTTGACTCGTGATTTAATCCTCGTTGTTTTCATTTTCTGACTCGAGATTTA
ATTTTGGTCA
Found at i:5158136 original size:35 final size:35
Alignment explanation
Indices: 5158090--5158258 Score: 130
Period size: 35 Copynumber: 4.8 Consensus size: 35
5158080 TGACTTATGA
**
5158090 TTTTCATTTTCTGACTCGTGGTTTAATCTTAATCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCTCGATCG
* *
5158125 TTTTCATTTTCTGACTCAAT-GTTTAATCTCGATCCT
1 TTTTCATTTTCTGACTC-GTGGTTTAATCTCGAT-CG
* * * *
5158161 TTTTCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCA
1 TTTTCATTTTCTGA-CTCGTGGTTTAATCTCGATCG
* * *
5158196 TTTTTATTTT-TCAACTCGTGGTTTAATC-CTTATCG
1 TTTTCATTTTCT-GACTCGTGGTTTAATCTC-GATCG
* * * *
5158231 TTTTCATTTTTTTACTAGTGATTTAATC
1 TTTTCATTTTCTGACTCGTGGTTTAATC
5158259 CTAGTCACTT
Statistics
Matches: 107, Mismatches: 19, Indels: 16
0.75 0.13 0.11
Matches are distributed among these distances:
34 2 0.02
35 76 0.71
36 29 0.27
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCTCGATCG
Found at i:5158316 original size:35 final size:35
Alignment explanation
Indices: 5158272--5158347 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
5158262 GTCACTTTTT
*
5158272 ATTTC-TGACTTATAATTTAATCTCAG-TTGTTGTC
1 ATTTCTTGACTCATAATTTAATC-CAGATTGTTGTC
* * *
5158306 ATTTCTTGACTCATGATTTAATCCCGATTGTTTTC
1 ATTTCTTGACTCATAATTTAATCCAGATTGTTGTC
5158341 ATTTCTT
1 ATTTCTT
5158348 AAACCCGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 7 0.19
35 29 0.81
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (35 bp):
ATTTCTTGACTCATAATTTAATCCAGATTGTTGTC
Found at i:5158552 original size:35 final size:35
Alignment explanation
Indices: 5158472--5158542 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
5158462 TTTTCTAATG
* * * *
5158472 CATAGTTAAATACGAGTCATTTTCATTTTTTGACT
1 CATAGTTTAATCCCAGTCATTTTCATTTTTTAACT
5158507 CATAGTTTAATCCCAGTCATTTTCATTTTTTAACT
1 CATAGTTTAATCCCAGTCATTTTCATTTTTTAACT
5158542 C
1 C
5158543 GTGATTTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.46
Consensus pattern (35 bp):
CATAGTTTAATCCCAGTCATTTTCATTTTTTAACT
Found at i:5158562 original size:35 final size:35
Alignment explanation
Indices: 5158488--5158807 Score: 159
Period size: 35 Copynumber: 9.0 Consensus size: 35
5158478 TAAATACGAG
* * *
5158488 TCATTTTCATTTTTTGACTCAT-AGTTTAA-TCCCA
1 TCATTTTCATTTTTTGACTCGTGA-TTTAATTTCGA
*
5158522 GTCATTTTCATTTTTTAACTCGTGATTTAATTTCGA
1 -TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
* * **
5158558 TCATTTTTCATTCTCTGACGT-GTGATTTAGCTTC-A
1 TCA-TTTTCATTTTTTGAC-TCGTGATTTAATTTCGA
** * * * *
5158593 GTGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAA
1 -TCATTTTCATTTTTTGACTCGTGATTTAATT-TCGA
** *
5158629 TTGTTTTCATTTTTTTGACAT-GTGATTTAATATCGA
1 TCATTTTCA-TTTTTTGAC-TCGTGATTTAATTTCGA
* * * ** *
5158665 TCATTTTCGTTTCTTTGACTCATAATTTAATGACGGT
1 TCATTTTCATTT-TTTGACTCGTGATTTAATTTC-GA
** * *
5158702 TGTTTTTCATTTTTTGACTTGTGATTTAATCTCGA
1 TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
* ** * *
5158737 TCGTTTTCATTTTTTGACTCACGGTTTAA-TCCTGA
1 TCATTTTCATTTTTTGACTCGTGATTTAATTTC-GA
* * * * *
5158772 TCAGTTTAATTTTTTGACTTGTGGTTTAATCTCGA
1 TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
5158807 T
1 T
5158808 TGCCTTTGTT
Statistics
Matches: 214, Mismatches: 55, Indels: 32
0.71 0.18 0.11
Matches are distributed among these distances:
34 3 0.01
35 113 0.53
36 84 0.39
37 14 0.07
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCGTGATTTAATTTCGA
Found at i:5158672 original size:36 final size:35
Alignment explanation
Indices: 5158632--5158755 Score: 101
Period size: 36 Copynumber: 3.5 Consensus size: 35
5158622 TTCTCAATTG
5158632 TTTTCATTTTTTTGACATGTGATTTAATATCGATCA
1 TTTTCATTTTTTTGAC-TGTGATTTAATATCGATCA
* * * * * **
5158668 TTTTCGTTTCTTTGACTCATAATTTAATGA-CGGTTGT
1 TTTTCATTTTTTTGACT-GTGATTTAAT-ATC-GATCA
* *
5158705 TTTTCA-TTTTTTGACTTGTGATTTAATCTCGATCG
1 TTTTCATTTTTTTGAC-TGTGATTTAATATCGATCA
5158740 TTTTCA-TTTTTTGACT
1 TTTTCATTTTTTTGACT
5158756 CACGGTTTAA
Statistics
Matches: 68, Mismatches: 15, Indels: 12
0.72 0.16 0.13
Matches are distributed among these distances:
34 1 0.01
35 18 0.26
36 40 0.59
37 9 0.13
ACGTcount: A:0.19, C:0.13, G:0.13, T:0.55
Consensus pattern (35 bp):
TTTTCATTTTTTTGACTGTGATTTAATATCGATCA
Found at i:5158693 original size:72 final size:71
Alignment explanation
Indices: 5158597--5158757 Score: 189
Period size: 72 Copynumber: 2.3 Consensus size: 71
5158587 GCTTCAGTGG
* * * * *
5158597 TTTTGATTTTCTGACTCATGATTTATTCTCAATTG-TTTTCATTTTTTTGACATGTGATTTAATA
1 TTTTCATTTTTTGACTCATAATTTAATCACAATTGTTTTTCA-TTTTTTGACATGTGATTTAATA
5158661 TCGATCA
65 TCGATCA
* * ** * *
5158668 TTTTCGTTTCTTTGACTCATAATTTAATGACGGTTGTTTTTCATTTTTTGACTTGTGATTTAATC
1 TTTTCATTT-TTTGACTCATAATTTAATCACAATTGTTTTTCATTTTTTGACATGTGATTTAATA
*
5158733 TCGATCG
65 TCGATCA
5158740 TTTTCATTTTTTGACTCA
1 TTTTCATTTTTTGACTCA
5158758 CGGTTTAATC
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
71 16 0.21
72 53 0.71
73 6 0.08
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.54
Consensus pattern (71 bp):
TTTTCATTTTTTGACTCATAATTTAATCACAATTGTTTTTCATTTTTTGACATGTGATTTAATAT
CGATCA
Found at i:5158835 original size:70 final size:70
Alignment explanation
Indices: 5158710--5158943 Score: 179
Period size: 70 Copynumber: 3.3 Consensus size: 70
5158700 GTTGTTTTTC
* * * *
5158710 ATTTTTTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
1 ATTTTTTGACTTGTGATTTAATCTCGATCGCTTTCATTTTCTAACTCACGATTTAATCCTGATCA
5158775 GTTTA
66 GTTTA
* * * * * ** *
5158780 ATTTTTTGACTTGTGGTTTAATCTCGATTGCCTTT-GTTTTCTAACTTATGATTTAATTTTGGTC
1 ATTTTTTGACTTGTGATTTAATCTCGATCG-CTTTCATTTTCTAACTCACGATTTAATCCTGATC
**
5158844 TTTTTA
65 AGTTTA
** * * * ** * *
5158850 ATTTTTTGACTTACGATTTAAT-TCCTACCGCTTTTATTCCCTGACTCATGATTTAATCCT-AGT
1 ATTTTTTGACTTGTGATTTAATCT-CGATCGCTTTCATTTTCTAACTCACGATTTAATCCTGA-T
*
5158913 CAGTTTC
64 CAGTTTA
5158920 ATTTTTCTGA-TTCGTGATTTAATC
1 ATTTTT-TGACTT-GTGATTTAATC
5158944 CTTATTGTTT
Statistics
Matches: 124, Mismatches: 33, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
69 5 0.04
70 105 0.85
71 14 0.11
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (70 bp):
ATTTTTTGACTTGTGATTTAATCTCGATCGCTTTCATTTTCTAACTCACGATTTAATCCTGATCA
GTTTA
Found at i:5158970 original size:35 final size:36
Alignment explanation
Indices: 5158890--5158977 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
5158880 CTTTTATTCC
*
5158890 CTGACTCATGATTTAATCCTAGTCAGTTTCATTTTT
1 CTGACTCGTGATTTAATCCTAGTCAGTTTCATTTTT
* *
5158926 CTGATTCGTGATTTAATCCTTA-T-TGTTTTCA-TTTT
1 CTGACTCGTGATTTAATCC-TAGTCAG-TTTCATTTTT
*
5158961 CTGACTCGTGCTTTAAT
1 CTGACTCGTGATTTAAT
5158978 TTTGGTTGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
35 20 0.44
36 23 0.51
37 2 0.04
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (36 bp):
CTGACTCGTGATTTAATCCTAGTCAGTTTCATTTTT
Found at i:5159115 original size:35 final size:35
Alignment explanation
Indices: 5159041--5159123 Score: 80
Period size: 35 Copynumber: 2.4 Consensus size: 35
5159031 CTGACTTATG
* ** **
5159041 ATTTTCATTTTTCGACTCGTGGTTTTTTTTCATTC
1 ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
*
5159076 ATTTTCATTTTTTGACTCATGGTTTAATCCCAATT-
1 ATTTTCATTTTTCGACTCATGGTTTAATCCC-ATTC
5159111 ATTTTTC-TTTTTC
1 A-TTTTCATTTTTC
5159124 ATTTTTTGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
35 31 0.79
36 8 0.21
ACGTcount: A:0.16, C:0.17, G:0.08, T:0.59
Consensus pattern (35 bp):
ATTTTCATTTTTCGACTCATGGTTTAATCCCATTC
Found at i:5159207 original size:35 final size:35
Alignment explanation
Indices: 5159168--5159434 Score: 145
Period size: 35 Copynumber: 7.7 Consensus size: 35
5159158 TTAATTCCAA
* *
5159168 TCATTTTCATTTTTTGACTCATGGTTTAGTCATAT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCATAG
* * ** * **
5159203 TCATTTTTATTTTTCTAACTGGTGGCTTAATCACGG
1 TCATTTTCATTTTT-TGACTCATGGTTTAATCATAG
*
5159239 TC-TTTTCCATTTTTTGACTCATGGTTTAATCTTAG
1 TCATTTT-CATTTTTTGACTCATGGTTTAATCATAG
* * * * *
5159274 TCGTTTCCATTTTTTGGCTCGTGCTTTAATC-TAGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCATA-G
** *
5159309 TCA-TTT--TTTTTTGACTCAAT-GTTTAATCCCAC
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCATAG
** * *
5159341 TTGTTTTCATTTTCTGACTCGTGGTTTAATCCAT-G
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CATAG
** * * ** *
5159376 TTGTTTTTCATTTTTTAACTCGTACTTTAATCGCT-G
1 -TCATTTTCATTTTTTGACTCATGGTTTAATC-ATAG
*
5159412 TCATTTTCATTTCTTGACTCATG
1 TCATTTTCATTTTTTGACTCATG
5159435 ATTCAAGCTG
Statistics
Matches: 171, Mismatches: 48, Indels: 26
0.70 0.20 0.11
Matches are distributed among these distances:
32 18 0.11
33 5 0.03
34 5 0.03
35 92 0.54
36 51 0.30
ACGTcount: A:0.17, C:0.18, G:0.13, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCATAG
Found at i:5159383 original size:67 final size:67
Alignment explanation
Indices: 5159248--5159373 Score: 155
Period size: 67 Copynumber: 1.9 Consensus size: 67
5159238 GTCTTTTCCA
** * * * *
5159248 TTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTTTGGCTCGTGCTTTAATCTAGGTCAT
1 TTTTTTGACTCATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCAGGTCAT
5159313 TT
66 TT
* * *
5159315 TTTTTTGACTCAAT-GTTTAATCCCACTTGTTTTCATTTTCTGACTCGTGGTTTAATCCA
1 TTTTTTGACTC-ATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCA
5159374 TGTTGTTTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 47 0.96
68 2 0.04
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (67 bp):
TTTTTTGACTCATGGTTTAATCCCACTCGTTTCCATTTTCTGACTCGTGCTTTAATCCAGGTCAT
TT
Found at i:5159417 original size:103 final size:105
Alignment explanation
Indices: 5159241--5159432 Score: 230
Period size: 103 Copynumber: 1.8 Consensus size: 105
5159231 AATCACGGTC
* * ** * *
5159241 TTTTCCATTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTTTGGCTCGTGCTTTAATCT
1 TTTTCCATTTTCTGACTCATGGTTTAATCATAGTCGTTTCCATTTTTTAACTCGTACTTTAATCG
5159306 AGGTCATTTT-TTT-TTGACTCAATGTTTAATCCCACTTG
66 AGGTCATTTTATTTCTTGACTCAATGTTTAATCCCACTTG
* * *
5159344 TTTT-CATTTTCTGACTCGTGGTTTAATCCAT-GTTGTTTTTCATTTTTTAACTCGTACTTTAAT
1 TTTTCCATTTTCTGACTCATGGTTTAAT-CATAGTCG-TTTCCATTTTTTAACTCGTACTTTAAT
**
5159407 CGCTGTCATTTTCATTTCTTGACTCA
64 CGAGGTCATTTT-ATTTCTTGACTCA
5159433 TGATTCAAGC
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
102 24 0.33
103 38 0.52
105 3 0.04
106 8 0.11
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (105 bp):
TTTTCCATTTTCTGACTCATGGTTTAATCATAGTCGTTTCCATTTTTTAACTCGTACTTTAATCG
AGGTCATTTTATTTCTTGACTCAATGTTTAATCCCACTTG
Found at i:5159549 original size:35 final size:35
Alignment explanation
Indices: 5159498--5160993 Score: 648
Period size: 35 Copynumber: 42.5 Consensus size: 35
5159488 TTTTCATTTT
5159498 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * ***
5159533 TCAATCGTTTTAATTTTCTGACTCAAAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5159568 TCGGTC-TTTTCCTTTTTCT-AGCTAGTGGTTTAATC
1 TCGATCGTTTTCATTTTT-TGA-CTCGTGGTTTAATC
* *
5159603 TCGATCATTTTCATTTTTTGACTCGTAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * *
5159638 TTTATCGTTTTCATTTTTTGACTAGTGATTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5159673 TTGGTCACTTCTT-A-TTTCTGACTCATGATTTAATC
1 TCGATC-GTT-TTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5159708 T-TAGTCGTTGTCATTTCTTGACTCATGATTCAATC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5159743 CCGATTGTTTTCAATTCTTAACTCGTGATTTAAAC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5159778 CCGATAGTATTCATTTTTTGACTCGTGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5159813 -CTGGTCATTTT-ATTTTTTGACTCATGGTTTCATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5159847 TCGATCGTTTTCATTTTCTAACTCGCGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * * ** * * * *
5159882 TTTAACTTTTTTGTTTTCTAACTCATAGTTTAATAC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-C
* * * * *
5159918 -AGGTCATTTTTATTTTTTGACTCGTAGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * ** *
5159952 TCGATCATTTTCATTTTTTAACCCATAATTTAATT
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* *** * * *
5159987 TCGATCATTTTTCATTCACTGACAT-GTGATTTAGTT
1 TCGATC-GTTTTCATTTTTTGAC-TCGTGGTTTAATC
* * * * * * * *
5160023 TCGGTGGTTTTGATTTTCTGACTCATGATTTATTT
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5160058 TC-AGTAGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TCGA-TCGTTTTCATTTTTTGAC-TCGTGGTTTAATC
* * * * * *
5160093 TTGATCATTTTCATTTCTCTGACTCATGATTTAATG
1 TCGATCGTTTTCATTT-TTTGACTCGTGGTTTAATC
* * * * * *
5160129 ACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TCGATCG-TTTTCATTTTTTGACTCGTGGTTTAATC
**
5160165 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
*
5160200 -CTGATCATTTTCATTTTTTGACTCGTGGTTTAATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * ** * * *
5160235 TCGGTTGTTTTTGTTTTCTGACTCATGATTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5160270 CCGGTCATTTTCATTTTTCTTATTCATGATTTAATCC
1 TCGATCGTTTTCATTTTT-TGACTCGTGGTTTAAT-C
* * * * * *
5160307 TCG-TTGTTTTCATTTTCTCACTCATGATTTAATT
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * ** * * *
5160341 TTGGTTG-TTTCATTATCTAAGACAC--AGTCTAATC
1 TCGATCGTTTTCATT-T-TTTGACTCGTGGTTTAATC
* * * **
5160375 -CCATTCATTTTCATTTTTTGACTCGTGATTTTTTC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
** * * * *
5160410 TC-AGTCAATTTCATTTTCTAACTCATAGTTTAATC
1 TCGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5160445 TCGATCATTTTCATTTTCTGGCCCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5160480 -CTGATCATTTTTTCTTTTTTTGACTGGTGGTTTAATC
1 TC-GATC--GTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5160517 -CTGGTTGTTTTCAATTTTTGACTTGTGGTTTAATC
1 TC-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * * *
5160552 TGGCTCATTTTCATTTTCTAACTCATGGCTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
** ** *
5160587 AGGATTATTTTCATTTTTTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * **
5160622 ATAG-TCATTTTCATTTTTTGACTCGTGGTCCAATC
1 -TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
*
5160657 AT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATC
1 -TCGATCG-TTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5160693 CCTATCATTTTTCTTTTTTTGA-TGGGTAGTTTAATC
1 TCGATC-GTTTTCATTTTTTGACT-CGTGGTTTAATC
* * **
5160729 CCGATCGTTTTCATTTTCTGACTTATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5160764 TGGGTTGTTTTTATTTTTTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * **
5160799 CCCATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5160834 GCG-TCATTTTCATTTTTTTTGACTTGTGATTTAATC
1 TCGATCGTTTTCA--TTTTTTGACTCGTGGTTTAATC
* * *
5160870 TTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TCGATCGTT-TTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5160906 ACTATCGTTTTCATTTCTTAACTCGTGATTTGAACC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTT-AATC
** * * *
5160942 T-GATCGCATTAATTTTCTGACTCATGGTTTAATC
1 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
* * *
5160976 CCAATCATTTTTCATTTT
1 TCGATC-GTTTTCATTTT
5160994 CATTTTTTGA
Statistics
Matches: 1102, Mismatches: 304, Indels: 109
0.73 0.20 0.07
Matches are distributed among these distances:
33 6 0.01
34 73 0.07
35 754 0.68
36 221 0.20
37 44 0.04
38 4 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATC
Found at i:5160548 original size:107 final size:106
Alignment explanation
Indices: 5160437--5160905 Score: 328
Period size: 107 Copynumber: 4.4 Consensus size: 106
5160427 CTAACTCATA
* *
5160437 GTTTAATCTCGATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
*
5160502 ACTGGTGGTTTAATCCTGGTTGTTTTCAATTTTTGACTTGTG
65 ACTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
* * * ** * *
5160544 GTTTAATCTGGCTCATTTTCATTTTCTAACTCATGGCTTAATCAGGAT--TATTTTCATTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
** * * * * *
5160607 ACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTG
65 ACTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
** * * * *
5160649 GTCCAATCATGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCA-TTTTTCTTTTTT
1 GTTTAATC-TGATC-ATTTTCATTTTCTGACTCATGGTTTAAT-CCTGATCATTTTTTCTTTTTT
* * * *
5160712 TGA-TGGGTAGTTTAATCCCGATCGTTTTC-ATTTTCTGACTTATG
63 TGACT-GGTGGTTTAATCCTGGTCGTTTTCAATTTT-TGACTTGTG
* ** * * ** * *
5160756 GTTTAATCTGGGTTGTTTTTATTTTTTGACTCATGGTTTAATCCCCATC--GTTTTCATTTTTTG
1 GTTTAATCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTG
*** * *
5160819 ACTCACGGTTTAAT-C-GCGTCATTTTCATTTTTTTTGACTTGTG
65 ACTGGTGGTTTAATCCTG-GTCGTTTTCA--ATTTTTGACTTGTG
* * * * * *
5160862 ATTTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 GTTTAATC-TGATCATT-TTCATTTTCTGACTCATGGTTTAATC
5160906 ACTATCGTTT
Statistics
Matches: 283, Mismatches: 63, Indels: 32
0.75 0.17 0.08
Matches are distributed among these distances:
103 1 0.00
104 8 0.03
105 78 0.28
106 82 0.29
107 114 0.40
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (106 bp):
GTTTAATCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTTCTTTTTTTGA
CTGGTGGTTTAATCCTGGTCGTTTTCAATTTTTGACTTGTG
Found at i:5160705 original size:142 final size:140
Alignment explanation
Indices: 5160382--5160849 Score: 390
Period size: 142 Copynumber: 3.3 Consensus size: 140
5160372 ATCCCATTCA
* ** * * *
5160382 TTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCAATTTCATTTTCTAACTCATAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCA-TCATTTTCATTTTCTAACTCATAGCTTAATCAC
* * * * *
5160447 GATCATTTTCATTTTCTGGCCCATGGTTTAATCCTGATCATTTTTTCTTTTTTTGACTGGTGGTT
65 GATCATTTTCATTTTCTGACCCATGGTTTAATCATGATCA-TTTTTCATTTTTTGACTCGTGGTC
* * *
5160512 TAATCCTGGTTG
129 CAATCATGGTCG
* * *
5160524 TTTTCAATTTTTGACTTGTGGTTTAATCTGGC-TCATTTTCATTTTCTAACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCT--CATCATTTTCATTTTCTAACTCATAGCTTAATCA
* * * *
5160588 GGATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCA-TTTTCATTTTTTGACTCGTGGT
64 CGATCATTTTCATTTTCTGACCCATGGTTTAATCATGA-TCATTTTTCATTTTTTGACTCGTGGT
5160651 CCAATCATGGTCG
128 CCAATCATGGTCG
* * * * ** *
5160664 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-TGGGTAGTTTAAT
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTC-ATCA-TTTTCATTTTCTAACT-CATAGCTTAAT
* * ** * ** *
5160728 CCCGATCGTTTTCATTTTCTGACTTATGGTTTAATC-TGGGTTGTTTTT-ATTTTTTGACTCATG
62 CACGATCATTTTCATTTTCTGACCCATGGTTTAATCAT-GATCATTTTTCATTTTTTGACTCGTG
** ****
5160791 GTTTAATCCCCATCG
126 GTCCAATCATGGTCG
** * *
5160806 TTTTCATTTTTTGACTCACGGTTTAATCGCGTCATTTTCATTTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCATCATTTTCATTTT
5160850 TTTTGACTTG
Statistics
Matches: 263, Mismatches: 52, Indels: 25
0.77 0.15 0.07
Matches are distributed among these distances:
139 10 0.04
140 32 0.12
141 59 0.22
142 157 0.60
143 4 0.02
144 1 0.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (140 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCATCATTTTCATTTTCTAACTCATAGCTTAATCACG
ATCATTTTCATTTTCTGACCCATGGTTTAATCATGATCATTTTTCATTTTTTGACTCGTGGTCCA
ATCATGGTCG
Found at i:5160934 original size:71 final size:70
Alignment explanation
Indices: 5159505--5162161 Score: 579
Period size: 70 Copynumber: 37.7 Consensus size: 70
5159495 TTTTCGATCG
* * * * * ** *
5159505 TTTTCATTTTTTGACTCGTGGTTTAATCTCAATCGTTTTAATTTTCTGACTCAAAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
**
5159570 GGTC-
66 TATCA
* * * * * * *
5159574 TTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGATCATTTTCATTTTTTGACTCGTAGTTTAATC
1 TTTTCATTTTT-TGA-CTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATC
** *
5159638 TTTATCG
64 ACTATCA
* ** * * * *
5159645 TTTTCATTTTTTGACTAGTGATTTAATCTTGGTCACTTCTT-A-TTTCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATC-GTT-TTCATTTTTTGACTCATGGTTTAATC
* *
5159708 -TTAGTCG
64 ACTA-TCA
* * * * * * * * * * * *
5159715 TTGTCATTTCTTGACTCATGATTCAATCCCGATTGTTTTCAATTCTTAACTCGTGATTTAAACCC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
*
5159780 GAT-A
66 TATCA
* * * * * * *
5159784 GTATTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTT-ATTTTTTGACTCATGGTTTCATCT
1 -TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
* *
5159848 CGATCG
65 CTATCA
* * * * *** * * ** * * *
5159854 TTTTCATTTTCTAACTCGCGGTTTAATCTTTAACTTTTTTGTTTTCTAACTCATAGTTTAAT-AC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
5159918 -AGGTCA
66 TA--TCA
* * * * * ** **
5159924 TTTTTATTTTTTGACTCGT-AGTTTAATCTCGATCATTTTCATTTTTTAACCCATAATTTAATTT
1 TTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
*
5159988 CGATCA
65 CTATCA
*** * ** * * * * * *
5159994 TTTTTCATTCACTGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTT
1 -TTTTCATTTTTTGAC-TCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTA--A
* *
5160058 TCAGTA--G
62 TCACTATCA
*** * * * *
5160065 TTTTCATTTTTTGACAT-GTGATTTAATATTGATCATTTTCATTTCTCTGACTCATGATTTAATG
1 TTTTCATTTTTTGAC-TCGTGATTTAATCCCGATCGTTTTCATTT-TTTGACTCATGGTTTAATC
**
5160129 ACGGT-TGT
64 AC--TATCA
* * * *
5160137 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATC-C
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
5160201 TGATCA
66 T-ATCA
* * * * ** * * *
5160207 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATCCC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
**
5160272 GGTCA
66 TATCA
* * * * * * *
5160277 TTTTCATTTTTCTTATTCATGATTTAATCCTCG-TTGTTTTCATTTTCTCACTCATGATTTAAT-
1 TTTTCATTTTT-TGACTCGTGATTTAATCC-CGATCGTTTTCATTTTTTGACTCATGGTTTAATC
* **
5160340 --TTTGGT
64 ACTAT-CA
** * * * * * * **
5160346 TGTTTCATTATCTAAGACAC-AG-TCTAATCCC-ATTCATTTTCATTTTTTGACTCGTGATTTTT
1 T-TTTCATT-T-TTTGACTCGTGATTTAATCCCGA-TCGTTTTCATTTTTTGACTCATGGTTTAA
*
5160408 TCTC-AGTCA
62 TCACTA-TCA
* * * * * * * * *
5160417 ATTTCATTTTCTAACTCAT-AGTTTAATCTCGATCATTTTCATTTTCTGGCCCATGGTTTAATC-
1 TTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
5160480 CTGATCA
65 CT-ATCA
* * * * * * * **
5160487 TTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTCAATTTTTGACTTGTGGTTTAATC
1 --TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATC
****
5160552 TGGCTCA
64 ACTATCA
* * * ** ** **
5160559 TTTTCATTTTCTAACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCA-
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
5160623 TAGTCA
66 TA-TCA
* ** ** * * *
5160629 TTTTCATTTTTTGACTCGTGGTCCAATCATGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCG-TTTTCATTTTTTGACTCATGGTTTAATCA
5160694 CTATCA
65 CTATCA
* * * *
5160700 TTTTTCTTTTTTTGA-T-GGGTAGTTTAATCCCGATCGTTTTCATTTTCTGACTTATGGTTTAAT
1 -TTTTCATTTTTTGACTCGTG-A-TTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAAT
**** **
5160763 CTGGGTTG
63 CACTATCA
* * * * * *
5160771 TTTTTATTTTTTGACTCATGGTTTAATCCCCATCGTTTTCATTTTTTGACTCACGGTTTAATCGC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
*
5160836 -GTCA
66 TATCA
* ** * * *
5160840 TTTTCATTTTTTTTGACTTGTGATTTAATCTTGGTCGTTCTTCATTTTTTGACTCGTGTTTTAAT
1 TTTTCA--TTTTTTGACTCGTGATTTAATCCCGATCGTT-TTCATTTTTTGACTCATGGTTTAAT
*
5160905 CACTATCG
63 CACTATCA
* * * ** * *
5160913 TTTTCATTTCTTAACTCGTGATTTGAA-CCTGATCGCATTAATTTTCTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGATTT-AATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAAT--
*
5160977 CAATCATTTTTCA
63 C-A-C---TATCA
* * *
5160990 TTTTCATTTTTTGA-TCGTTTTCATTTTCTAA-CCCGTAGCTTAATGCTAGTCATTTTCATTTTC
1 TTTTCATTTTTTGACTCG---TGA--TT-TAATCCCG-ATCGT--T--T--TCATTT-----TT-
* *
5161053 TGACTCATGGTTTAGTC-CTGTTCA
47 TGACTCATGGTTTAATCACT-ATCA
* * * * * * * *
5161077 TTTT--TTTTTTGACTGGTGGTTCAATCACGATCATTTCCATTTTTTGACTCATTGTTTAATC-T
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
*
5161139 TAGTCG
66 TA-TCA
* * * * * * * * *
5161145 TTTCCATTTTCTGGCTTGTGCTTTAAT--CTAT-GTCATTT--TTTTTTAACTCAAT-GCTCAAT
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGT--TTTCATTTTTTGACTC-ATGGTTTAAT
**
5161204 CAC-ACTTG
63 CACTA-TCA
* * * * * * * **
5161212 TTTTCATTTTCTGACTCATGGTTTAATCCATG-TTGTTTTTCATTTTTTAACTCGTACTTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCC-CGATCG-TTTTCATTTTTTGACTCATGGTTTAATC
* *
5161276 GC-AGTTA
64 ACTA-TCA
* * * * * * * * * * * *
5161283 TTTTCATTTCTTGACTCATGATTCAA-ACTGGTCATATTCATTTTCTAACTCGTGGTTTAGTC-C
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
5161346 TGATCA
66 T-ATCA
* *
5161352 --TT--TTTTTT---TC---ATTT--T-TCGATCATTTTCATTTTTTGACTCATGGTTTAATC-C
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
*
5161403 TTATCG
66 -TATCA
* * * * * * *
5161409 TTTTCATTTTTTGACTAGTGATTTAATCCTGGTCACTTGTT-A-TTTCTGACTCGTGATTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATC-GTT-TTCATTTTTTGACTCATGGTTTAATC
* *
5161472 -TTAATCG
64 ACT-ATCA
* * * * * * * * * *
5161479 TTGTCATTTCTTGACTCATGATTTAAT-CCGATTGTTTTCATTTCTTAACTCGTGATTTAAGCCC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
* *
5161543 GAT-T
66 TATCA
* * * * * * * *
5161547 TTATTCA-TTTTTGACTTGTGGTCTAATCCTGGTCGTTTTCA-TTTTTGACTAATGGTTTCATCT
1 TT-TTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
*
5161610 C-AGTCG
65 CTA-TCA
* ** * * * * * *
5161616 TTTTCATTTTTTGACTCGTAATTTAATCTTGATCTTTTTTATTTTCTAACTCGTAGTTTAAT-AC
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
**
5161680 GGGTCA
66 -TATCA
** * * * * * * * **
5161686 TTTTCATTTTTTGACTC-ACAGTTTATTCCTGGTCATTTTCATTTTTTAACTTATGATTTAATTT
1 TTTTCATTTTTTGACTCGTGA-TTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
*
5161750 CGATCA
65 CTATCA
* * * ** * * * * * *
5161756 TTTTTCATTCTCTGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTTCGACTCATGATTTACTC
1 -TTTTCATTTTTTGAC-TCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATC
*
5161820 TC-AGT-A
64 ACTA-TCA
** * * *** *
5161826 GTTTTCATTTTTTGAACAT-GTGATTTAATATCGATCATTTT-GTTTCTCCAACTCATGATTTAA
1 -TTTTCATTTTTTG-AC-TCGTGATTTAATCCCGATCGTTTTCATTT-TTTGACTCATGGTTTAA
* ** **
5161889 TGACGGCTGT
62 TCAC-TATCA
* * * * *
5161899 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATC-T
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
5161963 TGATCA
66 T-ATCA
* * * * ** * **
5161969 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTTTGACTCATGATTTAAT-TT
1 TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
* *
5162033 TGGTCT
66 T-ATCA
* *** * *
5162039 TTTTCATTTTTTGACTTACG-G-TTTAATTCCC-ATTGCTTTT-ATTCCCTGACTAATGATTTAA
1 TTTTCATTTTTTGAC-T-CGTGATTTAA-TCCCGATCG-TTTTCATTTTTTGACTCATGGTTTAA
5162100 TC-CTAGTCA
62 TCACTA-TCA
* * * *
5162109 TTTTCATTTTTCGGATTCGTGATTTAATCCTTG-TTGTTTTCATTTTTTGACTC
1 TTTTCATTTTT-TGACTCGTGATTTAATCC-CGATCGTTTTCATTTTTTGACTC
5162162 GTCATTTAAT
Statistics
Matches: 1899, Mismatches: 519, Indels: 338
0.69 0.19 0.12
Matches are distributed among these distances:
57 31 0.02
58 1 0.00
59 5 0.00
61 6 0.00
62 2 0.00
64 1 0.00
65 5 0.00
67 51 0.03
68 77 0.04
69 214 0.11
70 803 0.42
71 432 0.23
72 168 0.09
73 11 0.01
74 6 0.00
76 4 0.00
77 15 0.01
78 1 0.00
79 2 0.00
80 5 0.00
81 12 0.01
82 3 0.00
83 1 0.00
85 8 0.00
86 4 0.00
87 8 0.00
88 5 0.00
89 1 0.00
92 1 0.00
93 1 0.00
94 15 0.01
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (70 bp):
TTTTCATTTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
TATCA
Found at i:5161248 original size:35 final size:35
Alignment explanation
Indices: 5161209--5161302 Score: 93
Period size: 36 Copynumber: 2.7 Consensus size: 35
5161199 TCAATCACAC
*
5161209 TTGTTTTCATTTTCTGACTCATGGTTTAATC-CATG
1 TTGTTTTCATTTTCTGACTCATGCTTTAATCGCA-G
* * * *
5161244 TTGTTTTTCATTTTTTAACTCGTACTTTAATCGCAG
1 TTG-TTTTCATTTTCTGACTCATGCTTTAATCGCAG
*
5161280 TTATTTTCA-TTTCTTGACTCATG
1 TTGTTTTCATTTTC-TGACTCATG
5161303 ATTCAAACTG
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
34 3 0.07
35 15 0.33
36 26 0.57
37 2 0.04
ACGTcount: A:0.18, C:0.17, G:0.12, T:0.53
Consensus pattern (35 bp):
TTGTTTTCATTTTCTGACTCATGCTTTAATCGCAG
Found at i:5161420 original size:35 final size:35
Alignment explanation
Indices: 5161369--5162171 Score: 295
Period size: 35 Copynumber: 22.9 Consensus size: 35
5161359 TTCATTTTTC
* *
5161369 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
*
5161404 TATCGTTTTCATTTTTTGACT-AGTGATTTAATCCT
1 GATCGTTTTCATTTTTTGACTCA-TGATTTAATCCT
* * * * *
5161439 GGTCACTTGTT-A-TTTCTGACTCGTGATTTAATCTT
1 GATC-GTT-TTCATTTTTTGACTCATGATTTAATCCT
* * *
5161474 AATCGTTGTCATTTCTTGACTCATGATTTAATCC-
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5161508 GATTGTTTTCATTTCTTAACTCGTGATTTAAGCCC
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* ** * *
5161543 GAT-TTTATTCA-TTTTTGACTTGTGGTCTAATCCT
1 GATCGTT-TTCATTTTTTGACTCATGATTTAATCCT
* * * *
5161577 GGTCGTTTTCA-TTTTTGACTAATGGTTTCAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5161610 CAGTCGTTTTCATTTTTTGACTCGTAATTTAATCTT
1 GA-TCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * * *
5161646 GATCTTTTTTATTTTCTAACTCGT-AGTTTAATACG
1 GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * * *
5161681 GGTCATTTTCATTTTTTGACTCA-CAGTTTATTCCT
1 GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCT
* * * * *
5161716 GGTCATTTTCATTTTTTAACTTATGATTTAAT-TT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * * *
5161750 CGATCATTTTTCATTCTCTGACAT-GTGATTTAGT-TT
1 -GATC-GTTTTCATTTTTTGAC-TCATGATTTAATCCT
* * * * *
5161786 CGGTGGTTTTGATTTTTCGACTCATGATTTACT-CT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5161821 CAGTAGTTTTCATTTTTTGAACAT-GTGATTTAAT-AT
1 GA-TCGTTTTCATTTTTTG-AC-TCATGATTTAATCCT
* * *** * *
5161857 CGATCATTTT-GTTTCTCCAACTCATGATTTAATGACG
1 -GATCGTTTTCATTT-TTTGACTCATGATTTAAT-CCT
* * **
5161894 GCT-GTTTTTCATTTTCTGACTTGTGATTTAAT-CT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* * *
5161928 CGATCGTTTTCATTTTTTGACTCACGGTTTAATCTT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * *
5161964 GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * ** **
5161998 CGGTTGTTTTTGTTTTTTGACTCATGATTTAATTTT
1 -GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
* * * * *
5162034 GGTCTTTTTCATTTTTTGACTTACGGTTTAATTCC-
1 GATCGTTTTCATTTTTTGACTCATGATTTAA-TCCT
* * *** *
5162069 CATTGCTTTT-ATTCCCTGACTAATGATTTAATCCT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCT
* * * *
5162104 -AGTCATTTTCATTTTTCGGATTCGTGATTTAATCCTT
1 GA-TCGTTTTCATTTTT-TGACTCATGATTTAATCC-T
* * *
5162141 G-TTGTTTTCATTTTTTGACTCGTCATTTAAT
1 GATCGTTTTCATTTTTTGACTCATGATTTAAT
5162172 TTTAGTTGTT
Statistics
Matches: 564, Mismatches: 162, Indels: 84
0.70 0.20 0.10
Matches are distributed among these distances:
33 3 0.01
34 95 0.17
35 355 0.63
36 102 0.18
37 9 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (35 bp):
GATCGTTTTCATTTTTTGACTCATGATTTAATCCT
Found at i:5162180 original size:35 final size:36
Alignment explanation
Indices: 5162094--5162187 Score: 102
Period size: 35 Copynumber: 2.6 Consensus size: 36
5162084 CTGACTAATG
* ** * *
5162094 ATTTAATCCTAGTCATTTTCATTTTTCGGATTCGTG
1 ATTTAATCCTTGTTGTTTTCATTTTTCGGACTCGTC
*
5162130 ATTTAATCCTTGTTGTTTTCATTTTT-TGACTCGTC
1 ATTTAATCCTTGTTGTTTTCATTTTTCGGACTCGTC
*
5162165 ATTTAAT-TTTAGTTGTTTTCATT
1 ATTTAATCCTT-GTTGTTTTCATT
5162188 ATCTAAGACA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 2 0.04
35 25 0.50
36 23 0.46
ACGTcount: A:0.18, C:0.14, G:0.12, T:0.56
Consensus pattern (36 bp):
ATTTAATCCTTGTTGTTTTCATTTTTCGGACTCGTC
Found at i:5162246 original size:20 final size:20
Alignment explanation
Indices: 5162221--5162261 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
5162211 CTCATTTTCA
*
5162221 TTTTCTGACTTATGATTTTT
1 TTTTCTGACTCATGATTTTT
*
5162241 TTTTCTGACTCATGGTTTTT
1 TTTTCTGACTCATGATTTTT
5162261 T
1 T
5162262 CTCAGTCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.63
Consensus pattern (20 bp):
TTTTCTGACTCATGATTTTT
Found at i:5162281 original size:35 final size:35
Alignment explanation
Indices: 5162241--5162905 Score: 159
Period size: 35 Copynumber: 18.9 Consensus size: 35
5162231 TATGATTTTT
**
5162241 TTTTCTGACTCATGGTTTTTTCTC-AGTCATTTTAA
1 TTTTCTGACTCATGGTTTAATCTCGA-TCATTTTAA
* * *
5162276 TTTTCTTACTCATAGTTTAATCTCGATCATTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * **
5162311 TTTTCTGACCCATGGTTTAATC-CTGATCGTTTTTCT
1 TTTTCTGACTCATGGTTTAATCTC-GATC-ATTTTAA
* ** * *
5162347 TTTTTTGACTGGTGGTTTAATC-CTAGT-AGTTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGA-TCA-TTTTAA
* ** * * *
5162382 TTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * ** * *
5162417 TTTTTTGACTCATGGCTTAATCAGGATTATTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * * **
5162452 TTTTTTGACTCATGGTTTAATC-CTTATTATTTTTC
1 TTTTCTGACTCATGGTTTAATCTC-GATCATTTTAA
* * * ** * * * * *
5162487 TTTTTTTAATGGGTAGTTTAATCCCAATCGTTTTCA
1 TTTTCTGACT-CATGGTTTAATCTCGATCATTTTAA
* ** * * * *
5162523 TTTTCTTACTTGTGGTTGAATC-CTGGTCGTTTTCA
1 TTTTCTGACTCATGGTTTAATCTC-GATCATTTTAA
* * * * * ** *
5162558 TTTTTTGATTCGTGATTTAATCCTTG-TTGTTTTCA
1 TTTTCTGACTCATGGTTTAAT-CTCGATCATTTTAA
* * * * *
5162593 TTTTCTAACTCGTGATTTAATCTC-AGTCATTGTCA
1 TTTTCTGACTCATGGTTTAATCTCGA-TCATTTTAA
* * * ** *
5162628 -TTTCTTGACTCATGATTTAATCCCGTTTGTTTTCA
1 TTTTC-TGACTCATGGTTTAATCTCGATCATTTTAA
* * * ** * *
5162663 -TTTCTTAACTCGTGATTTAAATCT-GATTGTATTGA
1 TTTTC-TGACTCATGGTTT-AATCTCGATCATTTTAA
* * * * * * * *
5162698 TTTTTTCACTCGTTGTTCAATC-CTGGTCGTTTTTA
1 TTTTCTGACTCATGGTTTAATCTC-GATCATTTTAA
* * * *
5162733 TTTTTTGACTCATGATTTCATCTCGATCATTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * **
5162768 TTTTCTGACTCACGGTTTAATCTCGATCTTTTTGG
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * * * **
5162803 TTTTCTAACTCGTAGTTTAATAT-GAGTCATTTTCT
1 TTTTCTGACTCATGGTTTAATCTCGA-TCATTTTAA
* ** *
5162838 TTTTTTGACTCACAGTTTAATCTCGATCATTTTCA
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
* * * * *
5162873 TTTTTTAACTCATGATTTAATTTCGGTCATTTT
1 TTTTCTGACTCATGGTTTAATCTCGATCATTTT
5162906 TCATTCTCTG
Statistics
Matches: 484, Mismatches: 122, Indels: 48
0.74 0.19 0.07
Matches are distributed among these distances:
34 14 0.03
35 407 0.84
36 62 0.13
37 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (35 bp):
TTTTCTGACTCATGGTTTAATCTCGATCATTTTAA
Found at i:5162363 original size:106 final size:107
Alignment explanation
Indices: 5162239--5162475 Score: 245
Period size: 106 Copynumber: 2.2 Consensus size: 107
5162229 CTTATGATTT
* *
5162239 TTTTTTCTGACTCATGGTTT-TTTCTCAGTCA-TTTTAATTTTCTT-ACTCATAGTTTAATCTCG
1 TTTTTTCTGACTCATGGTTTAATCCT-AGT-AGTTTTAATTTT-TTGACTCATAGTTTAATCTCG
*
5162301 ATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTC
63 ATCATTTTCATTTTCTGACCCATGGCTTAATCCTGATCGTTTTTC
** * ** * * *
5162346 TTTTTT-TGACTGGTGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTC
1 TTTTTTCTGACTCATGGTTTAATCCTAGTAGTTTTAATTTTTTGACTCATAGTTTAATCTCGATC
* * **
5162410 ATTTTCATTTTTTGACTCATGGCTTAATCAGGAT--TATTTTC
66 ATTTTCATTTTCTGACCCATGGCTTAATCCTGATCGT-TTTTC
*
5162451 ATTTTT-TGACTCATGGTTTAATCCT
1 TTTTTTCTGACTCATGGTTTAATCCT
5162476 TATTATTTTT
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
104 1 0.01
105 30 0.28
106 68 0.63
107 9 0.08
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (107 bp):
TTTTTTCTGACTCATGGTTTAATCCTAGTAGTTTTAATTTTTTGACTCATAGTTTAATCTCGATC
ATTTTCATTTTCTGACCCATGGCTTAATCCTGATCGTTTTTC
Found at i:5162484 original size:70 final size:69
Alignment explanation
Indices: 5162269--5162893 Score: 255
Period size: 70 Copynumber: 8.9 Consensus size: 69
5162259 TTTCTCAGTC
* * * * *
5162269 ATTTTAATTTTCTT-ACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATC
1 ATTTTCATTTT-TTGACTCATGGTTTAATC-CGATTATTTTCATTTTTTGACTCATGGTTTAATC
5162333 CTGATCGT
64 CTGAT--T
* ** * * **
5162341 -TTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTGGTTTAAT-C
1 ATTTTCATTTTTTGACTCATGGTTTAATCCGATTA-TTTTCATTTTTTGACTCATGGTTTAATCC
* *
5162404 TGGCTC
65 T-GATT
* *
5162410 ATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-CGATTATTTTCATTTTTTGACTCATGGTTTAATCC
*
5162475 TTATT
65 TGATT
* * ** * * ** ** *
5162480 ATTTTTC-TTTTTTTAATGGGTAGTTTAATCCCAATCGTTTTCATTTTCTT-ACTTGTGGTTGAA
1 A-TTTTCATTTTTTGACT-CATGGTTTAAT-CCGATTATTTTCATTTT-TTGACTCATGGTTTAA
* *
5162543 TCCTGGTC
62 TCCTGATT
* * * * * * * * *
5162551 GTTTTCATTTTTTGATTCGTGATTTAATCCTTG-TTGTTTTCATTTTCTAACTCGTGATTTAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCC--GATTATTTTCATTTTTTGACTCATGGTTTAATC
* *
5162614 CTCAGTC
64 CTGA-TT
* * * * * * * * *
5162621 ATTGTCATTTCTTGACTCATGATTTAATCCCGTTTGTTTTCATTTCTTAACTCGTGATTTAAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAAT-CCGATTATTTTCATTTTTTGACTCATGGTTT-AATC
5162685 CTGATT
64 CTGATT
* * * * * * * * ** * * *
5162691 GTATTGATTTTTTCACTCGTTGTTCAATCCTGGTCGTTTTTATTTTTTGACTCATGATTTCAT-C
1 ATTTTCATTTTTTGACTCATGGTTTAATCC-GATTATTTTCATTTTTTGACTCATGGTTTAATCC
*
5162755 TCGATC
65 T-GATT
* * ** * * * *
5162761 ATTTTCATTTTCTGACTCACGGTTTAATCTCGATCT-TTTTGGTTTTCTAACTCGTAGTTTAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATC-CGAT-TATTTTCATTTTTTGACTCATGGTTTAATC
* *
5162824 ATGAGTC
64 CTGA-TT
* ** * * *
5162831 ATTTTCTTTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTTTAACTCATGATTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAATC-CGATTATTTTCATTTTTTGACTCATGGTTTAAT
5162894 TTCGGTCATT
Statistics
Matches: 416, Mismatches: 113, Indels: 50
0.72 0.20 0.09
Matches are distributed among these distances:
69 14 0.03
70 293 0.70
71 106 0.25
72 3 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (69 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCCGATTATTTTCATTTTTTGACTCATGGTTTAATCCT
GATT
Found at i:5162486 original size:106 final size:105
Alignment explanation
Indices: 5162290--5162630 Score: 269
Period size: 106 Copynumber: 3.2 Consensus size: 105
5162280 CTTACTCATA
* ** *
5162290 GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGA
1 GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGCTTAATCAGGATC-TTTTTCATTTTTTGA
**
5162355 CTGGTGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTG
65 CTCATGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTG
* * * *
5162396 GTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGAT-TATTTTCATTTTTTGA
1 GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGCTTAATCAGGATCT-TTTTCATTTTTTGA
* * * * * *
5162460 CTCATGGTTTAATCCTTATTATTTTTC-TTTTTTTAATGGGTA
65 CTCATGGTTTAATCC-TAGTAGTTTTCATTTTTTGACT-TGTG
* * * * *** * *
5162502 GTTTAATCCCAATCGTTTTCATTTTCTTACTTGTGG-TTGAATCCTGG-TCGTTTTCATTTTTTG
1 GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGCTT-AAT-CAGGATCTTTTTCATTTTTTG
* * * * * * * *
5162565 ATTCGTGATTTAATCCTTGTTGTTTTCATTTTCTAACTCGTG
64 ACTCATGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTG
* *
5162607 ATTTAATCTC-AGTCATTGTCATTT
1 GTTTAATCTCGA-TCATTTTCATTT
5162631 CTTGACTCAT
Statistics
Matches: 184, Mismatches: 43, Indels: 17
0.75 0.18 0.07
Matches are distributed among these distances:
104 2 0.01
105 63 0.34
106 116 0.63
107 3 0.02
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (105 bp):
GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGCTTAATCAGGATCTTTTTCATTTTTTGAC
TCATGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTG
Found at i:5162556 original size:141 final size:141
Alignment explanation
Indices: 5162267--5162565 Score: 372
Period size: 141 Copynumber: 2.1 Consensus size: 141
5162257 TTTTTCTCAG
* * * ** *
5162267 TCATTTTAATTTTCTT-ACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAA
1 TCATTTTCATTTT-TTGACTCATGGCTTAATCAGGATTATTTTCATTTTCTGACCCATGGTTTAA
* * * * *
5162331 TCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTAGTTTTCATTTTTTGACTTGTG
65 TCCTGATCATTTTTCTTTTTTTGAATGGTAGTTTAATCCCAATAGTTTTCATTTTTTGACTTGTG
*
5162396 GTTTAATCTGGC
130 GTTGAATCTGGC
* *
5162408 TCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTCTGACCCATGGTTTAAT
* * *
5162473 CCTTATTATTTTTCTTTTTTT-AATGGGTAGTTTAATCCCAATCGTTTTCATTTTCTT-ACTTGT
66 CCTGATCATTTTTCTTTTTTTGAAT-GGTAGTTTAATCCCAATAGTTTTCATTTT-TTGACTTGT
5162536 GGTTGAATCCTGG-
129 GGTTGAAT-CTGGC
*
5162549 TCGTTTTCATTTTTTGA
1 TCATTTTCATTTTTTGA
5162566 TTCGTGATTT
Statistics
Matches: 136, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
140 4 0.03
141 126 0.93
142 6 0.04
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (141 bp):
TCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTCTGACCCATGGTTTAAT
CCTGATCATTTTTCTTTTTTTGAATGGTAGTTTAATCCCAATAGTTTTCATTTTTTGACTTGTGG
TTGAATCTGGC
Found at i:5162591 original size:141 final size:141
Alignment explanation
Indices: 5162304--5162614 Score: 360
Period size: 141 Copynumber: 2.2 Consensus size: 141
5162294 AATCTCGATC
* * * *
5162304 ATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTCTTTTTTTGAATGGTAGTTTAATC
* * * *
5162369 CTAGTAGTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCT
66 CCAATAGTTTTCATTTTTTGACTTGTGGTTGAATCTGGCTCATTTTCATTTTTTGACTCATGACT
5162434 TAATCAGGATT
131 TAATCAGGATT
* * *
5162445 ATTTTCATTTTTTGACTCATGGTTTAATCCTTATTATTTTTCTTTTTTT-AATGGGTAGTTTAAT
1 ATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTCTTTTTTTGAAT-GGTAGTTTAAT
* * * *
5162509 CCCAATCGTTTTCATTTTCTT-ACTTGTGGTTGAATCCTGG-TCGTTTTCATTTTTTGATTCGTG
65 CCCAATAGTTTTCATTTT-TTGACTTGTGGTTGAAT-CTGGCTCATTTTCATTTTTTGACTCATG
* **
5162572 ATTTAATCCTTG-TT
128 ACTTAAT-CAGGATT
* * * *
5162586 GTTTTCATTTTCTAACTCGTGATTTAATC
1 ATTTTCATTTTCTGACTCATGGTTTAATC
5162615 TCAGTCATTG
Statistics
Matches: 143, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
140 2 0.01
141 133 0.93
142 8 0.06
ACGTcount: A:0.17, C:0.15, G:0.14, T:0.53
Consensus pattern (141 bp):
ATTTTCATTTTCTGACTCATGGTTTAATCCTGATCATTTTTCTTTTTTTGAATGGTAGTTTAATC
CCAATAGTTTTCATTTTTTGACTTGTGGTTGAATCTGGCTCATTTTCATTTTTTGACTCATGACT
TAATCAGGATT
Found at i:5162893 original size:105 final size:103
Alignment explanation
Indices: 5162552--5162893 Score: 298
Period size: 105 Copynumber: 3.3 Consensus size: 103
5162542 ATCCTGGTCG
* * * * *
5162552 TTTTCATTTTTTGATTCGTGATTTAATCCTTG-TTGTTTTCATTTTCTAACTCGTGATTTAATCT
1 TTTTCATTTTTTAACTCATGATTTAAT-C-TGATTGTATTGATTTTCTAACTCGTG-TTTAATCT
* * * * * * **
5162616 CAGTCATTGTCATTTCTTGACTCATGATTTAATCCCGTTTG
63 GAGTCATTTTCTTTTTTTGACTCATGATTTAATCTCGATCA
* * * * *
5162657 TTTTCATTTCTTAACTCGTGATTTAAATCTGATTGTATTGATTTTTTCACTCGTTGTTCAATCCT
1 TTTTCATTTTTTAACTCATGATTT-AATCTGATTGTATTGATTTTCTAACTCG-TGTTTAAT-CT
* *
5162722 G-GTCGTTTT-TATTTTTTGACTCATGATTTCATCTCGATCA
63 GAGTCATTTTCT-TTTTTTGACTCATGATTTAATCTCGATCA
* * * * * * *
5162762 TTTTCATTTTCTGACTCACGGTTTAATCTCGATCT-TTTTGGTTTTCTAACTCGTAGTTTAATAT
1 TTTTCATTTTTTAACTCATGATTTAATCT-GAT-TGTATTGATTTTCTAACTCGT-GTTTAATCT
*
5162826 GAGTCATTTTCTTTTTTTGACTCA-CAGTTTAATCTCGATCA
63 GAGTCATTTTCTTTTTTTGACTCATGA-TTTAATCTCGATCA
5162867 TTTTCATTTTTTAACTCATGATTTAAT
1 TTTTCATTTTTTAACTCATGATTTAAT
5162894 TTCGGTCATT
Statistics
Matches: 189, Mismatches: 37, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
104 11 0.06
105 169 0.89
106 9 0.05
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (103 bp):
TTTTCATTTTTTAACTCATGATTTAATCTGATTGTATTGATTTTCTAACTCGTGTTTAATCTGAG
TCATTTTCTTTTTTTGACTCATGATTTAATCTCGATCA
Found at i:5162902 original size:70 final size:70
Alignment explanation
Indices: 5162727--5162917 Score: 206
Period size: 70 Copynumber: 2.7 Consensus size: 70
5162717 ATCCTGGTCG
* * * * * *
5162727 TTTTTATTTTTTGACTCATGATTTCATCTCGATCATTTTCATTTTCTGACTCACGGTTTAATCTC
1 TTTTCATTTTTTAACTCATGATTTAATATCGGTCATTTTCATTTTCTGACTCACAGTTTAATCTC
*
5162792 GATCT
66 GATCA
** * * * *
5162797 TTTTGGTTTTCTAACTCGT-AGTTTAATAT-GAGTCATTTTCTTTTTTTGACTCACAGTTTAATC
1 TTTTCATTTTTTAACTCATGA-TTTAATATCG-GTCATTTTCATTTTCTGACTCACAGTTTAATC
5162860 TCGATCA
64 TCGATCA
* *
5162867 TTTTCATTTTTTAACTCATGATTTAATTTCGGTCATTTTTCATTCTCTGAC
1 TTTTCATTTTTTAACTCATGATTTAATATCGGTCA-TTTTCATTTTCTGAC
5162918 ATGTGATTTA
Statistics
Matches: 96, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
69 2 0.02
70 80 0.83
71 14 0.15
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.52
Consensus pattern (70 bp):
TTTTCATTTTTTAACTCATGATTTAATATCGGTCATTTTCATTTTCTGACTCACAGTTTAATCTC
GATCA
Found at i:5162960 original size:35 final size:36
Alignment explanation
Indices: 5162853--5163051 Score: 99
Period size: 35 Copynumber: 5.6 Consensus size: 36
5162843 TGACTCACAG
* * * * *
5162853 TTTAATCTCGATCA-TTTTCATTTTTTAACTCATGA
1 TTTAATTTCGGTCAGTTTTCATTCTCTGACTCATGA
* *
5162888 TTTAATTTCGGTCATTTTTCATTCTCTGACAT-GTGA
1 TTTAATTTCGGTCAGTTTTCATTCTCTGAC-TCATGA
* * * *
5162924 TTTAGTTTCGGT-GGTTTTGATTTTCTGACTCATGA
1 TTTAATTTCGGTCAGTTTTCATTCTCTGACTCATGA
** * * *
5162959 TTT-ATTCTTAGT-AGTTTTCATTTTTTGACAT-GTGA
1 TTTAATT-TCGGTCAGTTTTCATTCTCTGAC-TCATGA
* * * * *
5162994 TTTAGTATCGATCA-TTTTCGTTTCTCCGACTCATGA
1 TTTAATTTCGGTCAGTTTTC-ATTCTCTGACTCATGA
* *
5163030 TTTAATCTCGAT-AGTTTTCATT
1 TTTAATTTCGGTCAGTTTTCATT
5163052 TTTTGATTCA
Statistics
Matches: 122, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
34 3 0.02
35 65 0.53
36 53 0.43
37 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (36 bp):
TTTAATTTCGGTCAGTTTTCATTCTCTGACTCATGA
Found at i:5163052 original size:71 final size:70
Alignment explanation
Indices: 5162860--5163057 Score: 202
Period size: 71 Copynumber: 2.8 Consensus size: 70
5162850 CAGTTTAATC
* *** * * * * *
5162860 TCGATCATTTTCATTTTTTAACTCATGATTTAATTTCGGTCATTTTTCATTCTCTGACATGTGAT
1 TCGATCATTTTGATTTTCCGACTCATGATTTAATCTCGAT-AGTTTTCATTTTTTGACATGTGAT
*
5162925 TTAGTT
65 TTAGTA
* ** * * *
5162931 TCGGTGGTTTTGATTTTCTGACTCATGATTTATTCT-TAGTAGTTTTCATTTTTTGACATGTGAT
1 TCGATCATTTTGATTTTCCGACTCATGATTTAATCTCGA-TAGTTTTCATTTTTTGACATGTGAT
5162995 TTAGTA
65 TTAGTA
5163001 TCGATCATTTTCG-TTTCTCCGACTCATGATTTAATCTCGATAGTTTTCATTTTTTGA
1 TCGATCATTTT-GATTT-TCCGACTCATGATTTAATCTCGATAGTTTTCATTTTTTGA
5163058 TTCATGGTTT
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
70 37 0.36
71 65 0.63
72 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.52
Consensus pattern (70 bp):
TCGATCATTTTGATTTTCCGACTCATGATTTAATCTCGATAGTTTTCATTTTTTGACATGTGATT
TAGTA
Found at i:5163246 original size:35 final size:36
Alignment explanation
Indices: 5163162--5163246 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
5163152 TTATTCCCTA
* * *
5163162 ACTCCTGATTTAATCCTAGTCATTTTCATTTTTTTG
1 ACTCGTGATTTAATCCTAGTCATTCTCATTTTTCTG
* * **
5163198 ATTCGTGATTTAATCCTTGTTGTTCTCA-TTTTCTG
1 ACTCGTGATTTAATCCTAGTCATTCTCATTTTTCTG
5163233 ACTCGTGATTTAAT
1 ACTCGTGATTTAAT
5163247 TTTGATTGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 19 0.46
36 22 0.54
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.52
Consensus pattern (36 bp):
ACTCGTGATTTAATCCTAGTCATTCTCATTTTTCTG
Found at i:5163262 original size:35 final size:35
Alignment explanation
Indices: 5163162--5163262 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 35
5163152 TTATTCCCTA
* * ** *
5163162 ACTCCTGATTTAATCCTAGTCATTTTCATTTTTTTG
1 ACTCGTGATTTAATCCTTGTTGTTTTCA-TTTTCTG
* *
5163198 ATTCGTGATTTAATCCTTGTTGTTCTCATTTTCTG
1 ACTCGTGATTTAATCCTTGTTGTTTTCATTTTCTG
*
5163233 ACTCGTGATTTAAT-TTTGATTGTTTTCATT
1 ACTCGTGATTTAATCCTTG-TTGTTTTCATT
5163263 ATCTAAGACA
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
34 3 0.06
35 29 0.54
36 22 0.41
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (35 bp):
ACTCGTGATTTAATCCTTGTTGTTTTCATTTTCTG
Found at i:5163315 original size:21 final size:21
Alignment explanation
Indices: 5163289--5163335 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
5163279 AATCCCTCTC
*
5163289 ATTTTCATTTTTTGACTTATG
1 ATTTTCATTTTTTGACTCATG
5163310 ATTTTCATTTTTTGACTCATG
1 ATTTTCATTTTTTGACTCATG
*
5163331 GTTTT
1 ATTTT
5163336 TTCTCGGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.62
Consensus pattern (21 bp):
ATTTTCATTTTTTGACTCATG
Found at i:5163405 original size:35 final size:35
Alignment explanation
Indices: 5163310--5164162 Score: 346
Period size: 35 Copynumber: 24.8 Consensus size: 35
5163300 TTGACTTATG
** *
5163310 ATTTTCATTTTTTGACTCATGGTTTTTTCTCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5163345 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5163380 ATTTTCATTTTCTGACCCATGGTTTAATC-CTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
** *
5163415 ATTTTTC-TCTTTTTGACTGGTGGTTTAATC-CTAGT-
1 A-TTTTCAT-TTTTTGACTCATGGTTTAATCTCGA-TC
* *
5163450 -TGTTTCATTTTTTGACTTC-TGGTTTAATCTGGCTC
1 AT-TTTCATTTTTTGAC-TCATGGTTTAATCTCGATC
* * ** *
5163485 ATTTTCATTTTCTGACTCATGGCTTAATCAGGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5163520 ATTTTCATTTTTTGTCTCACGGTTTAACCATAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
5163555 ATTTTCATTTTTTGACTCGCATGG-------TCG-T-
1 ATTTTCATTTTTTGACT--CATGGTTTAATCTCGATC
* * *
5163583 -TTTTCATTTTTTGACTCATGGTTTAATCCCTACC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * * * *
5163617 ATTTTTCTTTTTTTTGA-TGGGTAGTTTAATCCCAACC
1 A-TTTTC-ATTTTTTGACT-CATGGTTTAATCTCGATC
* * * ** *
5163654 GTGTTCATTTTTTAACTTGTGGTTTAATC-CTAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * ** * * *
5163689 GTTTTCATTTTCTGACTTGTGGTTTAATCTGGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5163724 GTTTTCATTTTTTGACTCATTGTTTAATC-CCATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5163758 GTTTTCATTTTTTGACTCACGGTTTAATCGCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* **
5163793 ATTTTTAGTTTTTTGACTTGTGGTTTAATCTC-AGTC
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGA-TC
* * *
5163829 GTTCTTCATTTTTTGACTCATGTTTTAATCACGATC
1 ATT-TTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5163865 GTTTTCATTTCTTGACTCCTGATTTGAA-CCCGATC
1 ATTTTCATTTTTTGACTCATGGTTT-AATCTCGATC
*** * * * * *
5163900 GCATTCATTTTTTGATTCATAGTTTAAACCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5163935 ATTTT--TCTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * ** * *
5163959 GTTTTCATTTTCTAACTCAAAGCTTAAT-TCCAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* ** *
5163994 ATTTTCATTTTTTTACTGGTGGTTTAATCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5164029 ATTTCCATTTTTTGACTCGTGGTTCAATCTTAGTTGC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGAT-C
* * * * *
5164066 --TTCCATTTTCT-AGCTCATGCTTTAATCTAGGTC
1 ATTTTCATTTTTTGA-CTCATGGTTTAATCTCGATC
* *
5164099 ATTTTC-TTTTTCTGACTCAAT-GTTTAATC-CCACTT
1 ATTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA-TC
* * *
5164134 ATTTTCGTTTTCTAACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATC
5164163 CATGTTGTTT
Statistics
Matches: 622, Mismatches: 136, Indels: 120
0.71 0.15 0.14
Matches are distributed among these distances:
24 7 0.01
25 5 0.01
26 4 0.01
27 16 0.03
28 3 0.00
29 6 0.01
30 4 0.01
31 2 0.00
32 1 0.00
33 9 0.01
34 70 0.11
35 365 0.59
36 99 0.16
37 31 0.05
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5163810 original size:36 final size:34
Alignment explanation
Indices: 5163725--5163882 Score: 127
Period size: 36 Copynumber: 4.5 Consensus size: 34
5163715 ATCTGGGTTG
** *
5163725 TTTTCATTTTTTGACTCATTGTTTAATCCCATCG
1 TTTTCATTTTTTGACTCACGGTTTAATCCCATCA
**
5163759 TTTTCATTTTTTGACTCACGGTTTAATCGCGGTCA
1 TTTTCATTTTTTGACTCACGGTTTAATC-CCATCA
* *** * *
5163794 TTTTTAGTTTTTTGACTTGTGGTTTAATCTCAGTCG
1 TTTTCA-TTTTTTGACTCACGGTTTAATCCCA-TCA
* * * *
5163830 TTCTTCATTTTTTGACTCATGTTTTAATCACGATCG
1 TT-TTCATTTTTTGACTCACGGTTTAATC-CCATCA
*
5163866 TTTTCATTTCTTGACTC
1 TTTTCATTTTTTGACTC
5163883 CTGATTTGAA
Statistics
Matches: 99, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
34 26 0.26
35 22 0.22
36 47 0.47
37 4 0.04
ACGTcount: A:0.16, C:0.18, G:0.13, T:0.52
Consensus pattern (34 bp):
TTTTCATTTTTTGACTCACGGTTTAATCCCATCA
Found at i:5164619 original size:105 final size:105
Alignment explanation
Indices: 5164483--5164672 Score: 229
Period size: 105 Copynumber: 1.8 Consensus size: 105
5164473 TTTTTATTTC
* * * **
5164483 TGACTCGTGATTTAATCTCAGTCGTTGTCATTTCTTGACTCATGATTTAATCTCGATTTTTTTCA
1 TGACTCATGATTTAATCTCAGTCGTTGTCATTTCTTAACTCAAGATTTAATCTCGATCGTTTTCA
*
5164548 TTTCTTAACTCGTGTTTTAAACCCGATTGTATTCATTTTT
66 TTTCTTAACTCGTGGTTTAAACCCGATTGTATTCATTTTT
* * * * * * *
5164588 TGACTCATGATTTAATC-CTGGTTGTTTTCATTTTTTAACTCAAGGTTTCATCTCGGTCGTTTTC
1 TGACTCATGATTTAATCTC-AGTCGTTGTCATTTCTTAACTCAAGATTTAATCTCGATCGTTTTC
* *
5164652 ATTTTTTGACTCGTGGTTTAA
65 ATTTCTTAACTCGTGGTTTAA
5164673 TCTCGATCTT
Statistics
Matches: 69, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
104 1 0.01
105 68 0.99
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (105 bp):
TGACTCATGATTTAATCTCAGTCGTTGTCATTTCTTAACTCAAGATTTAATCTCGATCGTTTTCA
TTTCTTAACTCGTGGTTTAAACCCGATTGTATTCATTTTT
Found at i:5164691 original size:105 final size:105
Alignment explanation
Indices: 5164528--5164778 Score: 240
Period size: 105 Copynumber: 2.4 Consensus size: 105
5164518 TGACTCATGA
** * * * * *
5164528 TTTAATCTCGATTTTTTTCATTTCTTAACTCGTGTTTTAAACCCGATTGTATTCATTTTTTGACT
1 TTTAATCTCGATCATTTTCATTTTTTAACTCGTGATTTAATCCCGATTGTATTCATTTTCTAACT
* * **
5164593 CATG-A-TTTAATCCTGGTTGTTTTCATTTTTTAACTC-AAGG
66 --TGTAGTTTAATACGGGTCATTTTCATTTTTTAACTCGAA-G
* * * * * * * *
5164633 TTTCATCTCGGTCGTTTTCATTTTTTGACTCGTGGTTTAATCTCGATCT-TTTTTATTTTCTAAC
1 TTTAATCTCGATCATTTTCATTTTTTAACTCGTGATTTAATCCCGAT-TGTATTCATTTTCTAAC
*
5164697 TTGTAGTTTAATACGGGTCATTTTCATTTTTTAACTCGCAG
65 TTGTAGTTTAATACGGGTCATTTTCATTTTTTAACTCGAAG
* *
5164738 TTTAATCTCGATCATTTTTATTTTTTAACCCGTGATTTAAT
1 TTTAATCTCGATCATTTTCATTTTTTAACTCGTGATTTAAT
5164779 TTTGGTCATT
Statistics
Matches: 117, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
103 2 0.02
104 1 0.01
105 112 0.96
106 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (105 bp):
TTTAATCTCGATCATTTTCATTTTTTAACTCGTGATTTAATCCCGATTGTATTCATTTTCTAACT
TGTAGTTTAATACGGGTCATTTTCATTTTTTAACTCGAAG
Found at i:5164777 original size:35 final size:36
Alignment explanation
Indices: 5164289--5164778 Score: 207
Period size: 35 Copynumber: 14.0 Consensus size: 36
5164279 TTTTAATTTT
* * * *
5164289 TCGATCGTTTTCATTTTCTGACTCGTG-GCTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* * * *
5164324 CCAATCATTTTCATTTTCTAACTC--AATGTTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGA-GTTTAATC
* * * *
5164359 TCGATCGTTTTCCTTTTTCTAGCTAGTG-GTTTAATC
1 TCGATCATTTTCATTTTT-TAACTCGTGAGTTTAATC
* * * *
5164395 TCGGTCATTTTCATTTTCTGACTCATG-GTTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* * * *
5164430 -CTTATTGC-TTTT-AATTTTTGACTAGTGA-TTTAATC
1 TC-GA-T-CATTTTCATTTTTTAACTCGTGAGTTTAATC
* * * *
5164465 -CTGGTCACTTTTTA-TTTCTGACTCGTGA-TTTAATC
1 TC-GATCA-TTTTCATTTTTTAACTCGTGAGTTTAATC
* * * * *
5164500 TC-AGTCGTTGTCATTTCTTGACTCATGA-TTTAATC
1 TCGA-TCATTTTCATTTTTTAACTCGTGAGTTTAATC
** * * *
5164535 TCGATTTTTTTCATTTCTTAACTCGTG-TTTTAAAC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* ** * * *
5164570 CCGATTGTATTCATTTTTTGACTCATGA-TTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* ** ** *
5164605 -CTGGTTGTTTTCATTTTTTAACTCAAG-GTTTCATC
1 TC-GATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* * *
5164640 TCGGTCGTTTTCATTTTTTGACTCGTG-GTTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* * * *
5164675 TCGATCTTTTTTATTTTCTAACTTGT-AGTTTAATAC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAAT-C
* * *
5164711 -GGGTCATTTTCATTTTTTAACTCG-CAGTTTAATC
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
* *
5164745 TCGATCATTTTTATTTTTTAACCCGTGA-TTTAAT
1 TCGATCATTTTCATTTTTTAACTCGTGAGTTTAAT
5164779 TTTGGTCATT
Statistics
Matches: 350, Mismatches: 79, Indels: 52
0.73 0.16 0.11
Matches are distributed among these distances:
33 1 0.00
34 8 0.02
35 303 0.87
36 37 0.11
37 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (36 bp):
TCGATCATTTTCATTTTTTAACTCGTGAGTTTAATC
Found at i:5164943 original size:36 final size:35
Alignment explanation
Indices: 5164893--5164974 Score: 101
Period size: 36 Copynumber: 2.3 Consensus size: 35
5164883 ATATTGATAA
* *
5164893 TTTTCATTTCTCCGACTCATGATTTAATGACGATTG
1 TTTTCATTT-TCCGACTCATGATGTAATCACGATTG
** *
5164929 TTTTTCATTTTCCGACTTGTGATGTAATCTCGATTG
1 -TTTTCATTTTCCGACTCATGATGTAATCACGATTG
5164965 TTTTCATTTT
1 TTTTCATTTT
5164975 TTGACTCACG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 10 0.25
36 21 0.52
37 9 0.22
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTCCGACTCATGATGTAATCACGATTG
Found at i:5165543 original size:36 final size:36
Alignment explanation
Indices: 5165416--5165655 Score: 170
Period size: 35 Copynumber: 6.8 Consensus size: 36
5165406 TTAATCCTCA
* * *
5165416 TTTTCATTTTTTGACTCATGGCTTAATCATGATTA-
1 TTTTCATTTTTTGACTCGTGGTTTAATCATGATCAT
* * *
5165451 TTTTCATTTTTTAACTCATGCTTTAATCAT-AGTCA-
1 TTTTCATTTTTTGACTCGTGGTTTAATCATGA-TCAT
* * *
5165486 TTTTCATTTTTTGACTAGTGGTCTAATCATGGTCAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCATGATCAT
* *
5165522 TTTTCATTTTTTGACTTGTGGTTTAATCCCT-ATCAT
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CATGATCAT
* * * * * *
5165558 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATC-G
1 TTTTCATTTTTTGACT-CGTGGTTTAATCATGATCAT
* * * * * *
5165593 TTTTCATTTTCTGACTTGTGGTTGAATCCTGGTCGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCATGATCAT
* * *
5165629 TTTT-ATTTTTTGATTCATGATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC
5165656 CTTATTGTTT
Statistics
Matches: 165, Mismatches: 32, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
34 1 0.01
35 103 0.62
36 59 0.36
37 2 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.53
Consensus pattern (36 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCATGATCAT
Found at i:5165549 original size:71 final size:71
Alignment explanation
Indices: 5165413--5165641 Score: 207
Period size: 71 Copynumber: 3.2 Consensus size: 71
5165403 GGATTAATCC
* * ** *
5165413 TCATTTTCATTTTTTGACTCA-TGG-CTTAATCATGATTATTTTCATTTTTTAACTCATGCTTTA
1 TCATTTTCATTTTTTGACTCAGTGGTC-TAATCATGATCATTTTCATTTTTTGACTTGTGGTTTA
*
5165476 ATCATAG
65 ATCCTAG
*
5165483 TCATTTTCATTTTTTGACT-AGTGGTCTAATCATGGTCATTTTTCATTTTTTGACTTGTGGTTTA
1 TCATTTTCATTTTTTGACTCAGTGGTCTAATCATGATCA-TTTTCATTTTTTGACTTGTGGTTTA
5165547 ATCCCTA-
65 AT-CCTAG
* ** * * * * * * *
5165554 TCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATCGTTTTCATTTTCTGACTTGTGGTTGA
1 TCA-TTTTCATTTTTTGACTCAGTGGTCTAATCATGATCATTTTCATTTTTTGACTTGTGGTTTA
*
5165618 ATCCTGG
65 ATCCTAG
* *
5165625 TCGTTTTTATTTTTTGA
1 TCATTTTCATTTTTTGA
5165642 TTCATGATTT
Statistics
Matches: 131, Mismatches: 21, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
69 1 0.01
70 47 0.36
71 55 0.42
72 28 0.21
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (71 bp):
TCATTTTCATTTTTTGACTCAGTGGTCTAATCATGATCATTTTCATTTTTTGACTTGTGGTTTAA
TCCTAG
Found at i:5165621 original size:35 final size:34
Alignment explanation
Indices: 5165416--5165689 Score: 156
Period size: 35 Copynumber: 7.8 Consensus size: 34
5165406 TTAATCCTCA
** * * **
5165416 TTTTCATTTTTTGACTCATGGCTTAATCATGATTA
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-ATCG
* ** * * *
5165451 TTTTCATTTTTTAACTCATGCTTTAATCATAGTCA
1 TTTTCATTTTTTGACTTGTGGTTTAATCCTA-TCG
* * * * *
5165486 TTTTCATTTTTTGACTAGTGGTCTAATCATGGTCAT
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-ATC-G
*
5165522 TTTTCATTTTTTGACTTGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTTGTGGTTTAAT-CCTATC-G
* * *
5165558 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATCG
1 TTTTCATTTTTTGACT-TGTGGTTTAATCCT-ATCG
* * *
5165593 TTTTCATTTTCTGACTTGTGGTTGAATCCTGGTCG
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-ATCG
* * * *
5165628 TTTTTATTTTTTGA-TTCATGATTTAATCCTTATTG
1 TTTTCATTTTTTGACTT-GTGGTTTAATCC-TATCG
* * *
5165663 TTTTTATTTTCTGACTTGTGATTTAAT
1 TTTTCATTTTTTGACTTGTGGTTTAAT
5165690 TTTGGTTTTT
Statistics
Matches: 194, Mismatches: 35, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
34 3 0.02
35 131 0.68
36 58 0.30
37 2 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (34 bp):
TTTTCATTTTTTGACTTGTGGTTTAATCCTATCG
Found at i:5165803 original size:35 final size:35
Alignment explanation
Indices: 5165779--5165861 Score: 123
Period size: 35 Copynumber: 2.4 Consensus size: 35
5165769 CGTGATTTTT
5165779 TCTCAATCATTTTCATTTTCTGACTCATAGTTTAA
1 TCTCAATCATTTTCATTTTCTGACTCATAGTTTAA
* * *
5165814 TCTCGATCATTTTCATTTTCTGACCCATGGTTTAA
1 TCTCAATCATTTTCATTTTCTGACTCATAGTTTAA
5165849 TCGT-AATCATTTT
1 TC-TCAATCATTTT
5165862 TCCTTTTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 42 0.98
36 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.08, T:0.48
Consensus pattern (35 bp):
TCTCAATCATTTTCATTTTCTGACTCATAGTTTAA
Found at i:5165881 original size:36 final size:35
Alignment explanation
Indices: 5165841--5165921 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
5165831 TTCTGACCCA
5165841 TGGTTTAATCGTAATCAT-TTTTCCTTTTTTGACTAG
1 TGGTTTAATCGTAAT--TGTTTTCCTTTTTTGACTAG
** * *
5165877 TGGTTTAATCGTGGTTGTTTTCTTTTTTTGACTTG
1 TGGTTTAATCGTAATTGTTTTCCTTTTTTGACTAG
5165912 TGGTTTAATC
1 TGGTTTAATC
5165922 TGACTCATGG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 26 0.65
36 13 0.32
ACGTcount: A:0.15, C:0.11, G:0.19, T:0.56
Consensus pattern (35 bp):
TGGTTTAATCGTAATTGTTTTCCTTTTTTGACTAG
Found at i:5165960 original size:31 final size:31
Alignment explanation
Indices: 5165922--5165980 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
5165912 TGGTTTAATC
5165922 TGACTCATGGCTTAAACATAGTCATTTTTTT
1 TGACTCATGGCTTAAACATAGTCATTTTTTT
*
5165953 TGACTCATGGTTTAAACATAGTCATTTT
1 TGACTCATGGCTTAAACATAGTCATTTT
5165981 CATTTTTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (31 bp):
TGACTCATGGCTTAAACATAGTCATTTTTTT
Found at i:5166059 original size:35 final size:36
Alignment explanation
Indices: 5165977--5166067 Score: 112
Period size: 36 Copynumber: 2.6 Consensus size: 36
5165967 AACATAGTCA
* * *
5165977 TTTTCATTTTTTGACTCGTGGTCTAATCATGGTAGT
1 TTTTCATTTCTTGACTCGTGGTCTAATCACGATAGT
* * * *
5166013 TTTTCATTTCTTGACTCGTGTTTTATTCACGATCG-
1 TTTTCATTTCTTGACTCGTGGTCTAATCACGATAGT
5166048 TTTTCATTTCTTGACTCGTG
1 TTTTCATTTCTTGACTCGTG
5166068 ATTTGAACCC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 20 0.42
36 28 0.58
ACGTcount: A:0.14, C:0.18, G:0.16, T:0.52
Consensus pattern (36 bp):
TTTTCATTTCTTGACTCGTGGTCTAATCACGATAGT
Found at i:5166081 original size:35 final size:36
Alignment explanation
Indices: 5166013--5166099 Score: 99
Period size: 35 Copynumber: 2.5 Consensus size: 36
5166003 TCATGGTAGT
* *
5166013 TTTTCATTTCTTGACTCGTGTTTTATTCACGATCG-
1 TTTTCATTTCTTGACTCGTGTTTGATACACGATCGC
*
5166048 TTTTCATTTCTTGACTCGTGATTTGA-ACCCGATCGC
1 TTTTCATTTCTTGACTCGTG-TTTGATACACGATCGC
* *
5166084 ATTT-ATTTTTTGACTC
1 TTTTCATTTCTTGACTC
5166100 ATGGTTTAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
35 38 0.84
36 7 0.16
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.49
Consensus pattern (36 bp):
TTTTCATTTCTTGACTCGTGTTTGATACACGATCGC
Found at i:5166267 original size:35 final size:35
Alignment explanation
Indices: 5166228--5166377 Score: 90
Period size: 35 Copynumber: 4.3 Consensus size: 35
5166218 TTTTTGACGG
*
5166228 TGGTTTAATCACGGTTATTTCCATTTTCGGACTCA
1 TGGTTTAATCACAGTTATTTCCATTTTCGGACTCA
** * * *
5166263 TGGTTTAATCTTAGTTGTTTCCATTCTCTGG-CTCG
1 TGGTTTAATCACAGTTATTTCCATTTTC-GGACTCA
* * * * * *
5166298 TGCTTTAATCTA-GGTCATTTTCTTTTTCTGACTCAA
1 TGGTTTAATC-ACAGTTATTTCCATTTTCGGACTC-A
* * * * * *
5166334 T-GTTTAATCCCACTTGTTTTCATTTTCTGACTCG
1 TGGTTTAATCACAGTTATTTCCATTTTCGGACTCA
5166368 TGGTTTAATC
1 TGGTTTAATC
5166378 CAAGTTGTTT
Statistics
Matches: 85, Mismatches: 24, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
34 2 0.02
35 80 0.94
36 3 0.04
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (35 bp):
TGGTTTAATCACAGTTATTTCCATTTTCGGACTCA
Found at i:5166378 original size:35 final size:35
Alignment explanation
Indices: 5166315--5166395 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
5166305 ATCTAGGTCA
* *
5166315 TTTTCTTTTTCTGACTCAATGTTTAATCCCACTTG
1 TTTTCATTTTCTGACTCAATGTTTAATCCAACTTG
* *
5166350 TTTTCATTTTCTGACTC-GTGGTTTAATCCAAGTTG
1 TTTTCATTTTCTGACTCAAT-GTTTAATCCAACTTG
5166385 TTTTGCATTTT
1 TTTT-CATTTT
5166396 TTAACTTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 33 0.82
36 6 0.15
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCAATGTTTAATCCAACTTG
Found at i:5166411 original size:36 final size:35
Alignment explanation
Indices: 5166336--5166414 Score: 86
Period size: 36 Copynumber: 2.2 Consensus size: 35
5166326 TGACTCAATG
* * **
5166336 TTTAATCCCACTTGTTTTCATTTTCTGACTCGTGG
1 TTTAATCCAACTTGTTTTCATTTTCTAACTCGTAC
* * *
5166371 TTTAATCCAAGTTGTTTTGCATTTTTTAACTTGTAC
1 TTTAATCCAACTTGTTTT-CATTTTCTAACTCGTAC
5166407 TTTAATCC
1 TTTAATCC
5166415 CAGTCATTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 16 0.44
36 20 0.56
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.51
Consensus pattern (35 bp):
TTTAATCCAACTTGTTTTCATTTTCTAACTCGTAC
Found at i:5166563 original size:35 final size:35
Alignment explanation
Indices: 5166508--5167803 Score: 352
Period size: 35 Copynumber: 36.9 Consensus size: 35
5166498 TTCATTTTTT
* *
5166508 GATCATTTTCATTTTTTGACTCGTGCTTTAATCCC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * ***
5166543 AATCGTTTTCATTTTCTGACTCAATG-TTTAATGTT
1 GATCGTTTTCATTTTTTGACTC-GTGATTTAATCCC
* * * * * *
5166578 GGTTGTTTTC-TTTTTTCTAGCTAGTGGTTTAATCTC
1 GATCGTTTTCATTTTTT-GA-CTCGTGATTTAATCCC
* * * * *
5166614 GATCATTTTTATTTTTTGACTCATGGTTTAATCCA
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * *
5166649 TATCGTTTTCATTTTTTGATTAGTGATTTAATCCT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * *
5166684 GGTCACTTTTTA-TTTTTGACTCGTGATTTAATCTC
1 GATC-GTTTTCATTTTTTGACTCGTGATTTAATCCC
* * *
5166719 -AGTCGTTGTCATTTCTTGACTCATGATTTAATCCC
1 GA-TCGTTTTCATTTTTTGACTCGTGATTTAATCCC
** * * *
5166754 GATTATTTTCATTTCTTAACTCGTGATTTAAACCC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
**** *
5166789 GATTAAATTCATTTTTTGACTCGTGGTTTAAT-CC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * * *
5166823 TAGTCGTTTTCATTTTTTGACTCATGGTTTCATCTC
1 GA-TCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * ** *
5166859 GGTCATTTTCATTTTTTGACTC-ACAGTTTTATCCC
1 GATCGTTTTCATTTTTTGACTCGTGA-TTTAATCCC
* * * ** **
5166894 GATCTTTTTAATTTTTTAACTAATGATTTAATTTC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * * **
5166929 GATCATTTTTCATTCTCTGACAT-GTGATTTAGTTTC
1 GATC-GTTTTCATTTTTTGAC-TCGTGATTTAATCCC
* * * * * * * * *
5166965 GTTGGTTTTGATTCTCTGACTCATTATTTATTCTC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* **
5167000 -AGTAGTTTTCATTTTTTGACAT-GTGATTTAATATC
1 GA-TCGTTTTCATTTTTTGAC-TCGTGATTTAATCCC
* * * * **
5167035 GATCATTTTCATTTCTTCGACTCATTATTTAATGAC
1 GATCGTTTTCATTT-TTTGACTCGTGATTTAATCCC
* * * ** *
5167071 GGTTGTTTTTCATTTTTTTTTTACTTATGATTTAATCTC
1 GATCG-TTTTCA---TTTTTTGACTCGTGATTTAATCCC
** * **
5167110 GATCGTTTTCATTTTTTGACTCACGGTTTAATCTT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * *
5167145 GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* ** * ***
5167180 -AGTTGTTTTTGTTTTCTT-ACTCATGATTTAATTTT
1 GA-TCGTTTTCATTTT-TTGACTCGTGATTTAATCCC
* * *
5167215 GGTCTTTTTCATTTTTTAACTTACG-G-TTTAATTCCC
1 GATCGTTTTCATTTTTTGAC-T-CGTGATTTAA-TCCC
*** * **
5167251 -ATCGCTTTT-ATTCCCTGACTCATGATTTAATCTT
1 GATCG-TTTTCATTTTTTGACTCGTGATTTAATCCC
* * * *
5167285 GGTCATTTTCATTTCTCTT-ATTCGTGATTTAATCCTT
1 GATCGTTTTCATTT-T-TTGACTCGTGATTTAATCC-C
* **
5167322 G-TTGTTTTCATTTTTTGACTCGTGATTTAAT-TT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * * * *
5167355 GGTTGTTTTCATTATTTAAGACACG-G-TATAATGCC
1 GATCGTTTTCATT-TTT-TGACTCGTGATTTAATCCC
** * * * * *
5167390 TCTCATTTTCATTTTCTAACTCAT-AGTTTAATCTC
1 GATCGTTTTCATTTTTTGACTCGTGA-TTTAATCCC
* * * * *
5167425 GATCATTTTCATTTTCTGAC-CAATGGTTTAATCCT
1 GATCGTTTTCATTTTTTGACTC-GTGATTTAATCCC
* * * * * *
5167460 GATCTTTTTTCTTTTTTTGACTGGTGGTGTAATCCT
1 GATC-GTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * ** * **
5167496 GGTTGTTTTCATTTATTGACTTATGGTTTAATCTG
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * * * ** **
5167531 GCTCATTTTAATTTTCTGACTCATGGCTTAATCAT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * *
5167566 GAT--TATTTCATTTTTTGACTCATGGTTTAAT-CA
1 GATCGT-TTTCATTTTTTGACTCGTGATTTAATCCC
* * * * **
5167599 TAGTCATTTTCATTTTTTGACTCGTGGTCTAATCGT
1 GA-TCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* *
5167635 GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCC
1 GATCG-TTTTCATTTTTTGACTCGTGATTTAATCCC
* * * *
5167671 TATC--ATT--TTTTTT-AAT-GGGTAGTTTAATCCC
1 GATCGTTTTCATTTTTTGACTCGTG-A-TTTAATCCC
* * * * * *
5167702 AATCGTTTTCATTTTCTGAATTGTGGTTTAATCCT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
* * * * *
5167737 GGTCATTTTCATTTTTTGATTCGTGATTTAGTCCTT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAATCC-C
* * *
5167773 G-TTGCTTTCATTTTCTGACTCGTGATTTAAT
1 GATCGTTTTCATTTTTTGACTCGTGATTTAAT
5167804 TTTGGTTGTT
Statistics
Matches: 928, Mismatches: 266, Indels: 134
0.70 0.20 0.10
Matches are distributed among these distances:
29 2 0.00
30 2 0.00
31 18 0.02
33 12 0.01
34 69 0.07
35 612 0.66
36 167 0.18
37 19 0.02
38 6 0.01
39 18 0.02
40 3 0.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (35 bp):
GATCGTTTTCATTTTTTGACTCGTGATTTAATCCC
Found at i:5166870 original size:70 final size:71
Alignment explanation
Indices: 5166510--5167669 Score: 515
Period size: 70 Copynumber: 16.5 Consensus size: 71
5166500 CATTTTTTGA
* * *
5166510 TCATTTTCATTTTTTGACTCGTGCTTTAATCC-CAATCGTTTTCATTTTCTGACTCAATG-TTTA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTC-ATGATTTA
* *
5166573 ATGTTGG
65 ATCTCGG
** * * * * *
5166580 TTGTTTTC-TTTTTTCTAGCTAGTGGTTTAAT-CTCGATCATTTTTATTTTTTGACTCATGGTTT
1 TCATTTTCATTTTTT-GA-CTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTT
**
5166643 AATC-CATA
64 AATCTC-GG
* * * * * * * *
5166651 TCGTTTTCATTTTTTGATTAGTGATTTAATCCT-GGTCACTTTTTA-TTTTTGACTCGTGATTTA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATC-GTTTTCATTTTTTGACTCATGATTTA
*
5166714 ATCTCAG
65 ATCTCGG
* * * * * ** * * *
5166721 TCGTTGTCATTTCTTGACTCATGATTTAATCC-CGATTATTTTCATTTCTTAACTCGTGATTTAA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
* * *
5166785 ACCCGA
66 TCTCGG
* ** * * *
5166791 TTAAATTCATTTTTTGACTCGTGGTTTAATCCTAG-TCGTTTTCATTTTTTGACTCATGGTTTCA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
5166855 TCTCGG
66 TCTCGG
*** * * * * *
5166861 TCATTTTCATTTTTTGACTCACAGTTTTATCC-CGATCTTTTTAATTTTTTAACTAATGATTTAA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
* *
5166925 TTTCGA
66 TCTCGG
* * * * * * * * * * *
5166931 TCATTTTTCATTCTCTGACAT-GTGATTTAGT-TTCGTTGGTTTTGATTCTCTGACTCATTATTT
1 TCA-TTTTCATTTTTTGAC-TCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTT
* *
5166994 ATTCTCAG
64 AATCTCGG
* * * * *
5167002 T-AGTTTTCATTTTTTGACAT-GTGATTTAAT-ATCGATCATTTTCATTTCTTCGACTCATTATT
1 TCA-TTTTCATTTTTTGAC-TCGTGGTTTAATCCTCGATCGTTTTCATTT-TTTGACTCATGATT
**
5167064 TAATGACGG
63 TAATCTCGG
** * ** * * *
5167073 TTGTTTTTCATTTTTTTTTTACTTATGATTTAAT-CTCGATCGTTTTCATTTTTTGACTCACGGT
1 -TCATTTTCA---TTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGAT
* *
5167137 TTAATCTTGA
62 TTAATCTCGG
* **
5167147 TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTC-AGTTGTTTTTGTTTTCTT-ACTCATGATTT
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGA-TCGTTTTCATTTT-TTGACTCATGATTT
* *
5167209 AATTTTGG
64 AATCTCGG
* * *** ***
5167217 TCTTTTTCATTTTTTAACTTACGGTTTAATTCC-C-ATCGCTTTT-ATTCCCTGACTCATGATTT
1 TCATTTTCATTTTTTGACTCGTGGTTTAA-TCCTCGATCG-TTTTCATTTTTTGACTCATGATTT
*
5167279 AATCTTGG
64 AATCTCGG
* * * * *
5167287 TCATTTTCATTTCTCTT-ATTCGTGATTTAATCCTTG-TTGTTTTCATTTTTTGACTCGTGATTT
1 TCATTTTCATTT-T-TTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTT
*
5167350 AAT-TTGG
64 AATCTCGG
** * * * * * *
5167357 TTGTTTTCATTATTTAAGACAC--GGTATAATGCCTC--TCATTTTCATTTTCTAACTCAT-AGT
1 TCATTTTCATT-TTT-TGACTCGTGGTTTAAT-CCTCGATCGTTTTCATTTTTTGACTCATGA-T
*
5167417 TTAATCTCGA
62 TTAATCTCGG
* * * * ** * *
5167427 TCATTTTCATTTTCTGAC-CAATGGTTTAATCCT-GATCTTTTTTCTTTTTTTGACTGGTGGTGT
1 TCATTTTCATTTTTTGACTC-GTGGTTTAATCCTCGATC-GTTTTCATTTTTTGACTCATGATTT
5167490 AATC-CTGG
64 AATCTC-GG
** * ** * * * * * **
5167498 TTGTTTTCATTTATTGACTTATGGTTTAAT-CTGGCTCATTTTAATTTTCTGACTCATGGCTTAA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
*
5167562 TCAT-GA
66 TC-TCGG
* * * * * * * *
5167568 TTA-TTTCATTTTTTGACTCATGGTTTAATCATAG-TCATTTTCATTTTTTGACTCGTGGTCTAA
1 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
5167631 TCGT-GG
66 TC-TCGG
*
5167637 TCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TC-ATTTTCATTTTTTGACTCGTGGTTTAATCC
5167670 CTATCATTTT
Statistics
Matches: 815, Mismatches: 220, Indels: 109
0.71 0.19 0.10
Matches are distributed among these distances:
67 1 0.00
68 4 0.00
69 102 0.13
70 407 0.50
71 229 0.28
72 17 0.02
73 7 0.01
74 16 0.02
75 32 0.04
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (71 bp):
TCATTTTCATTTTTTGACTCGTGGTTTAATCCTCGATCGTTTTCATTTTTTGACTCATGATTTAA
TCTCGG
Found at i:5167584 original size:69 final size:70
Alignment explanation
Indices: 5167502--5167668 Score: 196
Period size: 69 Copynumber: 2.4 Consensus size: 70
5167492 TCCTGGTTGT
* * *
5167502 TTTCATTTATTGACTTATGGTTTAATC-TGGCTCATTTTAATTTTCTGACTCATGG-CTTAATCA
1 TTTCATTTTTTGACTCATGGTTTAATCATAG-TCATTTTAATTTTCTGACTCATGGTC-TAATCA
5167565 TGAT-TA
64 TGATCTA
* * * *
5167571 TTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCTAATCGTG
1 TTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTAATTTTCTGACTCATGGTCTAATCATG
* *
5167636 GTCGTT
66 ATC-TA
*
5167642 TTTCATTTTTTGACTCGTGGTTTAATC
1 TTTCATTTTTTGACTCATGGTTTAATC
5167669 CCTATCATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
69 54 0.64
70 3 0.04
71 27 0.32
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (70 bp):
TTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTAATTTTCTGACTCATGGTCTAATCATG
ATCTA
Found at i:5167817 original size:35 final size:35
Alignment explanation
Indices: 5167706--5167819 Score: 113
Period size: 35 Copynumber: 3.3 Consensus size: 35
5167696 AATCCCAATC
* * * *
5167706 GTTTTCATTTTCTGAATTGTGGTTTAATCCTGGTC
1 GTTTTCATTTTCTGAATCGTGATTTAATCTTGGTT
* * * *
5167741 ATTTTCATTTTTTGATTCGTGATTTAGTCCTT-GTT
1 GTTTTCATTTTCTGAATCGTGATTTAAT-CTTGGTT
* * *
5167776 GCTTTCATTTTCTGACTCGTGATTTAATTTTGGTT
1 GTTTTCATTTTCTGAATCGTGATTTAATCTTGGTT
5167811 GTTTTCATT
1 GTTTTCATT
5167820 ATCTAAGACA
Statistics
Matches: 62, Mismatches: 15, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
34 2 0.03
35 58 0.94
36 2 0.03
ACGTcount: A:0.14, C:0.13, G:0.17, T:0.56
Consensus pattern (35 bp):
GTTTTCATTTTCTGAATCGTGATTTAATCTTGGTT
Found at i:5167962 original size:35 final size:35
Alignment explanation
Indices: 5167867--5169626 Score: 452
Period size: 35 Copynumber: 49.8 Consensus size: 35
5167857 CTAACTTATG
* ** **
5167867 TTTTCATTTTTTGATTTGTGGTTTTTTCTC-AGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* **
5167902 TTTTCATTTTCTGACTCATAATTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * *
5167937 TTTTCATTTTCTGACCCATGGTTTAATC-CTGATCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATC-A
* ** * * *
5167973 TTTTCTTTTTTTGACTGGTGGTTTAATCCTGGCT-G
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCA
** * *
5168008 TTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
*
5168043 TTTTCATTTTTTGACTCATGGTTTAATCATAG-TCA
1 TTTTCATTTTTTGACTCATGGTTTAATC-TCGATCA
** * * *
5168078 TTTTCATTTTTT-ACTCATGGCCTAGTCAT-GGTCGT
1 TTTTCATTTTTTGACTCATGGTTTAATC-TCGATC-A
* * *
5168113 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* *
5168148 TTTT--TTTTTT-A-T-A-GGTAGTGTAATCTC-AACTG
1 TTTTCATTTTTTGACTCATGGT--T-TAATCTCGATC-A
** * * **
5168180 TTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
*
5168215 TTTTCATTTTTTGACTCATGGTTTAATCCCCG-TCA
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCA
* * * * *
5168250 TTTTCATTTTCTGACTCACGATTTAATCGCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
*
5168285 TTTTCATTTTTTTGACTTC-TGGTTTAATCTCGATCG
1 TTTTCA-TTTTTTGAC-TCATGGTTTAATCTCGATCA
* * * *
5168321 TTCTTCATTTTTTGACTCATGTTTTAATCACAATCG
1 TT-TTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * * * *
5168357 TTTTCATTTCTTGACTCGTGATTTGAACCT-GATCG
1 TTTTCATTTTTTGACTCATGGTTT-AATCTCGATCA
** *
5168392 CATTCATTTTTTGACTCATGGTTTAATCTCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* ** * ** *
5168427 TTTT--TCTTTT--CT--TTTTTTGATCGT-TTTCG
1 TTTTCATTTTTTGACTCATGGTTTAATC-TCGATCA
* * * * * * *
5168456 TTTTCGTTTTCTAACTCGTAGCTTAAT-TCCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* * * *
5168491 TTTTTATTTTCTGACACAT-GTTTAATC-CTATTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* * * *
5168525 TTTTTATTTTTTTGACT-AGTTGTTTAATCACGGTCA
1 TTTTCA-TTTTTTGACTCA-TGGTTTAATCTCGATCA
* * *
5168561 -TTTCAATTTTCTGACTCATGGTTTAATCT-TAGTCG
1 TTTTC-ATTTTTTGACTCATGGTTTAATCTCGA-TCA
* * * * * *
5168596 TTTCCATTTTTTGGCTCGTGCTTTAATCTAGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* **
5168631 TTTTC-TTTTTATGACTCAAT-GTTTAATC-CCACTTG
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA-TCA
* * * **
5168666 TTTTCATTTTCTGACTCGTGGTTTAATC-CGGGTTGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTC--GATCA
* ** * *
5168702 TTTTCATTTTTTAACTCATACTTTAATC-CCAGTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* * * * *
5168737 TTTTCATTTCTTGACTCATGATTCAAACT-GGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
** * * ** * *
5168771 CATTCATTTTCTAACTTGTGGTTTAGTCCCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
** *
5168806 TTTTTTTTCATTTTTTGATCATTTTCATTTTTTGA-CTCG-TGC-
1 ----TTTTCATTTTTTGA-C----TCATGGTTTAATCTCGAT-CA
*
5168848 TTTAATCCCAATCGTTTTCATTTTCTGACTCAAT-GTTTAATCTCGGTCA
1 TTT--T--C-AT--TTTT-------TGACTC-ATGGTTTAATCTCGATCA
* * * *
5168897 TTTTCCTTTCTCT-AGCTAATGGTTTAATCTCGGTCA
1 TTTTCATTT-TTTGA-CTCATGGTTTAATCTCGATCA
** ** * *
5168933 TTTTCATTTCATGACTCGGGGTTTAATC-CTTATCG
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCA
* ** * *
5168968 TTTTTATTTTTTGACTGGTGATTTAATC-CTGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCA
* * * *
5169003 CTTTTTA-TTTTTGACTCGTGATTTAATCTC-AGTCG
1 -TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* * ** * * **
5169038 TTGTCATTTCTTGACTCATAATTTAATCCCAATTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * ** * **
5169073 TTTTCATTTCTTAACTCATTATTTAAAC-CTGATTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCA
* ** * *
5169108 TATTCATTTTTTGACTCGGGGTTTAATC-CTGGTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCA
* * *
5169143 TTTTAATTTTTTGACTCATGGTTTCATCTCGATCG
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * * * * *
5169178 TTTTCATTTTCTAACTCGTGATTTAATCTCGGTCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
** * * * * *
5169213 TTTTTGTCTTCTAACTCATAGTTTAAT-ACGAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
** *
5169248 TTTTCATTTTTTGACTCACAGTTTAATCTCGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * * *
5169283 TTTTCATTTTTTAACTCGTGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
* * * * * * **
5169318 TTTTTCATTCTCT-A-ACATGTGATTTAGTTTCGGTGG
1 -TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATCA
* * *
5169354 TTTTGATTTTTTGACTCATGATTTATTCTC-AGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* *
5169388 GTTTTCATTTTTTGA--CATGTGATTTAATATCAATCA
1 -TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATCA
* * * ** * **
5169424 TTTTCGTTTCTCTAACTCATAATTTAAT-GCGATTGT
1 TTTTCATTT-TTTGACTCATGGTTTAATCTCGA-TCA
* * * *
5169460 TTTTCATTTTCTGAAT--TGCGATTTAATGTCGATCG
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATCA
* *
5169495 TTTTCATTTTTTGACTCAAGGTTTAATC-CTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCA
** *
5169530 TTTTCATTTTTTGACTTGTGGTTTAATCTCGGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
** * * * *
5169564 GTTTTTGTTTTCTGACTCATGATTTAATTTC-AGTCT
1 -TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCA
* *
5169600 TTTTCATTTTTTGACTTACGGTTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAAT
5169627 TCCCATCGCT
Statistics
Matches: 1265, Mismatches: 334, Indels: 252
0.68 0.18 0.14
Matches are distributed among these distances:
29 16 0.01
30 1 0.00
31 10 0.01
32 11 0.01
33 20 0.02
34 91 0.07
35 814 0.64
36 222 0.18
37 15 0.01
38 9 0.01
39 10 0.01
40 2 0.00
42 4 0.00
43 7 0.01
44 6 0.00
45 5 0.00
47 7 0.01
48 7 0.01
49 4 0.00
51 1 0.00
52 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGGTTTAATCTCGATCA
Found at i:5168297 original size:72 final size:72
Alignment explanation
Indices: 5168215--5168365 Score: 193
Period size: 72 Copynumber: 2.1 Consensus size: 72
5168205 ATCTGGGTTG
5168215 TTTTCA-TTTTTTGAC-TCATGGTTTAATCCCCG-TCATT-TTCATTTTCTGACTCACGATTTAA
1 TTTTCATTTTTTTGACTTC-TGGTTTAAT-CCCGATCATTCTTCATTTTCTGACTCACGATTTAA
*
5168276 TCGCAATCA
64 TCACAATCA
* * * * *
5168285 TTTTCATTTTTTTGACTTCTGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCATGTTTTAATC
1 TTTTCATTTTTTTGACTTCTGGTTTAATCCCGATCATTCTTCATTTTCTGACTCACGATTTAATC
*
5168350 ACAATCG
66 ACAATCA
5168357 TTTTCATTT
1 TTTTCATTT
5168366 CTTGACTCGT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
70 9 0.13
71 22 0.31
72 39 0.56
ACGTcount: A:0.19, C:0.20, G:0.10, T:0.51
Consensus pattern (72 bp):
TTTTCATTTTTTTGACTTCTGGTTTAATCCCGATCATTCTTCATTTTCTGACTCACGATTTAATC
ACAATCA
Found at i:5168380 original size:107 final size:105
Alignment explanation
Indices: 5167867--5168373 Score: 329
Period size: 106 Copynumber: 4.8 Consensus size: 105
5167857 CTAACTTATG
* * ** * * ** *
5167867 TTTTCATTTTTTGATTTGTGGTTTTTTCTC-AGTCATTTTCATTTTCTGACTCATAATTTAATCT
1 TTTTCATTTTTTGACTTCTGGTTTAATCTCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCA
* * * * * *
5167931 CGATCATTTTCATTTTCTGACCCATGGTTTAATC-CTGATCGT
65 CAATCATTTTCATTTTCTGACTCACGATTTAATCGC-AATC-A
* ** * * ** *
5167973 TTTTCTTTTTTTGACTGGTGGTTTAATCCTGGCT-GTTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTTCTGGTTTAAT-CTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCA
*** * * * ** *
5168037 GGCTCATTTTCATTTTTTGACTCATGGTTTAATCATAGTCA
65 CAATCATTTTCATTTTCTGACTCACGATTTAATCGCAATCA
** * * *
5168078 TTTTCATTTTTT-AC-TCATGGCCTAGTCAT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAAT
1 TTTTCATTTTTTGACTTC-TGGTTTAATC-TCGATCG-TTTTCATTTTTTGACTCATGGTTTAAT
* * * * * * *
5168140 CCCTATCATTTT--TTTT-TTA-T-AGGTAGTGTAATCTCAA-CTG
63 CACAATCATTTTCATTTTCTGACTCACG-A-TTTAATCGCAATC-A
* * * * *
5168180 TTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTTCTGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
**
5168245 CGTCATTTTCATTTTCTGACTCACGATTTAATCGCAATCA
66 AATCATTTTCATTTTCTGACTCACGATTTAATCGCAATCA
*
5168285 TTTTCATTTTTTTGACTTCTGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCATGTTTTAATC
1 TTTTCA-TTTTTTGACTTCTGGTTTAATCTCGATCGTT-TTCATTTTTTGACTCATGGTTTAATC
*
5168350 ACAATCGTTTTCA-TTTCTTGACTC
64 ACAATCATTTTCATTTTC-TGACTC
5168374 GTGATTTGAA
Statistics
Matches: 316, Mismatches: 63, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
100 2 0.01
101 2 0.01
102 58 0.18
103 20 0.06
104 15 0.05
105 62 0.20
106 112 0.35
107 45 0.14
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (105 bp):
TTTTCATTTTTTGACTTCTGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCAC
AATCATTTTCATTTTCTGACTCACGATTTAATCGCAATCA
Found at i:5168398 original size:107 final size:105
Alignment explanation
Indices: 5167869--5168430 Score: 265
Period size: 106 Copynumber: 5.4 Consensus size: 105
5167859 AACTTATGTT
* * ** * * ** * *
5167869 TTCATTTTTTGATTTGTGGTTTTTTCTC-AGTCATTTTCATTTTCTGACTCATAATTTAATCTCG
1 TTCATTTTTTGACTTCTGGTTTAATCTCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCACA
* * * * ***
5167933 ATCATTTTCATTTTCTGACCCATGGTTTAATC-CTGATCGTTT
65 ATCATTTTCATTTTCTGACTCACGATTTAATCGC-AATC-ACA
* ** * * ** ***
5167975 TTCTTTTTTTGACTGGTGGTTTAATCCTGGCT-GTTTTCATTTTTTGACTTGTGGTTTAATCTGG
1 TTCATTTTTTGACTTCTGGTTTAAT-CTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCACA
* * * * ** * **
5168039 CTCATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATT
65 ATCATTTTCATTTTCTGACTCACGATTTAATCGCAATCACA
** * * * *
5168080 TTCATTTTTT-AC-TCATGGCCTAGTCAT-GGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTCATTTTTTGACTTC-TGGTTTAATC-TCGATCG-TTTTCATTTTTTGACTCATGGTTTAATCA
* * * * * ***
5168142 CTATCATTTT--TTTT-TTA-T-AGGTAGTGTAATCTCAA-CTGTT
63 CAATCATTTTCATTTTCTGACTCACG-A-TTTAATCGCAATC-ACA
* * * * * **
5168182 TTCATTTTTTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCG
1 TTCATTTTTTGACTTCTGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCACAA
**
5168247 TCATTTTCATTTTCTGACTCACGATTTAATCGCAATCATT
66 TCATTTTCATTTTCTGACTCACGATTTAATCGCAATCACA
*
5168287 TTCATTTTTTTGACTTCTGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCATGTTTTAATCAC
1 TTCA-TTTTTTGACTTCTGGTTTAATCTCGATCGTT-TTCATTTTTTGACTCATGGTTTAATCAC
* ** * *
5168352 AATCGTTTTCA-TTTCTTGACTCGTGATTTGAA-C-CTGATCGCA
64 AATCATTTTCATTTTC-TGACTCACGATTT-AATCGC-AATCACA
* *
5168394 TTCATTTTTTGAC-TCATGGTTTAATCTCAATCATTTT
1 TTCATTTTTTGACTTC-TGGTTTAATCTCGATCGTTTT
5168431 TCTTTTCTTT
Statistics
Matches: 360, Mismatches: 71, Indels: 51
0.75 0.15 0.11
Matches are distributed among these distances:
100 2 0.01
101 2 0.01
102 58 0.16
103 20 0.06
104 15 0.04
105 66 0.18
106 137 0.38
107 58 0.16
108 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (105 bp):
TTCATTTTTTGACTTCTGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCACAA
TCATTTTCATTTTCTGACTCACGATTTAATCGCAATCACA
Found at i:5169469 original size:106 final size:104
Alignment explanation
Indices: 5169143--5169469 Score: 272
Period size: 106 Copynumber: 3.1 Consensus size: 104
5169133 ATCCTGGTCG
* * * * *
5169143 TTTTAATTTTTTGACTCATGGTTTCATCTCGATCGTTTTCATTTTCTAACTCGTGATTTAATCTC
1 TTTTCATTTTTTGACTCATGATTT-ATCTCG-TAGTTTTCATTTTTTAACTCGTGATTTAATATC
* * * * * *
5169208 GGTCTTTTTTGTCT-TCTAACTCATAGTTTAATACGAGTCA
64 GATCATTTTCGTTTCTCTAACTCATAATTTAATACGAGTGA
* *
5169248 TTTTCATTTTTTGACTCA-CAGTTTAATCTCGGTCA-TTTTCATTTTTTAACTCGTGATTTAATT
1 TTTTCATTTTTTGACTCATGA-TTT-ATCTC-GT-AGTTTTCATTTTTTAACTCGTGATTTAATA
* * * * * *
5169311 TCGATCATTTTTC-ATTCTCTAACAT-GTGATTTAGTTTCG-GTGG
62 TCGATCA-TTTTCGTTTCTCTAAC-TCATAATTTA-ATACGAGTGA
* *
5169354 TTTTGATTTTTTGACTCATGATTTATTCTCAGTAGTTTTCATTTTTTGACAT-GTGATTTAATAT
1 TTTTCATTTTTTGACTCATGATTTA-TCTC-GTAGTTTTCATTTTTTAAC-TCGTGATTTAATAT
* * * *
5169418 CAATCATTTTCGTTTCTCTAACTCATAATTTAATGCGATTGT
63 CGATCATTTTCGTTTCTCTAACTCATAATTTAATACGAGTGA
5169460 TTTTCATTTT
1 TTTTCATTTT
5169470 CTGAATTGCG
Statistics
Matches: 175, Mismatches: 33, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
105 69 0.39
106 100 0.57
107 6 0.03
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.52
Consensus pattern (104 bp):
TTTTCATTTTTTGACTCATGATTTATCTCGTAGTTTTCATTTTTTAACTCGTGATTTAATATCGA
TCATTTTCGTTTCTCTAACTCATAATTTAATACGAGTGA
Found at i:5169975 original size:141 final size:141
Alignment explanation
Indices: 5169829--5170107 Score: 323
Period size: 141 Copynumber: 2.0 Consensus size: 141
5169819 TTTTTTTCAG
* * *
5169829 TCATTTTCATTTTTTGACTCATAATTTAATCT-CGATCATTTTCATTTTTTGACCCAAGGTTTAA
1 TCATTTTCATTTTCTGACTAATAACTTAAT-TACGATCATTTTCATTTTTTGACCCAAGGTTTAA
* * ** * ** *
5169893 TCCT-GATCGTTTTTC-TTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTT-ATTTTTTGACTT
65 TCATAG-TC-ATTTTCATTTTTTT-ACTCATGGTCTAATCCTGGTCATTTTTCATTTTTTAACTT
5169955 GTGATTTAATCTGGC
127 GTGATTTAATCTGGC
** * * **
5169970 TCATTTTCATTTTCTGACTAATGGCTTAATTAGGATTATTTTCATTTTTTGACTTAAGGTTTAAT
1 TCATTTTCATTTTCTGACTAATAACTTAATTACGATCATTTTCATTTTTTGACCCAAGGTTTAAT
* *
5170035 CATAGTCATTTTCATTTTTTTACTCATGGTCTAATCGTGGTCATTTTTCATTTTTTAACTTGTGG
66 CATAGTCATTTTCATTTTTTTACTCATGGTCTAATCCTGGTCATTTTTCATTTTTTAACTTGTGA
5170100 TTTAATCT
131 TTTAATCT
5170108 TTTGACATAT
Statistics
Matches: 115, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
140 27 0.23
141 87 0.76
142 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (141 bp):
TCATTTTCATTTTCTGACTAATAACTTAATTACGATCATTTTCATTTTTTGACCCAAGGTTTAAT
CATAGTCATTTTCATTTTTTTACTCATGGTCTAATCCTGGTCATTTTTCATTTTTTAACTTGTGA
TTTAATCTGGC
Found at i:5170106 original size:36 final size:34
Alignment explanation
Indices: 5169828--5170107 Score: 211
Period size: 35 Copynumber: 8.0 Consensus size: 34
5169818 TTTTTTTTCA
* **
5169828 GTCATTTTCATTTTTTGACTCATAATTTAATCTCG
1 GTCATTTTCATTTTTTGACTTATGGTTTAATCT-G
* ** *
5169863 ATCATTTTCATTTTTTGACCCAAGGTTTAATCCTG
1 GTCATTTTCATTTTTTGACTTATGGTTTAAT-CTG
* * * **
5169898 ATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTG
1 GTC-ATTTTCATTTTTTGACTTATGGTTTAAT-CTG
** * * *
5169934 GTTGTTTTTATTTTTTGACTTGTGATTTAATCTG
1 GTCATTTTCATTTTTTGACTTATGGTTTAATCTG
* * *
5169968 GCTCATTTTCATTTTCTGACTAATGGCTTAAT-TAG
1 G-TCATTTTCATTTTTTGACTTATGGTTTAATCT-G
* * *
5170003 GATTATTTTCATTTTTTGACTTAAGGTTTAATCATA
1 G-TCATTTTCATTTTTTGACTTATGGTTTAATC-TG
* * *
5170039 GTCATTTTCATTTTTTTACTCATGGTCTAATCGTG
1 GTCATTTTCATTTTTTGACTTATGGTTTAATC-TG
* *
5170074 GTCATTTTTCATTTTTTAACTTGTGGTTTAATCT
1 GTCA-TTTTCATTTTTTGACTTATGGTTTAATCT
5170108 TTTGACATAT
Statistics
Matches: 194, Mismatches: 44, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
34 5 0.03
35 134 0.69
36 54 0.28
37 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.53
Consensus pattern (34 bp):
GTCATTTTCATTTTTTGACTTATGGTTTAATCTG
Found at i:5170173 original size:91 final size:91
Alignment explanation
Indices: 5170016--5170197 Score: 310
Period size: 91 Copynumber: 2.0 Consensus size: 91
5170006 TATTTTCATT
* *
5170016 TTTTGACTTAAGGTTTAATCATAGTCATTTTCATTTTTTTACTCATGGTCTAATCGTGGTCATTT
1 TTTTGACATAAGGTTTAATCATAGTCATTTTCATTTTTTTACTCATGGTCTAATCATGGTCATTT
*
5170081 TTCATTTTTTAACTTGTGGTTTAATC
66 TTCATTTTTTAACTCGTGGTTTAATC
* * *
5170107 TTTTGACATATGGTTTAATCATAGTCATTTTCATTTTTTTACTCGTGGTCTAATCATGGTCGTTT
1 TTTTGACATAAGGTTTAATCATAGTCATTTTCATTTTTTTACTCATGGTCTAATCATGGTCATTT
5170172 TTCATTTTTTAACTCGTGGTTTAATC
66 TTCATTTTTTAACTCGTGGTTTAATC
5170198 CCTATCATTT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (91 bp):
TTTTGACATAAGGTTTAATCATAGTCATTTTCATTTTTTTACTCATGGTCTAATCATGGTCATTT
TTCATTTTTTAACTCGTGGTTTAATC
Found at i:5170393 original size:142 final size:142
Alignment explanation
Indices: 5170227--5170526 Score: 372
Period size: 142 Copynumber: 2.1 Consensus size: 142
5170217 TGATGGGTAG
**
5170227 TTTAATCCCAATTGTTTTCA-TTTTTTGACTTGTGGTTTAATCCTGGTCGTT-TTCATTTTCTGA
1 TTTAATCCCAATCATTTTCATTTTTTTGACTTGTGGTTTAATCCTGGTCGTTCTTCATTTTCTGA
* *** * ** * * * **
5170290 CTTGTGGTTTAATTTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCG-TCGTTTTCATT
66 CTCGTGGTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAA-ACCCGATCGCATTCATT
5170354 TTTCGACTCACGA
130 TTTCGACTCACGA
* * * *
5170367 TTTAATCGCGATCATTTTCATTTTTTTGACTTGTGGTTTAATCTTGGTCGTTCTTCATTTTTTGA
1 TTTAATCCCAATCATTTTCATTTTTTTGACTTGTGGTTTAATCCTGGTCGTTCTTCATTTTCTGA
*
5170432 CTCGTGTTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAAACCCGATCGCATTCATTT
66 CTCGTGGTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAAACCCGATCGCATTCATTT
* * *
5170497 TTTGACTCATGG
131 TTCGACTCACGA
5170509 TTTAATCCCAATCATTTT
1 TTTAATCCCAATCATTTT
5170527 ACTTTTTCAT
Statistics
Matches: 133, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
140 16 0.12
141 34 0.26
142 83 0.62
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (142 bp):
TTTAATCCCAATCATTTTCATTTTTTTGACTTGTGGTTTAATCCTGGTCGTTCTTCATTTTCTGA
CTCGTGGTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAAACCCGATCGCATTCATTT
TTCGACTCACGA
Found at i:5170459 original size:107 final size:106
Alignment explanation
Indices: 5170276--5170515 Score: 290
Period size: 107 Copynumber: 2.3 Consensus size: 106
5170266 ATCCTGGTCG
* *
5170276 TTTTCATTTTCTGACTTGTGGTTTAAT-TTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTTGTGGTTTAATCTTGGGTCGTTTTCATTTTTTGACTCATGGTTTAATCC
* * * *
5170340 CCGTCGTTTTCATTT-TTCGACTCACGATTTAATCGCGATCA
66 ACGTCATTTTCATTTCTT-GACTCACGATTTAAACCCGATCA
* *
5170381 TTTTCATTTTTTTGACTTGTGGTTTAATCTT-GGTCGTTCTTCATTTTTTGACTCGTGTTTTAAT
1 TTTTCA-TTTTTTGACTTGTGGTTTAATCTTGGGTCGTT-TTCATTTTTTGACTCATGGTTTAAT
* *
5170445 -CACGATCATTTTCATTTCTTGACTCATGATTTAAACCCGATCG
64 CCACG-TCATTTTCATTTCTTGACTCACGATTTAAACCCGATCA
** **
5170488 CATTCATTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTTGTGGTTTAATC
5170516 CCAATCATTT
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
105 6 0.05
106 49 0.42
107 59 0.51
108 2 0.02
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (106 bp):
TTTTCATTTTTTGACTTGTGGTTTAATCTTGGGTCGTTTTCATTTTTTGACTCATGGTTTAATCC
ACGTCATTTTCATTTCTTGACTCACGATTTAAACCCGATCA
Found at i:5170533 original size:35 final size:35
Alignment explanation
Indices: 5170131--5170526 Score: 256
Period size: 35 Copynumber: 11.2 Consensus size: 35
5170121 TTAATCATAG
* * * ** *
5170131 TCATTTTCATTTTTTTACTCGTGGTCTAATCATGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
* * * *
5170166 TCGTTTTTCATTTTTTAACTCGTGGTTTAATCCCTA
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCCCGA
* ** * *
5170202 TCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAA
1 TCA-TTTTCATTTTTTGACT-CATGGTTTAATCCCGA
** ** * *
5170238 TTGTTTTCATTTTTTGACTTGTGGTTTAATCCTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
* * ** *** *
5170273 TCGTTTTCATTTTCTGACTTGTGGTTTAATTTGGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
**
5170308 TTGTTTTCATTTTTTGACTCATGGTTTAATCCCCG-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CCCGA
* * * * *
5170343 TCGTTTTCATTTTTCGACTCACGATTTAATCGCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
** ** *
5170378 TCATTTTCATTTTTTTGACTTGTGGTTTAATCTTGG
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCCCGA
* * * *
5170414 TCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGA
1 TCATT-TTCATTTTTTGACTCATGGTTTAATCCCGA
* * *
5170450 TCATTTTCATTTCTTGACTCATGATTTAAACCCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
*** *
5170485 TCGCATTCATTTTTTGACTCATGGTTTAATCCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
5170520 TCATTTT
1 TCATTTT
5170527 ACTTTTTCAT
Statistics
Matches: 284, Mismatches: 69, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
34 3 0.01
35 174 0.61
36 103 0.36
37 4 0.01
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCCCGA
Found at i:5170618 original size:35 final size:34
Alignment explanation
Indices: 5170578--5170784 Score: 118
Period size: 35 Copynumber: 6.0 Consensus size: 34
5170568 CTTAATTCCA
*
5170578 GTCATTTTCATTTTTTGACTTATGGTTTAATCTT
1 GTCATTTTCATTTTTTGACTCATGGTTTAATCTT
* * *
5170612 GTTCATTTT--TTTTTCTGA-TCGGTGGTTTCATCCCT
1 G-TCATTTTCATTTTT-TGACTC-ATGGTTTAAT-CTT
* *
5170647 GTCATTTCCATTTTTTGACTCATAGTTTAATCTT
1 GTCATTTTCATTTTTTGACTCATGGTTTAATCTT
* * * ***
5170681 AGTCGTTTTCATTTTCTGGCTCATACATTAATCTAT
1 -GTCATTTTCATTTTTTGACTCATGGTTTAATCT-T
* *
5170717 GTCCTTTTC-TTTTTCTGACTCAAT-GTTTAATCCTA
1 GTCATTTTCATTTTT-TGACTC-ATGGTTTAAT-CTT
* ** * **
5170752 CTTGTTTTCATTTTCTGACTTGTGGTTTAATCT
1 GTCATTTTCATTTTTTGACTCATGGTTTAATCT
5170785 AGGTTGTTTT
Statistics
Matches: 132, Mismatches: 27, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
33 6 0.05
34 27 0.20
35 83 0.63
36 16 0.12
ACGTcount: A:0.16, C:0.18, G:0.12, T:0.54
Consensus pattern (34 bp):
GTCATTTTCATTTTTTGACTCATGGTTTAATCTT
Found at i:5171046 original size:35 final size:35
Alignment explanation
Indices: 5170909--5171611 Score: 308
Period size: 35 Copynumber: 20.0 Consensus size: 35
5170899 TTTTTATTTT
*
5170909 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* ** * *
5170943 TCCAATTGTTTTCATTTTCTGACTCAAT-GTTTAATC
1 T-CGATCATTTTCATTTTTTGACTC-GTGGTTTAATC
* * * *
5170979 TCGGTCATTTTC-TTTTTTCTAGCTAGTAGTTTAATC
1 TCGATCATTTTCATTTTTT-GA-CTCGTGGTTTAATC
*
5171015 TCGATCATTTTCATTTTCTGACTCGTGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5171050 -CTTATCGTTTTCACTTTTTGACTAGTGATTTAATC
1 TC-GATCATTTTCATTTTTTGACTCGTGGTTTAATC
* *
5171085 -CTGGTCACTTTTTA-TTTTTGACTCG-GGATTTAATC
1 TC-GATCA-TTTTCATTTTTTGACTCGTGG-TTTAATC
* * * * * *
5171120 TC-AGTCGTTGTCATTTCTTAACTCATGATTTAATC
1 TCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATC
** * * *
5171155 -CTGATTGTTTTCA-TTCTTAACTCGTGATTTAAATC
1 TC-GATCATTTTCATTTTTTGACTCGTGGTTT-AATC
** *
5171190 -CGATTGTATTCATTTTTTGACTCGTGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * ** *
5171224 -CTGGTCATTTCCATTTTTTAACTTATGGTTTCATC
1 TC-GATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5171259 TCGGTCGTTTTCATTTTTTTGACTTGCGATTTAATC
1 TCGATCATTTTCA-TTTTTTGACTCGTGGTTTAATC
* ** * * *
5171295 TCGATCTTTTTGGTTTTGTAACT-GTAGTTTAATAC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-C
* * * ***
5171330 -GGGTCATTTTCATTTTTTGACACACAGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * * * *
5171364 CCGGTCATTTTCATTTTTTAACTCATGATTTAATT
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * * *
5171399 TCGATCATTTTTCATTCTCTGACAT-GTGATTTAGTT
1 TCGATCA-TTTTCATTTTTTGAC-TCGTGGTTTAATC
* ** * * * * * *
5171435 TCGGTGGTTTTGATTTTCTGGCTCATGATTTATTC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* * * *
5171470 TC-AGTAAATTTCATTTTTTGACAT-GTGATTTAATA
1 TCGA-TCATTTTCATTTTTTGAC-TCGTGGTTTAATC
* * * *
5171505 TCGATCATTTTCGTTTCTCTGACTCATGATTTAATC
1 TCGATCATTTTCATTT-TTTGACTCGTGGTTTAATC
* **
5171541 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
* *
5171576 -CTGATCATTTTCATTTTTTAACTCGTGGTTTCATC
1 TC-GATCATTTTCATTTTTTGACTCGTGGTTTAATC
5171611 T
1 T
5171612 TGTTTTTTTT
Statistics
Matches: 507, Mismatches: 128, Indels: 66
0.72 0.18 0.09
Matches are distributed among these distances:
34 68 0.13
35 319 0.63
36 114 0.22
37 6 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (35 bp):
TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC
Found at i:5171177 original size:34 final size:35
Alignment explanation
Indices: 5171130--5171226 Score: 126
Period size: 34 Copynumber: 2.8 Consensus size: 35
5171120 TCAGTCGTTG
* *
5171130 TCATTTCTTAACTCATGATTTAATCCTGATTGTTT
1 TCATTTCTTAACTCGTGATTTAATCCTGATTGTAT
5171165 TCA-TTCTTAACTCGTGATTTAAATCC-GATTGTAT
1 TCATTTCTTAACTCGTGATTT-AATCCTGATTGTAT
* * *
5171199 TCATTTTTTGACTCGTGGTTTAATCCTG
1 TCATTTCTTAACTCGTGATTTAATCCTG
5171227 GTCATTTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
34 31 0.57
35 23 0.43
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (35 bp):
TCATTTCTTAACTCGTGATTTAATCCTGATTGTAT
Found at i:5171554 original size:71 final size:70
Alignment explanation
Indices: 5170909--5171562 Score: 211
Period size: 71 Copynumber: 9.3 Consensus size: 70
5170899 TTTTTATTTT
* * * ** *
5170909 TCGATCGTTTTCATTTTTTGAC-TCGTGGTTTAAT-TCCAATTGTTTTCATTTTCTGACTCAATG
1 TCGATCATTTTCATTTTTTGACAT-GTGATTTAATAT-CGATCATTTTGATTTTCTGACTC-ATG
5170972 -TTTAATC
63 ATTTAATC
* * * * *
5170979 TCGGTCATTTTC-TTTTTTCTAGC-TAGT-AGTTTAATCTCGATCATTTTCATTTTCTGACTCGT
1 TCGATCATTTTCATTTTTT-GA-CAT-GTGA-TTTAATATCGATCATTTTGATTTTCTGACTCAT
*
5171041 GGTTTAATC
62 GATTTAATC
* * * * * * **
5171050 -CTTATCGTTTTCACTTTTTGAC-TAGTGATTTAAT-CCTGGTCACTTTTTATTTT-TGACTCGG
1 TC-GATCATTTTCATTTTTTGACAT-GTGATTTAATATC-GATCA-TTTTGATTTTCTGACTCAT
5171111 GATTTAATC
62 GATTTAATC
* * * * * * ** * * * *
5171120 TC-AGTCGTTGTCATTTCTTAAC-TCATGATTTAAT-CCTGATTGTTTTCATTCT-TAACTCGTG
1 TCGA-TCATTTTCATTTTTTGACAT-GTGATTTAATATC-GATCATTTTGATTTTCTGACTCATG
5171181 ATTTAAATC
63 ATTT-AATC
** * * * * ** * * * *
5171190 -CGATTGTATTCATTTTTTGAC-TCGTGGTTTAAT-CCTGGTCATTTCCATTTTTTAACTTATGG
1 TCGATCATTTTCATTTTTTGACAT-GTGATTTAATATC-GATCATTTTGATTTTCTGACTCATGA
*
5171252 TTTCATC
64 TTTAATC
* * * * * * * * * *
5171259 TCGGTCGTTTTCATTTTTTTGACTTGCGATTTAATCTCGATCTTTTTGGTTTTGTAACT-GT-AG
1 TCGATCATTTTCA-TTTTTTGACATGTGATTTAATATCGATCATTTTGATTTTCTGACTCATGA-
5171322 TTTAATAC
64 TTTAAT-C
* * *** ** * * * *
5171330 -GGGTCATTTTCATTTTTTGACA-CACAGTTTAATCCCGGTCATTTTCATTTTTTAACTCATGAT
1 TCGATCATTTTCATTTTTTGACATGTGA-TTTAATATCGATCATTTTGATTTTCTGACTCATGAT
*
5171393 TTAATT
65 TTAATC
* * * * * ** *
5171399 TCGATCATTTTTCATTCTCTGACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGGCTCATGAT
1 TCGATCA-TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTGATTTTCTGACTCATGAT
*
5171464 TTATTC
65 TTAATC
* *
5171470 TC-AGTAAATTTCATTTTTTGACATGTGATTTAATATCGATCATTTTCG-TTTCTCTGACTCATG
1 TCGA-TCATTTTCATTTTTTGACATGTGATTTAATATCGATCATTTT-GATTT-TCTGACTCATG
5171533 ATTTAATC
63 ATTTAATC
*
5171541 TCGATCGTTTTCATTTTTTGAC
1 TCGATCATTTTCATTTTTTGAC
5171563 TCACGGTTTA
Statistics
Matches: 444, Mismatches: 109, Indels: 61
0.72 0.18 0.10
Matches are distributed among these distances:
68 1 0.00
69 100 0.23
70 159 0.36
71 174 0.39
72 10 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (70 bp):
TCGATCATTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTGATTTTCTGACTCATGATT
TAATC
Found at i:5171588 original size:106 final size:105
Alignment explanation
Indices: 5170909--5177412 Score: 585
Period size: 105 Copynumber: 61.7 Consensus size: 105
5170899 TTTTTATTTT
* * * * *
5170909 TCGATCGTTTTCATTTTTTGACTCGTGGTTTAATTCC-AATTGTTTTCATTTTCTGACTCAATG-
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAA-TCCTGATCGTTTTCATTTTTTGACTC-GTGA
* * *
5170972 TTTAATCTCGGTCATTTTCTTTTTTCT-AGCTAGT-AGTTTAATC
64 TTTAATCTCGATCATTTTC-GTTTTCTGA-CTCGTGA-TTTAATC
* * * * * *
5171015 TCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCACTTTTTGACTAGTGATT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* ** *
5171080 TAATC-CTGGTCACTTTTTATTTT-TGACTCGGGATTTAATC
66 TAATCTC-GATCA-TTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * *
5171120 TC-AGTCGTTGTCATTTCTTAACTCATGATTTAATCCTGATTGTTTTCA-TTCTTAACTCGTGAT
1 TCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGAT
** * * * *
5171183 TTAAATC-CGATTGTATTCATTTTTTGACTCGTGGTTTAATC
65 TT-AATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * * *
5171224 -CTGGTCATTTCCATTTTTTAACTTATGGTTTCAT-CTCGGTCGTTTTCATTTTTTTGACTTGCG
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCA-TTTTTTGACTCGTG
* * * *
5171287 ATTTAATCTCGATCTTTTTGGTTTTGTAACT-GT-AGTTTAATAC
63 ATTTAATCTCGATCATTTTCGTTTTCTGACTCGTGA-TTTAAT-C
* * * * ** * * * * *
5171330 -GGGTCATTTTCATTTTTTGACACACAGTTTAATCCCGGTCATTTTCATTTTTTAACTCATGATT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * * *
5171394 TAATTTCGATCATTTTTCATTCTCTGACAT-GTGATTTAGTT
66 TAATCTCGATCA-TTTTCGTTTTCTGAC-TCGTGATTTAATC
* * * * * * * * ***
5171435 TCGGTGGTTTTGATTTTCTGGCTCATGATTT-ATTCTCAGTAAATTTCATTTTTTGACAT-GTGA
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCGTTTTCATTTTTTGAC-TCGTGA
* *
5171498 TTTAATATCGATCATTTTCGTTTCTCTGACTCATGATTTAATC
64 TTTAATCTCGATCATTTTCGTTT-TCTGACTCGTGATTTAATC
* * * *
5171541 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCATTTTCATTTTTTAACTCGTGGTT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * ** * * *
5171606 TCATCTTGTTTTTTTTTGTTTTCTGACTCATGATTTAATT
66 TAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * *** * * *
5171646 TTGGTCTTTTTCATTTTTTGACTTACGGTTTAATTCC-CATCGCTTCTC-TTCCCTAATTCATGA
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAA-TCCTGATCG-TTTTCATTTTTTGACTCGTGA
* * * * *
5171709 TTTAATCAT-GGTCATTTTCATTTTTTTGATTCATGATTTAATCC
64 TTTAATC-TCGATCATTTTC-GTTTTCTGACTCGTGATTTAAT-C
* * * * * * * ** * * * * ** *
5171753 TTG-TTGTTCTAATTTTCTGACTTATGATTTAATTTTGGTTGTTTTCGCTATCTAAGACACG-G-
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTC-AT-TTTTTGACTCGTGA
* * ** * * ** * *
5171815 TCTAATCCCTTTCATTTTCATTTTTTGACTTATGATTTTCATTT
64 TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGA-TTT-AATC
* * ** * *
5171859 TCTGACTCGTGATTT--TTTCTCGATCATTTTCATTTTCTGACTCATAGTTTAATCTTGATCATT
1 TC-GA-TCGT--TTTCATTTTTTGA-C----TCATGGT-T---T-A-A---T---CCTGATCGTT
* * * * * * * * *
5171922 TTCATTTTCTGACCCATGGTTTAATC-CTGATCGTTTTTCTTTTTTTGACTAGTGGTTTAATC
45 TTCATTTTTTGACTCGTGATTTAATCTC-GATC-ATTTTCGTTTTCTGACTCGTGATTTAATC
* * ** * * * *
5171984 -CTGGTAGTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGG
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGA
* ** * * * ** * *
5172047 CTTAATCAAGATTATTTTCATTTTTTGACTCACGGTTTAACC
64 TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * *
5172089 ATAG-TCATTTTCATTTTTTGACTTATGGTCTAATCATGGTCGTTTTTCATTTTTTGACTCGTGG
1 -TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCG-TTTTCATTTTTTGACTCGTGA
** * *
5172153 TTTAATC-CTTTTCATTTT--TTTT-TTA-T-GGGTAGTTTAATC
64 TTTAATCTC-GATCATTTTCGTTTTCTGACTCGTG-A-TTTAATC
* * * ** * * *
5172192 CCAAAT-GTTTTCATTTTCTGACTTGTGGTTGAATCCTGGTCGTTTTCATTTTTTGATTCGTGAT
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGAT
* ** *
5172256 TTAATC-CTTATTGTTTTCATTTTCTGACTCGTGATTTAATC
65 TTAATCTC-GATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * ** * * *
5172297 TCTG-TCATTGTT-ATTTCTTGACTCATGATTTAATCTTAATTTTTTTCATTTCTTAACTAGTGA
1 TC-GATCGTT-TTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGA
** * * * *
5172360 TTTAAATC-CGATTGTATTCATTTTTTGACTCGTGGTTTAATC
64 TTT-AATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * *
5172402 -CTGGTCATTTTCATTTTTTGACTCATGGTTTCAT-CTCGGTTGTTTTCATTTTCTGACTCGCGG
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGA
* *
5172465 TTTAATCTCTG-TCATTTTGGTTTTCTAACTCGT-AGTTTAATAC
64 TTTAATCTC-GATCATTTTCGTTTTCTGACTCGTGA-TTTAAT-C
* * * ** * * * * * **
5172508 -GGGTCATTTTCATTTTTTGACTCACAGTTTAGTCCCGATCATTTTTATTTTTTAACTAATGATT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * * *
5172572 TAATTTCGATCATTTTTCATTCTCTGACAT-GTGATTTAGTT
66 TAATCTCGATCA-TTTTCGTTTTCTGAC-TCGTGATTTAATC
* * * * ** * * *
5172613 TCGATGGTTTTGATTTTATGACTCATGATTTGTTCTTAGA-AGTTTTCATTTTTTGACAT-GTTA
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGAC-TCGTGA
* * **
5172676 TTTAATATCGATCATTTTTGTTTCTCTGACTTATGATTTAATC
64 TTTAATCTCGATCATTTTCGTTT-TCTGACTCGTGATTTAATC
* * *
5172719 TCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * ** * * * *
5172784 TCATCT--TTTTTTTTTGTTTTCTGACTCATAATTTAATT
66 TAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * *** * *
5172822 TTGGTCTTTTTCA-TATTTGACTTACGGTTTAATTCC-CATCGCTTTT-ATTCCCTGTCTCATGA
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAA-TCCTGATCG-TTTTCATTTTTTGACTCGTGA
** * * *
5172884 TTTAATC-CTGATCATTTTTATTTTTTTGATTCATGATTTAATCC
64 TTTAATCTC-GATCA-TTTTCGTTTTCTGACTCGTGATTTAAT-C
* * * * * * ** * * * ** *
5172928 TTG-TTGTTCTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCGTTATCTAAGACACG-G-
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATT-T-TTTGACTCGTGA
* * ** * * ** * * *
5172990 TCTAATCCCTCTCATTTTCATTTTCTAACTTATGGTTTTTATTT
64 TTTAATCTCGATCATTTTCGTTTTCTGACTCGT-G-ATTTAATC
** * * * * * *
5173034 TCTGACTCGTGGTTTTTTC-TCGGTCATTTTCGTTTTC-TGACTCATAGTTTAATCTCAATCATT
1 TC-GA-TC---G--TTTTCAT---T--TTTT-G-ACTCATG-GT-TTA-ATC---CT-GATCGTT
* * * * * * * * * *
5173097 TTTATTTTCTGACCCATGGTTTAATC-CTGATCGTTTTTCTTTTTTTGACTAGTGGTTTAATC
45 TTCATTTTTTGACTCGTGATTTAATCTC-GATC-ATTTTCGTTTTCTGACTCGTGATTTAATC
* * ** * * * * * *
5173159 -CTGGTAGTTTTCATTTTTTGACTTGTAGTTTAAT-CTGGTTCATTTTCATTTTCTGACTCATGG
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGA
* ** * * * ** * *
5173222 CTTAATCAGGATTATTTTCATTTTATGACTCACGGTTTAACC
64 TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * *
5173264 ATAG-TCATTTTCATTTTTTAACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGA-T-GGG
1 -TCGATCGTTTTCATTTTTTGACTCATGGTTTAAT-CCTGATC-GTTTTCATTTTTTGACTCGTG
* * * ** * * * *
5173325 TAGTTTAATCCCAATCGTTTTTATTTTCTGAGTTGTGGTTGAATC
63 -A-TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * ** * * *
5173370 AT-GGTCATTTTTATTTTTTGATTTGTGATTTAATCCTTG-TTGTTTTCATTTTCTGACTCGTGA
1 -TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCC-TGATCGTTTTCATTTTTTGACTCGTGA
* * *
5173433 TTTAATCTC-AGTCGTTGTT--ATTTCTTGACTCATGATTTAATC
64 TTTAATCTCGA-TCATT-TTCGTTTTC-TGACTCGTGATTTAATC
* * * * * * * * * * *
5173475 CCGATTGTTTTCATTTCTTAACTCGTGATTTAAAT-CTAATTGTATTCATTTTTTGACTCATGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTT-AATCCTGATCGTTTTCATTTTTTGACTCGTGAT
* * * * *
5173539 TT-ATC-CTGATCATTTTCATTTTTTGACTCATGGTTTCATC
65 TTAATCTC-GATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * ** * ** * *
5173579 TCGGTCATTTTCATTTTTTGACTCGCGGTTTAAT-CTCGATCTTTTTTGTTTTCTAACTCGT-AG
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGA-
* * * ** *
5173642 TTTAATAC-GGATCATTTTCATTTTTTGACTC-ACAGTTGAATC
64 TTTAAT-CTCGATCATTTTCGTTTTCTGACTCGTGA-TTTAATC
* * * * * * * * * *
5173684 CCGATCATTTTCATTTTTTAACTCGTGATTTAAT-TTCGATCATTTTTCATTCTCTAACAT-GTG
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATC-GTTTTCATTTTTTGAC-TCGTG
* * * * ** * * * *
5173747 AATTAGTTTCGGTGGTTTT-GATTTTTTGACTCAT-ATTTATTG
63 ATTTAATCTCGATCATTTTCG-TTTTCTGACTCGTGATTTAATC
* * * **
5173789 TC-AGTAGTTTTCATTTTTTGA--CATGTGATTTAAGAT-C-GATCATTTTCGTTTCTCCGACTC
1 TCGA-TCGTTTTCATTTTTTGACTCATG-G-TTT-A-ATCCTGATCGTTTTCATTT-TTTGACTC
* * * ** *
5173849 ATGATTTAATCTCGATCATTTTCATTTTTTGACTCACGGTTTAATC
60 GTGATTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * ** ** * *
5173895 -CTAATCATTTTAATTTTTTGACTCATGGTTTCATCCCT--TTTTTTTTGTTTTCTGACTCATGA
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCGTTTTCATTTTTTGACTCGTGA
* * * * * *
5173957 TTTAATTTTGGTCTTTTTCATTTTTTGACTTACG-G-TTTAAT-
64 TTTAATCTCGATCATTTTCGTTTTCTGAC-T-CGTGATTTAATC
* *** * * * *
5173998 TCCCATCGCTTTT-ATTCCCTGACTCGA-GATTTAATCCT-AGTCATTTTCATTTTTTTGATTCA
1 T-CGATCG-TTTTCATTTTTTGACTC-ATGGTTTAATCCTGA-TCGTTTTCA-TTTTTTGACTCG
* ** * * * * *
5174060 TGATTT-ATCCTTG-TTGTTCTCATTTTCTAACTCATGATTTAATT
61 TGATTTAAT-CTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * ** * * * * * * **
5174104 TTGGTTGTTTTCGTTATCTAAGACACA--GTCTAGTCCCT-CTCATTTTCA-TTTCTGACTTATG
1 TCGATCGTTTTCATT-T-TTTGACTCATGGTTTAAT-CCTGATCGTTTTCATTTTTTGACTCGTG
* * *
5174165 ATTTTCATTTTCTGACTCGTGATTTTTTCTCGATCATTTTCATTTTTTGACTCAT-AGTTTAATC
63 A-TTT-AATCTC-GA-TC---A---TTT-TCG----TTTTC------TGACTCGTGA-TTTAATC
* * * * *
5174229 TCGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCATTTTTTGACTGGTGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCG-TTTTCATTTTTTGACTCGTGAT
* ** * * * *
5174294 TTAATC-CTAGTTGTTTTCATTTTTTGACTTGTGGTTTAATC
65 TTAATCTCGA-TCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * ** * ** *
5174335 TAGCTCATTTTCATTTTCTGACTCATGGCTTAAT-CAGAATTATTATCATTTTTTGACTCACGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTG-ATCGTTTTCATTTTTTGACTCGTGAT
* * * * * *
5174399 TTAACCATAG-TCATTTTCATTTTTTGACTCGTGGTCTAATC
65 TTAATC-TCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * *
5174440 AT-GGTCGTTTTTCATTTTTTGACTCGTGGTTGAATCCCT-ATCATTTTTCTTTTTTTGA-T-GG
1 -TCGATCG-TTTTCATTTTTTGACTCATGGTTTAAT-CCTGATC-GTTTTCATTTTTTGACTCGT
* * * * * * *
5174501 GTAGTTTAATCCCAATCGTTTTCATTTTCTGACTTGTGGTTGAATC
62 G-A-TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * *
5174547 -CTGGTCATTTTCATTTTTTGATTCGTGATTTAATCCTTG-TTGTTTTTATTTTCTGACTCGTGA
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCC-TGATCGTTTTCATTTTTTGACTCGTGA
** * *
5174610 TTTAATCTC-AGTTGTTTTC-ATTTCTTGACTCATGATTTAATC
64 TTTAATCTCGA-TCATTTTCGTTTTC-TGACTCGTGATTTAATC
* * * * * * * * ** *
5174652 CCGATTGTTTTCATTTCTTAACTCGTGATTTAAATCC-GATTGTATTCATTTTTTGACTCAAGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTT-AATCCTGATCGTTTTCATTTTTTGACTCGTGAT
* * * ** *
5174716 TTAATCTCGGTCGTTTTCATTTTCTGACTCACGGTTTAATC
65 TTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * *
5174757 TCTG-TC-TTTTC-TGTTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCAT-
1 TC-GATCGTTTTCAT-TTTT-TGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTG
** * ***
5174818 AGTTTAATCCCAATCCCGATCATTTTTATTTTTTGACTAACGATTTAATC
63 A-TTTAAT--C--T--CGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * ** * *
5174868 TTGAT-ATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTTGTTTTTGTTTTCTGACTCATGAT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGAT
* * * ** ** * * *
5174931 TTAATTTTGGTTTTTTTTATTTTTTTAATAACG-G-TTTAAT-
65 TTAATCTCGATCATTTTCGTTTTCTGACT--CGTGATTTAATC
* * *** * * *
5174971 TCCCATTGGTTTT-ATTCCCTGACTCATGATTTAATCCTTG-TCATTTTCATTTTTCCT-ATTCG
1 T-CGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCC-TGATCGTTTTCATTTTT--TGACTCG
* ** * * *
5175033 TGATTTAATC-CTTATTGTTTTCATTTTCTTACTCGTGATTTAATT
61 TGATTTAATCTC-GATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * ** * * * * *
5175078 TTGGTTGTTTTCATTATCTAAGACACA--ATCTAATCCCT-CTCATTTTC-TTTGTTTGA--C--
1 TCGATCGTTTTCATT-T-TTTGACTCATGGTTTAAT-CCTGATCGTTTTCATTT-TTTGACTCGT
* * **
5175135 ---TT-A--T-GAT--TTTTCATTTTCTGACTCGTGGTTTTTTC
62 GATTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * * *
5175170 TCAATCATTTTCATTTTTTGACACA--GTTTAAT-CTCAATCATTTTCATTTTCTGACCCATGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGAT
* * * * * *
5175232 TTAATC-CTGATCGTTTTTCTTTTTTTGACTGGTGGTCTAATC
65 TTAATCTC-GATC-ATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * * * *
5175274 -CTGGTTGTTTTTATTTTTTGACTTATGGTTTAAT-CTGGCTCATTTTTATTTTCTGACTCATGG
1 TC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGA
* ** ** * * *
5175337 CTTAATCAGGATTC-TTTTTATTTTTTGACTCATGGTTTAATC
64 TTTAATCTCGA-TCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * *
5175379 ATAG-TC-ATTTCATTTTTTGACTCGTGGTCTAATCATGGTCGTTTTTCATTTTTTGACTCGTGG
1 -TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCG-TTTTCATTTTTTGACTCGTGA
* * * * * *
5175442 TTTAATCCCTATCATTTTTCTTTTTTTGATTGGT-AGTTTAATC
64 TTTAATCTCGATCA-TTTTCGTTTTCTGACTCGTGA-TTTAATC
* * ** * * * *
5175485 CCAATCGTTTTCATTTTTTGACTTGTGGTTTAATCCTGATCATTTTCATTTTCTGACTTGTGGTT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * ** * * * *
5175550 TAGTCTTGGTTGTTTTCATTTTTTGACTCATGGTTTAATC
66 TAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * **
5175590 ACCG-TTGTTTTCATTTTTCGA-TGCACGGTTTAATCGC-GGTCATTTTCATTTTTTTGACTTAT
1 -TCGATCGTTTTCATTTTTTGACT-CATGGTTTAATC-CTGATCGTTTTCA-TTTTTTGACTCGT
* * * ** * *
5175652 GGTTTAATCTCGGTCGTTCTTTATTTTTTGACTCGTGTTTTAATC
62 GATTTAATCTCGATCATT-TTCGTTTTCTGACTCGTGATTTAATC
* * * * * *** * *
5175697 ACGATCGTTTTCATTTCTTGACTCGTGATTTGAA-CCCGATCACATTCATTTTTTGACTCATGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTT-AATCCTGATCGTTTTCATTTTTTGACTCGTGAT
* *
5175761 TTAATCCCAATCATTTT--TCTTT-T---TC---ATTT--T-
65 TTAATCTCGATCATTTTCGT-TTTCTGACTCGTGATTTAATC
* * * * * * * * * *
5175791 TTGATCGTTTTCATTTTCTAACTCATAGCTTAATTCCAG-TCATTTTCATTTTCTGACTCATGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAA-TCCTGATCGTTTTCATTTTTTGACTCGTGAT
* * * * *
5175855 TTAATC-CTATTAATTTTTCCTTTTCTAAC-CGGTGGTTTAATC
65 TTAATCTCGA-TCA-TTTTCGTTTTCTGACTC-GTGATTTAATC
* * ** * * * *
5175897 CCGGTCGTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGGTTGTTTTCATTTTTTGACTCATGGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTGAT
* * * * ** *
5175961 TTAAACCCCG-TCATTTTCATTTTTTGACTCACGGTTTAAT-
65 TT-AATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * *
5176001 TGCAGA-CATTTTCATTTTTTTGACTTATGGTTTAAT-CTCGGTCATTCTTCATTTTTTGACTCG
1 T-C-GATCGTTTTCA-TTTTTTGACTCATGGTTTAATCCT-GATCGTT-TTCATTTTTTGACTCG
* * * *
5176064 TGTTTTAATCAT-GGTCGTTTTC-ATTTCTTGACTCGTGATTTGAA-C
61 TGATTTAATC-TCGATCATTTTCGTTTTC-TGACTCGTGATTT-AATC
* ** * * * *
5176109 CCGATCGCATTCATTTTTTGACTCAAGGTTTAATCCTAATCATTTT--TCTTTT---TC---ATT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * * *
5176166 T--T-TTGATCGTTTTCATTTTCTAACTCGT-AGCTTAAT-
66 TAATCTCGATCATTTTCGTTTTCTGACTCGTGA-TTTAATC
* * * * * *
5176202 TCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCCCGTTCATTTTTC-TTTTTCTGACTGGTG
1 TCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATC-GTTTTCATTTTT-TGACTCGTG
* * * * * * * *
5176266 GTTCAATCCCGGTCA-TTTCTATTTTCTGACACATGGTTTAATC
63 ATTTAATCTCGATCATTTTC-GTTTTCTGACTCGTGATTTAATC
* * * * * * * *
5176309 T-TAGTCGTTTTTATTTTTTGGCTCGTGCTTTAAT-CTAGGTCATTTTC-TTTTTCTGACTCAAT
1 TCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTCATTTTT-TGACTC-GT
* ** * * *
5176371 G-TTTAATC-CCACTTGTTTTCATTTTCTGACTCGTGGTTTAATG
62 GATTTAATCTCGA-TCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * ** ** * * * *
5176414 TAGGTTCTTTTTCATTTTTTAACTTGTACTTTAATCC-CAGTCATTTTCATTTCTTGACTCATGA
1 T-CGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCGTTTTCATTTTTTGACTCGTGA
* * * * ** * * * *
5176478 TTCAA-ATGGGTCACATTCATTTTCTAACTCGTGGTTTATTC
64 TTTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * *
5176519 TCGAT--TATT--TTTTTT---TCAT--TTT--T-C-GATTGTTTTCATTTTCTGACTCGTGATT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * * *
5176571 TAATCCCAATCGTTTTCATTTTCTGACTCAATG-TTTAATC
66 TAATCTCGATCATTTTCGTTTTCTGACTC-GTGATTTAATC
* * * * *
5176611 TCGGTTGTTTTCTTTTTTTTAGCT-AGTGGTTTAAT-CTCGATCATTTTCATTTTTTGACTCGTG
1 TCGATCGTTTTCATTTTTTGA-CTCA-TGGTTTAATCCT-GATCGTTTTCATTTTTTGACTCGTG
* * * ** * *
5176674 GTTTAATC-CTTATCGTTTTTATTTTTTGACTAGTGATTTAATC
63 ATTTAATCTC-GATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * * * *
5176717 TAG-TCACTTTTTA-TTTTTGACTCGTGATTTAAT-CTCAGTCGTTGTCGTTTCTTGACTCATGA
1 TCGATC-GTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCGTTTTCATTTTTTGACTCGTGA
* ** *
5176779 TTTAATCCCGATTGTTTT--TATTTCTTAACTCGTGATTTAAATC
64 TTTAATCTCGATCATTTTCGT-TTTC-TGACTCGTGATTT-AATC
* * * * ** *
5176822 -CGATTGTATTCATTTTTTGACTCATGGTTTAATCCTGGTCGTTTTCATTTTTTTACTAATGGTT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * * ** * * *
5176886 TCATCTTGGTTGTTTTCATTTTTTGACTCGCGATTTAATC
66 TAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * ** * * * * * * * * **
5176926 TCGGTCTTTTTGGTTTTGTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTC-ACAGT
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGA-T
* ** * * *
5176990 TTAATCCCGATCATTTTTATTTTTTAACTCGTGATTTAATT
65 TTAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * * * * * * * *
5177031 TC-AGTCATTTTTCATTCTCTGA--CATGTGATTTAGT-TTCGATGGTTTTGATTTTCTGACTCA
1 TCGA-TC-GTTTTCATTTTTTGACTCATG-G-TTTAATCCT-GATCGTTTTCATTTTTTGACTCG
* * * * *
5177092 TGATTTATTCTC-AGT-AGTTTTCATTTTTTGACAT-GTCATTTAATA
61 TGATTTAATCTCGA-TCA-TTTTCGTTTTCTGAC-TCGTGATTTAATC
* ** * * * *
5177137 TCGATCATTTTCATTTCTCCGACTCATGATTTAATCAC-GATCATTTTCATTTTTTTGACAC-AG
1 TCGATCGTTTTCATTT-TTTGACTCATGGTTTAATC-CTGATCGTTTTCA-TTTTTTGACTCGTG
* * * *
5177200 -TTTAATC-CTGATCATTTTCATTTTTTGACTTGTGGTTTAATC
63 ATTTAATCTC-GATCATTTTCGTTTTCTGACTCGTGATTTAATC
* * ** * * ** * * ** * *
5177242 TCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTTGTTCTTTTTCATTTTTTGACTTATGGTG
1 TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
* * *
5177307 TAAT-TCCCATCATTTT--TTTCCCTGACTCATGATTTAATC
66 TAATCT-CGATCATTTTCGTTT-TCTGACTCGTGATTTAATC
* * * * * * * *
5177346 -CTAGTCATTTTCATTTTTCTCATTCGTGATTTAATCCT--T-GTTCTCATTTTCTGACTCGTGA
1 TCGA-TCGTTTTCATTTTT-TGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGA
5177407 TTTAAT
64 TTTAAT
5177413 TCTGGTTGTT
Statistics
Matches: 4643, Mismatches: 1280, Indels: 954
0.68 0.19 0.14
Matches are distributed among these distances:
88 2 0.00
90 24 0.01
91 27 0.01
92 62 0.01
93 13 0.00
94 105 0.02
95 20 0.00
96 13 0.00
97 14 0.00
98 3 0.00
99 2 0.00
100 13 0.00
101 4 0.00
102 99 0.02
103 142 0.03
104 506 0.11
105 1549 0.33
106 1418 0.31
107 253 0.05
108 28 0.01
109 12 0.00
110 42 0.01
111 44 0.01
112 9 0.00
113 4 0.00
114 15 0.00
115 3 0.00
116 4 0.00
117 4 0.00
118 12 0.00
119 10 0.00
120 5 0.00
121 5 0.00
122 3 0.00
123 19 0.00
124 23 0.00
125 46 0.01
126 45 0.01
127 41 0.01
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (105 bp):
TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTCATTTTTTGACTCGTGATT
TAATCTCGATCATTTTCGTTTTCTGACTCGTGATTTAATC
Found at i:5171680 original size:35 final size:35
Alignment explanation
Indices: 5171524--5171679 Score: 132
Period size: 35 Copynumber: 4.5 Consensus size: 35
5171514 TTCGTTTCTC
* * * *
5171524 TGACTCATGATTTAATCTCGATCGTTTTCATTTTT
1 TGACTCACGGTTTAATCTTGATCTTTTTCATTTTT
* *
5171559 TGACTCACGGTTTAATCCTGATCATTTTCATTTTT
1 TGACTCACGGTTTAATCTTGATCTTTTTCATTTTT
* ** * * * ** *
5171594 TAACTCGTGGTTTCATCTTGTTTTTTTTTGTTTTC
1 TGACTCACGGTTTAATCTTGATCTTTTTCATTTTT
* * * *
5171629 TGACTCATGATTTAATTTTGGTCTTTTTCATTTTT
1 TGACTCACGGTTTAATCTTGATCTTTTTCATTTTT
*
5171664 TGACTTACGGTTTAAT
1 TGACTCACGGTTTAAT
5171680 TCCCATCGCT
Statistics
Matches: 92, Mismatches: 29, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
35 92 1.00
ACGTcount: A:0.17, C:0.15, G:0.13, T:0.54
Consensus pattern (35 bp):
TGACTCACGGTTTAATCTTGATCTTTTTCATTTTT
Found at i:5171768 original size:36 final size:35
Alignment explanation
Indices: 5171701--5171785 Score: 82
Period size: 36 Copynumber: 2.4 Consensus size: 35
5171691 CTCTTCCCTA
* * *
5171701 ATTCATGATTTAATCATGGTCATTTTCATTTTTTTG
1 ATTCATGATTTAATCATGGTCATTCT-AATTTTCTG
* * **
5171737 ATTCATGATTTAATCCTTGTTGTTCTAATTTTCTG
1 ATTCATGATTTAATCATGGTCATTCTAATTTTCTG
5171772 ACTT-ATGATTTAAT
1 A-TTCATGATTTAAT
5171786 TTTGGTTGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
35 18 0.44
36 23 0.56
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.54
Consensus pattern (35 bp):
ATTCATGATTTAATCATGGTCATTCTAATTTTCTG
Found at i:5171854 original size:21 final size:21
Alignment explanation
Indices: 5171828--5171903 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 21
5171818 AATCCCTTTC
* *
5171828 ATTTTCATTTTTTGACTTATG
1 ATTTTCATTTTCTGACTCATG
*
5171849 ATTTTCATTTTCTGACTCGTG
1 ATTTTCATTTTCTGACTCATG
*
5171870 ATTTT--TTCTC-GA-TC---
1 ATTTTCATTTTCTGACTCATG
5171884 ATTTTCATTTTCTGACTCAT
1 ATTTTCATTTTCTGACTCAT
5171904 AGTTTAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
14 5 0.11
16 4 0.09
17 4 0.09
18 4 0.09
19 4 0.09
21 23 0.52
ACGTcount: A:0.17, C:0.17, G:0.09, T:0.57
Consensus pattern (21 bp):
ATTTTCATTTTCTGACTCATG
Found at i:5172469 original size:105 final size:104
Alignment explanation
Indices: 5171850--5178063 Score: 799
Period size: 105 Copynumber: 59.3 Consensus size: 104
5171840 TGACTTATGA
* * * * * * *
5171850 TTTTCATTTTCTGACTCGTGATTT-TTTCTCGATCATTTTCATTTTCTGACTCATAGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATC-
* * * * *
5171914 TGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCG
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * **
5171955 TTTTTCTTTTTTTGACTAGTGGTTTAATCCTGGT-AGTTTTCATTTTTTGACTTGTGGTTTAATC
1 -TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCA-TTTTCATTTTTTGACTCATGGTTTAATC
* * * * ** *
5172019 TGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAAGATTA
64 TGG-TCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
** * * *
5172061 TTTTCATTTTTTGACTCACGGTTTAA-CCATAGTCATTTTCATTTTTTGACTTATGGTCTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCC-TGGTCATTTTCATTTTTTGACTCATGGTTTAATC-
* * *
5172125 TGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCT-TTTCA
64 TGGTCG-TTTTCATTTTCTGACTCGTGGTTTAATCCTGATT-G
* * *** * * ** *
5172167 TTTT--TTTTTT-A-TGGGTAGTTTAATCCCAAAT-GTTTTCATTTTCTGACTTGTGGTTGAATC
1 TTTTCATTTTTTGACT-CGTGGTTTAAT-CCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-
* * * *
5172227 CTGGTCGTTTTCATTTTTTGATTCGTGATTTAATCCTTATTG
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * *
5172269 TTTTCATTTTCTGACTCGTGATTTAATCTCT-GTCATTGTT-ATTTCTTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGGTCATT-TTCATTTTTTGACTCATGGTTTAATC
** ** * * *
5172332 TTAATTTTTTTCA-TTTCTTAACTAGTGATTTAAATCC-GATTG
64 -TGGTCGTTTTCATTTTC-TGACTCGTGGTTT-AATCCTGATTG
* *
5172374 TATTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTCATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT-
* * **
5172439 GGTTGTTTTCATTTTCTGACTCGCGGTTTAATCTCTG-TCA
65 GGTCGTTTTCATTTTCTGACTCGTGGTTTAATC-CTGATTG
** * * * * * ** * *
5172479 TTTTGGTTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAGTCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-CT
* * * * * ** * *
5172544 GATCATTTTTATTTTTTAACTAATGATTTAAT-TTCGATCAT-
65 GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GAT--TG
* * * * * * ** * * * **
5172585 TTTTCATTCTCTGACAT-GTGATTTAGT-TTCGATGGTTTTGATTTTATGACTCATGATTTGTTC
1 TTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATC
* ** * ** * **
5172648 TTAGAAGTTTTCATTTTTTGACAT-GTTATTTAAT-ATCGATCA
64 -TGGTCGTTTTCATTTTCTGAC-TCGTGGTTTAATCCT-GATTG
** * ** * * * *
5172690 TTTTTGTTTCTCTGACTTATGATTTAAT-CTCGATCGTTTTCATTTTTTGACTCACGGTTTAATC
1 TTTTCATTT-TTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAAT-
* * * * * *
5172754 CTGATCATTTTCATTTTTTGACTCGTGGTTTCAT-CT-TTTT
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
** * * ** ** * * * * *
5172794 TTTTTGTTTTCTGACTCATAATTTAATTTTGGTCTTTTTCA-TATTTGACTTACGGTTTAATTCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAA-TCT
** ** * * * **
5172858 CATCGCTTTT-ATTCCCTGTCTCATGATTTAATCCTGATCA
65 GGTCG-TTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * * ** * * * * *
5172898 TTTTTATTTTTTTGATTCATGATTTAATCCTTGTTGTTCTCATTTTCTGACTCGTGATTTAATTT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAA-TC
* * * * * * **
5172963 TGGTTGTTTTCGTTATCTAAGACAC--GGTCTAATCCCT-CTCA
64 TGGTCGTTTTCATTTTCT--GACTCGTGGTTTAAT-CCTGATTG
* * * * **
5173004 TTTTCATTTTCT-A-AC-----TT-A---TGGT--TTTT-ATTTTCTGACTCGTGGTTTTTTCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT-
* * * * * **
5173055 GGTCATTTTCGTTTTCTGACTCATAGTTTAAT-CTCAATCA
65 GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
* * * * * * *
5173095 TTTTTATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACT-AGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTC-ATTTTCATTTTTTGACTCA-TGGTTTAAT-
* * * * * *
5173159 CTGGTAGTTTTCATTTTTTGACTTGTAGTTTAAT-CTGGTTCA
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATT-G
* * * * * * * *
5173201 TTTTCATTTTCTGACTCATGGCTTAAT-CAGGATTATTTTCATTTTATGACTCACGGTTTAACCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG-TCATTTTCATTTTTTGACTCATGGTTTAATC-
* * * *
5173265 TAGTCATTTTCATTTTTTAACTCGTGGTTTAATCCCT-ATCAT-
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAAT-CCTGAT--TG
* * * *** * * * * ** *
5173307 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCGTTTTTATTTTCTGAGTTGTGGTTGAATCA
1 TTTTCATTTTTTGACT-CGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATC-
* * * * * *
5173371 TGGTCATTTTTATTTTTTGATTTGTGATTTAATCCTTG-TTG
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCC-TGATTG
* * * * * *
5173412 TTTTCATTTTCTGACTCGTGATTTAAT-CTCAGTCGTTGTT-ATTTCTTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATT-TTCATTTTTTGACTCATGGTTTAAT-
* * * * * *
5173475 CCGATTGTTTTCA-TTTCTTAACTCGTGATTTAAAT-CTAATTG
63 CTGGTCGTTTTCATTTTC-TGACTCGTGGTTT-AATCCTGATTG
* * * *
5173517 TATTCATTTTTTGACTCATGGTTT-ATCCTGATCATTTTCATTTTTTGACTCATGGTTTCATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT-
* * *
5173581 GGTCATTTTCATTTTTTGACTCGCGGTTTAAT-CTCGATCT-
65 GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GAT-TG
** * * * * ** *
5173621 TTTTTGTTTTCTAACTCGTAGTTTAATAC-GGATCATTTTCATTTTTTGACTCACAGTTGAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG-TCATTTTCATTTTTTGACTCATGGTTTAAT-C
* * * * * * *
5173685 CGATCATTTTCATTTTTTAACTCGTGATTTAAT-TTCGATCAT-
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GAT--TG
* * * ** * * ** * * * *
5173727 TTTTCATTCTCTAACAT-GTGAATTAGT-TTCGGTGGTTTTGATTTTTTGACTCAT-ATTTATTG
1 TTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATC
* * * * **
5173789 TCAGTAGTTTTCATTTTTTGACAT-GTGATTTAAGAT-C-GATCA
64 T-GGTCGTTTTCATTTTCTGAC-TCGTGGTTT-A-ATCCTGATTG
* ** * * * *
5173831 TTTTCGTTTCTCCGACTCATGATTTAAT-CTCGATCATTTTCATTTTTTGACTCACGGTTTAATC
1 TTTTCATTT-TTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAAT-
** * * * * * *
5173895 CTAATCATTTTAATTTTTTGACTCATGGTTTCATCCCT--TTT
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAAT-CCTGATTG
** * * * ** * * * *
5173936 TTTTTGTTTTCTGACTCATGATTTAATTTTGGTCTTTTTCATTTTTTGACTTACGGTTTAATTCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAA-TCT
** ** * * **
5174001 CATCGCTTTT-ATTCCCTGACTCGAGATTTAATCCT-AGTCA
65 GGTCG-TTTTCATTTTCTGACTCGTGGTTTAATCCTGA-TTG
* * * * ** * * * * *
5174041 TTTTCATTTTTTTGATTCATGATTT-ATCCTTGTTGTTCTCATTTTCTAACTCATGATTTAATTT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAA-TC
* * * * * * * * **
5174105 TGGTTGTTTTCGTTATCTAAGACAC--AGTCTAGTCCCT-CTCA
64 TGGTCGTTTTCATTTTCT--GACTCGTGGTTTAAT-CCTGATTG
* * * * *
5174146 TTTTCATTTCTGACTTATGATTTTCAT-TTTCTGACTCGTGATTTTTTCTCGATCATTTTCATTT
1 TTTTCA-TT-T---TT-TGA--CTCGTGGTT-T-AATCCTG----------G-TCATTTTCATTT
* * * * * *
5174210 TTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCG
45 TTTGACTCATGGTTTAATCT-GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * ** **
5174271 TTTTTCATTTTTTGACTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTGGTTTAATCT
1 -TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT
* * * * * *
5174336 AGCTCATTTTCATTTTCTGACTCATGGCTTAAT-CAGAATTA
65 -GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTG-ATTG
* ** * * *
5174377 TTATCATTTTTTGACTCACGGTTTAA-CCATAGTCATTTTCATTTTTTGACTCGTGGTCTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCC-TGGTCATTTTCATTTTTTGACTCATGGTTTAATC-
* *
5174441 TGGTCGTTTTTCATTTTTTGACTCGTGGTTGAATCCCT-ATCAT-
64 TGGTCG-TTTTCATTTTCTGACTCGTGGTTTAAT-CCTGAT--TG
* * * *** * * ** *
5174484 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCGTTTTCATTTTCTGACTTGTGGTTGAATCC
1 TTTTCATTTTTTGACT-CGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-C
* * * *
5174548 TGGTCATTTTCATTTTTTGATTCGTGATTTAATCCTTG-TTG
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCC-TGATTG
* * * * ** * *
5174589 TTTTTATTTTCTGACTCGTGATTTAAT-CTCAGTTGTTTTCATTTCTTGACTCATGATTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAAT-C
* * * * *
5174653 CGATTGTTTTCA-TTTCTTAACTCGTGATTTAAATCC-GATTG
64 TGGTCGTTTTCATTTTC-TGACTCGTGGTTT-AATCCTGATTG
* ** * * *
5174694 TATTCATTTTTTGACTCAAGGTTTAAT-CTCGGTCGTTTTCATTTTCTGACTCACGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATCT
* * * * * * * **
5174758 CTGTC-TTTTCTGTTTTCTAACTCGTAGTTTAATACGGGTCA
65 -GGTCGTTTTC-ATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * * * *
5174799 TTTTCATTTTTTGACTCATAGTTTAATCCCAATCCCGATCATTTTTATTTTTTGACTAACGATTT
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CC--T---GGTCATTTTCATTTTTTGACTCATGGTTT
* * * *
5174864 AATCTTGAT-ATTTTCATTTTTTGACTCGTGGTTTAAT-CTCGGTTG
60 AATC-TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
** * * * ** ** * * * * *
5174909 TTTTTGTTTTCTGACTCATGATTTAATTTTGGTTTTTTTTATTTTTTTAATAACGGTTTAATTCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAA-T-C
*** * ** * * **
5174974 CATTGGTTTT-ATTCCCTGACTCATGATTTAATCCTTG-TCA
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCC-TGATTG
* * ** ** * *
5175014 TTTTCATTTTTCCT-ATTCGTGATTTAATCCTTATTGTTTTCATTTTCTT-ACTCGTGATTTAAT
1 TTTTCATTTTT--TGACTCGTGGTTTAATCCTGGTCATTTTCATTTT-TTGACTCATGGTTTAA-
* * * * ** * * **
5175077 TTTGGTTGTTTTCATTATCTAAGACAC--AATCTAATCCCT-CTCA
62 TCTGGTCGTTTTCATTTTCT--GACTCGTGGTTTAAT-CCTGATTG
* * * **
5175120 TTTTC-TTTGTTTGA--C-----TT-A---TGAT--TTTTCATTTTCTGACTCGTGGTTTTTTCT
1 TTTTCATTT-TTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT
** * * * * * **
5175171 CAATCATTTTCATTTTTTGACAC--AGTTTAAT-CTCAATCA
65 -GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
* * * * * * ** *
5175210 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTCTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTC-ATTTTCATTTTTTGACTCATGGTTTAAT-C
* * * ** * **
5175275 TGGTTGTTTTTATTTTTTGACTTATGGTTTAAT-CTGGCTCA
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
* * * * * *
5175316 TTTTTATTTTCTGACTCATGGCTTAAT-CAGGATTC-TTTTTATTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG--TCATTTTCATTTTTTGACTCATGGTTTAATC
* * * * * * *
5175379 ATAGTC-ATTTCATTTTTTGACTCGTGGTCTAATCATGGTCG
64 -TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * ** *
5175420 TTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGATTGGTAGTTTAAT
1 -TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGGTCA-TTTTCATTTTTTGACTCATGGTTTAAT
*** * * **
5175484 CCCAATCGTTTTCATTTTTTGACTTGTGGTTTAATCCTGATCA
63 -CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * ** *
5175527 TTTTCATTTTCTGACTTGTGGTTTAGTCTTGGTTGTTTTCATTTTTTGACTCATGGTTTAATCAC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATC-T
* * ** * **
5175592 CGTTGTTTTCATTTT-TCGA-TGCACGGTTTAATCGC-GGTCA
65 GGTCGTTTTCATTTTCT-GACT-CGTGGTTTAATC-CTGATTG
** * * * *
5175632 TTTTCATTTTTTTGACTTATGGTTTAAT-CTCGGTCGTTCTTTATTTTTTGACTCGTGTTTTAAT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GGTCATT-TTCATTTTTTGACTCATGGTTTAAT
* * * * **
5175696 CACGATCGTTTTCA-TTTCTTGACTCGTGATTTGAA-CCCGATCA
63 C-TGGTCGTTTTCATTTTC-TGACTCGTGGTTT-AATCCTGATTG
** * *** *
5175739 CATTCATTTTTTGACTCATGGTTTAATCCCAATCATTTT--TCTTTT---TCAT--TTT--T-TG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTG
* * * * * * **
5175794 ATCGTTTTCATTTTCTAACTCATAGCTTAATTCCAG-TCA
66 GTCGTTTTCATTTTCTGACTCGTGGTTTAA-TCCTGATTG
* * ** * * * * *
5175833 TTTTCATTTTCTGACTCATGGTTTAATCCTATTAATTTTTCCTTTTCTAAC-CGGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCA-TTTTCATTTTTTGACTC-ATGGTTTAAT-
* * * *
5175897 CCGGTCGTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGGTTG
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
* * ** *
5175939 TTTTCATTTTTTGACTCATGGTTTAAACCCCGTCATTTTCATTTTTTGACTCACGGTTTAAT-TG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTG
* * * ** * **
5176003 CAGACATTTTCATTTTTTTGACTTATGGTTTAAT-CTCGGTCA
66 --GTCGTTTTCA-TTTTCTGACTCGTGGTTTAATCCT-GATTG
* * * * * * *
5176045 TTCTTCATTTTTTGACTCGTGTTTTAATCATGGTCGTTTTCATTTCTTGACTCGTGATTTGAACC
1 TT-TTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTT-AATC
* * ** * ** * *
5176110 CGATCGCATTCATTTTTTGACTCAAGGTTTAATCCTAATCATTTTTCT
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCC---TGA---TT-G
** * * * * * ** **
5176158 TTTTCATTTTTTGA-TCGTTTTCATTTTCTAACTCGTAGCTTAATTCCAGTCATTT---TCATTT
1 TTTTCATTTTTTGACTCG---T--GGTT-TAA-TCCT-GGTCATTTTCA-TTTTTTGACTCATGG
* * * * * * *
5176219 TTTGACTCATGGTTTAATCCCGTTCATTTTTCTTTTTCTGACTGGTGGTTCAATCCCG-GTC
57 TTT-AATC-TGG-----T--CG-----TTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * * * * * * * *
5176280 ATTTCTATTTTCTGACACATGGTTTAATCTTAGTCGTTTTTATTTTTTGGCTCGTGCTTTAATCT
1 TTTTC-ATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCT
* * * *
5176345 AGGTCATTTTCTTTTTCTGACTCAAT-GTTTAATCC-CACTTG
65 -GGTCGTTTTCATTTTCTGACTC-GTGGTTTAATCCTGA-TTG
* * * * ** **
5176386 TTTTCATTTTCTGACTCGTGGTTTAAT-GTAGGTTCTTTTTCATTTTTTAACTTGTACTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GG-TCATTTTCATTTTTTGACTCATGGTTTAAT-
** * * * * * * **
5176450 CCAGTCATTTTCA-TTTCTTGACTCATGATTCAAAT--GGGTCA
63 CTGGTCGTTTTCATTTTC-TGACTCGTGGTT-TAATCCTGATTG
** * * * *
5176491 CATTCATTTTCTAACTCGTGGTTT-ATTCTCG--ATTATT--TTTTTT---TCAT--TTT--TC-
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATT-TTCATTTTTTGACTCATGGTTTAATCT
* * * ** *
5176543 GATTGTTTTCATTTTCTGACTCGTGATTTAATCCCAATCG
65 GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * ** * *
5176583 TTTTCATTTTCTGACTCAAT-GTTTAAT-CTCGGTTGTTTTCTTTTTTTTAGCT-AGTGGTTTAA
1 TTTTCATTTTTTGACTC-GTGGTTTAATCCT-GGTCATTTTCATTTTTTGA-CTCA-TGGTTTAA
* * * * *
5176645 TCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCTTATCG
62 TCT-GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * * * *
5176689 TTTTTATTTTTTGACTAGTGATTTAAT-CTAGTCACTTTTTA-TTTTTGACTCGTGATTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCA-TTTTCATTTTTTGACTCATGGTTTAATCT
* * * * * *
5176752 CAGTCGTTGTC-GTTTCTTGACTCATGATTTAATCCCGATTG
65 -GGTCGTTTTCATTTTC-TGACTCGTGGTTTAATCCTGATTG
* * * * * ** *
5176793 TTTTTATTTCTTAACTCGTGATTTAAATCC-GATTGTATTCATTTTTTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTT-AATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-C
* * ** * * *
5176857 TGGTCGTTTTCATTTTTTTACTAATGGTTTCATCTTGGTTG
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * ** * * * *
5176898 TTTTCATTTTTTGACTCGCGATTTAAT-CTCGGTCTTTTTGGTTTTGTAACTCGTAGTTTAATAC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAAT-C
* * * *** * **
5176962 GGGTCATTTTCATTTTTTGACTCACAGTTTAATCCCGATCA
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* * * * * * * *
5177003 TTTTTATTTTTTAACTCGTGATTTAAT-TTCAGTCATTTTTCATTCTCTGA--CATGTGATTTAG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCA-TTTTCATTTTTTGACTCATG-G-TTTAA
* * * * * * * * *
5177065 TTTCGATGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAGTAG
62 TCT-GGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGA-TTG
** * * ** *
5177109 TTTTCATTTTTTGACAT-GTCATTTAAT-ATCGATCATTTTCATTTCTCCGACTCATGATTTAAT
1 TTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GGTCATTTTCATTT-TTTGACTCATGGTTTAAT
* * * * * * **
5177172 CACGATCATTTTCATTTTTTTGACAC--AGTTTAATCCTGATCA
63 C-TGGTCGTTTTCA-TTTTCTGACTCGTGGTTTAATCCTGATTG
* ** ** * * *
5177214 TTTTCATTTTTTGACTTGTGGTTTAAT-CTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAA-TC
* * * ** * * **
5177278 TGTTCTTTTTCATTTTTTGACTTATGGTGTAATTCC-CATCA
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAA-TCCTGATTG
** * * * * * * *
5177319 TTTT--TTTCCCTGACTCATGATTTAATCCTAGTCATTTTCATTTTTCTCATTCGTGATTTAATC
1 TTTTCATTT-TTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTT-TGACTCATGGTTTAAT-
* * * *
5177382 CT--T-GTTCTCATTTTCTGACTCGTGATTTAATTCTGGTTG
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
** * * * * *
5177421 TTTTCATTATCTAAGACAC--GGTCTAATCCCT-CTTATTTTCAATTTTTGA--C-----TT-A-
1 TTTTCATT-T-TTTGACTCGTGGTTTAAT-CCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT
* * * ** * **
5177474 -TGAT--TTTTCATTTTCTGACTCAT-TTTTTTTTCTCGATCA
63 CTGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCT-GATTG
* * * * *
5177513 TTTTCATTTTCTT-ACTCATAGTTTAAT-CTCGATCATTTTCATTTTCTGACCCATGGTTTAATC
1 TTTTCATTTT-TTGACTCGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAAT-
* * * * *
5177576 CTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATCCT-AGTTG
63 CTGGTC-GTTTTCATTTTCTGACTCGTGGTTTAATCCTGA-TTG
* * *
5177619 TTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCAAGGTTTTATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG-TCATTTTCATTTTTTGACTCATGGTTTAATC-
* * * * * * *
5177683 TAGTC-ATTTCATTTTTTGACTCGTGATCTAATCATGGTCAT-
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGAT--TG
* * **
5177724 TTTTCATTTTTTGACTCGTGGTTTAATCCAT-ATCATTTT--TTTTATGGGT-A--GTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCC-TGGTCATTTTCATTTTTTGACTCATGGTTTAAT-C
*** * *
5177783 CAATCATTTTCATTTTCTGACTTGTGGTTTAATCCTGATTG
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
* ** ** * ** *
5177824 TTTTCATTTTCTGACTTATGGCGTAATCTTGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT--C
* * * ** * * **
5177889 T-GTCATTTTCATTTTTTGACACACGATTTAATCGC-AATCA
64 TGGTCGTTTTCATTTTCTGACTCGTGGTTTAATC-CTGATTG
** * * *
5177929 TTTTCATTTTTTTGACTTTTGGTTTAAT-CTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTAAT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GGTCATT-TTCATTTTTTGACTCATGGTTTAAT
* * * * *
5177993 CACGATCGTTTTCA-TTTCTTAACTCGTGATTTGAA--CTCGATCG
63 C-TGGTCGTTTTCATTTTC-TGACTCGTGGTTT-AATCCT-GATTG
** *
5178036 CATTCATTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC
5178064 TCAATCATTT
Statistics
Matches: 4459, Mismatches: 1212, Indels: 873
0.68 0.19 0.13
Matches are distributed among these distances:
88 2 0.00
89 6 0.00
90 34 0.01
91 85 0.02
92 110 0.02
93 9 0.00
94 61 0.01
95 18 0.00
96 7 0.00
97 10 0.00
98 10 0.00
99 7 0.00
100 51 0.01
101 35 0.01
102 115 0.03
103 137 0.03
104 465 0.10
105 1430 0.32
106 1270 0.28
107 284 0.06
108 25 0.01
109 5 0.00
110 48 0.01
111 39 0.01
112 21 0.00
113 2 0.00
114 4 0.00
115 4 0.00
116 8 0.00
117 24 0.01
118 16 0.00
119 10 0.00
120 6 0.00
121 3 0.00
122 4 0.00
123 14 0.00
124 8 0.00
125 45 0.01
126 6 0.00
130 21 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (104 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTG
GTCGTTTTCATTTTCTGACTCGTGGTTTAATCCTGATTG
Found at i:5172784 original size:35 final size:35
Alignment explanation
Indices: 5171849--5172784 Score: 451
Period size: 35 Copynumber: 26.7 Consensus size: 35
5171839 TTGACTTATG
* * * *
5171849 ATTTTCATTTTCTGACTCGTGATTT-TTTCTCGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC
* * * *
5171884 ATTTTCATTTTCTGACTCATAGTTTAATCTTGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * *
5171919 ATTTTCATTTTCTGACCCATGGTTTAATCCTGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * * *
5171954 GTTTTTCTTTTTTTGACTAGTGGTTTAATCCTGGT-
1 -ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* *
5171989 AGTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTC
1 A-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC
* * ** *
5172025 ATTTTCATTTTTTGACTCATGGCTTAATCAAGATT
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
**
5172060 ATTTTCATTTTTTGACTCACGGTTTAA-CCAT-AGTC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCC-TGA-TC
** * * *
5172095 ATTTTCATTTTTTGACTTATGGTCTAATCATGGTC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* **
5172130 GTTTTTCATTTTTTGACTCGTGGTTTAATCCTTTTC
1 -ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * **
5172166 ATTTT--TTTTTT-A-TGGGTAGTTTAATCCCAAAT-
1 ATTTTCATTTTTTGACT-CGTGGTTTAAT-CCTGATC
* * * * *
5172198 GTTTTCATTTTCTGACTTGTGGTTGAATCCTGGTC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * * * *
5172233 GTTTTCATTTTTTGATTCGTGATTTAATCCTTATT
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * *
5172268 GTTTTCATTTTCTGACTCGTGATTTAATCTCTG-TC
1 ATTTTCATTTTTTGACTCGTGGTTTAATC-CTGATC
* * * * * *
5172303 ATTGTT-ATTTCTTGACTCATGATTTAATCTTAATT
1 ATT-TTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * * * * *
5172338 TTTTTCATTTCTTAACTAGTGATTTAAATCC-GATT
1 ATTTTCATTTTTTGACTCGTGGTTT-AATCCTGATC
* * *
5172373 GTATTCATTTTTTGACTCGTGGTTTAATCCTGGTC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * * *
5172408 ATTTTCATTTTTTGACTCATGGTTTCAT-CTCGGTT
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC
* * *
5172443 GTTTTCATTTTCTGACTCGCGGTTTAATCTCTG-TC
1 ATTTTCATTTTTTGACTCGTGGTTTAATC-CTGATC
** * * * * * *
5172478 ATTTTGGTTTTCTAACTCGTAGTTTAATACGGGTC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
*** * *
5172513 ATTTTCATTTTTTGACTCACAGTTTAGTCCCGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
* * ** * *
5172548 ATTTTTATTTTTTAACTAATGATTTAAT-TTCGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC
* * * * * *
5172583 ATTTTTCATTCTCTGACAT-GTGATTTAGT-TTCGATG
1 A-TTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GATC
* * * * * ** *
5172619 GTTTTGATTTTATGACTCATGATTTGTTCTTAGA--
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC
** *
5172653 AGTTTTCATTTTTTGACAT-GTTATTTAAT-ATCGATC
1 A-TTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GATC
** * ** *
5172689 ATTTTTGTTTCTCTGACTTATGATTTAAT-CTCGATC
1 ATTTTCATTT-TTTGACTCGTGGTTTAATCCT-GATC
* **
5172725 GTTTTCATTTTTTGACTCACGGTTTAATCCTGATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
5172760 ATTTTCATTTTTTGACTCGTGGTTT
1 ATTTTCATTTTTTGACTCGTGGTTT
5172785 CATCTTTTTT
Statistics
Matches: 692, Mismatches: 169, Indels: 80
0.74 0.18 0.09
Matches are distributed among these distances:
31 1 0.00
32 14 0.02
33 9 0.01
34 28 0.04
35 509 0.74
36 128 0.18
37 3 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCGTGGTTTAATCCTGATC
Found at i:5173033 original size:21 final size:21
Alignment explanation
Indices: 5173004--5173050 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
5172994 ATCCCTCTCA
* *
5173004 TTTTCATTTTCTAACTTATGG
1 TTTTTATTTTCTAACTCATGG
* *
5173025 TTTTTATTTTCTGACTCGTGG
1 TTTTTATTTTCTAACTCATGG
5173046 TTTTT
1 TTTTT
5173051 TCTCGGTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.62
Consensus pattern (21 bp):
TTTTTATTTTCTAACTCATGG
Found at i:5173566 original size:139 final size:140
Alignment explanation
Indices: 5173412--5173734 Score: 325
Period size: 139 Copynumber: 2.3 Consensus size: 140
5173402 ATCCTTGTTG
* * *
5173412 TTTTCATTTTCTGACTCGTGATTTAATCTCAGTCGTTGTT-ATTTCTTGACTCATGATTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCTCAGTCATT-TTCATTTCTTGACTCACGATTTAATCC
* ** **
5173476 CGAT-TGTTTTCATTTCTTAACTCGT-GATTTAA-ATCTAATTGTATTCATTTTTTGACTCATGG
65 CGATCTGTTTTCATTTC-TAACTCGTAG-TTTAATA-CGAATCATATTCATTTTTTGACTCACAG
* *
5173538 TT-TATCCTGATCA
127 TTGAATCCCGATCA
* * * * * * * *
5173551 TTTTCATTTTTTGACTCATGGTTTCATCTCGGTCATTTTCATTTTTTGACTCGCGGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGATTTAATCTCAGTCATTTTCATTTCTTGACTCACGATTTAATCCC
* ** * *
5173616 GATCTTTTTTGTTTTCTAACTCGTAGTTTAATACGGATCATTTTCATTTTTTGACTCACAGTTGA
66 GATCTGTTTTCATTTCTAACTCGTAGTTTAATACGAATCATATTCATTTTTTGACTCACAGTTGA
5173681 ATCCCGATCA
131 ATCCCGATCA
* *
5173691 TTTTCATTTTTTAACTCGTGATTTAATTTC-GATCATTTTTCATT
1 TTTTCATTTTTTGACTCGTGATTTAATCTCAG-TCA-TTTTCATT
5173735 CTCTAACATG
Statistics
Matches: 149, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
138 2 0.01
139 91 0.61
140 48 0.32
141 8 0.05
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.50
Consensus pattern (140 bp):
TTTTCATTTTTTGACTCGTGATTTAATCTCAGTCATTTTCATTTCTTGACTCACGATTTAATCCC
GATCTGTTTTCATTTCTAACTCGTAGTTTAATACGAATCATATTCATTTTTTGACTCACAGTTGA
ATCCCGATCA
Found at i:5173615 original size:35 final size:35
Alignment explanation
Indices: 5173025--5173925 Score: 409
Period size: 35 Copynumber: 25.7 Consensus size: 35
5173015 TAACTTATGG
* * ** *
5173025 TTTTTATTTTCTGACTCGTGGTTTTTTCTCGGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * * *
5173060 TTTTCGTTTTCTGACTCATAGTTTAATCTCAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * * *
5173095 TTTTTATTTTCTGACCCATGGTTTAATC-CTGATCGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GATC-A
* * *
5173131 TTTTCTTTTTTTGACTAGTGGTTTAATC-CTGGT-A
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GATCA
* * * *
5173165 GTTTTCATTTTTTGACTTGTAGTTTAATCTGGTTCA
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * ** *
5173201 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* ** * *
5173236 TTTTCATTTTATGACTCACGGTTTAACCATAG-TCA
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCGATCA
* * *
5173271 TTTTCATTTTTTAACTCGTGGTTTAATCCCTATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * * * *
5173306 TTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCG
1 -TTTTCATTTTTTGACT-CGTGGTTTAATCTCGATCA
* * * * * *
5173342 TTTTTATTTTCTGAGTTGTGGTTGAATCAT-GGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCGATCA
* * * * * **
5173377 TTTTTATTTTTTGATTTGTGATTTAATCCTTG-TTG
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CTCGATCA
* * *
5173412 TTTTCATTTTCTGACTCGTGATTTAATCTC-AGTCG
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGA-TCA
* * * * **
5173447 TTGTT-ATTTCTTGACTCATGATTTAATCCCGATTG
1 TT-TTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * * **
5173482 TTTTCATTTCTTAACTCGTGATTTAAATCT-AATTG
1 TTTTCATTTTTTGACTCGTGGTTT-AATCTCGATCA
* *
5173517 TATTCATTTTTTGACTCATGGTTT-ATC-CTGATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GATCA
* * *
5173551 TTTTCATTTTTTGACTCATGGTTTCATCTCGGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* *
5173586 TTTTCATTTTTTGACTCGCGGTTTAATCTCGATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
** * * * *
5173621 TTTTTGTTTTCTAACTCGTAGTTTAATAC-GGATCA
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CTCGATCA
*** * *
5173656 TTTTCATTTTTTGACTCACAGTTGAATCCCGATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * *
5173691 TTTTCATTTTTTAACTCGTGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
* * * ** * * * **
5173726 TTTTTCATTCTCTAACAT-GTGAATTAGTTTCGGTGG
1 -TTTTCATTTTTTGAC-TCGTGGTTTAATCTCGATCA
* * * * *
5173762 TTTTGATTTTTTGACTCAT-ATTTATTGTC-AGT-A
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCGA-TCA
* **
5173795 GTTTTCATTTTTTGACAT-GTGATTTAAGATCGATCA
1 -TTTTCATTTTTTGAC-TCGTGGTTTAATCTCGATCA
* ** * *
5173831 TTTTCGTTTCTCCGACTCATGATTTAATCTCGATCA
1 TTTTCATTT-TTTGACTCGTGGTTTAATCTCGATCA
** *
5173867 TTTTCATTTTTTGACTCACGGTTTAATC-CTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-GATCA
* *
5173902 TTTTAATTTTTTGACTCATGGTTT
1 TTTTCATTTTTTGACTCGTGGTTT
5173926 CATCCCTTTT
Statistics
Matches: 667, Mismatches: 162, Indels: 74
0.74 0.18 0.08
Matches are distributed among these distances:
33 3 0.00
34 56 0.08
35 485 0.73
36 122 0.18
37 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCGATCA
Found at i:5174178 original size:21 final size:20
Alignment explanation
Indices: 5174145--5174190 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
5174135 AGTCCCTCTC
*
5174145 ATTTTCATTTCTGACTTATG
1 ATTTTCATTTCTGACTCATG
*
5174165 ATTTTCATTTTCTGACTCGTG
1 ATTTTCA-TTTCTGACTCATG
5174186 ATTTT
1 ATTTT
5174191 TTCTCGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.17, C:0.15, G:0.11, T:0.57
Consensus pattern (20 bp):
ATTTTCATTTCTGACTCATG
Found at i:5174204 original size:35 final size:35
Alignment explanation
Indices: 5174165--5174935 Score: 224
Period size: 35 Copynumber: 21.8 Consensus size: 35
5174155 CTGACTTATG
* **
5174165 ATTTTCATTTTCTGACTCGT-GATTTTTTCTCGATC
1 ATTTTCATTTTCTGACTCATAG-TTTAATCTCGATC
*
5174200 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
* *
5174235 ATTTTCATTTTCTGACCCATGGTTTAATC-CTGATC
1 ATTTTCATTTTCTGACTCATAGTTTAATCTC-GATC
* * ** * * *
5174270 GTTTTTCATTTTTTGACTGGTGGTTTAATC-CTAGTT
1 -ATTTTCATTTTCTGACTCATAGTTTAATCTCGA-TC
* * ** * * *
5174306 GTTTTCATTTTTTGACTTGTGGTTTAATCTAGCTC
1 ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
* * * *
5174341 ATTTTCATTTTCTGACTCATGGCTTAATC-AGAATT
1 ATTTTCATTTTCTGACTCATAGTTTAATCTCG-ATC
* * ** * *
5174376 ATTATCATTTTTTGACTCACGGTTTAACCATAG-TC
1 ATTTTCATTTTCTGACTCATAGTTTAATC-TCGATC
* * * * *
5174411 ATTTTCATTTTTTGACTCGTGGTCTAATCAT-GGTC
1 ATTTTCATTTTCTGACTCATAGTTTAATC-TCGATC
* * * * * * *
5174446 GTTTTTCATTTTTTGACTCGTGGTTGAATCCCTATC
1 -ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
* * ** * *
5174482 ATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATC
1 A-TTTTCATTTTCTGACT-CATAGTTTAATCTCGATC
* ** * * *
5174518 GTTTTCATTTTCTGACTTGTGGTTGAATC-CTGGTC
1 ATTTTCATTTTCTGACTCATAGTTTAATCTC-GATC
* * * * *
5174553 ATTTTCATTTTTTGATTCGT-GATTTAATCCTTG-TT
1 ATTTTCATTTTCTGACTCATAG-TTTAAT-CTCGATC
* * * *
5174588 GTTTTTATTTTCTGACTCGT-GATTTAATCTC-AGTT
1 ATTTTCATTTTCTGACTCATAG-TTTAATCTCGA-TC
* * *
5174623 GTTTTCA-TTTCTTGACTCAT-GATTTAATCCCGATT
1 ATTTTCATTTTC-TGACTCATAG-TTTAATCTCGATC
* * * *
5174658 GTTTTCA-TTTCTTAACTCGT-GATTTAAATC-CGATT
1 ATTTTCATTTTC-TGACTCATAG-TTT-AATCTCGATC
* * * *
5174693 GTATTCATTTTTTGACTCA-AGGTTTAATCTCGGTC
1 ATTTTCATTTTCTGACTCATA-GTTTAATCTCGATC
* **
5174728 GTTTTCATTTTCTGACTCACGGTTTAATCTCTG-TC
1 ATTTTCATTTTCTGACTCATAGTTTAATCTC-GATC
* * * * *
5174763 -TTTTCTGTTTTCTAACTCGTAGTTTAATAC-GGGTC
1 ATTTTC-ATTTTCTGACTCATAGTTTAAT-CTCGATC
*
5174798 ATTTTCATTTTTTGACTCATAGTTTAATCCCAATCCCGATC
1 ATTTTCATTTTCTGACTCATAGTTTAAT--C--T--CGATC
* * *
5174839 ATTTTTATTTTTTGACT-A-ACGATTTAATCTTGAT-
1 ATTTTCATTTTCTGACTCATA-G-TTTAATCTCGATC
* * * * *
5174873 ATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTT
1 ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
* **
5174908 GTTTTTGTTTTCTGACTCAT-GATTTAAT
1 ATTTTCATTTTCTGACTCATAG-TTTAAT
5174936 TTTGGTTTTT
Statistics
Matches: 582, Mismatches: 109, Indels: 90
0.75 0.14 0.12
Matches are distributed among these distances:
34 49 0.08
35 399 0.69
36 102 0.18
37 3 0.01
39 2 0.00
40 2 0.00
41 25 0.04
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.51
Consensus pattern (35 bp):
ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
Found at i:5174282 original size:70 final size:69
Alignment explanation
Indices: 5174166--5174901 Score: 364
Period size: 70 Copynumber: 10.4 Consensus size: 69
5174156 TGACTTATGA
* * * *
5174166 TTTTCATTTTCTGACTCGTGATTT-TTTCTCGATCATTTTCATTTTTTGACTCATAGTTTAATCT
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT-GATC-TTTTCATTTTTTGACTCGTAGTTTAATCT
*
5174230 CGATCA
64 CGATCG
* * * *
5174236 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCATTTTTTGACTGGTGGTTTAATC-
1 TTTTCATTTTCTGACTCGTGGTTTAATCCTGATC--TTTTCATTTTTTGACTCGTAGTTTAATCT
* *
5174300 CTAGTTG
64 CGA-TCG
* * * * * * *
5174307 TTTTCATTTTTTGACTTGTGGTTTAAT-CTAGCTCATTTTCATTTTCTGACTCATGGCTTAATC-
1 TTTTCATTTTCTGACTCGTGGTTTAATCCT-GATC-TTTTCATTTTTTGACTCGTAGTTTAATCT
* **
5174370 AGAATTA
64 CG-ATCG
* * ** * *
5174377 TTATCATTTTTTGACTCACGGTTTAA-CCAT-AGTCATTTTCATTTTTTGACTCGTGGTCTAATC
1 TTTTCATTTTCTGACTCGTGGTTTAATCC-TGA-TC-TTTTCATTTTTTGACTCGTAGTTTAATC
*
5174440 AT-GGTCG
63 -TCGATCG
* * * *
5174447 TTTTTCATTTTTTGACTCGTGGTTGAATCCCT-ATCATTTTTCTTTTTTTGA-TGGGTAGTTTAA
1 -TTTTCATTTTCTGACTCGTGGTTTAAT-CCTGATC--TTTTCATTTTTTGACT-CGTAGTTTAA
* *
5174510 TCCCAATCG
61 TCTCGATCG
* * * *
5174519 TTTTCATTTTCTGACTTGTGGTTGAATCCTGGTCATTTTCATTTTTTGATTCGT-GATTTAATCC
1 TTTTCATTTTCTGACTCGTGGTTTAATCCTGATC-TTTTCATTTTTTGACTCGTAG-TTTAAT-C
* *
5174583 TTG-TTG
63 TCGATCG
* * * * * * * *
5174589 TTTTTATTTTCTGACTCGTGATTTAATCTCAGTTGTTTTCATTTCTTGACTCAT-GATTTAATCC
1 TTTTCATTTTCTGACTCGTGGTTTAATC-CTGATCTTTTCATTTTTTGACTCGTAG-TTTAATCT
*
5174653 CGATTG
64 CGATCG
* * *
5174659 TTTTCA-TTTCTTAACTCGTGATTTAAATCC-GAT-TGTATTCATTTTTTGACTC-AAGGTTTAA
1 TTTTCATTTTC-TGACTCGTGGTTT-AATCCTGATCT-T-TTCATTTTTTGACTCGTA-GTTTAA
*
5174720 TCTCGGTCG
61 TCTCGATCG
** *
5174729 TTTTCATTTTCTGACTCACGGTTTAATCTCTG-TCTTTTC-TGTTTTCTAACTCGTAGTTTAATA
1 TTTTCATTTTCTGACTCGTGGTTTAATC-CTGATCTTTTCAT-TTTT-TGACTCGTAGTTTAAT-
* * *
5174792 C-GGGTCA
62 CTCGATCG
* * * *
5174799 TTTTCATTTTTTGACTCATAGTTTAATCCCAATCCCGATCATTTTTATTTTTTGACTAACG-A-T
1 TTTTCATTTTCTGACTCGTGGTTTAAT-CC--T---GATC-TTTTCATTTTTTGACT--CGTAGT
* *
5174862 TTAATCTTGAT-A
57 TTAATCTCGATCG
*
5174874 TTTTCATTTTTTGACTCGTGGTTTAATC
1 TTTTCATTTTCTGACTCGTGGTTTAATC
5174902 TCGGTTGTTT
Statistics
Matches: 522, Mismatches: 96, Indels: 92
0.74 0.14 0.13
Matches are distributed among these distances:
68 2 0.00
69 21 0.04
70 285 0.55
71 129 0.25
72 28 0.05
73 2 0.00
74 1 0.00
75 28 0.05
76 14 0.03
77 9 0.02
78 3 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (69 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCCTGATCTTTTCATTTTTTGACTCGTAGTTTAATCTCG
ATCG
Found at i:5175069 original size:35 final size:36
Alignment explanation
Indices: 5174992--5175076 Score: 109
Period size: 36 Copynumber: 2.4 Consensus size: 36
5174982 TTATTCCCTG
* *
5174992 ACTCATGATTTAATCCTTGTCATTTTCATTTTTCCT
1 ACTCGTGATTTAATCCTTATCATTTTCATTTTTCCT
* ** *
5175028 ATTCGTGATTTAATCCTTATTGTTTTCA-TTTTCTT
1 ACTCGTGATTTAATCCTTATCATTTTCATTTTTCCT
5175063 ACTCGTGATTTAAT
1 ACTCGTGATTTAAT
5175077 TTTGGTTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 19 0.45
36 23 0.55
ACGTcount: A:0.20, C:0.18, G:0.08, T:0.54
Consensus pattern (36 bp):
ACTCGTGATTTAATCCTTATCATTTTCATTTTTCCT
Found at i:5175086 original size:35 final size:35
Alignment explanation
Indices: 5174859--5175092 Score: 106
Period size: 35 Copynumber: 6.7 Consensus size: 35
5174849 TTTGACTAAC
* *
5174859 GATTTAATCTT-GATATTTTCATTTT-TTGACTCGT
1 GATTTAATCTTGGTTGTTTTCATTTTCTT-ACTCGT
* * ** * *
5174893 GGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCAT
1 GATTTAATCTTGGTTGTTTTCATTTTCTTACTCGT
* * * * *
5174928 GATTTAATTTTGGTTTTTTTTATTTTTTTAATAACG-
1 GATTTAATCTTGGTTGTTTTCATTTTCTTACT--CGT
*** ** * *
5174964 G-TTTAAT-TCCCATTGGTTTT-ATTCCCTGACTCAT
1 GATTTAATCT-TGGTT-GTTTTCATTTTCTTACTCGT
** * *
5174998 GATTTAATCCTT-GTCATTTTCATTTTTCCTATTCGT
1 GATTTAAT-CTTGGTTGTTTTCA-TTTTCTTACTCGT
*
5175034 GATTTAATCCTT-ATTGTTTTCATTTTCTTACTCGT
1 GATTTAAT-CTTGGTTGTTTTCATTTTCTTACTCGT
*
5175069 GATTTAATTTTGGTTGTTTTCATT
1 GATTTAATCTTGGTTGTTTTCATT
5175093 ATCTAAGACA
Statistics
Matches: 143, Mismatches: 44, Indels: 25
0.67 0.21 0.12
Matches are distributed among these distances:
33 1 0.01
34 17 0.12
35 91 0.64
36 32 0.22
37 2 0.01
ACGTcount: A:0.18, C:0.14, G:0.12, T:0.56
Consensus pattern (35 bp):
GATTTAATCTTGGTTGTTTTCATTTTCTTACTCGT
Found at i:5175601 original size:70 final size:70
Alignment explanation
Indices: 5175210--5178465 Score: 563
Period size: 70 Copynumber: 46.2 Consensus size: 70
5175200 ATCTCAATCA
* * * * * * *
5175210 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTCTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCC
5175275 TGGTTG
65 TGGTTG
* * ** * * * * * *
5175281 TTTTTATTTTTTGACTTATGGTTTAATCTGGCTCATTTTTATTTTCTGACTCATGGCTTAAT-CA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
*
5175345 GGATTC
66 GG-TTG
* ** * *
5175351 TTTTTATTTTTTGACTCATGGTTTAAT-CATAGTCA-TTTCATTTTTTGACTCGTGGTCTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCC
*
5175414 TGGTCG
65 TGGTTG
* * * * * *
5175420 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATTGGTAGTTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCGATCA-TTTTCATTTTTTGACTCGTGGTTTAATC
*** *
5175485 CCAATCG
64 CTGGTTG
** * * * * *
5175492 TTTTCATTTTTTGACTTGTGGTTTAATCCTGATCATTTTCATTTTCTGACTTGTGGTTTAGTCTT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
5175557 GGTTG
66 GGTTG
** * **
5175562 TTTTCATTTTTTGACTCATGGTTTAATCACCG-TTGTTTTCATTTTTCGA-TGCACGGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATC-CCGATCATTTTCATTTTTTGACT-CGTGGTTTAATC
**
5175625 GC-GGTCA
64 -CTGGTTG
* * * * * *
5175632 TTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCGTTCTTTATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGATCATT-TTCATTTTTTGACTCGTGGTTTAATC
* *
5175697 AC-GATCG
64 -CTGGTTG
* * * ** *
5175704 TTTTCATTTCTTGACTCGTGATTTGAA-CCCGATCACATTCATTTTTTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAAT--
** *
5175768 CAATCATTTTTCT
63 C---C-TGGTT-G
* ** * * *
5175781 TTTTCATTTTTTGATCGTTTTCAT-TTTCTAACTCATAGCTTAATTCCAGTCATTTTCATTTTCT
1 TTTTCATTTTTTGA-C----TCATGGTT-TAA-TC-CCG-ATCATT---TTCA-TT----TTT-T
* * *
5175845 GACTCATGGTTTAATCCT-ATTAAT
48 GACTCGTGGTTTAATCCTGGTT--G
* * * * * * *
5175869 TTTTCCTTTTCTAAC-CGGTGGTTTAATCCCGGTCGTTTTCATTTTTTGACTTGTGGTTTAAT-C
1 TTTTCATTTTTTGACTC-ATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
5175932 TGGGTTG
65 T-GGTTG
* **
5175939 TTTTCATTTTTTGACTCATGGTTTAAACCCCG-TCATTTTCATTTTTTGACTCACGGTTTAAT--
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
***
5176001 TGCAGACA
65 TG--GTTG
* * * *
5176009 TTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCATTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGATCATT-TTCATTTTTTGACTCGTGGTTTAATC
* *
5176074 ATGGTCG
64 CTGGTTG
* * * *** **
5176081 TTTTCATTTCTTGACTCGTGATTTGAA-CCCGATCGCATTCATTTTTTGACTCAAGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-C
** *
5176145 TAATCATTTTTCT
64 ----C-TGGTT-G
* * * *
5176158 TTTTCATTTTTTGATCGTTTTCAT-TTTCTAA-CTCGTAGCTTAATTCCAGTCATTTTCATTTTT
1 TTTTCATTTTTTGA-C----TCATGGTT-TAATCCCG-A---TCATT---TTCA-TTT-----TT
* * *
5176221 TGACTCATGGTTTAATCC-CGTTCAT
47 TGACTCGTGGTTTAATCCTGGTT--G
** * * * * *
5176246 TTTTC-TTTTTCTGACTGGTGGTTCAATCCCGGTCA-TTTCTATTTTCTGACACATGGTTTAATC
1 TTTTCATTTTT-TGACTCATGGTTTAATCCCGATCATTTTC-ATTTTTTGACTCGTGGTTTAATC
* * *
5176309 TTAGTCG
64 CTGGTTG
* * * * ** * *
5176316 TTTTTATTTTTTGGCTCGTGCTTTAATCTAGGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTT-TGACTC-GTGGTTTAATC
***
5176379 CCACTTG
64 CTGGTTG
* * *** * * * * **
5176386 TTTTCATTTTCTGACTCGTGGTTTAATGTAGGTTCTTTTTCATTTTTTAACTTGTACTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAAT-CCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
** **
5176451 CAGTCA
65 TGGTTG
* * * * * ** * * *
5176457 TTTTCATTTCTTGACTCATGATTCAAAT--GGGTCACATTCATTTTCTAACTCGTGGTTT-ATTC
1 TTTTCATTTTTTGACTCATGGTT-TAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5176519 TCGAT-
65 TGGTTG
* ** * * *
5176524 TATT--TTTTTT---TCAT--TTT--T--CGATTGTTTTCATTTTCTGACTCGTGATTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
** *
5176578 AATCG
66 GGTTG
* * * ** * * *
5176583 TTTTCATTTTCTGACTCAAT-GTTTAATCTCGGTTGTTTTCTTTTTTTTAGCTAGTGGTTTAAT-
1 TTTTCATTTTTTGACTC-ATGGTTTAATCCCGATCATTTTCATTTTTTGA-CTCGTGGTTTAATC
* **
5176646 CTCGATCA
64 CT-GGTTG
* ** * * * *
5176654 TTTTCATTTTTTGACTCGTGGTTTAATCCTTATCGTTTTTATTTTTTGACTAGTGATTTAAT-CT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* **
5176718 AGTCAC
66 GGT-TG
* * * * * * * * * *
5176724 TTTTTA-TTTTTGACTCGTGATTTAATCTC-AGTCGTTGTCGTTTCTTGACTCATGATTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5176787 CGATTG
65 TGGTTG
* * * * * ** * *
5176793 TTTTTATTTCTTAACTCGTGATTTAAAT-CCGATTGTATTCATTTTTTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
*
5176857 TGGTCG
65 TGGTTG
* * * ** * ** * *
5176863 TTTTCATTTTTTTACTAATGGTTTCATCTTGGTTGTTTTCATTTTTTGACTCGCGATTTAAT-CT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
5176927 CGGTCT-
66 -GGT-TG
** * * * * * * * *** *
5176933 TTTTGGTTTTGTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* **
5176998 GATCA
66 GGTTG
* * * * ** * * * *
5177003 TTTTTATTTTTTAACTCGTGATTTAATTTC-AGTCATTTTTCATTCTCTGACAT-GTGATTTAGT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCA-TTTTCATTTTTTGAC-TCGTGGTTTAAT
* * *
5177066 -TTCGATGG
63 CCT-GGTTG
* * * * * **
5177074 TTTTGATTTTCTGACTCATGATTTATTCTC-AGT-AGTTTTCATTTTTTGACAT-GTCATTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCA-TTTTCATTTTTTGAC-TCGTGGTTTAAT
* * **
5177136 -ATCGATCA
63 CCT-GGTTG
** * * * *
5177144 TTTTCATTTCTCCGACTCATGATTTAATCACGATCATTTTCATTTTTTTGACAC--AGTTTAATC
1 TTTTCATTT-TTTGACTCATGGTTTAATCCCGATCATTTTCA-TTTTTTGACTCGTGGTTTAATC
* **
5177207 CTGATCA
64 CTGGTTG
** * * ** ** * * * *
5177214 TTTTCATTTTTTGACTTGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAAT-TT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* *
5177278 TGTTCT
66 GGTT-G
* * ** * *
5177284 TTTTCATTTTTTGACTTATGGTGTAATTCCC-ATCATTTT--TTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAA-TCCCGATCATTTTCATTT-TTTGACTCGTGGTTTAATC
* **
5177346 CTAGTCA
64 CTGGTTG
* * * * ** * * * *
5177353 TTTTCATTTTTCTCATTCGTGATTTAAT-CC--TTGTTCTCATTTTCTGACTCGTGATTTAATTC
1 TTTTCATTTTT-TGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
5177415 TGGTTG
65 TGGTTG
* * * ** * * ** * * ** *
5177421 TTTTCATTATCTAAGACACGGTCTAATCCCTCTTATTTTCAATTTTTGACTTATGATTT--T--T
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
**
5177482 CATT-
66 GGTTG
* * ** * * *
5177486 TTCTGACTCATTT---T--T--TTT--TCTCGATCATTTTCATTTTCTT-ACTCATAGTTTAAT-
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTT-TTGACTCGTGGTTTAATC
* **
5177540 CTCGATCA
64 CT-GGTTG
* * * * *
5177548 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCC
*
5177613 TAGTTG
65 TGGTTG
** ** * ** * *
5177619 TTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCAAGGTTTTATCAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* *
5177684 AG-TC
66 GGTTG
* * * * ** *
5177688 ATTTCATTTTTTGACTCGTGATCTAATCATGGTCATTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCC
* **
5177753 AT-ATCA
65 -TGGTTG
* ** * * *
5177759 TTTT--TTTTATGGGT-A--GTTTAATCCCAATCATTTTCATTTTCTGACTTGTGGTTTAATCCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
*
5177819 GATTG
66 GGTTG
* * ** ** * ** **
5177824 TTTTCATTTTCTGACTTATGGCGTAATCTTGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CC
**
5177889 T-GTCA
65 TGGTTG
* * * * * **
5177894 TTTTCATTTTTTGACACACGATTTAATCGCAATCATTTTCATTTTTTTGACTTTTGGTTTAAT-C
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCC
*
5177958 TCGGTCG
65 T-GGTTG
* * * * * * *
5177965 TTCTTCATTTTTTGACTCGTGTTTTAATCACGATCGTTTTCATTTCTTAACTCGTGATTTGAA--
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTT-AATC
* *
5178028 CTCGATCG
64 CT-GGTTG
** * * * *
5178036 CATTCATTTTTTGACTCATGGTTTAATCTCAATCATTTT--TCTTTT---TCAT--TTT--T--T
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* **
5178090 GATCA
66 GGTTG
* * * * * ** * *
5178095 TTTTCATTTTCTAACTCGTAGCTTAATTTC-AGTCATTTTCATTTTTTGACTCATGGTTTAAACC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCC
*
5178159 T-GTTCAT
65 TGGTT--G
* * * * *
5178166 TTTTC-TTTTTATGAC-CGGTGGTTTAATCCCGATCATTTTTCCTTTTTCGA-TGGGTAGTTTAA
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCCCGATCA-TTTTCATTTTTTGACT-CGTGGTTTAA
*** **
5178228 TCCCAATCA
62 TCCTGGTTG
* ** * * * * * **
5178237 TTTTCATTTTCTGACTTGTGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTATGGTTTAAT-CT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
5178301 GGGTTG
66 -GGTTG
* ** * ** *
5178307 TTTTGATTTTTTGACTCATGGTTTAATCCCCG-TTGTTTTCATTTTTCGACTCACGGTTTAATCG
1 TTTTCATTTTTTGACTCATGGTTTAAT-CCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
****
5178371 TGAACA
65 TGGTTG
* * * *
5178377 TTTTCATTTTTTTGACTTATGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGATCATT-TTCATTTTTTGACTCGTGGTTTAATC
**
5178442 AC-GGTCA
64 -CTGGTTG
*
5178449 TTTTCATTTCTTGACTC
1 TTTTCATTTTTTGACTC
5178466 GTGATTTGAA
Statistics
Matches: 2321, Mismatches: 654, Indels: 420
0.68 0.19 0.12
Matches are distributed among these distances:
57 45 0.02
58 6 0.00
59 39 0.02
60 4 0.00
61 15 0.01
62 8 0.00
63 3 0.00
64 7 0.00
65 47 0.02
66 23 0.01
67 23 0.01
68 61 0.03
69 203 0.09
70 890 0.38
71 557 0.24
72 209 0.09
73 2 0.00
74 3 0.00
76 10 0.00
77 30 0.01
78 2 0.00
79 1 0.00
80 5 0.00
81 12 0.01
82 12 0.01
83 9 0.00
84 8 0.00
85 3 0.00
87 11 0.00
88 28 0.01
89 7 0.00
92 1 0.00
93 4 0.00
94 33 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (70 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
GGTTG
Found at i:5175638 original size:211 final size:210
Alignment explanation
Indices: 5175142--5176073 Score: 573
Period size: 211 Copynumber: 4.5 Consensus size: 210
5175132 GACTTATGAT
* * ** * * * * *
5175142 TTTTCATTTTCTGACTCGTGGTTTTTTCTCAATCATTTTCATTTTTTGA-CACAGTTTAATCTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCACAGTC-TTTTCATTTTTTGATCACGGTTTAATCACG
* * * * *
5175206 ATCATTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTGGTGGTCT
65 GTCATTTTCATTTTTTGACTCATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACTGGTAGTCT
*** * * * *
5175270 AATCCTGGTTGTTTTTATTTTTTGACTTATGGTTTAATCTGGCTCATTTTTATTTTCTGACTCAT
130 AATCCCAATCGTTTTCATTTTTTGACTTATGGTTTAATCTGGATCATTTTCATTTTCTGACTCAT
5175335 GGCTTAATCAGGATTC
195 GGCTTAATCAGGATTC
* * * ** * *
5175351 TTTTTATTTTTTGACTCATGGTTTAATCATAGTCATTTCATTTTTTGACTCGTGGTCTAATCATG
1 TTTTCATTTTTTGACTCATGGTTTAATCACAGTCTTTTCATTTTTTGA-TCACGGTTTAATCACG
* * * *
5175416 GTCGTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGATTGGTAGTT
65 GTC-ATTTTCATTTTTTGACTCATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACTGGTAGTC
* *
5175480 TAATCCCAATCGTTTTCATTTTTTGACTTGTGGTTTAATCCT-GATCATTTTCATTTTCTGACTT
129 TAATCCCAATCGTTTTCATTTTTTGACTTATGGTTTAAT-CTGGATCATTTTCATTTTCTGACTC
* * * * *
5175544 GTGGTTTAGTCTTGG-TTG
193 ATGGCTTAATC-AGGATTC
* * * *
5175562 TTTTCATTTTTTGACTCATGGTTTAATCACCGTTGTTTTCATTTTTCGATGCACGGTTTAATCGC
1 TTTTCATTTTTTGACTCATGGTTTAATCACAG-TCTTTTCATTTTTTGAT-CACGGTTTAATCAC
* * * * * *
5175627 GGTCATTTTCATTTTTTTGACTTATGGTTTAATCTC-GGTCGTTCTTT-ATTTTTTGACTCGT-G
64 GGTCATTTTCA-TTTTTTGACTCATGGTTTAATCCCTGATCATT-TTTCTTTTTTTGACTGGTAG
* * * * ** * ** ** *
5175689 TTTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTGAA-CCCGATCACATTCATTTTTTGA
127 -TCTAATCCCAATCGTTTTCATTTTTTGACTTATGGTTT-AATCTGGATCATTTTCATTTTCTGA
* ** *
5175753 CTCATGGTTTAATC-CCAATC
190 CTCATGGCTTAATCAGGATTC
* ** * * * ** *
5175773 ATTTT--TCTTTT---TCATTTTTTGAT--C-G--TTTTCATTTTCTAACTCATAGCTTAATTC-
1 -TTTTCATTTTTTGACTCATGGTTTAATCACAGTCTTTTCATTTTTTGA-TCACGGTTTAA-TCA
* * * * * * * *
5175827 CAGTCATTTTCATTTTCTGACTCATGGTTTAAT-CCT-ATTAATTTTTCCTTTTCTAACCGGTGG
63 CGGTCATTTTCATTTTTTGACTCATGGTTTAATCCCTGA-TCATTTTTCTTTTTTTGACTGGTAG
* ** * * ** *
5175890 TTTAATCCCGGTCGTTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACT
127 TCTAATCCCAATCGTTTTCATTTTTTGACTTATGGTTTAATCTGGATCATTTTCATTTTCTGACT
* * **
5175955 CATGGTTTAAACCCCG--TC
192 CATGGCTT-AATCAGGATTC
* ** * * *
5175973 ATTTTCATTTTTTGACTCACGGTTTAATTGCAGACATTTTCATTTTTTTGACTTATGGTTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCACAGTC-TTTTCA-TTTTTTGA-TCACGGTTTAATC
* * *
5176038 TCGGTCATTCTTCATTTTTTGACTCGTGTTTTAATC
62 ACGGTCATT-TTCATTTTTTGACTCATGGTTTAATC
5176074 ATGGTCGTTT
Statistics
Matches: 558, Mismatches: 125, Indels: 75
0.74 0.16 0.10
Matches are distributed among these distances:
199 6 0.01
200 96 0.17
201 33 0.06
202 9 0.02
204 1 0.00
205 9 0.02
207 10 0.02
208 14 0.03
209 26 0.05
210 15 0.03
211 157 0.28
212 155 0.28
213 27 0.05
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (210 bp):
TTTTCATTTTTTGACTCATGGTTTAATCACAGTCTTTTCATTTTTTGATCACGGTTTAATCACGG
TCATTTTCATTTTTTGACTCATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACTGGTAGTCTA
ATCCCAATCGTTTTCATTTTTTGACTTATGGTTTAATCTGGATCATTTTCATTTTCTGACTCATG
GCTTAATCAGGATTC
Found at i:5175985 original size:36 final size:35
Alignment explanation
Indices: 5175142--5177363 Score: 656
Period size: 35 Copynumber: 64.3 Consensus size: 35
5175132 GACTTATGAT
* * ** * *
5175142 TTTTCATTTTCTGACTCGTGGTTTTTTCTCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * *
5175177 TTTTCATTTTTTGACACA--GTTTAATCTCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * *
5175210 TTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TC-A
* ** * ** **
5175246 TTTTCTTTTTTTGACTGGTGGTCTAATCCTGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * **
5175281 TTTTTATTTTTTGACTTATGGTTTAAT-CTGGCTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* * * ** *
5175316 TTTTTATTTTCTGACTCATGGCTTAATCAGGATTC-
1 TTTTCATTTTTTGACTCATGGTTTAATC-CCAGTCA
* **
5175351 TTTTTATTTTTTGACTCATGGTTTAATCATAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * *** *
5175386 -TTTCATTTTTTGACTCGTGGTCTAATCATGGTCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTC-A
*
5175421 TTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCC-AGTCA
* * ** * * *
5175456 TTTTTCTTTTTTTGATTGGTAGTTTAATCCCAATCG
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
** *
5175492 TTTTCATTTTTTGACTTGTGGTTTAAT-CCTGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* ** * *** **
5175527 TTTTCATTTTCTGACTTGTGGTTTAGTCTTGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
**
5175562 TTTTCATTTTTTGACTCATGGTTTAATCACC-GTTG
1 TTTTCATTTTTTGACTCATGGTTTAATC-CCAGTCA
* * * *
5175597 TTTTCATTTTTCGA-TGCACGGTTTAATCGCGGTCA
1 TTTTCATTTTTTGACT-CATGGTTTAATCCCAGTCA
* * * *
5175632 TTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCG
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * *
5175668 TTCTTTATTTTTTGACTCGTGTTTTAATCAC-GATCG
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* * *
5175704 TTTTCATTTCTTGACTCGTGATTTGAA-CCC-GATCA
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCAG-TCA
** *
5175739 CATTCATTTTTTGACTCATGGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* ** *
5175774 TTTT--TCTTTT---TCAT--TTT--T-TGA-TCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * *
5175798 TTTTCATTTTCTAACTCATAGCTTAATTCCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * *
5175833 TTTTCATTTTCTGACTCATGGTTTAATCCTATTAA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * * *
5175868 TTTTTCCTTTTCTAAC-CGGTGGTTTAATCCCGGTCG
1 -TTTTCATTTTTTGACTC-ATGGTTTAATCCCAGTCA
** *** **
5175904 TTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* *
5175939 TTTTCATTTTTTGACTCATGGTTTAAACCCCGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* ** *
5175974 TTTTCATTTTTTGACTCACGGTTTAATTGCAGACA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * *
5176009 TTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCA
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCAGTCA
* * *** *
5176045 TTCTTCATTTTTTGACTCGTGTTTTAATCATGGTCG
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * *
5176081 TTTTCATTTCTTGACTCGTGATTTGAA-CCC-GATCG
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCAG-TCA
** * * *
5176116 CATTCATTTTTTGACTCAAGGTTTAATCCTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* ** *
5176151 TTTT--TCTTTT---TCAT--TTT--T-TGA-TCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * * *
5176175 TTTTCATTTTCTAACTCGTAGCTTAATTCCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
5176210 TTTTCATTTTTTGACTCATGGTTTAATCCC-GTTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
** * *
5176245 TTTTTC-TTTTTCTGACTGGTGGTTCAATCCCGGTCA
1 -TTTTCATTTTT-TGACTCATGGTTTAATCCCAGTCA
* * ** *
5176281 -TTTCTATTTTCTGACACATGGTTTAATCTTAGTCG
1 TTTTC-ATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * *
5176316 TTTTTATTTTTTGGCTCGTGCTTTAAT-CTAGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCA-GTCA
* **
5176351 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTG
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCCCAGTCA
* * ** *
5176386 TTTTCATTTTCTGACTCGTGGTTTAAT-GTAGGTTCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCA-G-TCA
* ** **
5176422 TTTTCATTTTTTAACTTGTACTTTAATCCCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * **
5176457 TTTTCATTTCTTGACTCATGATTCAAAT--GGGTCA
1 TTTTCATTTTTTGACTCATGGTT-TAATCCCAGTCA
** * * * * *
5176491 CATTCATTTTCTAACTCGTGGTTTATTCTC-G--A
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* **
5176523 TTATT--TTTTTT---TCAT--TTT--T-CGA-TTG
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * *
5176548 TTTTCATTTTCTGACTCGTGATTTAATCCCAATCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * **
5176583 TTTTCATTTTCTGACTCAAT-GTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTC-ATGGTTTAATCCCAGTCA
* * *
5176618 TTTTCTTTTTTTTAGCT-AGTGGTTTAATCTC-GATCA
1 TTTTCATTTTTTGA-CTCA-TGGTTTAATCCCAG-TCA
* * *
5176654 TTTTCATTTTTTGACTCGTGGTTTAATCCTTA-TCG
1 TTTTCATTTTTTGACTCATGGTTTAATCC-CAGTCA
* * *
5176689 TTTTTATTTTTTGACT-AGTGATTTAAT-CTAGTCA
1 TTTTCATTTTTTGACTCA-TGGTTTAATCCCAGTCA
* * * * *
5176723 CTTTTTA-TTTTTGACTCGTGATTTAATCTCAGTCG
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * * **
5176758 TTGTCGTTTCTTGACTCATGATTTAATCCC-GATTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* * * * * * **
5176793 TTTTTATTTCTTAACTCGTGATTTAAATCCGA-TTG
1 TTTTCATTTTTTGACTCATGGTTT-AATCCCAGTCA
* ** *
5176828 TATTCATTTTTTGACTCATGGTTTAATCCTGGTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * *** **
5176863 TTTTCATTTTTTTACTAATGGTTTCATCTTGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
** * * * *
5176898 TTTTCATTTTTTGACTCGCGATTTAATCTCGGTCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
** * * * * * **
5176933 TTTTGGTTTTGTAACTCGTAGTTTAATACGGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
**
5176968 TTTTCATTTTTTGACTCACAGTTTAATCCC-GATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* * * * **
5177003 TTTTTATTTTTTAACTCGTGATTTAATTTCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* * * ** **
5177038 TTTTTCATTCTCTGA--CATGTGATTTAGTTTC-GATGG
1 -TTTTCATTTTTTGACTCATG-G-TTTAATCCCAG-TCA
* * * * *
5177074 TTTTGATTTTCTGACTCATGATTTATTCTCAGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
* **
5177108 GTTTTCATTTTTTGA--CATGTCATTTAATATC-GATCA
1 -TTTTCATTTTTTGACTCATG--GTTTAATCCCAG-TCA
** * *
5177144 TTTTCATTTCTCCGACTCATGATTTAATCAC-GATCA
1 TTTTCATTT-TTTGACTCATGGTTTAATCCCAG-TCA
* *
5177180 TTTTCATTTTTTTGACACA--GTTTAAT-CCTGATCA
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCAG-TCA
** * * **
5177214 TTTTCATTTTTTGACTTGTGGTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
** * * *** *
5177249 TTTTTGTTTTCTGACTCATGATTTAAT-TTTGTTCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCAG-TCA
* *
5177284 TTTTCATTTTTTGACTTATGGTGTAATTCCCA-TCA
1 TTTTCATTTTTTGACTCATGGTTTAA-TCCCAGTCA
** * *
5177319 TTTT--TTTCCCTGACTCATGATTTAATCCTAGTCA
1 TTTTCATTT-TTTGACTCATGGTTTAATCCCAGTCA
5177353 TTTTCATTTTT
1 TTTTCATTTTT
5177364 CTCATTCGTG
Statistics
Matches: 1630, Mismatches: 419, Indels: 276
0.70 0.18 0.12
Matches are distributed among these distances:
24 15 0.01
25 4 0.00
26 18 0.01
28 9 0.01
29 10 0.01
30 7 0.00
31 12 0.01
32 1 0.00
33 69 0.04
34 159 0.10
35 942 0.58
36 361 0.22
37 19 0.01
38 4 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCCAGTCA
Found at i:5175996 original size:377 final size:375
Alignment explanation
Indices: 5175492--5176704 Score: 1367
Period size: 377 Copynumber: 3.2 Consensus size: 375
5175482 ATCCCAATCG
* * * * *
5175492 TTTTCATTTTT-TGACTTGTGGTTTAATCCTGATCATTTTCATTTTCTGACTTGTGGTTTAGTCT
1 TTTTC-TTTTTCTAACTGGTGGTTTAATCCCGATCATTTTCATTTTCTGACTCGTGGTTTAATCT
** *
5175556 TGGTTGTTTTCATTTTTTGACTCATGGTTTAATCACCGTTGTTTTCATTTTTCGA-TGCACGGTT
65 TGGTTGTTTTCATTTTTTGACTCATGGTTTAATCACCGTCATTTTCATTTTTTGACT-CACGGTT
*
5175620 TAATCGCGGTCATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCGTTCTTTATTTTTTGACT
129 TAATCGCAGTCATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTC-TTCTTTATTTTTTGACT
5175685 CGTGTTTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCACATTCATTTTT
193 CGTGTTTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCACATTCATTTTT
5175750 TGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTC
258 TGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTC
* **
5175815 ATAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTATTAAT
323 GTAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCCGTT-AT
* * * * * * *
5175869 TTTTCCTTTTCTAACCGGTGGTTTAATCCCGGTCGTTTTCATTTTTTGACTTGTGGTTTAATCTG
1 TTTTCTTTTTCTAACTGGTGGTTTAATCCCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTT
* *
5175934 GGTTGTTTTCATTTTTTGACTCATGGTTTAAACCCCGTCATTTTCATTTTTTGACTCACGGTTTA
66 GGTTGTTTTCATTTTTTGACTCATGGTTTAATCACCGTCATTTTCATTTTTTGACTCACGGTTTA
* * *
5175999 ATTGCAGACATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCATTCTTCATTTTTTGACTCG
131 ATCGCAGTCATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTC-TTCTTTATTTTTTGACTCG
* * *
5176064 TGTTTTAATCATGGTCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCGCATTCATTTTTTG
195 TGTTTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCACATTCATTTTTTG
* *
5176129 ACTCAAGGTTTAATCCTAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTCGT
260 ACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTCGT
*
5176194 AGCTTAATTCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCCCGTTCAT
325 AGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCCGTT-AT
* * * * *
5176246 TTTTCTTTTTCTGACTGGTGGTTCAATCCCGGTCA-TTTCTATTTTCTGACACATGGTTTAATCT
1 TTTTCTTTTTCTAACTGGTGGTTTAATCCCGATCATTTTC-ATTTTCTGACTCGTGGTTTAATCT
* * * * * * * **
5176310 TAGTCGTTTTTATTTTTTGGCTCGTGCTTTAATCTA-GGTCATTTTC-TTTTTCTGACTCAATGT
65 TGGTTGTTTTCATTTTTTGACTCATGGTTTAATC-ACCGTCATTTTCATTTTT-TGACTCACGGT
* * ** * ** * * *
5176373 TTAATCCCACTTGTTTTCA-TTTTCTGACTCGTGGTTTAATGTAGGTTCTT-TTTCATTTTTTAA
128 TTAATCGCAGTCATTTTCATTTTTTTGACTTATGGTTTAATCTCGG-TCTTCTTT-ATTTTTTGA
* ** * * * * *** *
5176436 CTTGTACTTTAATC-CCAGTCATTTTCATTTCTTGACTCATGA-TTCAAATGGGTCACATTCATT
191 CTCGTGTTTTAATCACGA-TCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCACATTCATT
* * * * * * * * * *
5176499 TTCTAACTCGTGGTTTATTCTCGATTA-TTTT-TTTTTCATTTTTCGATTGTTTTCATTTTCTGA
255 TTTTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAA
* * * * * *
5176562 CTCGT-GATTTAATCCCAATCGTTTTCATTTTCTGACTCAAT-GTTTAATCTCGGTT-G
320 CTCGTAG-CTTAATTCCAGTCATTTTCATTTTCTGACTC-ATGGTTTAATC-CCGTTAT
* * * * *
5176618 TTTTCTTTTTTTTAGCTAGTGGTTTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTC-TTTTTCTAACTGGTGGTTTAATCCCGATCATTTTCATTTTCTGACTCGTGGTTTAAT-C
* * *
5176683 TT-ATCGTTTTTATTTTTTGACT
64 TTGGTTGTTTTCATTTTTTGACT
5176705 AGTGATTTAA
Statistics
Matches: 713, Mismatches: 109, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
372 6 0.01
373 128 0.18
374 17 0.02
375 35 0.05
376 77 0.11
377 449 0.63
378 1 0.00
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (375 bp):
TTTTCTTTTTCTAACTGGTGGTTTAATCCCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTT
GGTTGTTTTCATTTTTTGACTCATGGTTTAATCACCGTCATTTTCATTTTTTGACTCACGGTTTA
ATCGCAGTCATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCTTCTTTATTTTTTGACTCGT
GTTTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTGAACCCGATCACATTCATTTTTTGA
CTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTCGTA
GCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCCGTTAT
Found at i:5176124 original size:142 final size:141
Alignment explanation
Indices: 5175887--5176142 Score: 354
Period size: 142 Copynumber: 1.8 Consensus size: 141
5175877 TTCTAACCGG
* * * *
5175887 TGGTTTAATCCCGGTCGTTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTG
1 TGGTTTAATCCCGGTCATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTCGTTTTCATTTCTTG
* ** *
5175952 ACTCATGGTTTAAACCCCGTCATTTTCATTTTTTGACTCACGGTTTAATTGCAGACATTTTCATT
66 ACTCATGATTTAAACCCCGTCACATTCATTTTTTGACTCAAGGTTTAATTGCAGACATTTTCATT
5176017 TTTTTGACTTA
131 TTTTTGACTTA
* *
5176028 TGGTTTAATCTCGGTCATTCTTCATTTTTTGACTCGTGTTTTAATCAT-GGTCGTTTTCATTTCT
1 TGGTTTAATCCCGGTCATT-TTCATTTTTTGACTCGTGGTTTAATC-TGGGTCGTTTTCATTTCT
* * *
5176092 TGACTCGTGATTTGAA-CCCGATCGCATTCATTTTTTGACTCAAGGTTTAAT
64 TGACTCATGATTTAAACCCCG-TCACATTCATTTTTTGACTCAAGGTTTAAT
5176143 CCTAATCATT
Statistics
Matches: 99, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
141 21 0.21
142 77 0.78
143 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (141 bp):
TGGTTTAATCCCGGTCATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTCGTTTTCATTTCTTG
ACTCATGATTTAAACCCCGTCACATTCATTTTTTGACTCAAGGTTTAATTGCAGACATTTTCATT
TTTTTGACTTA
Found at i:5176911 original size:175 final size:175
Alignment explanation
Indices: 5176545--5176927 Score: 434
Period size: 174 Copynumber: 2.2 Consensus size: 175
5176535 CATTTTTCGA
* * *
5176545 TTGTTTTCATTTTCTGACTCGTGATTTAATCCCAATCGTTTTCATTTTCTGACTCAATGTTTAAT
1 TTGTTTTCATTTTTTGACTCGTGATTTAATCTCAATCGTTGTCATTTTCTGACTCAATGTTTAAT
* * * * * * * *
5176610 CTCGGTTGTTTTCTTTTTTTTAGCTAGTGGTTTAATCTCGATCATTTTCATTTTTTGACTCGTGG
66 CCCGATTGTTTTCTATTTCTTAACTAGTGATTTAATCTCGATCATATTCATTTTTTGACTCATGG
* * *
5176675 TTTAATCCTTATCGTTTTTATTTTTTGACTAGTGATTTAATCTAG
131 TTTAATCCTGATCGTTTTCATTTTTTGACTAATGATTTAATCTAG
** * * *
5176720 TCACTTTTTA-TTTTTGACTCGTGATTTAATCTCAGTCGTTGTC-GTTTCTTGACTC-ATGATTT
1 T-TGTTTTCATTTTTTGACTCGTGATTTAATCTCAATCGTTGTCATTTTC-TGACTCAATG-TTT
* **
5176782 AATCCCGATTGTTTT-TATTTCTTAACTCGTGATTTAAATC-CGATTGTATTCATTTTTTGACTC
63 AATCCCGATTGTTTTCTATTTCTTAACTAGTGATTT-AATCTCGATCATATTCATTTTTTGACTC
* * * * *
5176845 ATGGTTTAATCCTGGTCGTTTTCATTTTTTTACTAATGGTTTCATCTTGG
127 ATGGTTTAATCCTGATCGTTTTCATTTTTTGACTAATGATTTAATC-TAG
*
5176895 TTGTTTTCATTTTTTGACTCGCGATTTAATCTC
1 TTGTTTTCATTTTTTGACTCGTGATTTAATCTC
5176928 GGTCTTTTTG
Statistics
Matches: 171, Mismatches: 31, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
174 85 0.50
175 81 0.47
176 5 0.03
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (175 bp):
TTGTTTTCATTTTTTGACTCGTGATTTAATCTCAATCGTTGTCATTTTCTGACTCAATGTTTAAT
CCCGATTGTTTTCTATTTCTTAACTAGTGATTTAATCTCGATCATATTCATTTTTTGACTCATGG
TTTAATCCTGATCGTTTTCATTTTTTGACTAATGATTTAATCTAG
Found at i:5177184 original size:71 final size:71
Alignment explanation
Indices: 5176968--5177229 Score: 184
Period size: 71 Copynumber: 3.7 Consensus size: 71
5176958 ATACGGGTCA
** ** * * * *
5176968 TTTTCATTTTTTGAC-TCACAGTTTAATCCCGATCATTTTTATTTTTTAACTCGTGATTTAATTT
1 TTTTCATTTTTTGACATGTCA-TTTAATATCGATCATTTTCATTTTCTGACTCATGATTTAA--T
*
5177032 CA-G-TCAT
63 CACGATCAG
* * * * * ** * * *
5177039 TTTTCATTCTCTGACATGTGATTTAGTTTCGATGGTTTTGATTTTCTGACTCATGATTTATTCTC
1 TTTTCATTTTTTGACATGTCATTTAATATCGATCATTTTCATTTTCTGACTCATGATTTAATCAC
5177104 -AGT-AG
66 GA-TCAG
*
5177109 TTTTCATTTTTTGACATGTCATTTAATATCGATCATTTTCATTTCTCCGACTCATGATTTAATCA
1 TTTTCATTTTTTGACATGTCATTTAATATCGATCATTTTCATTT-TCTGACTCATGATTTAATCA
5177174 CGATCA-
65 CGATCAG
* *
5177180 TTTTCATTTTTTTGACA---CAGTTTAAT-CCTGATCATTTTCATTTTTTGACT
1 TTTTCA-TTTTTTGACATGTCA-TTTAATATC-GATCATTTTCATTTTCTGACT
5177230 TGTGGTTTAA
Statistics
Matches: 150, Mismatches: 31, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
69 10 0.07
70 57 0.38
71 69 0.46
72 14 0.09
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.51
Consensus pattern (71 bp):
TTTTCATTTTTTGACATGTCATTTAATATCGATCATTTTCATTTTCTGACTCATGATTTAATCAC
GATCAG
Found at i:5177205 original size:34 final size:34
Alignment explanation
Indices: 5177109--5177225 Score: 107
Period size: 36 Copynumber: 3.4 Consensus size: 34
5177099 TTCTCAGTAG
5177109 TTTTCA-TTTTTTGACATGTCA-TTTAAT-ATCGATCA
1 TTTTCATTTTTTTGACA---CAGTTTAATCA-CGATCA
* ** *
5177144 TTTTCATTTCTCCGACTCATGATTTAATCACGATCA
1 TTTTCATTTTTTTGACACA-G-TTTAATCACGATCA
5177180 TTTTCATTTTTTTGACACAGTTTAATC-CTGATCA
1 TTTTCATTTTTTTGACACAGTTTAATCAC-GATCA
5177214 TTTTCATTTTTT
1 TTTTCATTTTTT
5177226 GACTTGTGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
33 3 0.04
34 24 0.35
35 7 0.10
36 33 0.49
37 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.08, T:0.51
Consensus pattern (34 bp):
TTTTCATTTTTTTGACACAGTTTAATCACGATCA
Found at i:5177524 original size:18 final size:18
Alignment explanation
Indices: 5177478--5177562 Score: 72
Period size: 17 Copynumber: 4.8 Consensus size: 18
5177468 GACTTATGAT
5177478 TTTTCATTTTCTGACTCA
1 TTTTCATTTTCTGACTCA
*
5177496 TTTT-TTTTTCTCGA-TCA
1 TTTTCATTTTCT-GACTCA
*
5177513 TTTTCATTTTCTTACTCA
1 TTTTCATTTTCTGACTCA
* *
5177531 TAGTTT-AATCTC-GA-TCA
1 T--TTTCATTTTCTGACTCA
5177548 TTTTCATTTTCTGAC
1 TTTTCATTTTCTGAC
5177563 CCATGGTTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
15 3 0.06
16 4 0.08
17 20 0.39
18 17 0.33
19 4 0.08
20 3 0.06
ACGTcount: A:0.18, C:0.20, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTTCATTTTCTGACTCA
Found at i:5177606 original size:36 final size:35
Alignment explanation
Indices: 5177508--5178522 Score: 369
Period size: 35 Copynumber: 28.3 Consensus size: 35
5177498 TTTTTTTCTC
* *
5177508 GATCATTTTCATTTTCTT-ACTCATAGTTTAAT-CT
1 GATCATTTTCATTTT-TTGACTCGTGGTTTAATCCT
* * *
5177542 CGATCATTTTCATTTTCTGACCCATGGTTTAATCCT
1 -GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* *
5177578 GATCATTTTTCTTTTTTTGACTGGTGGTTTAATCCT
1 GATCA-TTTTCATTTTTTGACTCGTGGTTTAATCCT
** *
5177614 -AGTTGTTTTCATTTTTTGACTTGTGGTTTAAT-CT
1 GA-TCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* ** * *
5177648 GGCTCATTTTCATTTTTTGACTCAAGGTTTTATCAT
1 -GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* * *
5177684 -AGTCA-TTTCATTTTTTGACTCGTGATCTAATCAT
1 GA-TCATTTTCATTTTTTGACTCGTGGTTTAATCCT
*
5177718 GGTCATTTTTCATTTTTTGACTCGTGGTTTAATCCAT
1 GATCA-TTTTCATTTTTTGACTCGTGGTTTAATCC-T
* * * *
5177755 -ATCATTTT--TTTTATG---GGTAGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* * *
5177784 AATCATTTTCATTTTCTGACTTGTGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
** * ** ** *
5177819 GATTGTTTTCATTTTCTGACTTATGGCGTAATCTT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* ** **
5177854 GGTTGTTTTCATTTTTTGACTAATGGTTTAATCCCT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CCT
* ** *
5177890 G-TCATTTTCATTTTTTGACACACGATTTAATCGC-
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATC-CT
* **
5177924 AATCATTTTCATTTTTTTGACTTTTGGTTTAAT-CT
1 GATCATTTTCA-TTTTTTGACTCGTGGTTTAATCCT
* * *
5177959 CGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCAC-
1 -GATCATT-TTCATTTTTTGACTCGTGGTTTAATC-CT
* * * *
5177996 GATCGTTTTCATTTCTTAACTCGTGATTTGAA--CT
1 GATCATTTTCATTTTTTGACTCGTGGTTT-AATCCT
*** *
5178030 CGATCGCATTCATTTTTTGACTCATGGTTTAATCTCAAT
1 -GATCATTTTCATTTTTTGACTCGTGGTTTAATC-C--T
* * * * *
5178069 CATTTTTCTTTTTCATTTTTTGATCATTTTCAT-TTTCTAACTCGT
1 GA----TCATTTTCATTTTTTGA-C----TCGTGGTT-TAA-TCCT
* * * *
5178114 AGCTTAATTTCAGTCATTTTCATTTTTTGACTCATGGTTTAAACCT
1 -G-ATCATTT---TCA--T----TTTTTGACTCGTGGTTTAATCCT
* *
5178160 GTTCATTTTTC-TTTTTATGAC-CGGTGGTTTAATCCC
1 GATCA-TTTTCATTTTT-TGACTC-GTGGTTTAATCCT
* * * * *
5178196 GATCATTTTTCCTTTTTCGA-TGGGTAGTTTAATCCC
1 GATCA-TTTTCATTTTTTGACT-CGTGGTTTAATCCT
* * *
5178232 AATCATTTTCATTTTCTGACTTGTGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* * * * **
5178267 GGTCGTTTTCATTTTCTAACTTATGGTTTAAT-CT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* ** * * *
5178301 GGGTTGTTTTGATTTTTTGACTCATGGTTTAATCCCC
1 -GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CCT
** * ** *
5178338 G-TTGTTTTCATTTTTCGACTCACGGTTTAATCGT
1 GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
* **
5178372 GAACATTTTCATTTTTTTGACTTATGGTTTAAT-CT
1 GATCATTTTCA-TTTTTTGACTCGTGGTTTAATCCT
* *
5178407 CGATCGTTCTTCATTTTTTGACTCGTGTTTTAATCAC-
1 -GATCATT-TTCATTTTTTGACTCGTGGTTTAATC-CT
* * *
5178444 GGTCATTTTCATTTCTTGACTCGTGATTTGAA-CCT
1 GATCATTTTCATTTTTTGACTCGTGGTTT-AATCCT
* ** *
5178479 GATTGCA--TTCATTTCTTGACTCAAGGTTTAATCCC
1 GA-T-CATTTTCATTTTTTGACTCGTGGTTTAATCCT
*
5178514 AATCATTTT
1 GATCATTTT
5178523 TCTTTTTCAT
Statistics
Matches: 753, Mismatches: 146, Indels: 162
0.71 0.14 0.15
Matches are distributed among these distances:
30 19 0.03
32 6 0.01
33 9 0.01
34 42 0.06
35 392 0.52
36 199 0.26
37 18 0.02
38 3 0.00
39 2 0.00
42 16 0.02
43 5 0.01
44 3 0.00
45 5 0.01
46 7 0.01
47 14 0.02
48 5 0.01
51 1 0.00
52 7 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (35 bp):
GATCATTTTCATTTTTTGACTCGTGGTTTAATCCT
Found at i:5178024 original size:107 final size:105
Alignment explanation
Indices: 5177824--5178015 Score: 233
Period size: 107 Copynumber: 1.8 Consensus size: 105
5177814 ATCCTGATTG
* * *
5177824 TTTTCATTTTCTGACTTATGGCGTAATCTTGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTCTGACTTATGGCGTAATCTCGGTCGTTTTCATTTTTTGACTAATGGTTTAATCAC
* *
5177889 TGTCATTTTCATTTTTTGACACACGATTTAATCGCAATCA
66 TGTCATTTTCATTTCTTAACACACGATTTAATCGCAATCA
* * ** ** *
5177929 TTTTCATTTTTTTGACTTTTGGTTTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTCTGACTTATGGCGTAATCTCGGTCGTT-TTCATTTTTTGACTAATGGTTTAATC
*
5177994 AC-GATCGTTTTCATTTCTTAAC
64 ACTG-TCATTTTCATTTCTTAAC
5178016 TCGTGATTTG
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
105 6 0.08
106 26 0.37
107 39 0.55
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (105 bp):
TTTTCATTTTCTGACTTATGGCGTAATCTCGGTCGTTTTCATTTTTTGACTAATGGTTTAATCAC
TGTCATTTTCATTTCTTAACACACGATTTAATCGCAATCA
Found at i:5178277 original size:448 final size:441
Alignment explanation
Indices: 5177684--5178651 Score: 1451
Period size: 448 Copynumber: 2.2 Consensus size: 441
5177674 GTTTTATCAT
* * * * *
5177684 AGTCA-TTTCATTTTTTGACTCGTGATCTAATCATGGTCATTTTTCATTTTTTGACTC-GTGGTT
1 AGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGTTCATTTTTC-TTTTTTGAC-CGGTGGTT
*
5177747 TAATCCATATCATTTTTTTTATGGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTGTGGTT
64 TAATCCAGATCATTTTTTTTATGGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTGTGGTT
* * *
5177812 TAATCCTGATTGTTTTCATTTTCTGACTTATGGCGTAATCTTGGTTGTTTTCATTTTTTGACTAA
129 TAATCCTGATCGTTTTCATTTTCTAACTTATGGCGTAATCTGGGTTGTTTTCATTTTTTGACTAA
* *
5177877 TGGTTTAATCCCTGTCATTTTCATTTTTTGACACACGATTTAATCG-CAATCATTTTCATTTTTT
194 TGGTTTAATCCCCGTCATTTTCATTTTTCGACACACGATTTAATCGTCAA-CATTTTCATTTTTT
* * *
5177941 TGACTTTTGGTTTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGATCGTTTTC
258 TGACTTATGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGATCATTTTC
* * *
5178006 ATTTCTTAACTCGTGATTTGAA-CTCGATCGCATTCATTTTTTGACTCATGGTTTAATCTCAATC
323 ATTTCTTAACTCGTGATTTGAACCT-GATCGCATTCATTTCTTGACTCAAGGTTTAATCCCAATC
*
5178070 ATTTTTCTTTTTCATTTTTTGATCATTTTCATTTTCTAACTCGTAGCTTAATTTC
387 ATTTTTCTTTTTCATTTTTTGATCATTTTCATTTTCTAACTCGTAGCTTAATTCC
*
5178125 AGTCATTTTCATTTTTTGACTCATGGTTTAAACCTGTTCATTTTTCTTTTTATGACCGGTGGTTT
1 AGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGTTCATTTTTCTTTTT-TGACCGGTGGTTT
*
5178190 AATCCCGATCATTTTTCCTTTTTCGATGGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTG
65 AATCCAGATCA--TTT--TTTTT--ATGGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTG
* ** *
5178255 TGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTATGGTTTAATCTGGGTTGTTTTGATTTTTTG
124 TGGTTTAATCCTGATCGTTTTCATTTTCTAACTTATGGCGTAATCTGGGTTGTTTTCATTTTTTG
* ** * * *
5178320 ACTCATGGTTTAATCCCCGTTGTTTTCATTTTTCGACTCACGGTTTAATCGTGAACATTTTCATT
189 ACTAATGGTTTAATCCCCGTCATTTTCATTTTTCGACACACGATTTAATCGTCAACATTTTCATT
*
5178385 TTTTTGACTTATGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGGTCAT
254 TTTTTGACTTATGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGATCAT
* *
5178450 TTTCATTTCTTGACTCGTGATTTGAACCTGATTGCATTCATTTCTTGACTCAAGGTTTAATCCCA
319 TTTCATTTCTTAACTCGTGATTTGAACCTGATCGCATTCATTTCTTGACTCAAGGTTTAATCCCA
*
5178515 ATCATTTTTCTTTTTCATTTTTTGATCGTTTTCATTTTCTAACTCGTAGCTTAATTCC
384 ATCATTTTTCTTTTTCATTTTTTGATCATTTTCATTTTCTAACTCGTAGCTTAATTCC
* * *
5178573 AGTCATTTTCATTTTCTGACTCTTGGTTTAATCCTGTTCATTTTTCTTTTTCTGACTGGTGGTTT
1 AGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGTTCATTTTTCTTTTT-TGACCGGTGGTTT
5178638 AATCTCAG-TCATTT
65 AATC-CAGATCATTT
5178652 CCATTTTCTG
Statistics
Matches: 475, Mismatches: 40, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
441 11 0.02
442 54 0.11
444 3 0.01
446 8 0.02
448 393 0.83
449 6 0.01
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (441 bp):
AGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGTTCATTTTTCTTTTTTGACCGGTGGTTTA
ATCCAGATCATTTTTTTTATGGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTGTGGTTTA
ATCCTGATCGTTTTCATTTTCTAACTTATGGCGTAATCTGGGTTGTTTTCATTTTTTGACTAATG
GTTTAATCCCCGTCATTTTCATTTTTCGACACACGATTTAATCGTCAACATTTTCATTTTTTTGA
CTTATGGTTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGATCATTTTCATT
TCTTAACTCGTGATTTGAACCTGATCGCATTCATTTCTTGACTCAAGGTTTAATCCCAATCATTT
TTCTTTTTCATTTTTTGATCATTTTCATTTTCTAACTCGTAGCTTAATTCC
Found at i:5178625 original size:36 final size:35
Alignment explanation
Indices: 5178543--5178731 Score: 170
Period size: 35 Copynumber: 5.4 Consensus size: 35
5178533 TTTTTGATCG
* * * *
5178543 TTTTCATTTTCTAACTCGTAGCTTAAT-TCCAGTCA
1 TTTTCATTTTCTGACTCATGGTTTAATCT-CAGTCA
* *
5178578 TTTTCATTTTCTGACTCTTGGTTTAATC-CTGTTCA
1 TTTTCATTTTCTGACTCATGGTTTAATCTCAG-TCA
* **
5178613 TTTTTCTTTTTCTGACTGGTGGTTTAATCTCAGTCA
1 -TTTTCATTTTCTGACTCATGGTTTAATCTCAGTCA
* * *
5178649 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCG
1 TTTTCATTTTCTGACTCATGGTTTAATCTCAGTCA
* * * *
5178684 TTTCCATTTTTTAACTCATGCTTTAATCT-AGGTCA
1 TTTTCATTTTCTGACTCATGGTTTAATCTCA-GTCA
5178719 TTTTC-TTTTCTGA
1 TTTTCATTTTCTGA
5178732 TCANNNNNNN
Statistics
Matches: 127, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
34 9 0.07
35 88 0.69
36 28 0.22
37 2 0.02
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCATGGTTTAATCTCAGTCA
Found at i:5179945 original size:36 final size:36
Alignment explanation
Indices: 5179845--5179947 Score: 102
Period size: 36 Copynumber: 2.9 Consensus size: 36
5179835 TTTATTCCCC
* ** **
5179845 TGACTCATGA-TTAATCCCTGGTCATTTCATTTTTT
1 TGACTCATGATTTAATCCTTGGTTGTTTCATTTTAA
* *
5179880 TGATTCATGATTTAATCCTTGTTTGTTTCATTTTAA
1 TGACTCATGATTTAATCCTTGGTTGTTTCATTTTAA
* *
5179916 TGACTCGTGATTTAAT-TTTGGTTGCTTTCATT
1 TGACTCATGATTTAATCCTTGGTTG-TTTCATT
5179948 ATCTAAGACC
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
35 15 0.27
36 40 0.73
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (36 bp):
TGACTCATGATTTAATCCTTGGTTGTTTCATTTTAA
Found at i:5180126 original size:71 final size:71
Alignment explanation
Indices: 5180042--5180604 Score: 339
Period size: 71 Copynumber: 7.9 Consensus size: 71
5180032 TTAATCTCGA
* * * *
5180042 TCATTTTCAATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTA
1 TCATTTTC-ATTTTTTGACTCATGGTTTAATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTA
5180107 ATCGTGG
65 ATCGTGG
** ** * * * * *
5180114 TTGTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTC-ATTTTCATTTTTCGACTCATGGCTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCT-GATCGTTTTTCATTTTTTGACTCGTGGTTTA
5180177 ATCG-GG
65 ATCGTGG
* * * *
5180183 ATTATTTTCATTTTTTGACTCATGGTTTAATCGT-AGTC-ATTTTCATTTTTTGAC-CTGTGGTC
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCGTTTTTCATTTTTTGACTC-GTGGTT
* *
5180245 TAATCATGA
63 TAATCGTGG
* * * * * * *
5180254 TCGTTTTTCATTTTTTGACTCGTGGTTTAGTCCCT-ATCATTTTTCTTTTTTTGA-TGGGTAGTT
1 TC-ATTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCGTTTTTCATTTTTTGACT-CGTGGTT
****
5180317 TAATCCCAA
63 TAATCGTGG
* ** ** * * *
5180326 TCATTTTCATTTTCTGACTTGTAATTTAATCCTGGTCGTTTTT-ATTTTCTGACTTGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAA
5180390 TC-TGGG
66 TCGT-GG
** * * *
5180396 TTGTTTTTAATTTTTTGACTAATGGTTTAATCCCCG-TCG-TTTTCATTTTTTGACTCGTGGTTT
1 -TCATTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCGTTTTTCATTTTTTGACTCGTGGTTT
*
5180459 AATCGCGG
64 AATCGTGG
* * * * *
5180467 TCATTTTCATTTTTTTGACTTATGGTTTAAT-CTCGGTCATTCTTT-ATTTTTTAACTCGTGTTT
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCCT-GATCGTT-TTTCATTTTTTGACTCGTGGTT
** *
5180530 TAATCACGA
63 TAATCGTGG
* * * * ** * *
5180539 TCGTTTTCATTTCTTGACTCATGATTTTAA-CCTAATCG-CATTCATTTTCTGACTCATGGTTTA
1 TCATTTTCATTTTTTGACTCATG-GTTTAATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTA
5180602 ATC
65 ATC
5180605 CCAATCATTT
Statistics
Matches: 378, Mismatches: 87, Indels: 54
0.73 0.17 0.10
Matches are distributed among these distances:
69 6 0.02
70 129 0.34
71 164 0.43
72 76 0.20
73 3 0.01
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.51
Consensus pattern (71 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAA
TCGTGG
Found at i:5180128 original size:35 final size:35
Alignment explanation
Indices: 5180045--5180605 Score: 332
Period size: 35 Copynumber: 15.8 Consensus size: 35
5180035 ATCTCGATCA
* * * *
5180045 TTTTCAATTTTCTGACCCATGGTTTAATCCTGATCG
1 TTTTC-ATTTTTTGACTCGTGGTTTAATCCTGGTCG
* * * *
5180081 TTTTTCTTTTTTTGACTGGTGGTTTAATCGTGGTTG
1 -TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCG
* *
5180117 TTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG-TCG
* * * * **
5180152 TTTTCATTTTTCGACTCATGGCTTAAT-CGGGATTA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGG-TCG
* * * *
5180187 TTTTCATTTTTTGACTCATGGTTTAATCGTAGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCG
* * *
5180222 TTTTCATTTTTTGAC-CTGTGGTCTAATCATGATCG
1 TTTTCATTTTTTGACTC-GTGGTTTAATCCTGGTCG
* * *
5180257 TTTTTCATTTTTTGACTCGTGGTTTAGTCCCT-ATCAT
1 -TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGGTC-G
* * * *** *
5180294 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCA
1 TTTTCATTTTTTGACT-CGTGGTTTAATCCTGGTCG
* * **
5180329 TTTTCATTTTCTGACTTGTAATTTAATCCTGGTCG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCG
* * * *
5180364 TTTTTATTTTCTGACTTGTGGTTTAAT-CTGGGTTG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTCG
* ** **
5180399 TTTTTAATTTTTTGACTAATGGTTTAATCCCCGTCG
1 -TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCG
*
5180435 TTTTCATTTTTTGACTCGTGGTTTAATCGC-GGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGGTCG
** *
5180470 TTTTCATTTTTTTGACTTATGGTTTAAT-CTCGGTCA
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GGTCG
* * * *
5180506 TTCTTTATTTTTTAACTCGTGTTTTAATCAC-GATCG
1 TT-TTCATTTTTTGACTCGTGGTTTAATC-CTGGTCG
* * * **
5180542 TTTTCATTTCTTGACTCATGATTTTAA-CCTAATCG
1 TTTTCATTTTTTGACTCGTG-GTTTAATCCTGGTCG
** * *
5180577 CATTCATTTTCTGACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCC
5180606 CAATCATTTT
Statistics
Matches: 416, Mismatches: 85, Indels: 48
0.76 0.15 0.09
Matches are distributed among these distances:
34 13 0.03
35 235 0.56
36 155 0.37
37 12 0.03
38 1 0.00
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTCG
Found at i:5180191 original size:70 final size:67
Alignment explanation
Indices: 5179974--5180604 Score: 227
Period size: 71 Copynumber: 8.9 Consensus size: 67
5179964 AATCCCTCTC
* ** * * *
5179974 ATTTTCATTTTCTTGACTTCGTGGTTTTTTCTCGATCATTTTCACTTTTGACTCATAGTTAATCT
1 ATTTTCATTTT-TTGAC-TCATGGTTTAATCT-GATCATTTTCATTTTTGACTCATGGTTAATCG
* *
5180039 CGATC
63 GGATT
* * * * **
5180044 ATTTTCAATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAAT
1 ATTTTC-ATTTTTTGACTCATGGTTTAAT-CTGATC-ATTTTC-ATTTTTGACTCATGG-TTAAT
5180109 CGTGG-TT
61 CG-GGATT
* ** *
5180116 GTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTCGACTCATGGCTTAATCG
1 ATTTTCATTTTTTGACTCATGGTTTAATCT-GATCATTTTCATTTTT-GACTCATGG-TTAATCG
5180181 GGATT
63 GGATT
*
5180186 ATTTTCATTTTTTGACTCATGGTTTAATC-GTAGTCATTTTCATTTTTTGAC-CTGTGGTCTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTG-A-TCATTTTCA-TTTTTGACTC-ATGGT-TAAT
**
5180249 CATGATCGT
61 CGGGAT--T
* * * ** *
5180258 -TTTTCATTTTTTGACTCGTGGTTTAGTCCCT-ATCATTTTTCTTTTTTTGA-TGGGTAGTTTAA
1 ATTTTCATTTTTTGACTCATGGTTTAAT--CTGATCA-TTTTC-ATTTTTGACT-CAT-GGTTAA
*** *
5180320 TCCCAATC
60 TCGGGATT
* ** ** * * * **
5180328 ATTTTCATTTTCTGACTTGTAATTTAATCCTGGTCGTTTTTATTTTCTGACTTGTGGTTTAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAAT-CTGATCATTTTCATTTT-TGACTCATGG-TTAATC-
5180393 GGG-TT
62 GGGATT
* * * * * *
5180398 GTTTTTAATTTTTTGACTAATGGTTTAATCCCCG-TCGTTTTCATTTTTTGACTCGTGGTTTAAT
1 -ATTTTCATTTTTTGACTCATGGTTTAAT--CTGATCATTTTCA-TTTTTGACTCATGG-TTAAT
*
5180462 CGCGG-TC
61 CG-GGATT
* * * * * *
5180469 ATTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCATTCTTTATTTTTTAACTCGTGTTTTAAT
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCT-GATCATT-TTCA-TTTTTGACTCATG-GTTAAT
** *
5180534 CACGATC
61 CGGGATT
* * * * * ***
5180541 GTTTTCATTTCTTGACTCATGATTTTAACCTAATCGCATTCATTTTCTGACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATG-GTTTAATCTGATCATTTTCATTTT-TGACTCATGG-TTAATC
5180605 CCAATCATTT
Statistics
Matches: 427, Mismatches: 91, Indels: 86
0.71 0.15 0.14
Matches are distributed among these distances:
68 1 0.00
69 31 0.07
70 131 0.31
71 181 0.42
72 79 0.19
73 4 0.01
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.51
Consensus pattern (67 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTGATCATTTTCATTTTTGACTCATGGTTAATCGGGA
TT
Found at i:5180623 original size:36 final size:35
Alignment explanation
Indices: 5179975--5180622 Score: 218
Period size: 35 Copynumber: 18.3 Consensus size: 35
5179965 ATCCCTCTCA
** *
5179975 TTTTCATTTTCTTGACTTCGTGGTTTTTTCTCGATCA-
1 TTTTC-TTTT-TTGAC-TCGTGGTTTAATCCCGATCAT
** * * *
5180012 TTTTCACTTTTGACTCATAG-TTAATCTCGATCA-
1 TTTTCTTTTTTGACTCGTGGTTTAATCCCGATCAT
* * * * *
5180045 TTTTCAATTTTCTGACCCATGGTTTAATCCTGATCGT
1 TTTTC--TTTTTTGACTCGTGGTTTAATCCCGATCAT
* ** *
5180082 TTTTCTTTTTTTGACTGGTGGTTTAATCGTGGT--T
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
* ** *
5180116 GTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCA-
1 -TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
* * * ** *
5180152 TTTTCATTTTTCGACTCATGGCTTAATCGGGATTA-
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
*
5180187 TTTTCATTTTTTGACTCATGGTTTAAT--CGTAGTCA-
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCG-A-TCAT
* ** *
5180222 TTTTCATTTTTTGAC-CTGTGGTCTAATCATGATCGT
1 TTTTC-TTTTTTGACTC-GTGGTTTAATCCCGATCAT
* *
5180258 TTTTCATTTTTTGACTCGTGGTTTAGTCCCTATCAT
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
* * *
5180294 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCA-
1 TTTTC-TTTTTTGACT-CGTGGTTTAATCCCGATCAT
* * ** * * *
5180329 TTTTCATTTTCTGACTTGTAATTTAATCCTGGTCGT
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
* * * ** * **
5180365 TTTTATTTTCTGACTTGTGGTTTAATCTGGGTTGT
1 TTTTCTTTTTTGACTCGTGGTTTAATCCCGATCAT
* ** *
5180400 TTTTAATTTTTTGACTAATGGTTTAATCCCCG-TC-G
1 TTTT-CTTTTTTGACTCGTGGTTTAAT-CCCGATCAT
* *
5180435 TTTTCATTTTTTGACTCGTGGTTTAATCGCGGTCA-
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
** * *
5180470 TTTTCATTTTTTTGACTTATGGTTTAATCTCGGTCAT
1 TTTTC--TTTTTTGACTCGTGGTTTAATCCCGATCAT
* * * * *
5180507 TCTTTATTTTTTAACTCGTGTTTTAATCACGATC-G
1 T-TTTCTTTTTTGACTCGTGGTTTAATCCCGATCAT
* * * ** *
5180542 TTTTCATTTCTTGACTCATGATTTTAA-CCTAATC-G
1 TTTTC-TTTTTTGACTCGTG-GTTTAATCCCGATCAT
** * * *
5180577 CATTCATTTTCTGACTCATGGTTTAATCCCAATCAT
1 TTTTC-TTTTTTGACTCGTGGTTTAATCCCGATCAT
5180613 TTTTCTTTTT
1 TTTTCTTTTT
5180623 CATTTTTGAT
Statistics
Matches: 476, Mismatches: 106, Indels: 60
0.74 0.17 0.09
Matches are distributed among these distances:
33 17 0.04
34 18 0.04
35 251 0.53
36 172 0.36
37 15 0.03
38 3 0.01
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.52
Consensus pattern (35 bp):
TTTTCTTTTTTGACTCGTGGTTTAATCCCGATCAT
Found at i:5180696 original size:35 final size:34
Alignment explanation
Indices: 5180635--5180925 Score: 165
Period size: 35 Copynumber: 8.3 Consensus size: 34
5180625 TTTTTGATCG
* * * * *
5180635 TTTTCATTTTCTAACTCGTAGCTTAATTCCAGTCG
1 TTTTCATTTTCTGACTCATGGTTTAA-TCCAGTCA
* * * *
5180670 TTTTCATTTTCTAACTCATGTTTTAATCCTGTTTA
1 TTTTCATTTTCTGACTCATGGTTTAATCCAG-TCA
* *
5180705 TTTTTCTTTTTCTGAC-CTATGGTTTAATCGCAATCA
1 -TTTTCATTTTCTGACTC-ATGGTTTAATC-CAGTCA
* *
5180741 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCA
1 TTTTCATTTTCTGACTCATGGTTTAATC-CAGTCA
* * * * * *
5180776 TTTCCATTTTCTGGCTCGTGCTTTAATCTAGGGCA
1 TTTTCATTTTCTGACTCATGGTTTAATCCA-GTCA
* * **
5180811 TTTTCTTTTTCTGACTCAAT-GTTTAATTCCACTTG
1 TTTTCATTTTCTGACTC-ATGGTTTAA-TCCAGTCA
* **
5180846 TTTTCGA-TTTCTGACTCGTGGTTTAATCCAGGTTGT
1 TTTTC-ATTTTCTGACTCATGGTTTAATCCA-G-TCA
* * * **
5180882 TTTTCATTTTTTAACTCGTACTTTAATCCCAGTCA
1 TTTTCATTTTCTGACTCATGGTTTAAT-CCAGTCA
5180917 TTTTCATTT
1 TTTTCATTT
5180926 CTTAACTCAT
Statistics
Matches: 199, Mismatches: 43, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
34 11 0.06
35 131 0.66
36 53 0.27
37 4 0.02
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.50
Consensus pattern (34 bp):
TTTTCATTTTCTGACTCATGGTTTAATCCAGTCA
Found at i:5181245 original size:372 final size:375
Alignment explanation
Indices: 5180512--5181245 Score: 803
Period size: 372 Copynumber: 2.0 Consensus size: 375
5180502 GTCATTCTTT
** * * * *
5180512 ATTTTTTAACTCGTGTTTTAATCACGATCGTTTTCATTTCTTGACTCATGATTTTAACCTAATCG
1 ATTTTTTAACTCGTACTTTAATCACGATCATTTTCATTTCTTAACTCATGATTTCAAACTAATCG
* **
5180577 CATTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTGATCGTTTTCAT
66 CATTCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTCAATCGTTTTCAT
* * * * * * *
5180642 TTTCTAACTCGTAGCTTAATTCCAGTCGTTTTCATTTTCTAACTCATGTTTTAATCCTGTTTATT
131 TTTCTAACACGTAGCTTAATCCCAATCGCTTTCATTTTCTAACTCATGATTTAATCCTGGTCATT
* * *
5180707 TTTCTTTTTCTGACCTATGGTTTAATCGCAATCATTTCCATTTTCTGACTCATGGTTTAATCTTA
196 TTCCTTTTTCTGACCTATGGTTTAATCGCAATCATTTCAATTTTCTGACTCATGCTTTAATCTTA
* * * * *
5180772 GTCATTTCCATTTTCTGGCTCGTGCTTTAATCTAGGGCATTTTCTTTTTCTGACTCAATGTTTAA
261 GTCATTTCCATTTTCTGACTAGTGATTTAATCTAGAGCATTTTCTTTATCTGACTCAATGTTTAA
** * * *
5180837 TTCCACTTGTTTTCGATTTCTGACTCGTGGTTTAATCCAGGTTGTTTTTC
326 TTCCACTCCTTGTCGATTTCTGACTCATGATTTAATCCAGGTTGTTTTTC
* **
5180887 ATTTTTTAACTCGTACTTTAATC-CCAGTCATTTTCATTTCTTAACTCATGA-TTCAAACTGGTC
1 ATTTTTTAACTCGTACTTTAATCACGA-TCATTTTCATTTCTTAACTCATGATTTCAAACTAATC
* * * * *
5180950 TCATTCATTTTCTAACTCGTTGTTTAGTCCCGATCA-TTTT-TTTTT-ATTTTCCAATCGTTTTC
65 GCATTCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTT-CAATCGTTTTC
* * * * *
5181012 ATTTTCTGACACGTGGTTTAATCCCAATCGCTTTCATTTTCTGACTCAAT-ATTTAATCTTGGTC
129 ATTTTCTAACACGTAGCTTAATCCCAATCGCTTTCATTTTCTAACTC-ATGATTTAATCCTGGTC
* * ** *
5181076 ATTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCATTTTAATTTTCTGACTC-TAGCTTTAA
193 ATTTTCCTTTTTCTGACCTA-TGGTTTAATCGCAATCATTTCAATTTTCTGACTCAT-GCTTTAA
* * *
5181139 TCCTTA-TCGTTTCCATTTTTTGACTAGTGATTTAATCCT-GATCATTTT-TTATATCTGACTC-
256 T-CTTAGTCATTTCCATTTTCTGACTAGTGATTTAAT-CTAGAGCATTTTCTT-TATCTGACTCA
* *
5181200 GTGATTTAA-TCTCAGTCCTTGTCG-TTTCTTGACTCATGATTTAATC
318 ATG-TTTAATTC-CACTCCTTGTCGATTTC-TGACTCATGATTTAATC
5181246 TCGATTATTT
Statistics
Matches: 296, Mismatches: 52, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
371 20 0.07
372 181 0.61
373 12 0.04
374 40 0.14
375 43 0.15
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.49
Consensus pattern (375 bp):
ATTTTTTAACTCGTACTTTAATCACGATCATTTTCATTTCTTAACTCATGATTTCAAACTAATCG
CATTCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTCAATCGTTTTCAT
TTTCTAACACGTAGCTTAATCCCAATCGCTTTCATTTTCTAACTCATGATTTAATCCTGGTCATT
TTCCTTTTTCTGACCTATGGTTTAATCGCAATCATTTCAATTTTCTGACTCATGCTTTAATCTTA
GTCATTTCCATTTTCTGACTAGTGATTTAATCTAGAGCATTTTCTTTATCTGACTCAATGTTTAA
TTCCACTCCTTGTCGATTTCTGACTCATGATTTAATCCAGGTTGTTTTTC
Found at i:5181263 original size:35 final size:35
Alignment explanation
Indices: 5181007--5181911 Score: 365
Period size: 35 Copynumber: 25.8 Consensus size: 35
5180997 TTTCCAATCG
* * * * * * *
5181007 TTTTCATTTTCTGACACGTGGTTTAATCCCAATCG
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* * * *
5181042 CTTTCATTTTCTGACTCAAT-ATTTAATCTTGGTCA
1 TTTTCATTTTTTGACTC-ATGATTTAATCTCGATCA
* * *
5181077 TTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTCGGTCA
1 TTTTCATTTTT-TGA-CTCA-TGATTTAATCTCGATCA
* * * * *
5181113 TTTTAATTTTCTGACTC-TAGCTTTAATC-CTTATCG
1 TTTTCATTTTTTGACTCAT-GATTTAATCTC-GATCA
*
5181148 TTTCCATTTTTTGACT-AGTGATTTAATC-CTGATCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCTC-GATCA
* * *
5181183 TTTT--TTATATCTGACTCGTGATTTAATCTC-AGTCC
1 TTTTCATT-T-TTTGACTCATGATTTAATCTCGA-TCA
* * * *
5181218 TTGTCGTTTCTTGACTCATGATTTAATCTCGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* * * * **
5181253 TTTTCATTTCTTAACT-AGTAATTTAAAC-CTGATTG
1 TTTTCATTTTTTGACTCA-TGATTTAATCTC-GATCA
* * * * *
5181288 TATTCATTTTTTTGACTCGTGGTTTAATC-CTGGTCG
1 TTTTCA-TTTTTTGACTCATGATTTAATCTC-GATCA
* *
5181324 TTTTCTTTTTTTGACTCATGGTTTAATCTCGATC-
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* * *
5181358 TTTTCATTTTCTGACTCACGATTT-ATCTCGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
** * * * * * *
5181392 TTTTTGTTTTCTAACACGT-AGTTTAATAC-GGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAAT-CTCGATCA
* * *
5181427 TTTTTATTTTCTGACTCATTG-TTTAATCTCAATCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCTCGATCA
* * *
5181462 TTTTCGTTTTTTAACTCATGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
*** * * * * * **
5181497 TTTTTCATTCCCTAACAT-GTGATTTAGTTTCGGTGG
1 -TTTTCATTTTTTGAC-TCATGATTTAATCTCGATCA
* *
5181533 TTTTGATTTTTTGACTCATGATTTATTCTC-AGT-A
1 TTTTCATTTTTTGACTCATGATTTAATCTCGA-TCA
* *
5181567 GTTTTCATTTTTTGACAT-GTGATTTAATATCGATCA
1 -TTTTCATTTTTTGAC-TCATGATTTAATCTCGATCA
* ** * **
5181603 TTTTCATTTCTCTGACTCATGATTTAATGACGGTTGT
1 TTTTCATTT-TTTGACTCATGATTTAATCTC-GATCA
* * **
5181640 TTTTCATTTTCTAACTTGTGATTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* * *
5181675 TTTTCATATTTTGACTCACGGTTTAATC-CTGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCTC-GATCA
* * * **
5181710 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
** * *
5181745 TTTTTGTTTTTTGACTCATGATTTAATTTCGATCT
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* *
5181780 TTTTTATTTTTTGACTTACA-G-TTTAAT-TCGCATCGC
1 TTTTCATTTTTTGAC-T-CATGATTTAATCTCG-ATC-A
** * *
5181816 TTTT-A-TTCCTGACTCATGATTTAATCTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
* * * **
5181849 TTTTCATTTTTCTGATTCGTGATTTAATCCTTG-TTG
1 TTTTCATTTTT-TGACTCATGATTTAAT-CTCGATCA
* *
5181885 TTTTTATTTTTTGACTAATGATTTAAT
1 TTTTCATTTTTTGACTCATGATTTAAT
5181912 TTTGGTTGTT
Statistics
Matches: 657, Mismatches: 157, Indels: 112
0.71 0.17 0.12
Matches are distributed among these distances:
32 2 0.00
33 17 0.03
34 66 0.10
35 405 0.62
36 147 0.22
37 20 0.03
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGATTTAATCTCGATCA
Found at i:5181622 original size:71 final size:72
Alignment explanation
Indices: 5181497--5181702 Score: 195
Period size: 72 Copynumber: 2.9 Consensus size: 72
5181487 ATTTCGATCA
** * * * ** * * *
5181497 TTTTTCATTCCCTAACATGTGATTTAGTTTCGGTGGTTTTGATTT-TTTGACTCATGATTTATTC
1 TTTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATC
*
5181561 TCAGTAG
66 ACAGTAG
* * *
5181568 -TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATG
1 TTTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATC
* *
5181632 ACGGTTG
66 ACAGTAG
* * * *
5181639 TTTTTCATTTTCTAACTTGTGATTTAATCTCGATCATTTTCATATT-T-TGACTCACGGTTTAAT
1 TTTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTCAT-TTCTCTGACTCATGATTTAAT
5181702 C
65 C
5181703 CTGATCATTT
Statistics
Matches: 109, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
70 34 0.31
71 34 0.31
72 39 0.36
73 2 0.02
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (72 bp):
TTTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATC
ACAGTAG
Found at i:5181941 original size:140 final size:138
Alignment explanation
Indices: 5181686--5181946 Score: 303
Period size: 140 Copynumber: 1.9 Consensus size: 138
5181676 TTTCATATTT
* * *
5181686 TGACTCACGGTTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTG
1 TGACTCACGATTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTTAATCTCGGTTGTTTTTA
* * *** *
5181751 TTTTTTGACTCATGATTTAATTTCGATCTTTTTTATTTTTTGACTTACAGTTTAATTCGCATCGC
66 TTTTTTGACTAATGATTTAATTTCGATCTTTTTCATTTGAAGAC-TACAGTCTAATTCGCATCGC
5181816 TTTTATTCC
130 TTTTATTCC
* * * * *
5181825 TGACTCATGATTTAATCTTGGTCATTTTCATTTTTCTGATTCGTGATTTAATC-CTTGTTGTTTT
1 TGACTCACGATTTAATCCTGATCATTTTCATTTTT-TGACTCGTGATTTAATCTC-GGTTGTTTT
* *
5181889 TATTTTTTGACTAATGATTTAATTTTGGT-TGTTTTCATTATCGAAGAC-ACAGTCTAAT
64 TATTTTTTGACTAATGATTTAATTTCGATCT-TTTTCATT-T-GAAGACTACAGTCTAAT
5181947 CCCTCTCATT
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
139 33 0.33
140 64 0.63
141 1 0.01
142 3 0.03
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.52
Consensus pattern (138 bp):
TGACTCACGATTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTTAATCTCGGTTGTTTTTA
TTTTTTGACTAATGATTTAATTTCGATCTTTTTCATTTGAAGACTACAGTCTAATTCGCATCGCT
TTTATTCC
Found at i:5182030 original size:18 final size:18
Alignment explanation
Indices: 5181975--5182030 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
5181965 CTGAATTATG
5181975 ATTTTCATTTTTTGACTC
1 ATTTTCATTTTTTGACTC
* * *
5181993 GTGGTTT--TTTTTTCAGTC
1 AT--TTTCATTTTTTGACTC
5182011 ATTTTCATTTTTTGACTC
1 ATTTTCATTTTTTGACTC
5182029 AT
1 AT
5182031 AGTTTAATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 3 0.11
18 22 0.79
20 3 0.11
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (18 bp):
ATTTTCATTTTTTGACTC
Found at i:5182048 original size:35 final size:35
Alignment explanation
Indices: 5181975--5184984 Score: 663
Period size: 35 Copynumber: 86.8 Consensus size: 35
5181965 CTGAATTATG
* ** *
5181975 ATTTTCATTTTTTGACTCGTGGTTTTTTTTTC-AGTC
1 ATTTTCATTTTTTGACTCATGG-TTTAATCTCGA-TC
*
5182011 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5182046 ATTTTCATTTTCTGACCCATGGTTTAATC-CTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * * * *
5182081 GTTTTTCTTTTTTTGAC-CGGTGGTTTAATCTTGGTT
1 -ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* * * *
5182117 GTTTTCATTTTTTGACTTGA-GGTTTAATCTGGCTC
1 ATTTTCATTTTTTGAC-TCATGGTTTAATCTCGATC
* * * *** *
5182152 ATTTTCATTTTTCGACTCATGGCTTAAACGATATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5182187 ATTTTCATTTTTCGACTCATCGTTTAATCATAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * *
5182222 ATTTTTATTTTTTGACCCGTGGTCTAATCAT-GGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * *
5182257 GTTTTTCATTTTGTGACTCGTGGTTTAATAC-CTATC
1 -ATTTTCATTTTTTGACTCATGGTTTAAT-CTCGATC
* ** * * *
5182293 ATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAAT-
1 A-TTTTCATTTTTTGACT-CATGGTTTAATCTCGATC
* * *
5182328 AGTTTTCATTTTCTGACAT-TTGGTTTAATC-CAGGTC
1 A-TTTTCATTTTTTGAC-TCATGGTTTAATCTC-GATC
* ** * * *
5182364 ATTTTCATTTTCTGACTTGTGGTTTAATCTAGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * **
5182399 TTTTTCATTTTTTGACTAAGGGTTTAATCCCCCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5182434 GTTTTCATTTTTCGACTCAGGGTTTAGTCACGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** * * *
5182469 ATTTTCATTTTTTTGACTTGTGATTTAATCTCGGTT
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5182505 GTTCTTTATTTTTGGACTCATGTTTTAATCACGATC
1 ATT-TTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * ** *
5182541 GTTTACATTTCTTAACTCGTTATTTGAACCT-GATCGC
1 ATTTTCATTTTTTGACTCATGGTTT-AATCTCGAT--C
* * *
5182578 A-TTT-ATTTTCTGACTCATGGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
5182611 A-TTT--TTTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5182634 GTTTTCATTTTCTAACTCATAGCTTAAT-TCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCT-CGATC
* *
5182669 ATTTTCATTTTCTGACTCATGGTTTAATC-CTATTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * *
5182704 ATTTTTCTTTTTTTGAC-CGGTGGTTTAATCCCGGTC
1 A-TTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* *
5182740 ATTTCCATTTTTTGACTCATGGTTTAATCTTTG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * * * * *
5182775 GTTTCCATTTTCTGGCTCGTGCTTTAATCTAGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5182810 ATTTTCTTTTTTTGACTCAAT-GTTTAATCCCAAT-
1 ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* ** * * *
5182844 GTTTTCATTTTTTGACTGGTGGTTTAATCTAGGTTG
1 ATTTTCATTTTTTGACTCATGGTTTAATCT-CGATC
* * * * *
5182880 TTTTTCATTTCTTGACTCGTGATTTGAACCT-GATTGC
1 ATTTTCATTTTTTGACTCATGGTTT-AATCTCGA-T-C
* *
5182917 A--TTCATTTTCTAACTCATGGTTTAATC-CGAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCG-ATC
*
5182950 ATTTT--TCTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * * *
5182974 GTTTTCATTTTCTAACTCGTAGCTTAAT-TCCAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* *
5183009 ATTTTCATTTTTTGACTCATGGTTTAATCTTGTTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5183044 ATTTTTC-TTTTTCTGAC-CGGTGGTTTAATCCCGATC
1 A-TTTTCATTTTT-TGACTC-ATGGTTTAATCTCGATC
* * *
5183080 ATTTCCATTTTCTGACTCATGGTTTAATCTTTG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * ** ** * * * *
5183115 GTTTCCATTTTCCGGTTCGTGCTTTAATCTAGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5183150 ATTTT--TTTTTCTGACTCAAT-GTTTAATCGC-A-C
1 ATTTTCATTTTT-TGACTC-ATGGTTTAATCTCGATC
* * * * *
5183182 TTGTATTCGTTTTTTGACTCGTGGTTTAATC-CAGGTTG
1 AT-T-TTCATTTTTTGACTCATGGTTTAATCTC--GATC
* * ** ** *
5183220 TTTTTCATTTTTTAACTTGTACTTTAATC-CCAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * *
5183255 ATTTTCATTTCTTGACTCATGATTCAAACT-GGTCGC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGAT--C
* * * * *
5183291 A-TTT-ATTTTCTAACTCGTGGTTTAGTCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
5183324 A--TT--TTTTTT---TCA---TTT--T-TCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5183346 GTTTTCATTTTTTGTCTCATTGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5183381 GTTTTCATTTTCTGACTTAAT-GTTTAGTCTTGGTC
1 ATTTTCATTTTTTGAC-TCATGGTTTAATCTCGATC
* * *
5183416 ATTTGCCCTTTTCT-AGCT-AGTGGTTTAATCTC-AGTC
1 ATTT-TCATTTTTTGA-CTCA-TGGTTTAATCTCGA-TC
* * *
5183452 ATTTTCATTTTCTGACTCGTGGTTTAATC-CTTATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * *
5183487 GTTTTCATTTTTTGACT-AGTGATTTAATC-CTAGTC
1 ATTTTCATTTTTTGACTCA-TGGTTTAATCTCGA-TC
* *
5183522 ATTTT--TTATTTCTGACTCGTGATTTAATCTC-AGTC
1 ATTTTCATT-TTT-TGACTCATGGTTTAATCTCGA-TC
* * * * *
5183557 GTTGTCATTTTTTGACTCATGATTTAATCCCGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5183592 GTTTTCATTTCTTAACCCATGATTTTAA-CTCGATT
1 ATTTTCATTTTTTGACTCATG-GTTTAATCTCGATC
* * * *
5183627 GTATTCATTCTTTTGACTCGTGGTTTAATC-CTAGTC
1 ATTTTCATT-TTTTGACTCATGGTTTAATCTCGA-TC
* * *
5183663 GTTTTCATTTTTTGACTCATGGTTTAATCTCGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * *
5183698 GTTTTCATTTTTTGACTCGCGGTTTAATGTCTATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * * ** * * * *
5183733 TTTTTTGTTTTCTAACTTGTTGTTTAATATGGCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** * *
5183768 ATTTTCATTTTTTGACTCACAGCTTAATCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*** * * * *
5183803 ATTTTTCATTCCCTGACAT-GTGGTTTAGTTTC-AGTG
1 A-TTTTCATTTTTTGAC-TCATGGTTTAATCTCGA-TC
* * * * *
5183839 GTTTTGATTTTCTGACTCATGATTTATTCTC-AGT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
*
5183873 AGTTTTCATTTTTTGA--CATGTGATTTAATATCGATC
1 A-TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATC
* * * * * * * * *
5183909 TTTTTCATTTCTCTGACTTATGATTTAGTGATGGTTG
1 ATTTTCATTT-TTTGACTCATGGTTTAAT-CTCGATC
* * *
5183946 TTTTTCATTTTCTGACATC-TGATTTAATCTCGATC
1 ATTTTCATTTTTTGAC-TCATGGTTTAATCTCGATC
* * *
5183981 GTTTTCATTTTTTGACTCACGATTTAATC-CTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * *
5184016 ATTTTCATTTTTTGACTCGTGGTTTAATCTTGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * * * *
5184051 GTTTTTGTTTTCTGACTCATGATTTAATTTCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5184086 TTTTTCATTTTTTGACTTACGGTTTAAT-TCCCATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCT-CGATC
* *** * *
5184121 GCTTTT-ATTCCCTGACTCATGATTTAATCCTGGA-C
1 -ATTTTCATTTTTTGACTCATGGTTTAAT-CTCGATC
* * * * *
5184156 ATTTTCATTTTTTTGATTCGTGATTTAATCCTTG-TT
1 ATTTTCA-TTTTTTGACTCATGGTTTAAT-CTCGATC
* * * * * * * *
5184192 GTTTTCATTTTCTGACTCGTGATTTAATTTTGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * ** * * * * **
5184227 GTTTTCATTATCTAAGACACGATCTAATCCCTCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * ** *
5184262 ATTTTCATTTTTTGACTCGTAGTTTTTTCTC-AGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* *
5184297 ATTTTCATTTTCTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * ** *
5184332 ATTTTCATTTTCTGACCCACAGTTT-ATC-CTGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * *
5184366 GTTTT--TTTTTTGACTGGTGGTTTAATC-CTGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * * * *
5184399 GTTTTCATTTTTTGACTTGTAGTTTGATTGGTAGTTTAATCCC
1 ATTTTCATTTTTTGACTCATGGTTT-AAT-CTCG----AT--C
* * *
5184442 AATCGTTTTCATTTTTTGACTTATGGTTTAAT-TCTGGTC
1 -AT--TTTC-ATTTTTTGACTCATGGTTTAATCTC-GATC
* * * * * * *
5184481 ATTTTCATTTTCTGATTTATGGTTTAATTTGGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5184516 TTTTTCATTTTTTGACTAATGGTTTAATCCCCATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** *
5184551 GTTTTCATTTTTTGACTCGCGGTTTAATCGCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* **
5184586 ATTTTCATTTTTTTTACTTGTGGTTTAATCTCG---
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGATC
* * *
5184619 A---TCATTTTTTGACTCGTGTTTTAATCAT-GATT
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * *
5184651 GTTTTC-TTTTCTTGACTCGTGACTTGAA-CCCGATGGC
1 ATTTTCATTTT-TTGACTCATG-GTTTAATCTCGAT--C
* * *
5184688 A--TTCATTTTCTGACTCATGGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5184721 ATTTT--TCTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * * *
5184745 GTTTTCATTTTCTAACTCGTAGCTTAAT-TCCAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * *
5184780 ATTTTCATTTTCTGGCTCATGGTTTAATC-CTGTTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * *
5184815 ATTTCTCTTTTTTTGAC-CGGTGGTTTAATCCCGGTC
1 ATTT-TCATTTTTTGACTC-ATGGTTTAATCTCGATC
* * *
5184851 ATTTCCATTTTCTGACTCATGGTTTAATCT-TAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * *
5184886 GTTTCCATTTTTTGGCTCATGCTTTAATCTCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5184921 ATTTTC-TTTTTTCGACTCAAT-GTTTAATC-CCACTT
1 ATTTTCATTTTTT-GACTC-ATGGTTTAATCTCGA-TC
*
5184956 GTTTTCATTTTTTGACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATC
5184985 CTAGTTGTTT
Statistics
Matches: 2178, Mismatches: 577, Indels: 439
0.68 0.18 0.14
Matches are distributed among these distances:
22 5 0.00
23 4 0.00
24 19 0.01
25 5 0.00
26 21 0.01
27 3 0.00
28 8 0.00
29 37 0.02
30 12 0.01
31 11 0.01
32 24 0.01
33 52 0.02
34 122 0.06
35 1328 0.61
36 459 0.21
37 33 0.02
38 7 0.00
39 1 0.00
41 2 0.00
44 2 0.00
45 1 0.00
46 5 0.00
47 17 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.51
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5182162 original size:106 final size:104
Alignment explanation
Indices: 5182012--5182392 Score: 285
Period size: 106 Copynumber: 3.6 Consensus size: 104
5182002 TTTTCAGTCA
* *
5182012 TTTTCATTTTTTGACTCATA-GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCC
1 TTTTCATTTTTTGACT--TAGGTTTAATCT-GGTCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * *
5182076 TGATCGTTTTTCTTTTTTTGACCGGTGGTTTAATCTTGGTTG
63 TGATCATTTTTCTTTTTTTGACCGGTAGTTTAATCATAGTAG
* *
5182118 TTTTCATTTTTTGACTTGAGGTTTAATCTGGCTCATTTTCATTTT-TCGACTCATGGCTTAA-AC
1 TTTTCATTTTTTGACTT-AGGTTTAATCTGG-TCATTTTCATTTTCT-GACTCATGGTTTAATCC
* * * *
5182181 -GAT-ATTATTTTCATTTTTCGACTC-ATCGTTTAATCATAGTCA-
63 TGATCA-T-TTTTCTTTTTTTGAC-CGGTAGTTTAATCATAGT-AG
* * * * * *
5182223 TTTTTATTTTTTGACCCGT-GGTCTAATCATGGTCGTTTTTCATTTTGTGACTCGTGGTTTAATA
1 TTTTCATTTTTTGA--CTTAGGTTTAATC-TGGTC-ATTTTCATTTTCTGACTCATGGTTTAAT-
** ** *
5182287 CCT-ATCATTTTTCTTTTTTTGATGGGTAGTTTAATCCCAATAG
61 CCTGATCATTTTTCTTTTTTTGACCGGTAGTTTAATCATAGTAG
* * * **
5182330 TTTTCATTTTCTGACATTTGGTTTAATCCAGGTCATTTTCATTTTCTGACTTGTGGTTTAATC
1 TTTTCATTTTTTGAC-TTAGGTTTAAT-CTGGTCATTTTCATTTTCTGACTCATGGTTTAATC
5182393 TAGGTTTTTT
Statistics
Matches: 217, Mismatches: 36, Indels: 45
0.73 0.12 0.15
Matches are distributed among these distances:
104 5 0.02
105 54 0.25
106 103 0.47
107 49 0.23
108 5 0.02
109 1 0.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (104 bp):
TTTTCATTTTTTGACTTAGGTTTAATCTGGTCATTTTCATTTTCTGACTCATGGTTTAATCCTGA
TCATTTTTCTTTTTTTGACCGGTAGTTTAATCATAGTAG
Found at i:5183082 original size:36 final size:35
Alignment explanation
Indices: 5183007--5183108 Score: 107
Period size: 36 Copynumber: 2.9 Consensus size: 35
5182997 TTAATTCCAG
* * ** *
5183007 TCATTTTCATTTTTTGACTCATGGTTTAATCTTGT
1 TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
* * *
5183042 TCATTTTTCTTTTTCTGAC-CGGTGGTTTAATCCCGA
1 TCA-TTTCCATTTTCTGACTC-ATGGTTTAATCCCGA
5183078 TCATTTCCATTTTCTGACTCATGGTTTAATC
1 TCATTTCCATTTTCTGACTCATGGTTTAATC
5183109 TTTGTCGTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
35 27 0.49
36 28 0.51
ACGTcount: A:0.17, C:0.20, G:0.13, T:0.51
Consensus pattern (35 bp):
TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
Done.