Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 32 of 109
Found at i:5183995 original size:107 final size:105
Alignment explanation
Indices: 5183439--5184149 Score: 327
Period size: 106 Copynumber: 6.7 Consensus size: 105
5183429 TAGCTAGTGG
* * ** * * * *
5183439 TTTAATCTC-AGTCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGAC
1 TTTAATCTCGA-TCGTTTTCATTTTTTGACTCACGATTTAATCCTGATCATTTTCATTTTCTGAC
* * *
5183503 T-AGTGATTTAATCCTAGTCAT-TTTTTA-TTTCTGACTCGTGA
65 TCA-TGATTTAATCATGGT--TGTTTTTATTTTCTGACTCATGA
* * * ** *
5183544 TTTAATCTC-AGTCGTTGTCATTTTTTGACTCATGATTTAATCCCGATTGTTTTCA-TTTCTTAA
1 TTTAATCTCGA-TCGTTTTCATTTTTTGACTCACGATTTAATCCTGATCATTTTCATTTTC-TGA
* * * * * * *
5183607 CCCATGATTTTAA-C-TCGATTGTATTCATTCTTTTGACTCGTGG
64 CTCATGA-TTTAATCAT-GGTTGTTTTTATT-TTCTGACTCATGA
* * * * ** *
5183650 TTTAATC-CTAGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGGTTGTTTTCATTTTTTGA
1 TTTAATCTCGA-TCGTTTTCATTTTTTGACTCACGATTTAATCCT-GATCATTTTCATTTTCTGA
** * * * * **
5183713 CTCGCGGTTTAATGTCTAT--CT-TTTTTGTTTTCTAACTTGTTG-
64 CTCATGATTTAA--TC-ATGGTTGTTTTTATTTTCTGAC-TCATGA
* * * * * * **
5183755 TTTAATATGGCTCATTTTCATTTTTTGACTCAC-AGCTTAATCCCGATCATTTTTCATTCCCTGA
1 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGA-TTTAATCCTGATCA-TTTTCATTTTCTGA
* * * * *
5183819 CAT-GTGGTTTAGTTTCA--GTGGTTTTGATTTTCTGACTCATGA
64 C-TCATGATTTA--ATCATGGTTGTTTTTATTTTCTGACTCATGA
* * ** * *
5183861 TTTATTCTC-AGTAGTTTTCATTTTTTGACAT-GTGATTTAAT-ATCGATCTTTTTCATTTCTCT
1 TTTAATCTCGA-TCGTTTTCATTTTTTGAC-TCACGATTTAATCCT-GATCATTTTCATTT-TCT
* * *
5183923 GACTTATGATTTAGTGATGGTTGTTTTTCATTTTCTGACATC-TGA
62 GACTCATGATTTAATCATGGTTGTTTTT-ATTTTCTGAC-TCATGA
*
5183968 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATCCTGATCATTTTCATTTTTTGACT
1 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATCCTGATCATTTTCATTTTCTGACT
* * * *
5184033 CGTGGTTTAATCTTGGTTGTTTTTGTTTTCTGACTCATGA
66 CATGATTTAATCATGGTTGTTTTTATTTTCTGACTCATGA
* * * * * * * **
5184073 TTTAATTTCGGTCTTTTTCATTTTTTGACTTACGGTTTAATTCC-CATCGCTTTT-ATTCCCTGA
1 TTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAA-TCCTGATC-ATTTTCATTTTCTGA
5184136 CTCATGATTTAATC
64 CTCATGATTTAATC
5184150 CTGGACATTT
Statistics
Matches: 459, Mismatches: 105, Indels: 84
0.71 0.16 0.13
Matches are distributed among these distances:
103 1 0.00
104 12 0.03
105 182 0.40
106 192 0.42
107 66 0.14
108 5 0.01
110 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (105 bp):
TTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATCCTGATCATTTTCATTTTCTGACT
CATGATTTAATCATGGTTGTTTTTATTTTCTGACTCATGA
Found at i:5185018 original size:36 final size:36
Alignment explanation
Indices: 5184856--5185036 Score: 106
Period size: 35 Copynumber: 5.1 Consensus size: 36
5184846 CGGTCATTTC
* ** ** * *
5184856 CATTTTCTGACTCATGGTTTAATCTTAGTCG-TTTC
1 CATTTTTTGACTCATACTTTAATCCCAGTTGTTTTT
* * * * **
5184891 CATTTTTTGGCTCATGCTTTAATCTC-GGTCATTTT
1 CATTTTTTGACTCATACTTTAATCCCAGTTGTTTTT
* *
5184926 C-TTTTTTCGACTCA-ATGTTTAATCCCACTTG-TTTT
1 CATTTTTT-GACTCATA-CTTTAATCCCAGTTGTTTTT
** *
5184961 CATTTTTTGACTCATGGTTTAATCCTAGTTGTTTTT
1 CATTTTTTGACTCATACTTTAATCCCAGTTGTTTTT
* *
5184997 CATTTTTT-AGCTCGTACTTTAATCCCAG-TCTTTTT
1 CATTTTTTGA-CTCATACTTTAATCCCAGTTGTTTTT
5185032 CATTT
1 CATTT
5185037 CTTAACACAT
Statistics
Matches: 115, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
34 7 0.06
35 75 0.65
36 33 0.29
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.52
Consensus pattern (36 bp):
CATTTTTTGACTCATACTTTAATCCCAGTTGTTTTT
Found at i:5185230 original size:71 final size:69
Alignment explanation
Indices: 5185118--5185480 Score: 246
Period size: 70 Copynumber: 5.1 Consensus size: 69
5185108 TTTTCGATCG
* * *
5185118 TTTTCATTTTTTGACTGGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCAATGTTTAATCTC
1 TTTTCATTTTTTGACTAGTGGTTTAAT-CCGATCATTTTCATTTTTTGACTC-GTGTTTAATCTC
5185183 AGTCGT
64 AGTCGT
*
5185189 TTTTC-TTTTTCT-AGCTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATC
1 TTTTCATTTTT-TGA-CTAGTGGTTTAATC-CGATCATTTTCATTTTTTGACTCGT-GTTTAAT-
*
5185252 CTTA-TCG-
61 CTCAGTCGT
* *
5185259 TTTTCATTTTTTGACTAGTGATTTAATCCTGGTCATTTT--TTATTTCTGACTCGTGATTTAATC
1 TTTTCATTTTTTGACTAGTGGTTTAATCC-GATCATTTTCATT-TTT-TGACTCGTG-TTTAATC
5185322 TCAGTCG-
62 TCAGTCGT
* * * ** * * *
5185329 TTGTCATTTCTTGACTCA-TGATTTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAAGC
1 TTTTCATTTTTTGACT-AGTGGTTTAATC-CGATCATTTTCATTTTTTGACTCGTG-TTT-AATC
* *
5185393 -CCGATTG-
62 TCAG-TCGT
* * * * *
5185400 TATTCATTCTTTTGACTCA-TGGATTAATCCTGGTCGTTTTCATTTTTTGACTCATGGTTTAATC
1 TTTTCATT-TTTTGACT-AGTGGTTTAATCC-GATCATTTTCATTTTTTGACTCGT-GTTTAATC
* *
5185464 TCGGTCAT
62 TCAGTCGT
5185472 TTTT-ATTTT
1 TTTTCATTTT
5185481 CTGATTTAAA
Statistics
Matches: 235, Mismatches: 34, Indels: 47
0.74 0.11 0.15
Matches are distributed among these distances:
68 2 0.01
69 7 0.03
70 98 0.42
71 78 0.33
72 49 0.21
73 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (69 bp):
TTTTCATTTTTTGACTAGTGGTTTAATCCGATCATTTTCATTTTTTGACTCGTGTTTAATCTCAG
TCGT
Found at i:5185234 original size:372 final size:374
Alignment explanation
Indices: 5184686--5185382 Score: 869
Period size: 372 Copynumber: 1.9 Consensus size: 374
5184676 GAACCCGATG
* * *
5184686 GCATTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCGTTTTC
1 GCATTCAGTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTCGATCGTTTTC
* * * *
5184751 ATTTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTCTGGCTCATGGTTTAATCCTGTTCA
66 ATTTTCTAACTCGTAGCTTAATCCCAATCATTTTCATTTTCTGACTCATGGTTTAATCCAGTTCA
* * *
5184816 TTTCTCTTTTTTTGACCGGTGGTTTAATCCCGGTCATTTCCATTTTCTGACTCATGGTTTAAT-C
131 TTTCTCTTTTTTAGACCAGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATCC
* * *
5184880 TTAGTCGTTTCCATTTTTTGGCTCA-TGCTTTAAT-CTCGGTCATTTTCTTTTTTC-GACTCAAT
196 TTA-TCGTTTCCATTTTTTGACT-AGTGATTTAATCCT-GGTCATTTT-TTATTTCTGACTC-AT
* * * * *
5184942 G-TTTAATCCCACTTGTTTTCATTTTTTGACTCATGGTTTAATCCTAG-TTGTTTTTCATTTTTT
256 GATTTAATCCCACTCGTTGTCATTTCTTGACTCATGATTTAAT-CTAGATTG-TTTTCATTTCTT
*
5185005 AGCTCGTACTTTAATCCCAGTCTTTTTCATTTCTTAACACATGATTCAAACTGGTT
319 AACTCGTACTTTAATCCCAGTCTTTTTCATTTCTTAACACATGATTCAAACTGGTT
* **
5185061 GCATTCAGTTTCTAACTCGTGGTTTAATCCTGATCA-TTTT-TTTTT-ATTTTTCGATCGTTTTC
1 GCATTCAGTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTCGATCGTTTTC
* * * * * *
5185123 ATTTTTTGACTGGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCAAT-GTTTAATCTCAG-T
66 ATTTTCTAACTCGTAGCTTAATCCCAATCATTTTCATTTTCTGACTC-ATGGTTTAATC-CAGTT
* * * * * *
5185186 CGTTTTTCTTTTTCTAG-CTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAA
129 CATTTCTCTTTTT-TAGACCAGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAA
* *
5185250 TCCTTATCGTTTTCATTTTTTGACTAGTGATTTAATCCTGGTCATTTTTTATTTCTGACTCGTGA
193 TCCTTATCGTTTCCATTTTTTGACTAGTGATTTAATCCTGGTCATTTTTTATTTCTGACTCATGA
* * *
5185315 TTTAATCTCAGTCGTTGTCATTTCTTGACTCATGATTTAATCTCGATTGTTTTCATTTCTTAACT
258 TTTAATCCCACTCGTTGTCATTTCTTGACTCATGATTTAATCTAGATTGTTTTCATTTCTTAACT
5185380 CGT
323 CGT
5185383 GATTTAAAGC
Statistics
Matches: 274, Mismatches: 39, Indels: 22
0.82 0.12 0.07
Matches are distributed among these distances:
371 29 0.11
372 193 0.70
373 17 0.06
374 4 0.01
375 31 0.11
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.51
Consensus pattern (374 bp):
GCATTCAGTTTCTAACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTCGATCGTTTTC
ATTTTCTAACTCGTAGCTTAATCCCAATCATTTTCATTTTCTGACTCATGGTTTAATCCAGTTCA
TTTCTCTTTTTTAGACCAGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATCC
TTATCGTTTCCATTTTTTGACTAGTGATTTAATCCTGGTCATTTTTTATTTCTGACTCATGATTT
AATCCCACTCGTTGTCATTTCTTGACTCATGATTTAATCTAGATTGTTTTCATTTCTTAACTCGT
ACTTTAATCCCAGTCTTTTTCATTTCTTAACACATGATTCAAACTGGTT
Found at i:5185288 original size:35 final size:35
Alignment explanation
Indices: 5185113--5185451 Score: 207
Period size: 35 Copynumber: 9.6 Consensus size: 35
5185103 TTTATTTTTC
* * *
5185113 GATCGTTTTCATTTTTTGACTGGTGGTTTAATCCC
1 GATCGTTTTCATTTTTTGACTAGTGATTTAATCCT
* * *
5185148 AATCATTTTCATTTTTTGACTCAATG-TTTAAT-CT
1 GATCGTTTTCATTTTTTGACT-AGTGATTTAATCCT
* *
5185182 CAGTCGTTTTTC-TTTTTCT-AGCTAGTGGTTTAAT-CT
1 GA-TCG-TTTTCATTTTT-TGA-CTAGTGATTTAATCCT
* * * *
5185218 CGATCATTTTCATTTTCTGACTCGTGGTTTAATCCT
1 -GATCGTTTTCATTTTTTGACTAGTGATTTAATCCT
*
5185254 TATCGTTTTCATTTTTTGACTAGTGATTTAATCCT
1 GATCGTTTTCATTTTTTGACTAGTGATTTAATCCT
* * *
5185289 GGTCATTTT--TTATTTCTGACTCGTGATTTAAT-CT
1 GATCGTTTTCATT-TTT-TGACTAGTGATTTAATCCT
* * *
5185323 CAGTCGTTGTCATTTCTTGACTCA-TGATTTAAT-CT
1 GA-TCGTTTTCATTTTTTGACT-AGTGATTTAATCCT
* * * * * *
5185358 CGATTGTTTTCATTTCTTAACTCGTGATTTAAAGCCC
1 -GATCGTTTTCATTTTTTGACTAGTGATTT-AATCCT
* *
5185395 GATTGTATTCATTCTTTTGACTCA-TGGA-TTAATCCT
1 GATCGTTTTCATT-TTTTGACT-AGT-GATTTAATCCT
*
5185431 GGTCGTTTTCATTTTTTGACT
1 GATCGTTTTCATTTTTTGACT
5185452 CATGGTTTAA
Statistics
Matches: 238, Mismatches: 43, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
33 2 0.01
34 7 0.03
35 156 0.66
36 58 0.24
37 13 0.05
38 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (35 bp):
GATCGTTTTCATTTTTTGACTAGTGATTTAATCCT
Found at i:5185488 original size:28 final size:28
Alignment explanation
Indices: 5185457--5185510 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
5185447 TGACTCATGG
* *
5185457 TTTAATCTCGGTCATTTTTATTTTCTGA
1 TTTAAACTCGATCATTTTTATTTTCTGA
* *
5185485 TTTAAACTCGATCTTTTTTGTTTTCT
1 TTTAAACTCGATCATTTTTATTTTCT
5185511 AACTCTTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.17, C:0.15, G:0.09, T:0.59
Consensus pattern (28 bp):
TTTAAACTCGATCATTTTTATTTTCTGA
Found at i:5185812 original size:35 final size:35
Alignment explanation
Indices: 5185764--5186465 Score: 334
Period size: 35 Copynumber: 19.9 Consensus size: 35
5185754 ATTTTTTGAA
* * *
5185764 CGTTTTCAATTTCTGACTCGTGGTTTAATCCCAAT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
* *
5185799 CGTTTTCATTTTCTGACTCAAT-GTTTTATCTCGAT
1 CGTTTTCATTTTCTGACTC-GTGGTTTAATCTCGAT
* *
5185834 CGTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGAT
1 CGTTTT-CATTTTCTGA-CTCGTGGTTTAATCTCGAT
* *
5185870 CATTTTCATTTTCTGACTCGTGGTTTAATC-CTTAT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTC-GAT
* * * * *
5185905 CGTTTTCATTTTTTGACTAGTGATTTAATCTTGGT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
* * *
5185940 CATTTT-TTATTTCTGACTCGTGATTTAATCTC-ATT
1 CGTTTTCAT-TTTCTGACTCGTGGTTTAATCTCGA-T
* * * * *
5185975 CCTTGTCA-TTTCTTGACTCATGATTTAATTTCGAT
1 CGTTTTCATTTTC-TGACTCGTGGTTTAATCTCGAT
* * * * *
5186010 TGTTTTCA-TTTCTTAACTCGTGATTTAAACCCGAT
1 CGTTTTCATTTTC-TGACTCGTGGTTTAATCTCGAT
* * * * *
5186045 TGTATTCATTTTTTTGACTCGTGGATTAATC-CTAGT
1 CGTTTTCA-TTTTCTGACTCGTGGTTTAATCTCGA-T
* * * *
5186081 TGTTTTTATTTTTTGACTCATGGTTTAATCTCGAT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
* * *
5186116 CGTTTTCATTTTCTGACTTGCGATTTAATCTCGAT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
* ** * * * * *
5186151 CTTTTTTGTTTTCTAACTCTTAGTTTAATAC-GGGT
1 CGTTTTCATTTTCTGACTCGTGGTTTAAT-CTCGAT
* * *** *
5186186 CATTTTCATTTTTTGACTCACAGTTTAATCCCGAT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
* * * * *
5186221 CATTTTCATTTTTTAACTCGTGTTTTAATTTC-AGT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGA-T
* ** * * * *
5186256 CATTTTTCATTCCCTGACAT-GTGATTTAGTTTCGGT
1 C-GTTTTCATTTTCTGAC-TCGTGGTTTAATCTCGAT
* * * ** * * *
5186292 -GTTTTGATTTTTTGGCTCACGATTTATTC-CCAGT
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGA-T
* * * *
5186326 AGTTTTCATTTTTTGACAT-GTGATTTAATATCGAT
1 CGTTTTCATTTTCTGAC-TCGTGGTTTAATCTCGAT
* * * * * **
5186361 CATTTTCATTTCTCTGATTCATGATATAATGACGAT
1 CGTTTTCATTT-TCTGACTCGTGGTTTAATCTCGAT
* ** * *
5186397 TGTTTTTCATTTTCTGACTTTTGATTTACTCTCGAT
1 CG-TTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
*
5186433 CGTTTTCATTTTTTGACTCGTGGTTTAATCTCG
1 CGTTTTCATTTTCTGACTCGTGGTTTAATCTCG
5186466 GTTGTTTTTG
Statistics
Matches: 502, Mismatches: 135, Indels: 60
0.72 0.19 0.09
Matches are distributed among these distances:
33 2 0.00
34 26 0.05
35 349 0.70
36 112 0.22
37 13 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
CGTTTTCATTTTCTGACTCGTGGTTTAATCTCGAT
Found at i:5185882 original size:648 final size:652
Alignment explanation
Indices: 5184956--5186204 Score: 2017
Period size: 648 Copynumber: 1.9 Consensus size: 652
5184946 AATCCCACTT
* * * * *
5184956 GTTTTCATTTTTTGACTCATGGTTTAATCCTAGTTGTTTTTCATTTTTTAGCTCGTACTTTAATC
1 GTTTTCATTTTCTGACTCATGATTTAATCCCAGTAGTTTTTCATTTTTTAACTCGTACTTTAATC
* ** * *
5185021 CCAGTCTTTTTCATTTCTTAACACATGATTCAAACTGGTTGCATTCAGTTTCTAACTCGTGGTTT
66 CCAATAATTTTCATTTCTTAACACATGATTCAAACTGGTCGCATTCAGTTTCTAACTCGTGGATT
* * * * *
5185086 AATCCTGATCATTTTTTTTTATTTTTCGATCGTTTTCATTTTTTGACTGGTGGTTTAATCCCAAT
131 AATCCCGATCATTTTTTTTTATTTTTCGAACGTTTTCAATTTCTGACTCGTGGTTTAATCCCAAT
* *
5185151 CATTTTCATTTTTTGACTCAATGTTTAATCTCAGTCGTTTTTCTTTTTCTAGCTAGTGGTTTAAT
196 CATTTTCATTTTCTGACTCAATGTTTAATCTCAGTCGTTTTCCTTTTTCTAGCTAGTGGTTTAAT
5185216 CTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTGAT
261 CTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTGAT
*
5185281 TTAATCCTGGTCATTTTTTATTTCTGACTCGTGATTTAATCTCAGTCGTTGTCATTTCTTGACTC
326 TTAATCCTGGTCATTTTTTATTTCTGACTCGTGATTTAATCTCAGTCCTTGTCATTTCTTGACTC
5185346 ATGATTTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAAGCCCGATTGTATTCATTCTT
391 ATGATTTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAA-CCCGATTGTATTCATTCTT
* * *
5185411 TTGACTCATGGATTAATCCTGGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGGTCATTTTT
455 TTGACTCATGGATTAATCCTAGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTC
5185476 A-TTT-T-C-T-GATTTAAACTCGATCTTTTTTGTTTTCTAACTCTTAGTTTAATACGAGTCATT
520 ATTTTCTACTTCGATTTAAACTCGATCTTTTTTGTTTTCTAACTCTTAGTTTAATACGAGTCATT
5185536 TTCATTTTTTAACTCGTGATTTAATTTCGGTCATTTTTCATTCCCTGACATGTGATTTAGTTTCG
585 TTCATTTTTTAACTCGTGATTTAATTTCGGTCATTTTTCATTCCCTGACATGTGATTTAGTTTCG
5185601 GTG
650 GTG
* * *
5185604 GTTTTGATTTTCTGACTCATGATTTATTCCCAGTAG-TTTTCATTTTTTAACTTGTACTTTAATC
1 GTTTTCATTTTCTGACTCATGATTTAATCCCAGTAGTTTTTCATTTTTTAACTCGTACTTTAATC
* * *
5185668 CCAATAATTTTCATTTCTTGACTCATGATTCAAACTGGTCGCATTCATTTTCTAACTCGTGGATT
66 CCAATAATTTTCATTTCTTAACACATGATTCAAACTGGTCGCATTCAGTTTCTAACTCGTGGATT
* * *
5185733 ACTCCCGGTCATTTTTTTTTCATTTTTTGAACGTTTTCAATTTCTGACTCGTGGTTTAATCCCAA
131 AATCCCGATCATTTTTTTTT-ATTTTTCGAACGTTTTCAATTTCTGACTCGTGGTTTAATCCCAA
* *
5185798 TCGTTTTCATTTTCTGACTCAATGTTTTATCTC-GATCGTTTTCCTTTTTCTAGCTAGTGGTTTA
195 TCATTTTCATTTTCTGACTCAATGTTTAATCTCAG-TCGTTTTCCTTTTTCTAGCTAGTGGTTTA
5185862 ATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTG
259 ATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTG
* *
5185927 ATTTAATCTTGGTCATTTTTTATTTCTGACTCGTGATTTAATCTCATTCCTTGTCATTTCTTGAC
324 ATTTAATCCTGGTCATTTTTTATTTCTGACTCGTGATTTAATCTCAGTCCTTGTCATTTCTTGAC
* *
5185992 TCATGATTTAATTTCGATTGTTTTCATTTCTTAACTCGTGATTTAAACCCGATTGTATTCATTTT
389 TCATGATTTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAACCCGATTGTATTCATTCT
* * * *
5186057 TTTGACTCGTGGATTAATCCTAGTTGTTTTTATTTTTTGACTCATGGTTTAATCTCGATCGTTTT
454 TTTGACTCATGGATTAATCCTAGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTT
* *
5186122 CATTTTCTGACTTGCGATTTAATCTCGATCTTTTTTGTTTTCTAACTCTTAGTTTAATACGGGTC
519 CATTTTCT-ACTT-CGATTTAAACTCGATCTTTTTTGTTTTCTAACTCTTAGTTTAATACGAGTC
*
5186187 ATTTTCATTTTTTGACTC
582 ATTTTCATTTTTTAACTC
5186205 ACAGTTTAAT
Statistics
Matches: 549, Mismatches: 43, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
647 178 0.32
648 303 0.55
649 1 0.00
651 1 0.00
652 1 0.00
654 65 0.12
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (652 bp):
GTTTTCATTTTCTGACTCATGATTTAATCCCAGTAGTTTTTCATTTTTTAACTCGTACTTTAATC
CCAATAATTTTCATTTCTTAACACATGATTCAAACTGGTCGCATTCAGTTTCTAACTCGTGGATT
AATCCCGATCATTTTTTTTTATTTTTCGAACGTTTTCAATTTCTGACTCGTGGTTTAATCCCAAT
CATTTTCATTTTCTGACTCAATGTTTAATCTCAGTCGTTTTCCTTTTTCTAGCTAGTGGTTTAAT
CTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTGAT
TTAATCCTGGTCATTTTTTATTTCTGACTCGTGATTTAATCTCAGTCCTTGTCATTTCTTGACTC
ATGATTTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAACCCGATTGTATTCATTCTTT
TGACTCATGGATTAATCCTAGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCA
TTTTCTACTTCGATTTAAACTCGATCTTTTTTGTTTTCTAACTCTTAGTTTAATACGAGTCATTT
TCATTTTTTAACTCGTGATTTAATTTCGGTCATTTTTCATTCCCTGACATGTGATTTAGTTTCGG
TG
Found at i:5186066 original size:176 final size:175
Alignment explanation
Indices: 5185764--5186147 Score: 400
Period size: 176 Copynumber: 2.2 Consensus size: 175
5185754 ATTTTTTGAA
* * * * *
5185764 CGTTTTCAATTTCTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTGACTCAATGTTTTATC
1 CGTTTTC-ATTTCTGACTCGTGATTTAATCTCAATCCTTGTCATTTTCTGACTCAATGTTTAATC
* * * * * * * *
5185829 TCGATCGTTTTCCTTTTTCTAGCTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGT
65 TCGATCGTTTTCATTTCTCTAACTAGTGATTTAAACCCGATCATATTCATTTTCTGACTCGTGGA
* *
5185894 TTAATCCTTA-TCGTTTTCATTTTTTGACT-AGTGATTTAATCTTGGT
130 TTAATCC-TAGTCGTTTTCATTTTTTGACTCA-TGATTTAATCTCGAT
* * *
5185940 CATTTTTTATTTCTGACTCGTGATTTAATCTCATTCCTTGTCA-TTTCTTGACTC-ATGATTTAA
1 C-GTTTTCATTTCTGACTCGTGATTTAATCTCAATCCTTGTCATTTTC-TGACTCAATG-TTTAA
* * * ** *
5186003 TTTCGATTGTTTTCATTTCT-TAACTCGTGATTTAAACCCGATTGTATTCATTTTTTTGACTCGT
63 TCTCGATCGTTTTCATTTCTCTAACTAGTGATTTAAACCCGATCATATTCA-TTTTCTGACTCGT
* * *
5186067 GGATTAATCCTAGTTGTTTTTATTTTTTGACTCATGGTTTAATCTCGAT
127 GGATTAATCCTAGTCGTTTTCATTTTTTGACTCATGATTTAATCTCGAT
* *
5186116 CGTTTTCATTTTCTGACTTGCGATTTAATCTC
1 CGTTTTCA-TTTCTGACTCGTGATTTAATCTC
5186148 GATCTTTTTT
Statistics
Matches: 170, Mismatches: 31, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
175 36 0.21
176 129 0.76
177 5 0.03
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (175 bp):
CGTTTTCATTTCTGACTCGTGATTTAATCTCAATCCTTGTCATTTTCTGACTCAATGTTTAATCT
CGATCGTTTTCATTTCTCTAACTAGTGATTTAAACCCGATCATATTCATTTTCTGACTCGTGGAT
TAATCCTAGTCGTTTTCATTTTTTGACTCATGATTTAATCTCGAT
Found at i:5186168 original size:141 final size:140
Alignment explanation
Indices: 5185768--5186169 Score: 338
Period size: 141 Copynumber: 2.9 Consensus size: 140
5185758 TTTGAACGTT
* * * * * * * *
5185768 TTCAATTTCTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTGACTCAAT-GTTTTATCTCG
1 TTCATTTTTTGACTCGTGGATTAATCCTAGTTGTTTTTATTTTCTGACTC-ATGGTTTAATCTCG
* * * * * *
5185832 ATCGTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTT
65 ATCGTTTT-CATTTTCTGA-CTAGTGATTTAATCTCGATCTTTTTTATTTTCTAACTCGTGATTT
* ** *
5185896 AATCCTTATCGTT
128 AAACCCGATCGTA
* * * * *
5185909 TTCATTTTTTGACTAGT-GATTTAATCTTGGTCAT-TTTTTA-TTTCTGACTCGTGATTTAATCT
1 TTCATTTTTTGACTCGTGGA-TTAATCCTAGT--TGTTTTTATTTTCTGACTCATGGTTTAATCT
* * * *
5185971 C-ATTCCTTGTCA-TTTCTTGACTCA-TGATTTAATTTCGAT-TGTTTTCA-TTTCTTAACTCGT
63 CGA-TCGTTTTCATTTTC-TGACT-AGTGATTTAATCTCGATCT-TTTTTATTTTC-TAACTCGT
*
5186031 GATTTAAACCCGATTGTA
123 GATTTAAACCCGATCGTA
*
5186049 TTCATTTTTTTGACTCGTGGATTAATCCTAGTTGTTTTTATTTTTTGACTCATGGTTTAATCTCG
1 TTCA-TTTTTTGACTCGTGGATTAATCCTAGTTGTTTTTATTTTCTGACTCATGGTTTAATCTCG
* * *
5186114 ATCGTTTTCATTTTCTGACTTGCGATTTAATCTCGATCTTTTTTGTTTTCTAACTC
65 ATCGTTTTCATTTTCTGACTAGTGATTTAATCTCGATCTTTTTTATTTTCTAACTC
5186170 TTAGTTTAAT
Statistics
Matches: 203, Mismatches: 39, Indels: 38
0.73 0.14 0.14
Matches are distributed among these distances:
139 9 0.04
140 55 0.27
141 122 0.60
142 17 0.08
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (140 bp):
TTCATTTTTTGACTCGTGGATTAATCCTAGTTGTTTTTATTTTCTGACTCATGGTTTAATCTCGA
TCGTTTTCATTTTCTGACTAGTGATTTAATCTCGATCTTTTTTATTTTCTAACTCGTGATTTAAA
CCCGATCGTA
Found at i:5186473 original size:35 final size:35
Alignment explanation
Indices: 5185765--5186653 Score: 327
Period size: 35 Copynumber: 25.3 Consensus size: 35
5185755 TTTTTTGAAC
* * * * * *
5185765 GTTTTCAATTTCTGACTCGTGGTTTAATCCCAATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * * *
5185800 GTTTTCATTTTCTGACTCAATG-TTTTATCTCGATC
1 GTTTTCATTTTTTGACTC-GTGATTTAATCTCGATT
* * * *
5185835 GTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGATC
1 GTTTTCATTTTT-TGA-CTCGTGATTTAATCTCGATT
* * * * *
5185871 ATTTTCATTTTCTGACTCGTGGTTTAATC-CTTATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTC-GATT
* *
5185906 GTTTTCATTTTTTGACTAGTGATTTAATCTTGGTCATT
1 GTTTTCATTTTTTGACTCGTGATTTAATC-TCG--ATT
*
5185944 -TTTT-A-TTTCTGACTCGTGATTTAATCTC-ATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * * * *
5185975 CCTTGTCATTTCTTGACTCATGATTTAATTTCGATT
1 -GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * * *
5186011 GTTTTCATTTCTTAACTCGTGATTTAAACCCGATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* *
5186046 GTATTCATTTTTTTGACTCGTGGA-TTAATC-CTAGTT
1 GTTTTCA-TTTTTTGACTCGT-GATTTAATCTCGA-TT
* * * *
5186082 GTTTTTATTTTTTGACTCATGGTTTAATCTCGATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * *
5186117 GTTTTCATTTTCTGACTTGCGATTTAATCTCGATCT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGAT-T
** * * * * * *
5186153 -TTTTTGTTTTCTAACTC-TTAGTTTAATAC-GGGTC
1 GTTTTCATTTTTTGACTCGTGA-TTTAAT-CTCGATT
* ** * *
5186187 ATTTTCATTTTTTGACTC-ACAGTTTAATCCCGATC
1 GTTTTCATTTTTTGACTCGTGA-TTTAATCTCGATT
* * * *
5186222 ATTTTCATTTTTTAACTCGTGTTTTAATTTC-AGTCAT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-T--T
*** * * *
5186259 -TTTTCATTCCCTGACAT-GTGATTTAGTTTCG-GT
1 GTTTTCATTTTTTGAC-TCGTGATTTAATCTCGATT
* * ** * * *
5186292 GTTTTGATTTTTTGGCTCACGATTTATTC-CCAGTA
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-TT
* *
5186327 GTTTTCATTTTTTGACAT-GTGATTTAATATCGATC
1 GTTTTCATTTTTTGAC-TCGTGATTTAATCTCGATT
* * * * * **
5186362 ATTTTCATTTCTCTGATTCATGATATAATGACGATT
1 GTTTTCATTT-TTTGACTCGTGATTTAATCTCGATT
* ** * *
5186398 GTTTTTCATTTTCTGACTTTTGATTTACTCTCGATC
1 G-TTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* *
5186434 GTTTTCATTTTTTGACTCGTGGTTTAATCTCGGTT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
** * * * *
5186469 GTTTTTGTTTTTTGACTCATGATTTAATTTTGGTCT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGAT-T
* * *
5186505 -TTTTCATTTTTTAACTTACG-G-TTTAAT-TCCCATC
1 GTTTTCATTTTTTGAC-T-CGTGATTTAATCT-CGATT
*** * * *
5186539 GCTTTT-ATTCCCTGACTCATGATTTAATC-CTGGTC
1 G-TTTTCATTTTTTGACTCGTGATTTAATCTC-GATT
* * * * * *
5186574 ATTTTCGTTTTTCTTATTCTTGATTTAATCCTTG-TT
1 GTTTTCATTTTT-TGACTCGTGATTTAAT-CTCGATT
* * *
5186610 GTTTTCATTTTTTGACTCATGATTTAATTTTGATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
5186645 GTTTTCATT
1 GTTTTCATT
5186654 ATCTAAAACA
Statistics
Matches: 632, Mismatches: 167, Indels: 110
0.70 0.18 0.12
Matches are distributed among these distances:
31 3 0.00
33 7 0.01
34 35 0.06
35 419 0.66
36 147 0.23
37 19 0.03
38 2 0.00
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (35 bp):
GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
Found at i:5186706 original size:21 final size:20
Alignment explanation
Indices: 5186680--5186730 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
5186670 AATCGCTCTC
5186680 ATTTTCTTTTTCTGACTTATG
1 ATTTTCTTTTT-TGACTTATG
*
5186701 ATTTTCATTTTTTGACTTGTG
1 ATTTTC-TTTTTTGACTTATG
5186722 ATTTT-TTTT
1 ATTTTCTTTT
5186731 CAATCATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 4 0.14
21 19 0.68
22 5 0.18
ACGTcount: A:0.14, C:0.10, G:0.10, T:0.67
Consensus pattern (20 bp):
ATTTTCTTTTTTGACTTATG
Found at i:5186772 original size:35 final size:35
Alignment explanation
Indices: 5186701--5187238 Score: 322
Period size: 35 Copynumber: 15.3 Consensus size: 35
5186691 CTGACTTATG
* ** * *
5186701 ATTTTCATTTTTTGACTTGTGATTTTTTTTCAATC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
* * *
5186736 ATTTTCATTTTCTGACTTATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
* *** *
5186771 ATTTTCATTTTCTGACCCATGGTTTAATC-CTAATC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTC-GATC
* * * *
5186806 GTTTTTCTTTTTTTGACTGGTGGTTTAATCT---TT
1 -ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
* * *
5186839 ATTTTCATTTTTTGGCTTGTGGTTTAATCTTGCTC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
* ** * ** *
5186874 ATTTTCATTTTTCGACTCATGGCTTAATCGGGATT
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
** *
5186909 ATTTTCATTTTTTGACTCATGGTTTAATCATAG-TC
1 ATTTTCATTTTTTGACTTGTGGTTTAATC-TCGATC
* * * *
5186944 ATTTTCATTTTTTGACCTATGGTCTAATCAT-GGTC
1 ATTTTCATTTTTTGACTTGTGGTTTAATC-TCGATC
* * * * *
5186979 GTTTTTCATTTTTTGACTGGTGGTTTAATCCCTATT
1 -ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
* * * *
5187015 ATTTTTCTTTTTTTGA-TGGGTAGTTTAATC-CTAATC
1 A-TTTTCATTTTTTGACT-TGTGGTTTAATCTC-GATC
* * * **
5187051 GTTTTCAGTTTCTGACTTGTGGTTTAATC-CTGGCC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTC-GATC
* * * *
5187086 GTTTTCATTTTTTGACTAT-TGGTTTAATCCCTATT
1 ATTTTCATTTTTTGACT-TGTGGTTTAATCTCGATC
* * * * * *
5187121 GTTTTCATTTTTAGACTCGCGGTTTAATCGCGGTC
1 ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
*
5187156 ATTTTCATTTTTTTGACTTGTGGTTTAATCTCGGTC
1 ATTTTCA-TTTTTTGACTTGTGGTTTAATCTCGATC
* * * *
5187192 GTTCTTCATTTTTTGACTCGTGTTTTAATCACGATC
1 ATT-TTCATTTTTTGACTTGTGGTTTAATCTCGATC
*
5187228 GTTTTCATTTT
1 ATTTTCATTTT
5187239 CTAACTCGTG
Statistics
Matches: 397, Mismatches: 87, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
32 26 0.07
33 1 0.00
34 2 0.01
35 233 0.59
36 131 0.33
37 4 0.01
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.53
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTTGTGGTTTAATCTCGATC
Found at i:5187246 original size:35 final size:35
Alignment explanation
Indices: 5186737--5187562 Score: 293
Period size: 35 Copynumber: 23.8 Consensus size: 35
5186727 TTTTCAATCA
** * * *
5186737 TTTTCATTTTCTGACTTATAGTTTAATCTCGATCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * **
5186772 TTTTCATTTTCTGACCCATGGTTTAATCCTAATCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * * * **
5186807 TTTTTCTTTTTTTGACTGGTGGTTTAAT--C-TTTA
1 -TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * * ** * *
5186840 TTTTCATTTTTTGGCTTGTGGTTTAATCTTGCTCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * ** **
5186875 TTTTCATTTT-TCGACTCATGGCTTAATCGGGATTA
1 TTTTCATTTTCT-GACTCGTGGTTTAATCCCGATCG
* * ** *
5186910 TTTTCATTTTTTGACTCATGGTTTAAT-CATAGTCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGA-TCG
* * * ** *
5186945 TTTTCATTTTTTGAC-CTATGGTCTAATCATGGTCG
1 TTTTCATTTTCTGACTC-GTGGTTTAATCCCGATCG
* * * **
5186980 TTTTTCATTTTTTGACTGGTGGTTTAATCCCTATTAT
1 -TTTTCATTTTCTGACTCGTGGTTTAATCCCGA-TCG
* * * * **
5187017 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATCG
1 TTTTCATTTTCTGACT-CGTGGTTTAATCCCGATCG
* * * **
5187052 TTTTCAGTTTCTGACTTGTGGTTTAATCCTGGCCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* ** * *
5187087 TTTTCATTTTTTGACTATTGGTTTAATCCCTATTG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * * *
5187122 TTTTCATTTT-TAGACTCGCGGTTTAATCGCGGTCA
1 TTTTCATTTTCT-GACTCGTGGTTTAATCCCGATCG
* * * *
5187157 TTTTCATTTTTTTGACTTGTGGTTTAATCTCGGTCG
1 TTTTCA-TTTTCTGACTCGTGGTTTAATCCCGATCG
* * *
5187193 TTCTTCATTTTTTGACTCGTGTTTTAATCACGATCG
1 TT-TTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* *
5187229 TTTTCATTTTCTAACTCGTGATTTGAA-CCCGATCG
1 TTTTCATTTTCTGACTCGTGGTTT-AATCCCGATCG
** * * *
5187264 CATTCATTTTCTGACTCATGGTTTAATCCCAATCAT
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATC-G
*
5187300 TTTTC-TTTT-TCA-T--T--TTT--T---GATCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
* * * * *
5187323 TTTTCATTTTCTAACTCGTAGCTTAACTCCAG-TCA
1 TTTTCATTTTCTGACTCGTGGTTTAA-TCCCGATCG
* * * ** * *
5187358 TTTTCATTTTATGACTCATTGTTTAATCTTGTTCAT
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGATC-G
* * * *
5187394 TTTTCTTTTTTTGACTGGTGGTTTAATCCC-AGTCA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGA-TCG
* * **
5187429 TTTCCATTTTCTGACTCATGGTTTAAT-CTTAGTCG
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGA-TCG
* * * ** **
5187464 TTTCCATTTTCTGGCTCGTGCTTTAAT-CTAAGTAA
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCGA-TCG
* * *
5187499 TTTTCTTTTTCTGACTCAAT-GTTTAATCCC-ACTTG
1 TTTTCATTTTCTGACTC-GTGGTTTAATCCCGA-TCG
* *
5187534 TTTTCATTTTTTGACTCATGGTTTAATCC
1 TTTTCATTTTCTGACTCGTGGTTTAATCC
5187563 AGGTTGTTTT
Statistics
Matches: 601, Mismatches: 149, Indels: 82
0.72 0.18 0.10
Matches are distributed among these distances:
23 5 0.01
24 7 0.01
25 2 0.00
26 1 0.00
27 1 0.00
28 1 0.00
29 3 0.00
30 2 0.00
31 1 0.00
32 24 0.04
33 3 0.00
34 14 0.02
35 372 0.62
36 159 0.26
37 6 0.01
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCCCGATCG
Found at i:5187385 original size:94 final size:94
Alignment explanation
Indices: 5187224--5187403 Score: 222
Period size: 94 Copynumber: 1.9 Consensus size: 94
5187214 TTTTAATCAC
* * *
5187224 GATCGTTTTCATTTTCTAACTCGTGATTTGAACCCGATCGCATTCATTTTCTGACTCATGGTTTA
1 GATCGTTTTCATTTTCTAACTCGTGACTTGAACCCGATCACATTCATTTTATGACTCATGGTTTA
5187289 ATCCCAATCATTTTTCTTTTTCATTTTTT
66 ATCCCAATCATTTTTCTTTTTCATTTTTT
** *
5187318 GATCGTTTTCATTTTCTAACTCGT-AGCTT-AACTCC-AGTCATTTTCATTTTATGACTCATTGT
1 GATCGTTTTCATTTTCTAACTCGTGA-CTTGAAC-CCGA-TCACATTCATTTTATGACTCATGGT
****
5187380 TTAATCTTGTTCATTTTTCTTTTT
63 TTAATCCCAATCATTTTTCTTTTT
5187404 TTGACTGGTG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 5 0.07
94 68 0.93
ACGTcount: A:0.19, C:0.20, G:0.10, T:0.51
Consensus pattern (94 bp):
GATCGTTTTCATTTTCTAACTCGTGACTTGAACCCGATCACATTCATTTTATGACTCATGGTTTA
ATCCCAATCATTTTTCTTTTTCATTTTTT
Found at i:5187737 original size:35 final size:35
Alignment explanation
Indices: 5187691--5188069 Score: 162
Period size: 35 Copynumber: 10.6 Consensus size: 35
5187681 TCATTTTTCG
5187691 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCCCA
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCCCA
* * *
5187726 ATCGTTTTCATTTTCTGACTCAAT-GTTTAATCTCT
1 ATCGTTTTCATTTTCTGACTC-GTGGTTTAATCCCA
** * *
5187761 ATAATTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCA
1 ATCGTTTT-CATTTTCTGA-CTCGTGGTTTAATC-C---CA
* * **
5187801 TTTTCATTTTCATTTTCTGACTCGTGGTTTAATCCTT
1 --ATCGTTTTCATTTTCTGACTCGTGGTTTAATCCCA
* * *
5187838 ATCGTTTTCAATTTT-TGACTAGTGATTTAATCCTA
1 ATCGTTTTC-ATTTTCTGACTCGTGGTTTAATCCCA
* * * * * **
5187873 GTCATTTTTTATTTT-TGACTCATGATTTAATCTTA
1 ATC-GTTTTCATTTTCTGACTCGTGGTTTAATCCCA
* * * * * *
5187908 GTCCTTGTCA-TTTCTTGACTCATGATTTAATCCCG
1 ATCGTTTTCATTTTC-TGACTCGTGGTTTAATCCCA
* * * *
5187943 ATTGTTTTCA-TTTCTTAACTCGTGATTTAAACCCA
1 ATCGTTTTCATTTTC-TGACTCGTGGTTTAATCCCA
* * * * **
5187978 ATTGTATTCATTTTTTTTGACTCGTGGATTAATCCTGG
1 ATCGTTTTCA--TTTTCTGACTCGTGGTTTAATCC-CA
* * * * *
5188016 A-CGTTTTTATTTTTTGACTCATGGTTTAAT-TCG
1 ATCGTTTTCATTTTCTGACTCGTGGTTTAATCCCA
* *
5188049 GTTGTTTTCATTTTCTGACTC
1 ATCGTTTTCATTTTCTGACTC
5188070 ACGATTTAAT
Statistics
Matches: 264, Mismatches: 60, Indels: 41
0.72 0.16 0.11
Matches are distributed among these distances:
33 4 0.02
34 20 0.08
35 161 0.61
36 27 0.10
37 19 0.07
38 4 0.02
40 2 0.01
41 20 0.08
42 7 0.03
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (35 bp):
ATCGTTTTCATTTTCTGACTCGTGGTTTAATCCCA
Found at i:5188056 original size:34 final size:35
Alignment explanation
Indices: 5187807--5188151 Score: 110
Period size: 35 Copynumber: 9.8 Consensus size: 35
5187797 GTCATTTTCA
* * *
5187807 TTTTCATTTTCTGACTCGTGGTTTAATCCT-TATCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGA-CG
* * * * *
5187842 TTTTCAATTTTTGACT-AGTGATTTAATCCTAGTCA
1 TTTTCATTTTTTGACTCA-TGGTTTAATCCTGGACG
* * * * * *
5187877 TTTT-TTATTTTTGACTCATGATTTAATCTTAGTCC
1 TTTTCAT-TTTTTGACTCATGGTTTAATCCTGGACG
* * * * *
5187912 TTGTCATTTCTTGACTCATGATTTAATCC-CGATTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGA-CG
* * * * * ** *
5187947 TTTTCATTTCTTAACTCGTGATTTAAACC-CAATTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGA-CG
* * *
5187982 TATTCATTTTTTTTGACTCGTGGATTAATCCTGGACG
1 TTTTCA--TTTTTTGACTCATGGTTTAATCCTGGACG
* * **
5188019 TTTTTATTTTTTGACTCATGGTTTAATTC-GGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGACG
* * * * *
5188053 TTTTCATTTTCTGACTCACGATTTAAT-CTCGATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGA-CG
** * * * * * * * *
5188088 TTTTTGTTTTCTAACTCTTAGTTTAATACGGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCTGGACG
**
5188123 TTTTCATTTTTTGACTCACAGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCC
5188152 CGATCATATT
Statistics
Matches: 232, Mismatches: 66, Indels: 24
0.72 0.20 0.07
Matches are distributed among these distances:
33 1 0.00
34 28 0.12
35 175 0.75
36 4 0.02
37 23 0.10
38 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCTGGACG
Found at i:5188584 original size:36 final size:35
Alignment explanation
Indices: 5188520--5188622 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 35
5188510 TTTTTTTCCC
* ** **
5188520 TGACGCATGATTTAATCTAGGTCATTTTCATTTTT
1 TGACTCATGATTTAATCTTTGTTGTTTTCATTTTT
* *
5188555 CTTATTCATGATTTAATCTTTGTTGTTTTCATTTTT
1 -TGACTCATGATTTAATCTTTGTTGTTTTCATTTTT
*
5188591 TGACTCGTGATTTAAT-TTTGGTTGTTTTCATT
1 TGACTCATGATTTAATCTTT-GTTGTTTTCATT
5188623 ATCTAAGGCA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
34 3 0.05
35 25 0.45
36 28 0.50
ACGTcount: A:0.18, C:0.12, G:0.14, T:0.56
Consensus pattern (35 bp):
TGACTCATGATTTAATCTTTGTTGTTTTCATTTTT
Found at i:5188615 original size:35 final size:35
Alignment explanation
Indices: 5187884--5188622 Score: 204
Period size: 35 Copynumber: 21.0 Consensus size: 35
5187874 TCATTTTTTA
* ** *
5187884 TTTTTGACTCATGATTTAATCTT-AGTCCTTGTCAT
1 TTTTTGACTCATGATTTAAT-TTCGGTTGTTTTCAT
* ** *
5187919 TTCTTGACTCATGATTTAATCCCGATTGTTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * * *** ** *
5187954 TTCTTAACTCGTGATTTAAACCCAATTGTATTCATTT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCA--T
* * ** *
5187991 TTTTTGACTCGTGGA-TTAA-TCCTGGACGTTTTTAT
1 TTTTTGACTCAT-GATTTAATTTC-GGTTGTTTTCAT
*
5188026 TTTTTGACTCATGGTTTAA-TTCGGTTGTTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * * * **
5188060 TTTCTGACTCACGATTTAATCTCGATCT-TTTTTGT
1 TTTTTGACTCATGATTTAATTTCGGT-TGTTTTCAT
* * * * **
5188095 TTTCTAACTC-TTAGTTTAA-TACGGGTCATTTTCAT
1 TTTTTGACTCATGA-TTTAATTTC-GGTTGTTTTCAT
* ** * ** * *
5188130 TTTTTGACTCA-CAGTTTAATCCCGATCATATTC-G
1 TTTTTGACTCATGA-TTTAATTTCGGTTGTTTTCAT
* *
5188164 TTTTTAACTCGTGATTTAATTTCGGTCAT-TTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGT--TGTTTTCAT
*** * * * *
5188200 TCCCTGACAT-GTGATTTAGTTTCGGTGGTTTTGAT
1 TTTTTGAC-TCATGATTTAATTTCGGTTGTTTTCAT
* * * *
5188235 TTTCTGACTCATGATTT-ATTCCCAGTAGTTTTCAT
1 TTTTTGACTCATGATTTAATT-TCGGTTGTTTTCAT
* * * **
5188270 TTTTTGACAT-GTGATTTAATATCGATCATTTTCAT
1 TTTTTGAC-TCATGATTTAATTTCGGTTGTTTTCAT
* * * **
5188305 TTCTCTGATTCATGTTTTAATGACGGTTGTTTTTCAT
1 TT-TTTGACTCATGATTTAATTTCGGTTG-TTTTCAT
* ** * * * **
5188342 TTTCTGACTTGTGATTTACTCTCGATCATTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * **
5188377 TTTTTGACTCA-CAGTTTGA--TCGTGATCATTTTCAT
1 TTTTTGACTCATGA-TTTAATTTCG-G-TTGTTTTCAT
* * **
5188412 TTTTTGACTCATGGTTTAATCTCGGTTGTTTTTGT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * *
5188447 TTTCTAACTCATGATTTAATTTCAG-TGTTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * * * **
5188481 TTTTTGACTTACGGTTTAATTCCCATTGCTTTT--T
1 TTTTTGACTCATGATTTAATTTCGGTTG-TTTTCAT
** * * * **
5188515 TTCCCTGACGCATGATTTAATCTAGGTCATTTTCAT
1 TT-TTTGACTCATGATTTAATTTCGGTTGTTTTCAT
* * *
5188551 TTTTCTTATTCATGATTTAATCTT-TGTTGTTTTCAT
1 TTTT-TGACTCATGATTTAAT-TTCGGTTGTTTTCAT
* *
5188587 TTTTTGACTCGTGATTTAATTTTGGTTGTTTTCAT
1 TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
5188622 T
1 T
5188623 ATCTAAGGCA
Statistics
Matches: 506, Mismatches: 158, Indels: 80
0.68 0.21 0.11
Matches are distributed among these distances:
33 3 0.01
34 83 0.16
35 293 0.58
36 91 0.18
37 34 0.07
38 2 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTTGACTCATGATTTAATTTCGGTTGTTTTCAT
Found at i:5188692 original size:21 final size:21
Alignment explanation
Indices: 5188649--5188695 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
5188639 AATCCCTCTA
*
5188649 ATTTTCATTTTCTGACTTATG
1 ATTTTCATTTTCTGACTCATG
* * *
5188670 ATTTTCATTTTTTGGCTCGTG
1 ATTTTCATTTTCTGACTCATG
5188691 ATTTT
1 ATTTT
5188696 TTCTCAGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.13, G:0.13, T:0.60
Consensus pattern (21 bp):
ATTTTCATTTTCTGACTCATG
Found at i:5188742 original size:35 final size:35
Alignment explanation
Indices: 5188703--5189245 Score: 290
Period size: 35 Copynumber: 15.6 Consensus size: 35
5188693 TTTTTCTCAG
* ** *
5188703 TCATTTTCATTTTCTGACTCATAATTTAATCTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
* * *
5188738 TCATTTTTATTTTTTGACCCATGGTTTAATCTTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
* *
5188773 TCGTTTTTCTTTTTTTGACT-AGTGGTTTAATCTTGG-
1 TC-ATTTTCATTTTTTGACTCA-TGGTTTAATC-TGGA
** ** *
5188809 TTGTTTTCATTTTTTGACTTTTGGTTTAATCTGGC
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
* * *
5188844 TCATTTTCATTTTTCGACTCATCGCTTAAT-TGGGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-GGA
* *
5188879 TTATTTTCATTTTTTGACTCATGGTTTAATCATAG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TGGA
* *
5188914 TCATTTTCATTTTTTGAC-CTGTGGTCTAATCATGG-
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATC-TGGA
** **
5188949 TCATTTTCATTTTTTGACTTGTGGTTTAATCTCTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
* * * ***
5188984 TTATTTT--TTTTAT-AGGT-A--GTTTAATCCCAA
1 TCATTTTCATTTTTTGA-CTCATGGTTTAATCTGGA
* * ** *
5189014 TCGTTTTCATTTTCTGACTTGTGATTTAATCCTGG-
1 TCATTTTCATTTTTTGACTCATGGTTTAAT-CTGGA
* * * ** *
5189049 TCATTTTCATTTTCTAATTTGTGGTTTAATCTGGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
* * *
5189084 TTATTTTCATTTTTTGACTAATGGTTTAATCTCTG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATCT-GGA
* * ** *
5189119 TCGTTTTCATTATCCGACTCACGGTTTAATCATGG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TGGA
* ** *
5189154 TCATTTTTATTTTTTTGACTTGTGGTTTAATCTCGA
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCTGGA
* * * * **
5189190 TCGTTCTTTATTTTTTGAAC-CGTGTTTTAATCACGA
1 TCATT-TTCATTTTTTG-ACTCATGGTTTAATCTGGA
* *
5189226 TCGTTTTCATTTATTGACTC
1 TCATTTTCATTTTTTGACTC
5189246 GTGATTTGAA
Statistics
Matches: 396, Mismatches: 85, Indels: 54
0.74 0.16 0.10
Matches are distributed among these distances:
30 15 0.04
32 7 0.02
33 7 0.02
34 12 0.03
35 273 0.69
36 73 0.18
37 9 0.02
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTGGA
Found at i:5189090 original size:205 final size:206
Alignment explanation
Indices: 5188811--5189187 Score: 496
Period size: 205 Copynumber: 1.8 Consensus size: 206
5188801 AATCTTGGTT
* * * *
5188811 GTTTTCATTTTTTGACTTTTGGTTTAATCTGGCTCATTTTCATTTTTCGACTCATCGCTTAATTG
1 GTTTTCATTTTCTGACTTGTGATTTAATCTGGCTCATTTTCATTTTTCAACTCATCGCTTAATTG
* * ** **
5188876 GGATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCATTTTCATTTTTTGAC-CTGTGGT
66 GGATTATTTTCATTTTTTGACTAATGGTTTAATC-TCAGTCATTTTCATTATCCGACTC-ACGGT
5188939 CTAATCATGGTCATTTTCA-TTTTTTGACTTGTGGTTTAATCTCTATTATTTTTTTTATAGGTAG
129 CTAATCATGGTCATTTTCATTTTTTTGACTTGTGGTTTAATCTCTATTATTTTTTTTATAGGTAG
5189003 TTTAATCCCAATC
194 TTTAATCCCAATC
* ** * *
5189016 GTTTTCATTTTCTGACTTGTGATTTAATCCTGG-TCATTTTCA-TTTTCTAATTTGTGGTTTAAT
1 GTTTTCATTTTCTGACTTGTGATTTAAT-CTGGCTCATTTTCATTTTTC-AACTCATCGCTTAAT
* *
5189079 CTGGG-TTATTTTCATTTTTTGACTAATGGTTTAATCTCTGTCGTTTTCATTATCCGACTCACGG
64 -TGGGATTATTTTCATTTTTTGACTAATGGTTTAATCTCAGTCATTTTCATTATCCGACTCACGG
* *
5189143 TTTAATCATGGTCATTTTTATTTTTTTGACTTGTGGTTTAATCTC
128 TCTAATCATGGTCATTTTCATTTTTTTGACTTGTGGTTTAATCTC
5189188 GATCGTTCTT
Statistics
Matches: 147, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
204 6 0.04
205 108 0.73
206 33 0.22
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (206 bp):
GTTTTCATTTTCTGACTTGTGATTTAATCTGGCTCATTTTCATTTTTCAACTCATCGCTTAATTG
GGATTATTTTCATTTTTTGACTAATGGTTTAATCTCAGTCATTTTCATTATCCGACTCACGGTCT
AATCATGGTCATTTTCATTTTTTTGACTTGTGGTTTAATCTCTATTATTTTTTTTATAGGTAGTT
TAATCCCAATC
Found at i:5189468 original size:35 final size:35
Alignment explanation
Indices: 5189424--5189526 Score: 102
Period size: 35 Copynumber: 2.9 Consensus size: 35
5189414 GTTTAAACAC
5189424 GGTCATTTCCATTTTCTGACTAATGGTTTAATCTTA
1 GGTCATTTCCATTTTCTGACTAATGGTTTAATC-TA
* * * ** *
5189460 -GTCGTTTCCACTTTCTGGCTCGTGCTTTAATCTA
1 GGTCATTTCCATTTTCTGACTAATGGTTTAATCTA
* *
5189494 GGTCATTTTCTTTTTCTGACTCAAT-GTTTAATC
1 GGTCATTTCCATTTTCTGACT-AATGGTTTAATC
5189527 GCACTTGTTT
Statistics
Matches: 51, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
34 2 0.04
35 48 0.94
36 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.15, T:0.48
Consensus pattern (35 bp):
GGTCATTTCCATTTTCTGACTAATGGTTTAATCTA
Found at i:5189739 original size:35 final size:35
Alignment explanation
Indices: 5189696--5189828 Score: 117
Period size: 35 Copynumber: 3.8 Consensus size: 35
5189686 TTTTCGATCG
*
5189696 TTTTCATTTTCTAACTCGTGATTTAATCCCATTCG
1 TTTTCATTTTCTAACTCGTGATTTAATCCCATTCA
* * * *
5189731 TTTTCATTTTCTGACTCAATG-TTTAATCTCAGTCA
1 TTTTCATTTTCTAACTC-GTGATTTAATCCCATTCA
* * * *
5189766 TTTTCCTTTTTCTAGCTAGTGGTTTAATCCCGATT-A
1 TTTT-CATTTTCTAACTCGTGATTTAATCCC-ATTCA
* * *
5189802 TTTTTATTTTTTAACTCGAGATTTAAT
1 TTTTCATTTTCTAACTCGTGATTTAAT
5189829 TTCGGTCATT
Statistics
Matches: 75, Mismatches: 19, Indels: 8
0.74 0.19 0.08
Matches are distributed among these distances:
35 49 0.65
36 24 0.32
37 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.10, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTCTAACTCGTGATTTAATCCCATTCA
Found at i:5189806 original size:126 final size:125
Alignment explanation
Indices: 5189570--5189806 Score: 284
Period size: 126 Copynumber: 1.9 Consensus size: 125
5189560 TCCATGTTGT
*
5189570 TTTTCATTTTTTAACTCGTACTTTAATCCCAATCATTTTCATTTCTTGACTCATGATTCAAACTA
1 TTTTCATTTTCTAACTCGTACTTTAATCCCAATCATTTTCATTTCTTGACTCATGATTCAAACTA
* * * *
5189635 GTCGTATTCATTTTCTAACTCGTGGTTTAGTCCCGATCATTTTTTTTTCATTTTTCGATCG
66 GTCATATTCATTTTCTAACTAGTGGTTTAATCCCGAT-ATATTTTTTTCATTTTTCGATCG
* * * *
5189696 TTTTCATTTTCTAACTCGTGA-TTTAATCCCATTCGTTTTCATTT-TCTGACTCAATG-TTTAAT
1 TTTTCATTTTCTAACTCGT-ACTTTAATCCCAATCATTTTCATTTCT-TGACTC-ATGATTCAAA
* * *
5189758 CTCAGTCATTTTCCTTTTTCTAGCTAGTGGTTTAATCCCGAT-TATTTTT
63 CT-AGTCATATT-CATTTTCTAACTAGTGGTTTAATCCCGATATATTTTT
5189807 ATTTTTTAAC
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
125 1 0.01
126 57 0.61
127 11 0.12
128 25 0.27
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (125 bp):
TTTTCATTTTCTAACTCGTACTTTAATCCCAATCATTTTCATTTCTTGACTCATGATTCAAACTA
GTCATATTCATTTTCTAACTAGTGGTTTAATCCCGATATATTTTTTTCATTTTTCGATCG
Found at i:5189947 original size:35 final size:34
Alignment explanation
Indices: 5189908--5190030 Score: 95
Period size: 36 Copynumber: 3.5 Consensus size: 34
5189898 TTCTCAATAG
* *
5189908 TTTTCATTTTTTGACATGTGATTTAATATTGATAA
1 TTTTCATTTTCTGAC-TGTGATTTAATATCGATAA
* * **
5189943 TTTTCATTTCTCTGACTCATGATTTAATGA-CGGTTGT
1 TTTTCATTT-TCTGACT-GTGATTTAAT-ATC-GATAA
* **
5189980 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCG
1 TTTTCATTTTCTGAC-TGTGATTTAATATCGATAA
*
5190015 TTTTCATTTTTTGACT
1 TTTTCATTTTCTGACT
5190031 CACGGTTTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 13
0.74 0.13 0.14
Matches are distributed among these distances:
34 1 0.01
35 26 0.37
36 30 0.43
37 13 0.19
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.54
Consensus pattern (34 bp):
TTTTCATTTTCTGACTGTGATTTAATATCGATAA
Found at i:5190002 original size:72 final size:71
Alignment explanation
Indices: 5189908--5190041 Score: 178
Period size: 72 Copynumber: 1.9 Consensus size: 71
5189898 TTCTCAATAG
* * *
5189908 TTTTCATTTTTTGACATGTGATTTAATATTGATAATTTTCATTTCTCTGACTCATGATTTAATGA
1 TTTTCATTTTCTGACATGTGATTTAATATCGATAATTTTCATTT-TCTGACTCACGATTTAATGA
5189973 CGGTTGT
65 CGGTTGT
* * ** * *
5189980 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAAT
1 TTTTCATTTTCTGACATGTGATTTAATATCGATAATTTTCATTTTCTGACTCACGATTTAAT
5190042 CCTGATCATT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
71 15 0.28
72 38 0.72
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.52
Consensus pattern (71 bp):
TTTTCATTTTCTGACATGTGATTTAATATCGATAATTTTCATTTTCTGACTCACGATTTAATGAC
GGTTGT
Found at i:5190040 original size:35 final size:35
Alignment explanation
Indices: 5189872--5190135 Score: 158
Period size: 35 Copynumber: 7.5 Consensus size: 35
5189862 AGTTTCGGTG
* * * * *
5189872 GTTTTGATTTTCTGACTCATGAG-TTATTCTCAATA
1 GTTTTCATTTTTTGACTCATG-GTTTAATCTCGATC
* * *
5189907 GTTTTCATTTTTTGA--CATGTGATTTAATATTGATA
1 GTTTTCATTTTTTGACTCATG-G-TTTAATCTCGATC
* * * ** * *
5189942 ATTTTCATTTCTCTGACTCATGATTTAATGACGGTT
1 GTTTTCATTT-TTTGACTCATGGTTTAATCTCGATC
* ** *
5189978 GTTTTTCATTTTCTGACTTGTGATTTAATCTCGATC
1 G-TTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5190014 GTTTTCATTTTTTGACTCACGGTTTAATC-CTGATC
1 GTTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * * *
5190049 ATTTTTATTTTTTGACTCGTGGTTTAATCTCGGTT
1 GTTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** * * * *
5190084 GTTTTTGTTTTCTGACTCATGATTTAATTTCGGTC
1 GTTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5190119 TTTTTCATTTTTTGACT
1 GTTTTCATTTTTTGACT
5190136 TATGATTTTA
Statistics
Matches: 177, Mismatches: 44, Indels: 16
0.75 0.19 0.07
Matches are distributed among these distances:
33 5 0.03
34 1 0.01
35 125 0.71
36 33 0.19
37 9 0.05
38 4 0.02
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (35 bp):
GTTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5190040 original size:107 final size:107
Alignment explanation
Indices: 5189867--5190135 Score: 294
Period size: 107 Copynumber: 2.5 Consensus size: 107
5189857 GATTTAGTTT
* * * * * * *
5189867 CGGTGGTTTTGATTTTCTGACTCATGAGTTATTCTCAATAGTTTTCATTTTTTGA--CATGTGAT
1 CGGTTGTTTTTATTTTCTGACTCATGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGTGAT
* *
5189930 TTAATATTGATAATTTTCATTTCTCTGACTCATGATTTAATGA
66 TTAATACTGATAATTTTCATTT-TCTGACTCATGATTTAATCA
**
5189973 CGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACG-G-
1 CGGTTGTTTTT-ATTTTCTGACTCATGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGTGA
* * * * * * *
5190036 TTTAATCCTGATCATTTTTATTTTTTGACTCGTGGTTTAATCT
65 TTTAATACTGATAATTTTCATTTTCTGACTCATGATTTAATCA
* * * *
5190079 CGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTCGGTCTTTTTCATTTTTTGACT
1 CGGTTGTTTTTATTTTCTGACTCATGATTTAATCTCGATCGTTTTCATTTTTTGACT
5190136 TATGATTTTA
Statistics
Matches: 136, Mismatches: 24, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
105 40 0.29
106 35 0.26
107 57 0.42
108 1 0.01
109 3 0.02
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.52
Consensus pattern (107 bp):
CGGTTGTTTTTATTTTCTGACTCATGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGTGAT
TTAATACTGATAATTTTCATTTTCTGACTCATGATTTAATCA
Found at i:5190088 original size:70 final size:71
Alignment explanation
Indices: 5189696--5190242 Score: 216
Period size: 71 Copynumber: 7.7 Consensus size: 71
5189686 TTTTCGATCG
* * *
5189696 TTTTCATTTTCTAACTCGTGATTTAATC-CCATTCGTTTTCATTTTCTGACTCAATG-TTTAAT-
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGA-TCGTTTTCATTTTCTGACTC-ACGATTTAATC
*
5189758 CTCAGTCAT
64 CTGA-TCAT
* * * * * ** * * *
5189767 TTTCCTTTTTCT-AGCTAGTGGTTTAATCCCGATTATTTTTATTTTTTAACTCGA-GATTTAAT-
1 TTTTCATTTTCTGA-CTCGTGATTTAATCTCGATCGTTTTCATTTTCTGACTC-ACGATTTAATC
* *
5189829 TTCGGTCAT
64 CT-GATCAT
* * * * * * * * * *
5189838 TTTTC-TTTCCCTAACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGAGTT-ATT
1 TTTTCATTT-TCTGAC-TCGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCACGATTTAATC
* *
5189900 CTCAAT-AG
64 CT-GATCAT
* * * ** *
5189908 TTTTCATTTTTTGACAT-GTGATTTAATATTGATAATTTTCATTTCTCTGACTCATGATTTAATG
1 TTTTCATTTTCTGAC-TCGTGATTTAATCTCGATCGTTTTCATTT-TCTGACTCACGATTTAAT-
* * **
5189972 AC-GGTTGT
63 CCTGATCAT
* * *
5189980 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCT
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCACGATTTAATCCT
5190045 GATCAT
66 GATCAT
* * * * ** * *
5190051 TTTT-ATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAAT-TT
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCACGATTTAATCCT
*
5190114 CGGTC-T
66 -GATCAT
* ** * * ** *
5190120 TTTTCATTTTTTGACTTATGATTTTA-CTCCTATCGCTTTT-ATTCCCTGACGT-AAGATTTAAT
1 TTTTCATTTTCTGACTCGTGATTTAATCT-CGATCG-TTTTCATTTTCTGAC-TCACGATTTAAT
*
5190182 CCTGGTCA-
63 CCTGATCAT
* * * * *
5190190 TTTTCATTTTTTTTATTCGTGATTTAATCCTTG-TTGTTTTCATTTTCTGACTC
1 TTTTCA-TTTTCTGACTCGTGATTTAAT-CTCGATCGTTTTCATTTTCTGACTC
5190243 GTAATTTAAT
Statistics
Matches: 355, Mismatches: 93, Indels: 56
0.70 0.18 0.11
Matches are distributed among these distances:
69 8 0.02
70 141 0.40
71 160 0.45
72 43 0.12
73 3 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (71 bp):
TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCACGATTTAATCCT
GATCAT
Found at i:5190236 original size:141 final size:139
Alignment explanation
Indices: 5189908--5190268 Score: 345
Period size: 141 Copynumber: 2.6 Consensus size: 139
5189898 TTCTCAATAG
* * * ** *
5189908 TTTTCATTTTTTGACAT-GTGATTTAATATTGATAATTTTCATTTCTCTGACTCATGATTTAATG
1 TTTTCATTTTTTGAC-TCGTGATTTAATCTCGGTTGTTTTCATTT-TCTGACTCATGATTTAATT
* * *** * *
5189972 ACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGT
64 TCGG-T-TTTTTCATTTTCTGACTTATGATTTAATCTCGATCGTTTTCATTCCCTGACTCAAGAT
5190037 TTAATCCTGATCA
127 TTAATCCTGATCA
* * **
5190050 TTTTTATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTC
1 TTTTCATTTTTTGACTCGTGATTTAATCTCGGTTGTTTTCATTTTCTGACTCATGATTTAATTTC
* * *
5190115 GGTCTTTTTCATTTTTTGACTTATGATTTTA-CTCCTATCGCTTTT-ATTCCCTGACGT-AAGAT
66 GGT-TTTTTCATTTTCTGACTTATGATTTAATCT-CGATCG-TTTTCATTCCCTGAC-TCAAGAT
*
5190177 TTAATCCTGGTCA
127 TTAATCCTGATCA
* * * * *
5190190 TTTTCATTTTTTTTATTCGTGATTTAATC-CTTGTTGTTTTCATTTTCTGACTCGTAATTTAATT
1 TTTTCA-TTTTTTGACTCGTGATTTAATCTC-GGTTGTTTTCATTTTCTGACTCATGATTTAATT
*
5190254 TTGGTTGTTTTCATT
64 TCGGTT-TTTTCATT
5190269 ATCTTAGACA
Statistics
Matches: 180, Mismatches: 32, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
139 2 0.01
140 59 0.33
141 86 0.48
142 33 0.18
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.54
Consensus pattern (139 bp):
TTTTCATTTTTTGACTCGTGATTTAATCTCGGTTGTTTTCATTTTCTGACTCATGATTTAATTTC
GGTTTTTTCATTTTCTGACTTATGATTTAATCTCGATCGTTTTCATTCCCTGACTCAAGATTTAA
TCCTGATCA
Found at i:5190342 original size:22 final size:21
Alignment explanation
Indices: 5190295--5190342 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
5190285 AATCCCTCTC
*
5190295 ATTTTTATTTTCTGACTTATG
1 ATTTTTATTTTCTGACTCATG
*
5190316 ATTTTTATTTTCTGACTCGTG
1 ATTTTTATTTTCTGACTCATG
5190337 ATTTTT
1 ATTTTT
5190343 TCTCAGTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.62
Consensus pattern (21 bp):
ATTTTTATTTTCTGACTCATG
Found at i:5190388 original size:35 final size:35
Alignment explanation
Indices: 5190349--5191870 Score: 387
Period size: 35 Copynumber: 43.3 Consensus size: 35
5190339 TTTTTCTCAG
* *
5190349 TCATTTTCATTTTCTGACTCATAGTTTAATCTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
*
5190384 TCATTTT--TTTTTT-ACCCATGGTTTAATC-CTGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
* * ** *
5190416 TCGTTTTTCTTTTTTTGACTGGTGGTTTAATCATAG-
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATC-TCGA
* ** * * *
5190452 TTATTTTCATTTTTTGACTTGTGGTTTAATTTGGC
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
*
5190487 TCATTTTCATTTTTTGACTCATGGCTTAATCAT-GA
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TCGA
* * *
5190522 TTATTTTCATTTTTTCACTCATGGTTTAATCATAG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TCGA
* * * *
5190557 TCATTTTCATTTTTTGACCCATGGTCTAATCACGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * *
5190592 TCGCTTTTCATTTTTTGACTCATGGTTTAATCCCTA
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * ** * *
5190628 CCA-TTT--TTTTATGGGT-A--GTTTAATCCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * ** *
5190657 TCGTTTTCATTTTCTGACTTGTGGTTTAATC-CTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
* ** * * *
5190692 TCATTTTCATTTTCTGACTTGTGGTTTAATTTGGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * *
5190727 TTATTTTCATCTTTTGACTAATGGTTTAATCCCTG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
* * ** * * * * *
5190762 TCGTTTTCATTATCCGACTTACGATTTAATCGCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
**
5190797 TCATTTTCATTTTTTTGACTTGTGGTTTAATCTC-A
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCTCGA
* * * * *
5190832 GTCGTTCTTCATTTTTTGAATCGTGTTTTAATCACGA
1 -TCATT-TTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * *
5190869 TCCTTTTCATTTCTTGACTCGTGATTTGAA-CCCGA
1 TCATTTTCATTTTTTGACTCATGGTTT-AATCTCGA
* * *
5190904 TTGCA--TTCATTTTCTAACTCATGGTTTAATC-CTAA
1 -T-CATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
*
5190939 TCATTTT--TCTTTT---TCAT--TTT--T-T-GA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * * * * *
5190963 TCGTTTTTATTTTCTAACTCGTAGCTTAAT-TCCA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * *
5190997 CTCATTTTCATTTTTTGATTCATTGTTTAATC-CTA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * *
5191032 TTCATTTTTC-TTTTTCTGA-TCGATGGTTTAAACGCGG
1 -TCA-TTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA
* * * *
5191069 TCATTTGCATTTTTTGACACGTGGTTTAATCT-TA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * *
5191103 GTCATTTCCATTTTCT-AGCTCATGCTTTAATCTAGG
1 -TCATTTTCATTTTTTGA-CTCATGGTTTAATCTCGA
*
5191139 TCATTTTC-TTTTTCTGACTCAAT-GTTTAATC-CCA
1 TCATTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA
** * * * *
5191173 CTTGTTTTCATTTTCTGACTCGTGATTTAATC-CAGGT
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTC--GA
** * * **
5191210 TGTTTTTCATTTTTTAACTCGTACTTTAATCTC-A
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * *
5191244 GCATTTTCATTTCTTGACTCATGATTCCAA-CT-GG
1 TCATTTTCATTTTTTGACTCATGGTT-TAATCTCGA
*** * * * * *
5191278 TCGCATTCATTTTCTAACTCGTGGTTTAGTCCCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * *
5191313 TCATTTTTTTTTCATTTTTTGA-TCAT-TTTTATTTTTTGA
1 TCA-----TTTTCATTTTTTGACTCATGGTTTA-ATCTCGA
* * ***
5191352 CTCGTGGTTTAATCCCACTTGTTTTCATTTTCTGACTCGTGGTTTAATCAAAA
1 -TC---ATTT--T--CA------TT---TTT-TGACTCATGGTTTAATCTCGA
* * *
5191405 TCGTTTTCACTTTCTGACTCAAT-GTTTAATCTCGA
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATCTCGA
* * *
5191440 TCTTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTCGG
1 TCATTTTCATTTTT-TGA-CTCA-TGGTTTAATCTCGA
* **
5191476 TCATTTTCATTTTTTGACTCGTGGTTTAATCTTTA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * *
5191511 TCGTTTTCATTTTTTGACT-AGTGATTTAATCTTGG
1 TCATTTTCATTTTTTGACTCA-TGGTTTAATCTCGA
* * *
5191546 TCATTTT--TTTTCTGACTCGTGATTTAATCTC-A
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * *
5191578 GTCGTTGTCATTTCTTGACTCATGATTTAATCTCGA
1 -TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * * *
5191614 T--TGTTTCAACTTCTT-AGCTCGTGATTTAAACCCGA
1 TCAT-TTTC-ATTTTTTGA-CTCATGGTTTAATCTCGA
* *
5191649 TTGCA--TTCATTTTTTTGACTCGTGATTTAATC-CTGA
1 -T-CATTTTCA-TTTTTTGACTCATGGTTTAATCTC-GA
* *
5191685 TCGTTTTCATTTTTTGACTCATAGTTTAATCTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * **
5191720 TCGTTTTCATTTTGTGACTCGGGGTTTAATCTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * * *
5191755 TC-TTTT-TTTTTTCTAACTCGTAGTTTAATAC-GGG
1 TCATTTTCATTTTT-TGACTCATGGTTTAAT-CTCGA
* * ** * *
5191789 TCATTTTTAGTTTTTGACTCACAGTTTAATCGCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * * *
5191824 TCATTTTCATTTTTTAACTCGTGATTTAATTTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
5191859 TCATTTTTCATT
1 TCA-TTTTCATT
5191871 CCCTGACATG
Statistics
Matches: 1095, Mismatches: 266, Indels: 251
0.68 0.17 0.16
Matches are distributed among these distances:
24 7 0.01
26 5 0.00
28 3 0.00
29 15 0.01
30 7 0.01
31 4 0.00
32 31 0.03
33 48 0.04
34 84 0.08
35 605 0.55
36 221 0.20
37 10 0.01
38 7 0.01
39 7 0.01
40 13 0.01
42 2 0.00
45 2 0.00
47 1 0.00
48 2 0.00
49 4 0.00
51 3 0.00
52 5 0.00
53 5 0.00
54 4 0.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
Found at i:5190813 original size:205 final size:205
Alignment explanation
Indices: 5190455--5190828 Score: 459
Period size: 205 Copynumber: 1.8 Consensus size: 205
5190445 ATCATAGTTA
* * *
5190455 TTTTCATTTTTTGACTTGTGGTTTAATTTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAT
1 TTTTCATTTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAT
* * * ** * *
5190520 GATTATTTTCATTTTTTCACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACCCATGGTCTA
66 GATTATTTTCATCTTTTCACTAATGGTTTAATCATAGTCATTTTCATTATCCGACCCACGATCTA
*
5190585 ATCACGGTCGCTTTTCATTTTTTGACTCATGGTTTAATCCCTACCATTTTTTTATGGGTAGTTTA
131 ATCACGGTCGATTTTCATTTTTTGACTCATGGTTTAATCCCTACCATTTTTTTATGGGTAGTTTA
5190650 ATCCCAATCG
196 ATCCCAATCG
** * *
5190660 TTTTCATTTTCTGACTTGTGGTTTAATCCTGG-TCATTTTCATTTTCTGACTTGTGGTTTAAT-T
1 TTTTCATTTTCTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCA
* * * * **
5190723 TGGGTTATTTTCATCTTTTGACTAATGGTTTAATCCCT-GTCGTTTTCATTATCCGACTTACGAT
65 T-GATTATTTTCATCTTTTCACTAATGGTTTAAT-CATAGTCATTTTCATTATCCGACCCACGAT
* * **
5190787 TTAATCGCGGTC-ATTTTCATTTTTTTGACTTGTGGTTTAATC
128 CTAATCACGGTCGATTTTCA-TTTTTTGACTCATGGTTTAATC
5190829 TCAGTCGTTC
Statistics
Matches: 140, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
204 7 0.05
205 128 0.91
206 5 0.04
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (205 bp):
TTTTCATTTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAT
GATTATTTTCATCTTTTCACTAATGGTTTAATCATAGTCATTTTCATTATCCGACCCACGATCTA
ATCACGGTCGATTTTCATTTTTTGACTCATGGTTTAATCCCTACCATTTTTTTATGGGTAGTTTA
ATCCCAATCG
Found at i:5191483 original size:71 final size:69
Alignment explanation
Indices: 5191335--5191985 Score: 324
Period size: 70 Copynumber: 9.3 Consensus size: 69
5191325 CATTTTTTGA
* * * * * * *
5191335 TCATTTTTATTTTTTGACTCGTGGTTTAATC-CCACTTGTTTTCATTTTCTGACTCGTGGTTTAA
1 TCATTTTCATTTTCTGACTCGT-GTTTAATCTCGA-TCGTTTTCATTTTTTGACTAGTGATTTAA
****
5191399 TCAAAA
64 TCTCGG
* * * * * *
5191405 TCGTTTTCACTTTCTGACTCAATGTTTAATCTCGATCTTTTTCCTTTTTCT-AGCTAGTGGTTTA
1 TCATTTTCATTTTCTGACTC-GTGTTTAATCTCGATCGTTTTCATTTTT-TGA-CTAGTGATTTA
5191469 ATCTCGG
63 ATCTCGG
* **
5191476 TCATTTTCATTTTTTGACTCGTGGTTTAATCTTTATCGTTTTCATTTTTTGACTAGTGATTTAAT
1 TCATTTTCATTTTCTGACTCGT-GTTTAATCTCGATCGTTTTCATTTTTTGACTAGTGATTTAAT
*
5191541 CTTGG
65 CTCGG
* *
5191546 TCATTTT--TTTTCTGACTCGTGATTTAATCTC-AGTCGTTGTCATTTCTTGACTCA-TGATTTA
1 TCATTTTCATTTTCTGACTCGTG-TTTAATCTCGA-TCGTTTTCATTTTTTGACT-AGTGATTTA
*
5191607 ATCTCGA
63 ATCTCGG
** * * * * ** *
5191614 T--TGTTTCAACTTCTTAGCTCGTGATTTAAACCCGATTGCATTCATTTTTTTGACTCGTGATTT
1 TCAT-TTTCATTTTCTGA-CTCGTG-TTTAATCTCGATCGTTTTCA-TTTTTTGACTAGTGATTT
*
5191677 AATC-CTGA
62 AATCTC-GG
* * * * * * *
5191685 TCGTTTTCATTTTTTGACTCATAGTTTAATCTCGATCGTTTTCATTTTGTGACTCGGGGTTTAAT
1 TCATTTTCATTTTCTGACTCGT-GTTTAATCTCGATCGTTTTCATTTTTTGACTAGTGATTTAAT
*
5191750 CTCGA
65 CTCGG
** * * * * * * **
5191755 TC-TTTTTTTTTTCTAACTCGTAGTTTAATAC-GGGTCATTTTTAGTTTTTGACTCACAG-TTTA
1 TCATTTTCATTTTCTGACTCGT-GTTTAAT-CTCGATCGTTTTCATTTTTTGACT-AGTGATTTA
*
5191817 ATCGCGG
63 ATCTCGG
* * * * ***
5191824 TCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCATTTTTCATTCCCTGAC-ATGTGATTTA
1 TCATTTTCATTTTCTGACTCGTG-TTTAATCTCGATC-GTTTTCATTTTTTGACTA-GTGATTTA
* *
5191888 GTTTCGG
63 ATCTCGG
** * * * *
5191895 TGGTTTTGATTTTCTGACTCATGATTTATTCTC-AGTAGTTTTCATTTTTTGAC-ATGTGATTTA
1 TCATTTTCATTTTCTGACTCGTG-TTTAATCTCGA-TCGTTTTCATTTTTTGACTA-GTGATTTA
* **
5191958 ATATCAA
63 ATCTCGG
*
5191965 TCATTTTCTTTTCTCTGACTC
1 TCATTTTCATTT-TCTGACTC
5191986 ATTAATTTTA
Statistics
Matches: 441, Mismatches: 109, Indels: 61
0.72 0.18 0.10
Matches are distributed among these distances:
66 1 0.00
67 5 0.01
68 50 0.11
69 57 0.13
70 165 0.37
71 152 0.34
72 10 0.02
73 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (69 bp):
TCATTTTCATTTTCTGACTCGTGTTTAATCTCGATCGTTTTCATTTTTTGACTAGTGATTTAATC
TCGG
Found at i:5191540 original size:106 final size:105
Alignment explanation
Indices: 5191373--5192099 Score: 415
Period size: 106 Copynumber: 7.0 Consensus size: 105
5191363 ATCCCACTTG
* * *** * * *
5191373 TTTTCATTTTCTGACTCGTGGTTTAATCAAAATCGTTTTCACTTTCTGACTCAATG-TTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTC-GTGATTTAATCT
* *
5191437 CGATCTTTTTCCTTTTTCTAG-CTAGTGGTTTAATCTCGGTCA
65 CGATCTTTTT-CTTTTTCTAGACTCGTGATTTAATC-CGGTCA
* ** * *
5191479 TTTTCATTTTTTGACTCGTGGTTTAATCTTTATCGTTTTCATTTTTTGACTAGTGATTTAATCTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCGTGATTTAATCTC
* * * *
5191544 GGTC-ATTT-TTTTTCT-GACTCGTGATTTAATCTCAGTCG
66 GATCTTTTTCTTTTTCTAGACTCGTGATTTAATC-CGGTCA
* * * * * * *
5191582 TTGTCATTTCTTGACTCATGATTTAATCTCGATTG-TTTCAACTTCTT-AGCTCGTGATTTAAAC
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTC-ATTTTTTGA-CTCGTGATTTAATC
* ** * * *
5191645 CCGAT-TGCATTCATTTTT-TTGACTCGTGATTTAATCCTGATCG
64 TCGATCT-TTTTC-TTTTTCTAGACTCGTGATTTAATCC-GGTCA
* * * *
5191688 TTTTCATTTTTTGACTCATAGTTTAATCTCGATCGTTTTCATTTTGTGACTCGGGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCGTGATTTAATCTC
*
5191753 GATCTTTTT-TTTTTCTA-ACTCGT-AGTTTAATACGGGTCA
66 GATCTTTTTCTTTTTCTAGACTCGTGA-TTTAAT-CCGGTCA
* * ** * * * * *
5191792 TTTTTAGTTTTTGACTCACAGTTTAATCGCGGTCATTTTCATTTTTTAACTCGTGATTTAATTTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCGTGATTTAATCTC
* ** * * **
5191857 GATCATTTTTCATTCCCT-GACAT-GTGATTTAGTTTCGGTGG
66 GATC-TTTTTCTTTTTCTAGAC-TCGTGATTTA-ATCCGGTCA
* * * * * *
5191898 TTTTGATTTTCTGACTCATGATTTATTCTC-AGTAGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TCGTTTTCATTTTTTGAC-TCGTGATTTAATC
* * *** *
5191961 TCAATCATTTTCTTTTCTCT-GACTC---A-TTAATTTTAGTCT
64 TCGATCTTTTTCTTTT-TCTAGACTCGTGATTTAA-TCCGGTCA
* * * ** *
5192000 TTTTCATTTTTTGACTTATGGTTTAAT-TCCCATTGCTTTT-ATTTCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-CGATCG-TTTTCATTTTTTGACTCGTGATTTAATC
* * *
5192063 -CGAGTCATTTTTGTTTTTCTA-ATTCGTGTTTTAATCC
64 TCGA-TC-TTTTTCTTTTTCTAGACTCGTGATTTAATCC
5192100 TTGTTTGTTT
Statistics
Matches: 473, Mismatches: 110, Indels: 77
0.72 0.17 0.12
Matches are distributed among these distances:
101 4 0.01
102 63 0.13
103 86 0.18
104 80 0.17
105 23 0.05
106 207 0.44
107 10 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (105 bp):
TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCGTGATTTAATCTC
GATCTTTTTCTTTTTCTAGACTCGTGATTTAATCCGGTCA
Found at i:5191589 original size:68 final size:69
Alignment explanation
Indices: 5191458--5191612 Score: 199
Period size: 68 Copynumber: 2.2 Consensus size: 69
5191448 CTTTTTCTAG
* * * * *
5191458 CTAGTGGTTTAATCTCGGTCATTTTCATTTTTTGACTCGTGGTTTAATCTTTATCGTTTTCATTT
1 CTAGTGATTTAATCTCGGTCATTTT-ATTTTCTGACTCGTGATTTAATCTTCATCGTTGTCATTT
*
5191523 TTTGA
65 CTTGA
*
5191528 CTAGTGATTTAATCTTGGTCATTTT-TTTTCTGACTCGTGATTTAATC-TCAGTCGTTGTCATTT
1 CTAGTGATTTAATCTCGGTCATTTTATTTTCTGACTCGTGATTTAATCTTCA-TCGTTGTCATTT
5191591 CTTGA
65 CTTGA
5191596 CTCA-TGATTTAATCTCG
1 CT-AGTGATTTAATCTCG
5191613 ATTGTTTCAA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
67 2 0.03
68 49 0.65
69 1 0.01
70 23 0.31
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.51
Consensus pattern (69 bp):
CTAGTGATTTAATCTCGGTCATTTTATTTTCTGACTCGTGATTTAATCTTCATCGTTGTCATTTC
TTGA
Found at i:5191599 original size:174 final size:173
Alignment explanation
Indices: 5191379--5191703 Score: 401
Period size: 174 Copynumber: 1.9 Consensus size: 173
5191369 CTTGTTTTCA
* *
5191379 TTTTCTGACTCGTGGTTTAATCAAAATCGTTTTCACTTTCTGACTCAATG-TTTAATCTCGATCT
1 TTTTCTGACTCGTGATTTAATCAAAATCGTTGTCACTTTCTGACTC-ATGATTTAATCTCGAT-T
* * * * * *
5191443 TTTTC-CTTTTTCTAGCTAGTGGTTTAATCTCG-GT-CATTTTCA-TTTTTTGACTCGTGGTTTA
64 GTTTCAC-TTCT-TAGCTAGTGATTTAAACCCGAGTGCA--TTCATTTTTTTGACTCGTGATTTA
* *
5191504 ATCTTTATCGTTTTCATTTTTTGACTAGTGATTTAATCTTGGTCATTTT
125 ATCCTGATCGTTTTCATTTTTTGACTAGTGATTTAATCTTGGTCATTTT
** *
5191553 TTTTCTGACTCGTGATTTAATCTCAGTCGTTGTCA-TTTCTTGACTCATGATTTAATCTCGATTG
1 TTTTCTGACTCGTGATTTAATCAAAATCGTTGTCACTTTC-TGACTCATGATTTAATCTCGATTG
* *
5191617 TTTCAACTTCTTAGCTCGTGATTTAAACCCGATTGCATTCATTTTTTTGACTCGTGATTTAATCC
65 TTTC-ACTTCTTAGCTAGTGATTTAAACCCGAGTGCATTCATTTTTTTGACTCGTGATTTAATCC
5191682 TGATCGTTTTCATTTTTTGACT
129 TGATCGTTTTCATTTTTTGACT
5191704 CATAGTTTAA
Statistics
Matches: 129, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
173 32 0.25
174 94 0.73
175 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (173 bp):
TTTTCTGACTCGTGATTTAATCAAAATCGTTGTCACTTTCTGACTCATGATTTAATCTCGATTGT
TTCACTTCTTAGCTAGTGATTTAAACCCGAGTGCATTCATTTTTTTGACTCGTGATTTAATCCTG
ATCGTTTTCATTTTTTGACTAGTGATTTAATCTTGGTCATTTT
Found at i:5191955 original size:35 final size:35
Alignment explanation
Indices: 5191863--5191957 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
5191853 TTTCGATCAT
** * *
5191863 TTTTCATTCCCTGACATGTGATTTAGTTTCGGTGG
1 TTTTCATTTTCTGACATGTGATTTAGTTTCAGTAG
* *
5191898 TTTTGATTTTCTGAC-TCATGATTTA-TTCTCAGTAG
1 TTTTCATTTTCTGACAT-GTGATTTAGTT-TCAGTAG
*
5191933 TTTTCATTTTTTGACATGTGATTTA
1 TTTTCATTTTCTGACATGTGATTTA
5191958 ATATCAATCA
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
34 3 0.06
35 44 0.92
36 1 0.02
ACGTcount: A:0.18, C:0.14, G:0.17, T:0.52
Consensus pattern (35 bp):
TTTTCATTTTCTGACATGTGATTTAGTTTCAGTAG
Found at i:5192117 original size:36 final size:35
Alignment explanation
Indices: 5192077--5192155 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
5192067 TCATTTTTGT
* * *
5192077 TTTTCTAATTCGTGTTTTAATCCTTGTTTGTTTTCA
1 TTTTCTAACTCGTGATTTAAT-CTTGCTTGTTTTCA
* *
5192113 TTTTCTGACTCGTGATTTAATTTTGCTTGTTTTCA
1 TTTTCTAACTCGTGATTTAATCTTGCTTGTTTTCA
*
5192148 TTATCTAA
1 TTTTCTAA
5192156 GACACGATCT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 18 0.50
36 18 0.50
ACGTcount: A:0.16, C:0.14, G:0.11, T:0.58
Consensus pattern (35 bp):
TTTTCTAACTCGTGATTTAATCTTGCTTGTTTTCA
Found at i:5192202 original size:21 final size:21
Alignment explanation
Indices: 5192176--5192222 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
5192166 AATCCCTCTC
* *
5192176 ATTTTCATTTTTTGACTTATG
1 ATTTTCATTTTCTGACTCATG
*
5192197 ATTTTCATTTTCTGACTCGTG
1 ATTTTCATTTTCTGACTCATG
5192218 ATTTT
1 ATTTT
5192223 TTCGCAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.11, T:0.60
Consensus pattern (21 bp):
ATTTTCATTTTCTGACTCATG
Found at i:5192308 original size:36 final size:36
Alignment explanation
Indices: 5192198--5192820 Score: 273
Period size: 35 Copynumber: 17.8 Consensus size: 36
5192188 TGACTTATGA
* * ** * *
5192198 TTTTCATTTTCTGACTCGTGATTTTTTCGCAG-TCAT
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCGT
* * *
5192234 TTTT-ATTTTTTGACTCATAGTTTAAT-CTCGATC-A
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCGT
* *
5192268 TTTTCATTTTTTGACCCATGGTTTAATCCTGATCGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* * * *
5192304 TTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* ** **
5192340 TTTT-ATTTTTTGACTTGTGGTTTAAT-CTGGCCCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* * *** *
5192374 TTTTCATTTTTCGACT-GATGGCTTAATTGGGAAT--A
1 TTTTCATTTTTTGACTCG-TGGTTTAATCCTG-ATCGT
* * * * *
5192409 ATTTCATTTTTTAACTCATGGTTTAATCAT-AGTC-A
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCGT
* * ** *
5192444 TTTTCATTTTTTGACCCGTGGTCTAATAATGGTCGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* *
5192480 TTTTCATTTTTTGACTCGTGGTTTAATTCTTATC-T
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* * * *
5192515 TTTT--TTTTAT-A--GGTAGTTTAATCCCGATCG-
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* * * **
5192545 TTTTCATTTTCTGACTTGTGGTTTAATTCTGGCCG-
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
* * * * *
5192580 TTTTCATTTTCTGACTTGTAGTTTAAT-CTGGGTTG-
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCGT
**
5192615 TTTTCA-TTTTTGACTAATGGTTTAATCCCTG-TCG-
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCGT
* * *
5192649 TTTTCATTTTTTGACTCGCGATTTAATCGC-GATCAT
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCGT
* *
5192685 TTTT-ATTTTTTTGACTTGTGGTTTAAT-CTCGGTCGT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GATCGT
* * * *
5192721 TCTTCATTTTTTGACTCATGTTTTAATCAC-GATC-A
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCGT
* * * *
5192756 TTTTCATTTCTTAACTCGTGATTTGAA-CCCGATCG-
1 TTTTCATTTTTTGACTCGTGGTTT-AATCCTGATCGT
** * * *
5192791 CATTCATTTTCTAACTCATGGTTTAATCCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT
5192821 AATAACTTTT
Statistics
Matches: 450, Mismatches: 100, Indels: 75
0.72 0.16 0.12
Matches are distributed among these distances:
30 17 0.04
32 6 0.01
33 8 0.02
34 47 0.10
35 247 0.55
36 123 0.27
37 1 0.00
38 1 0.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (36 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCGT
Found at i:5192674 original size:69 final size:69
Alignment explanation
Indices: 5192233--5192764 Score: 224
Period size: 71 Copynumber: 7.6 Consensus size: 69
5192223 TTCGCAGTCA
* ** * * ***
5192233 TTTTTATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCCATGGTTTAATC-C
1 TTTTCATTTTTTGACTCGGAGTTTAATCGCGATCGTTTTCA-TTTTTGACTTGTGGTTTAATCTC
5192297 TGATCG
65 TG-TCG
* * * * *
5192303 TTTTTCTTTTTTTGACT-GGTGGTTTAATC-CTGGTTGTTTTTATTTTTTGACTTGTGGTTTAAT
1 -TTTTCATTTTTTGACTCGG-AGTTTAATCGC-GATCGTTTTCA-TTTTTGACTTGTGGTTTAAT
* * *
5192366 CT-GGCCCA
62 CTCTG-TCG
* * * * ** * **
5192374 TTTTCATTTTTCGACT--GATGGCTTAATTGGGAAT-AATTTCATTTTTTAACTCATGGTTTAAT
1 TTTTCATTTTTTGACTCGGA--GTTTAATCGCG-ATCGTTTTCA-TTTTTGACTTGTGGTTTAAT
* *
5192436 CAT-AGTCA
62 C-TCTGTCG
* * *** * *
5192444 TTTTCATTTTTTGACCCGTG-GTCTAATAATGGTCGTTTTTCATTTTTTGACTCGTGGTTTAAT-
1 TTTTCATTTTTTGACTCG-GAGTTTAATCGCGATCG-TTTTCA-TTTTTGACTTGTGGTTTAATC
*
5192507 TCT-T-A
63 TCTGTCG
* *
5192512 TCTTT--TTTTTT-A-TAGGTAGTTTAATCCCGATCGTTTTCATTTTCTGACTTGTGGTTTAAT-
1 T-TTTCATTTTTTGACTCGG-AGTTTAATCGCGATCGTTTTCATTTT-TGACTTGTGGTTTAATC
*
5192572 TCTGGCCG
63 TCT-GTCG
* * * * * ** *
5192580 TTTTCATTTTCTGACTTGTAGTTTAATCTG-GGTTGTTTTCATTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGGAGTTTAATC-GCGATCGTTTTCATTTTTGACTTGTGGTTTAATCTC
5192644 TGTCG
65 TGTCG
* *
5192649 TTTTCATTTTTTGACTCGCGA-TTTAATCGCGATCATTTTTATTTTTTTGACTTGTGGTTTAATC
1 TTTTCATTTTTTGACTCG-GAGTTTAATCGCGATCGTTTTCA--TTTTTGACTTGTGGTTTAATC
*
5192713 TCGGTCG
63 TCTGTCG
* *
5192720 TTCTTCATTTTTTGACTC--ATGTTTTAATCACGATCATTTTCATTT
1 TT-TTCATTTTTTGACTCGGA-G-TTTAATCGCGATCGTTTTCATTT
5192765 CTTAACTCGT
Statistics
Matches: 349, Mismatches: 77, Indels: 71
0.70 0.15 0.14
Matches are distributed among these distances:
64 5 0.01
65 25 0.07
66 11 0.03
67 9 0.03
68 4 0.01
69 60 0.17
70 96 0.28
71 105 0.30
72 33 0.09
73 1 0.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.52
Consensus pattern (69 bp):
TTTTCATTTTTTGACTCGGAGTTTAATCGCGATCGTTTTCATTTTTGACTTGTGGTTTAATCTCT
GTCG
Found at i:5192697 original size:241 final size:240
Alignment explanation
Indices: 5192288--5192747 Score: 518
Period size: 241 Copynumber: 1.9 Consensus size: 240
5192278 TTGACCCATG
* * * ** * *
5192288 GTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTTATTTTTTGA
1 GTTTAATCCCGATCGTTTTTCATTTTCTGACTGGTGGTTTAATCCTGGCCGTTTTCATTTTCTGA
* * *
5192353 CTTGTGGTTTAATCTGGCCCATTTTCATTTTTCGACTGATGGCTTAATTGGGAATAATTTCATTT
66 CTTGTAGTTTAATCTGGCCCATTTTCATTTTTCGACTAATGGCTTAATTGCG-AT-ATTTCATTT
* * * *
5192418 TTTAACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACCCGTGGTCTAATAAT-GGTCGTTT
129 TTTAACTCACGATTTAATCAGAGTCATTTTCATTTTTTGACCCGTGGTCTAAT-ATCGGTCGTTC
*
5192482 TTCATTTTTTGACTCGTGGTTTAATTCTTATCTTTTTTTTTATAGGTA
193 TTCATTTTTTGACTCATGGTTTAATTCTTATCTTTTTTTTTATAGGTA
* *
5192530 GTTTAATCCCGATCG-TTTTCATTTTCTGACTTGTGGTTTAATTCTGGCCGTTTTCATTTTCTGA
1 GTTTAATCCCGATCGTTTTTCATTTTCTGACTGGTGGTTTAATCCTGGCCGTTTTCATTTTCTGA
**** *
5192594 CTTGTAGTTTAATCTGGGTTGTTTTCATTTTT-GACTAATGGTTTAATCCCTGTCG-T-TTTCAT
66 CTTGTAGTTTAATCTGGCCCATTTTCATTTTTCGACTAATGGCTTAAT---TG-CGATATTTCAT
* * * * ** * *
5192656 TTTTTGACTCGCGATTTAATC-GCGATCATTTTTATTTTTTTGACTTGTGGTTTAATCTCGGTCG
127 TTTTTAACTCACGATTTAATCAGAG-TCATTTTCA-TTTTTTGACCCGTGGTCTAATATCGGTCG
*
5192720 TTCTTCATTTTTTGACTCATGTTTTAAT
190 TTCTTCATTTTTTGACTCATGGTTTAAT
5192748 CACGATCATT
Statistics
Matches: 180, Mismatches: 31, Indels: 15
0.80 0.14 0.07
Matches are distributed among these distances:
239 1 0.01
240 45 0.25
241 116 0.64
242 15 0.08
243 2 0.01
244 1 0.01
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.52
Consensus pattern (240 bp):
GTTTAATCCCGATCGTTTTTCATTTTCTGACTGGTGGTTTAATCCTGGCCGTTTTCATTTTCTGA
CTTGTAGTTTAATCTGGCCCATTTTCATTTTTCGACTAATGGCTTAATTGCGATATTTCATTTTT
TAACTCACGATTTAATCAGAGTCATTTTCATTTTTTGACCCGTGGTCTAATATCGGTCGTTCTTC
ATTTTTTGACTCATGGTTTAATTCTTATCTTTTTTTTTATAGGTA
Found at i:5192708 original size:205 final size:206
Alignment explanation
Indices: 5192262--5192711 Score: 457
Period size: 205 Copynumber: 2.2 Consensus size: 206
5192252 AGTTTAATCT
* * * * * *
5192262 CGATCA-TTTTCATTTTTTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGT
1 CGATCATTTTTCATTTTTTGACTCGTGGTTTAATTCTTATC--TTTT-TTTTTAT-A--GGTAGT
* * * * *
5192326 TTAATCCTGGTTGTTTTTATTTTTTGACTTGTGGTTTAATCTGGCCCATTTTCATTTTTCGACTG
60 TTAATCCCGATCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGCCCATTTTCATTTTTCGACTG
* *
5192391 ATGGCTTAATTGGGAATAATTTCATTTTTTAACTCATGGTTTAATCATAGTCATTTTCATTTTTT
125 ATAGCTTAATTGGGAATAATTTCATTTTTTAACTAATGGTTTAATCATAGTCATTTTCATTTTTT
* *
5192456 GACCCGTGGTCTAATAA
190 GACCCGCGATCTAATAA
* * *
5192473 TGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATTCTTATCTTTTTTTTTATAGGTAGTTTAATC
1 CGATCATTTTTCATTTTTTGACTCGTGGTTTAATTCTTATCTTTTTTTTTATAGGTAGTTTAATC
*
5192538 CCGATCGTTTTCATTTTCTGACTTGTGGTTTAATTCTGG-CCGTTTTCA-TTTTCTGACTTG-TA
66 CCGATCGTTTTCATTTTCTGACTTGTGGTTTAA-TCTGGCCCATTTTCATTTTTC-GAC-TGATA
* * ** * * *
5192600 GTTTAATCTGGG-TTGTTTTCA-TTTTTGACTAATGGTTTAATCCCT-GTCGTTTTCATTTTTTG
128 GCTTAAT-TGGGAATAATTTCATTTTTTAACTAATGGTTTAAT-CATAGTCATTTTCATTTTTTG
* * **
5192662 ACTCGCGATTTAATCG
191 ACCCGCGATCTAATAA
*
5192678 CGATCATTTTT-ATTTTTTTGACTTGTGGTTTAAT
1 CGATCATTTTTCA-TTTTTTGACTCGTGGTTTAAT
5192712 CTCGGTCGTT
Statistics
Matches: 198, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
204 1 0.01
205 77 0.39
206 65 0.33
207 11 0.06
208 1 0.01
209 6 0.03
210 4 0.02
211 3 0.02
212 30 0.15
ACGTcount: A:0.17, C:0.15, G:0.16, T:0.52
Consensus pattern (206 bp):
CGATCATTTTTCATTTTTTGACTCGTGGTTTAATTCTTATCTTTTTTTTTATAGGTAGTTTAATC
CCGATCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGCCCATTTTCATTTTTCGACTGATAGCT
TAATTGGGAATAATTTCATTTTTTAACTAATGGTTTAATCATAGTCATTTTCATTTTTTGACCCG
CGATCTAATAA
Found at i:5192735 original size:72 final size:71
Alignment explanation
Indices: 5192621--5192764 Score: 198
Period size: 72 Copynumber: 2.0 Consensus size: 71
5192611 GTTGTTTTCA
* * *
5192621 TTTTTGACTAATGGTTTAATCCCTGTCGTTTTCATTTTTTGACTCGCGATTTAATCGCGATCATT
1 TTTTTGACTAATGGTTTAATCCCGGTCGTTTTCATTTTTTGACTCACGATTTAATCACGATCATT
*
5192686 TTTATT
66 TTCATT
** * * *
5192692 TTTTTGACTTGTGGTTTAATCTCGGTCGTTCTTCATTTTTTGACTCATGTTTTAATCACGATCAT
1 TTTTTGACTAATGGTTTAATCCCGGTCGTT-TTCATTTTTTGACTCACGATTTAATCACGATCAT
5192757 TTTCATT
65 TTTCATT
5192764 T
1 T
5192765 CTTAACTCGT
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
71 26 0.41
72 37 0.59
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (71 bp):
TTTTTGACTAATGGTTTAATCCCGGTCGTTTTCATTTTTTGACTCACGATTTAATCACGATCATT
TTCATT
Found at i:5192789 original size:107 final size:105
Alignment explanation
Indices: 5192586--5192789 Score: 250
Period size: 107 Copynumber: 1.9 Consensus size: 105
5192576 GCCGTTTTCA
* * * *
5192586 TTTTCTGACTTGTAGTTTAATCTGGGTTGTTTTCATTTTTGACTAATGGTTTAATCCCTGTCGTT
1 TTTTCTGACTTGTAGTTTAATCTCGGTCGTTTTCATTTTTGACTAATGGTTTAATCACTGTCATT
* * *
5192651 TTCATTTTTTGACTCGCGATTTAATCGCGATCATTTTTAT
66 TTCATTTCTTAACTCGCGATTTAATCCCGATCATTTTTAT
* * * *
5192691 TTTTTTGACTTGTGGTTTAATCTCGGTCGTTCTTCATTTTTTGACTCATGTTTTAATCAC-GATC
1 TTTTCTGACTTGTAGTTTAATCTCGGTCGTT-TTCA-TTTTTGACTAATGGTTTAATCACTG-TC
*
5192755 ATTTTCATTTCTTAACTCGTGATTTGAA-CCCGATC
63 ATTTTCATTTCTTAACTCGCGATTT-AATCCCGATC
5192790 GCATTCATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
105 27 0.33
106 5 0.06
107 49 0.59
108 2 0.02
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (105 bp):
TTTTCTGACTTGTAGTTTAATCTCGGTCGTTTTCATTTTTGACTAATGGTTTAATCACTGTCATT
TTCATTTCTTAACTCGCGATTTAATCCCGATCATTTTTAT
Found at i:5192911 original size:35 final size:35
Alignment explanation
Indices: 5192850--5193001 Score: 107
Period size: 35 Copynumber: 4.3 Consensus size: 35
5192840 TTTTTAATCG
* * * *
5192850 TTTTCATTTTCTAACTCGTAGCTTAATTCTAG-TCA
1 TTTTCATTTTCTGACTCATGGTTTAA-TCTAGATCA
*
5192885 TTTTCATTTTCTGACTCATGGTTTAATCCT-GTTCAA
1 TTTTCATTTTCTGACTCATGGTTTAAT-CTAGATC-A
** * **
5192921 TTTTTTTTTTCT-A-TCCGGTGGTTTAATCCCGATCA
1 TTTTCATTTTCTGACT-C-ATGGTTTAATCTAGATCA
* * *
5192956 TTTCCATTTTCTGACTCATGATTTAATCT-TATCA
1 TTTTCATTTTCTGACTCATGGTTTAATCTAGATCA
5192990 TTTTCATTTTCT
1 TTTTCATTTTCT
5193002 AGCTCGTGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
34 18 0.20
35 48 0.52
36 25 0.27
37 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.09, T:0.52
Consensus pattern (35 bp):
TTTTCATTTTCTGACTCATGGTTTAATCTAGATCA
Found at i:5192931 original size:36 final size:35
Alignment explanation
Indices: 5192882--5193001 Score: 93
Period size: 36 Copynumber: 3.4 Consensus size: 35
5192872 TTAATTCTAG
* * *
5192882 TCATTTTCATTTTCTGACTCATGGTTTAATCCTGT
1 TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
*** *
5192917 TCAATTTTTTTTTTCT-A-TCCGGTGGTTTAATCCCGA
1 TC-ATTTCCATTTTCTGACT-C-ATGGTTTAATCCCGA
* **
5192953 TCATTTCCATTTTCTGACTCATGATTTAAT-CTTA
1 TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
*
5192987 TCATTTTCATTTTCT
1 TCATTTCCATTTTCT
5193002 AGCTCGTGCT
Statistics
Matches: 67, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
34 17 0.25
35 22 0.33
36 27 0.40
37 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.09, T:0.53
Consensus pattern (35 bp):
TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
Found at i:5193187 original size:35 final size:35
Alignment explanation
Indices: 5193016--5193179 Score: 136
Period size: 35 Copynumber: 4.7 Consensus size: 35
5193006 CGTGCTTTAA
* * *
5193016 TTTCTGACTGGTGGTTTAATCCAGGTCATTTCCAT
1 TTTCTGACTCGTGGTTTAATCTAGGTCATTTTCAT
* *
5193051 TTTCTGACTCATGGTTTAATCTTA-GTCATTTCCAT
1 TTTCTGACTCGTGGTTTAATC-TAGGTCATTTTCAT
* * **
5193086 TTTCTGCCTCGTGCTTTAATCTAGGTCATTTTGTT
1 TTTCTGACTCGTGGTTTAATCTAGGTCATTTTCAT
* * * * ** *
5193121 TTTCTGACTCAAT-GTTTAGTCCCA-CTTGTTTTCGT
1 TTTCTGACTC-GTGGTTTAAT-CTAGGTCATTTTCAT
5193156 TTTCTGACTCGTGGTTTAATCTAG
1 TTTCTGACTCGTGGTTTAATCTAG
5193180 ATTGTTTTTC
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
34 5 0.05
35 92 0.91
36 4 0.04
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (35 bp):
TTTCTGACTCGTGGTTTAATCTAGGTCATTTTCAT
Found at i:5193320 original size:17 final size:18
Alignment explanation
Indices: 5193295--5193330 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
5193285 ATCATTTTTT
5193295 TTTTAATTTTTTGA-TCG
1 TTTTAATTTTTTGACTCG
*
5193312 TTTTCATTTTTTGACTCG
1 TTTTAATTTTTTGACTCG
5193330 T
1 T
5193331 GGTTTAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.14, C:0.11, G:0.11, T:0.64
Consensus pattern (18 bp):
TTTTAATTTTTTGACTCG
Found at i:5193352 original size:35 final size:35
Alignment explanation
Indices: 5193307--5194724 Score: 535
Period size: 35 Copynumber: 40.5 Consensus size: 35
5193297 TTAATTTTTT
* * *
5193307 GATCGTTTTCATTTTTTGACTCGTGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * *
5193342 AATCATTTTCATTTTCTGACTCAAT-ATTTAATCTC
1 GATCATTTTCATTTTTTGACTC-ATGGTTTAATCTC
* *
5193377 GATCATTTTCCTTTTTCT-AGCT-AGTGGTTTAATGTC
1 GATCATTTTCATTTTT-TGA-CTCA-TGGTTTAATCTC
* *
5193413 GATCATTTTCATTTTCTGACTCGTGGTTTAATC-C
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * *
5193447 TTATCGTTTTCATTTTTTGACT-AGTGATTTTAATC-C
1 -GATCATTTTCATTTTTTGACTCA-TG-GTTTAATCTC
*
5193483 TGATCA-TTT--TTTTTT-ACT-AGTGATTTAATCT-
1 -GATCATTTTCATTTTTTGACTCA-TGGTTTAATCTC
* * * * * * *
5193514 TAGTCGTTGTCATTTCTTAACTTATGATTTAATCTC
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCTC
** * * * * *
5193550 GATTGTTTTCATTTCTTAACTCATGATTTAAACCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
** * *
5193585 GATTGTATTCATTTTTTTGACTCGTGGTTTAATC-C
1 GATCATTTTCA-TTTTTTGACTCATGGTTTAATCTC
* * *
5193620 TGGTCGTTTTCATTTTTTGATTCATGGTTTAATCTC
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* *
5193656 GATCGTTTTCATTTTTTGACTCACGGTTTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* ** * * * * * *
5193691 GGTC-TTTTTGTTTTCTAATTCGTAGTTTAATAC-G
1 GATCATTTTCATTTTTTGACTCATGGTTTAAT-CTC
* ** * *
5193725 GGTCATTTTCATTTTTTGACTCACAGTTCAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * * *
5193760 GATCATTTTCATTTTTTAACTCGTGATTTAATTTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
*** * *
5193795 GATCATTTTTCATTCCCTGA--CATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTTTGACTCATG-G-TTTAATCTC
* ** * * *
5193831 GGTGGTTTTGATTTTTTGACTCATGATTTATTCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
** *
5193866 -AGGAGTTTTCATTTTTTGA--CATGTGATTTAATATC
1 GATCA-TTTTCATTTTTTGACTCATG-G-TTTAATCTC
* * * **
5193901 GATCATTTTCCTTTCTCTGACTCATGATTTAATGAC
1 GATCATTTTCATTT-TTTGACTCATGGTTTAATCTC
* * ** *
5193937 -AGTTATTTTTCATTTTCTGACTTGTGATTTAATCTC
1 GA-TCA-TTTTCATTTTTTGACTCATGGTTTAATCTC
* * *
5193973 GAT-GTTTTCATTTTCTGACTCATGGTTTAATCTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
*
5194007 GATCA--TT--TTTTTTGACTCGTGGTTTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * ** * * *
5194038 GGGT-GTTTTTGTTTTCTGACTCATGATTTAATTTC
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * * * * *
5194073 GGTCTTTTTCATTTTTTTACTTACGATTTAAT-TCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCT-C
* * * ** *
5194108 CATCGCTTTT-ACTTCCTGACTCATGATTTAATC-C
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCTC
* * * * * ** *
5194142 TGGTCATTTTCGTTTTTCTAATTCGTTATTTAATCTTT
1 -GATCATTTTCATTTTT-TGACTCATGGTTTAATC-TC
* ** * * * *
5194180 GTTTGTTTTCATTTTTTGACTCGTGATTTAATTTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * *
5194215 GGT-AGTTTTCATTTTTTGACTTATGGTTTAATCTG
1 GATCA-TTTTCATTTTTTGACTCATGGTTTAATCTC
* ** **
5194250 GCA-CATTTTCATTTTTCGACTCATGGCATAATCAG
1 G-ATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * *
5194285 GATTATCTTCATTTTTTGACT-ATGGTTTAATCATA
1 GATCATTTTCATTTTTTGACTCATGGTTTAATC-TC
* *
5194320 G-TCATTTTCATTTTTTGACCCATGGTCTAATCGT-
1 GATCATTTTCATTTTTTGACTCATGGTTTAATC-TC
* ** *
5194354 GGTCATTTTTCATTTTTTGACTTGTGGTTTAATCTT
1 GATCA-TTTTCATTTTTTGACTCATGGTTTAATCTC
* **** * *
5194390 TATCATTTTTC-TCTTTTTGAGGGGTAGTTTAATCCC
1 GATCA-TTTTCAT-TTTTTGACTCATGGTTTAATCTC
* * * * * *
5194426 GATCGTTTTCATTTTTTTAGTTATGGTTTAGTCCTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAAT-CTC
* * ** * *
5194462 G-TCGTTTTCATTTTCTGACTTGTGGTTTAATATG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* ** * * *
5194496 GGTTGTTATCATTTTTTGACTAATGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* * **
5194531 TG-TCGTTTTCATTTTTTGACTCGTGGTTTAATCGA
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
** *
5194566 GATCATTTTCATTTTTTTGACT--TGCAATTAATTCTT
1 GATCATTTTCA-TTTTTTGACTCATG-GTTTAA-TCTC
* * *
5194602 GATCGTTTTTCATTTTTTGACTCATGTTTTAATCAC
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCTC
* * * * * *
5194638 AATCGTTTTCATTTCTTGACTCGTGATTTGAA-CCC
1 GATCATTTTCATTTTTTGACTCATGGTTT-AATCTC
* * * *
5194673 GATCGTGTTCATTTTCTGACTCATGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
*
5194708 AATCATTTTTC-TTTTTT
1 GATCA-TTTTCATTTTTT
5194725 ATTTTTTGAT
Statistics
Matches: 1048, Mismatches: 257, Indels: 156
0.72 0.18 0.11
Matches are distributed among these distances:
30 1 0.00
31 30 0.03
32 11 0.01
33 14 0.01
34 107 0.10
35 599 0.57
36 245 0.23
37 35 0.03
38 6 0.01
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (35 bp):
GATCATTTTCATTTTTTGACTCATGGTTTAATCTC
Found at i:5193457 original size:71 final size:70
Alignment explanation
Indices: 5193307--5193676 Score: 226
Period size: 71 Copynumber: 5.3 Consensus size: 70
5193297 TTAATTTTTT
*
5193307 GATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATATTTA
1 GATCGTTTTCATTTTTTGACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATATTTA
5193372 ATCTC
66 ATCTC
* * ** * * *
5193377 GATCATTTTCCTTTTTCT-AGCTAGTGGTTTAATGTCGATCATTTTCATTTTCTGACTC-GTGGT
1 GATCGTTTTCATTTTT-TGA-CTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAAT-AT
5193440 TTAATC-C
63 TTAATCTC
* * ** *
5193447 TTATCGTTTTCATTTTTTGACTAGTGATTTTAATCCTGATCATTTT--TTTT-T-ACT-AGTGAT
1 -GATCGTTTTCATTTTTTGACTAGTG-GTTTAATCCCAATCATTTTCATTTTCTGACTCAAT-AT
5193507 TTAATCT-
63 TTAATCTC
* * * * * * * ** *
5193514 TAGTCGTTGTCATTTCTTAACTTA-TGATTTAATCTCGATTGTTTTCA-TTTCTTAACTC-ATGA
1 GA-TCGTTTTCATTTTTTGAC-TAGTGGTTTAATCCCAATCATTTTCATTTTC-TGACTCAAT-A
* *
5193576 TTTAAACCC
62 TTTAATCTC
* * * *** * * * *
5193585 GATTGTATTCATTTTTTTGACTCGTGGTTTAATCCTGGTCGTTTTCATTTTTTGATTC-ATGGTT
1 GATCGTTTTCA-TTTTTTGACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAAT-ATT
5193649 TAATCTC
64 TAATCTC
5193656 GATCGTTTTCATTTTTTGACT
1 GATCGTTTTCATTTTTTGACT
5193677 CACGGTTTAA
Statistics
Matches: 233, Mismatches: 47, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
66 16 0.07
67 33 0.14
68 3 0.01
69 5 0.02
70 53 0.23
71 120 0.52
72 3 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.51
Consensus pattern (70 bp):
GATCGTTTTCATTTTTTGACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATATTTA
ATCTC
Found at i:5193686 original size:106 final size:104
Alignment explanation
Indices: 5193309--5193678 Score: 295
Period size: 106 Copynumber: 3.5 Consensus size: 104
5193299 AATTTTTTGA
* * * * * * *
5193309 TCGTTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATATTTAAT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTC-AGATTTAAA
* ** * * * * *
5193374 CTCGATCATTTTCCTTTTTCTAGCTAGTGGTTTAAT-GTCGA
65 CCCGATTGTATTCATTTTTTTA-CTAGTGGTTTAATCCT-GG
* * * *
5193415 TCATTTTCATTTTCTGACTCGTGGTTTAATC-CTTATCGTTTTCATTTTTTGACT-AGTGATTTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTC-GATCGTTTTCATTTTTTGACTCA--GA-TTT
* * * * * *
5193478 AATCCTGA-T-CATT--TTTTTTTACTAGTGATTTAATCTTAG
62 AAACCCGATTGTATTCATTTTTTTACTAGTGGTTTAATCCTGG
* * * * * * * *
5193517 TCGTTGTCATTTCTTAACTTATGATTTAATCTCGATTGTTTTCATTTCTTAACTCATGATTTAAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCA-GATTTAAA
*
5193582 CCCGATTGTATTCATTTTTTTGACTCGTGGTTTAATCCTGG
65 CCCGATTGTATTCATTTTTTT-ACTAGTGGTTTAATCCTGG
*
5193623 TCGTTTTCATTTTTTGATTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCA
5193679 CGGTTTAATC
Statistics
Matches: 208, Mismatches: 44, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
101 9 0.04
102 56 0.27
103 13 0.06
104 1 0.00
105 10 0.05
106 110 0.53
107 9 0.04
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.51
Consensus pattern (104 bp):
TCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCAGATTTAAAC
CCGATTGTATTCATTTTTTTACTAGTGGTTTAATCCTGG
Found at i:5193963 original size:72 final size:70
Alignment explanation
Indices: 5193759--5194003 Score: 206
Period size: 71 Copynumber: 3.5 Consensus size: 70
5193749 AGTTCAATCC
* * * ** * **
5193759 CGATCATTTTCATTTTTTAACTCGTGATTTAATTTC-GATCATTTTTCATTCCCTGACATGTGAT
1 CGAT-ATTTTCATTTTCTGACTCATGATTTAATGACAG-TTATTTTTCATTTTCTGACATGTGAT
* *
5193823 TTAGTTT
64 TTAATAT
* * * * * ** * * *
5193830 CGGTGGTTTTGATTTTTTGACTCATGATTTATTCTCAG-GAGTTTTCATTTTTTGACATGTGATT
1 CGAT-ATTTTCATTTTCTGACTCATGATTTAATGACAGTTATTTTTCATTTTCTGACATGTGATT
5193894 TAATAT
65 TAATAT
* *
5193900 CGATCATTTTCCTTTCTCTGACTCATGATTTAATGACAGTTATTTTTCATTTTCTGACTTGTGAT
1 CGAT-ATTTTCATTT-TCTGACTCATGATTTAATGACAGTTATTTTTCATTTTCTGACATGTGAT
*
5193965 TTAATCT
64 TTAATAT
* *
5193972 CGATGTTTTCATTTTCTGACTCATGGTTTAAT
1 CGATATTTTCATTTTCTGACTCATGATTTAAT
5194004 CTTGATCATT
Statistics
Matches: 139, Mismatches: 32, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
70 52 0.37
71 55 0.40
72 32 0.23
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (70 bp):
CGATATTTTCATTTTCTGACTCATGATTTAATGACAGTTATTTTTCATTTTCTGACATGTGATTT
AATAT
Found at i:5194300 original size:69 final size:69
Alignment explanation
Indices: 5194220--5194388 Score: 202
Period size: 69 Copynumber: 2.4 Consensus size: 69
5194210 ATTTTGGTAG
* *
5194220 TTTTCATTTTTTGACTTATGGTTTAATCTGGCACATTTTCATTTTTCGACTCATGG-CATAATC-
1 TTTTCATTTTTTGACTTATGGTTTAATCTAG-ACATTTTCATTTTTCGACCCATGGTC-TAATCG
5194283 AGG-AT
64 AGGCAT
* *
5194288 TATCTTCATTTTTTGAC-TATGGTTTAATCATAGTCATTTTCATTTTTTGACCCATGGTCTAATC
1 T-T-TTCATTTTTTGACTTATGGTTTAATC-TAGACATTTTCATTTTTCGACCCATGGTCTAATC
*
5194352 GTGGTCAT
63 GAGG-CAT
*
5194360 TTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTTATGGTTTAATCT
5194389 TTATCATTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
68 1 0.01
69 39 0.45
70 32 0.37
71 12 0.14
72 3 0.03
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.50
Consensus pattern (69 bp):
TTTTCATTTTTTGACTTATGGTTTAATCTAGACATTTTCATTTTTCGACCCATGGTCTAATCGAG
GCAT
Found at i:5194962 original size:35 final size:35
Alignment explanation
Indices: 5194758--5195157 Score: 178
Period size: 35 Copynumber: 11.7 Consensus size: 35
5194748 AACTCGTAGC
*
5194758 TTAATTCCAGTCATTTTCATTTTTTGACTCATGGT
1 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
*
5194793 TTAA-TCCTGTTCA-TTTCACTTTTTCTGAC-CGATGGT
1 TTAATTCCAG-TCATTTTCA--TTTTCTGACTC-ATGGT
*** **
5194829 TTAATTTGGGTTGTTTTCATTGTT-TGACTCATGGT
1 TTAATTCCAGTCATTTTCATT-TTCTGACTCATGGT
* *
5194864 TTAATCCCAATCATTTT--TCTTT-T---TCAT--T
1 TTAATTCCAGTCATTTTCAT-TTTCTGACTCATGGT
* * * * *
5194892 TT--TT-GA-TCATTTTCATTTTCTAACTCGTAGC
1 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
5194923 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
1 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
* * * *
5194958 TTAA-TCCTGTTCATTTCTCTTTTTTTGAC-CGGTGGT
1 TTAATTCCAG-TCATTT-TCATTTTCTGACTC-ATGGT
* * *
5194994 TTAATCCCGGTCATTTCCATTTTCTGACTCATGGT
1 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
* * * * * *
5195029 TTAA-TCTTAGTCGTTTCCATTTTCTGGCTCGTGCT
1 TTAATTC-CAGTCATTTTCATTTTCTGACTCATGGT
* * * *
5195064 TTAA-TCTAGGTCATTTTCTTTTTCCGACTTAAT-GT
1 TTAATTCCA-GTCATTTTCATTTTCTGAC-TCATGGT
* * ** * *
5195099 TTAATCCCACTTGTTTTCATTTTTTGACTCATCGT
1 TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
*
5195134 TTAA-TCCTAGTTCTTTTTCATTTT
1 TTAATTCC-AG-TCATTTTCATTTT
5195158 TTAGCTCGTA
Statistics
Matches: 271, Mismatches: 61, Indels: 65
0.68 0.15 0.16
Matches are distributed among these distances:
24 7 0.03
25 4 0.01
26 3 0.01
28 3 0.01
29 3 0.01
30 4 0.01
31 2 0.01
33 6 0.02
34 23 0.08
35 145 0.54
36 61 0.23
37 10 0.04
ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51
Consensus pattern (35 bp):
TTAATTCCAGTCATTTTCATTTTCTGACTCATGGT
Found at i:5194963 original size:165 final size:164
Alignment explanation
Indices: 5194680--5195034 Score: 577
Period size: 165 Copynumber: 2.2 Consensus size: 164
5194670 CCCGATCGTG
* *
5194680 TTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTTATTTTTTGATCGTTTTCATT
1 TTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCATTTTCATT
*
5194745 TCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGTTCATTTC
66 TCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTGTTCATTTC
*** **
5194810 ACTTTTTCTGACCGATGGTTTAATTTGGGTTGTT
131 ACTTTTTCTGACCGATGGTTTAATCCCGGTCATT
5194844 TTCATTGTT-TGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCATTTTCAT
1 TTCATT-TTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCATTTTCA-
5194908 TTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTGTTCATT
64 TTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTGTTCATT
* * *
5194973 TCTCTTTTTTTGACCGGTGGTTTAATCCCGGTCATT
129 TCACTTTTTCTGACCGATGGTTTAATCCCGGTCATT
*
5195009 TCCATTTTCTGACTCATGGTTTAATC
1 TTCATTTTCTGACTCATGGTTTAATC
5195035 TTAGTCGTTT
Statistics
Matches: 176, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
164 60 0.34
165 116 0.66
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (164 bp):
TTCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTGATCATTTTCATT
TCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCCTGTTCATTTC
ACTTTTTCTGACCGATGGTTTAATCCCGGTCATT
Found at i:5195158 original size:35 final size:35
Alignment explanation
Indices: 5194936--5195202 Score: 120
Period size: 35 Copynumber: 7.5 Consensus size: 35
5194926 ATTCCAGTCA
5194936 TTTTCATTTTCTGACTCATGGTTTAATCCT-GTTCAT
1 TTTTCATTTT-TGACTCATGGTTTAATCCTAGTTC-T
* * * * * *
5194972 TTCTCTTTTTTTGAC-CGGTGGTTTAATCC-CGGTCA
1 TTTTC-ATTTTTGACTC-ATGGTTTAATCCTAGTTCT
* * *
5195007 TTTCCATTTTCTGACTCATGGTTTAATCTTAG-TCG
1 TTTTCATTTT-TGACTCATGGTTTAATCCTAGTTCT
* * * * * *
5195042 TTTCCATTTTCTGGCTCGTGCTTTAAT-CTAGGTCA
1 TTTTCATTTT-TGACTCATGGTTTAATCCTAGTTCT
* * * *
5195077 TTTTC-TTTTTCCGACTTAAT-GTTTAATCCCACTT-G
1 TTTTCATTTTT--GAC-TCATGGTTTAATCCTAGTTCT
*
5195112 TTTTCATTTTTTGACTCATCGTTTAATCCTAGTTCT
1 TTTTCA-TTTTTGACTCATGGTTTAATCCTAGTTCT
* * ** * *
5195148 TTTTCATTTTTTAGCTCGTACTTTAATCCCAG-TAT
1 TTTTCATTTTTGA-CTCATGGTTTAATCCTAGTTCT
*
5195183 TTTTCATTTCTTAACTCATG
1 TTTTCATTT-TTGACTCATG
5195203 ATTCAAACTG
Statistics
Matches: 175, Mismatches: 39, Indels: 35
0.70 0.16 0.14
Matches are distributed among these distances:
33 1 0.01
34 14 0.08
35 99 0.57
36 52 0.30
37 9 0.05
ACGTcount: A:0.16, C:0.21, G:0.12, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTGACTCATGGTTTAATCCTAGTTCT
Found at i:5195315 original size:35 final size:35
Alignment explanation
Indices: 5195267--5195754 Score: 335
Period size: 35 Copynumber: 13.9 Consensus size: 35
5195257 TTTCATTTTT
*
5195267 CGATCGTTTTCATTTTTTGACTGGTGGTTTAATCC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5195302 CAATCGTTTTCATTTTTTGACTCAAT-GTTTAATCT
1 CGATCGTTTTCATTTTTTGACTC-GTGGTTTAATCC
* * * *
5195337 CGATCCTTTTCCTTTTTCT-AGCTAGTGGTTTAATCT
1 CGATCGTTTTCATTTTT-TGA-CTCGTGGTTTAATCC
* *
5195373 CGATCATTTTCATTTTCTGACTCGTGGTTTAATCC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
** * * *
5195408 TTATCATTTTCATTTTTTGACTAGTGATTTAATCC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
5195443 TGGTCATTTT--TTATTTCTGACTTGTGATTTAATCT
1 CGATCGTTTTCATT-TTT-TGACTCGTGGTTTAATCC
* * * *
5195478 C-AGTCGTTGTCATTTCTTGACTCATGATTTAATCC
1 CGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
5195513 CGATTGTTTTCATTTCTTAACTCGTGATTTAAACC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5195548 TGATTGTATTT-ATTCTTTTGACTCGTGGATTAATCC
1 CGATCGT-TTTCATT-TTTTGACTCGTGGTTTAATCC
* * * * *
5195584 TGGTCGTTTTTATTTTTTGACTCATGGTTTAATCT
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
5195619 CGGTCGTTTTCATTTTCTGACTCGCGGTTTAATCT
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
5195654 CGATC-TTTT-GTTTTCTAACTCTTAGTTTAATAC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * ***
5195687 GGGTCATTTTCATTTTTTGACTCACAGTTTAATCC
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5195722 CGATCATTTTCATTTTTTAACTCGTGATTTAAT
1 CGATCGTTTTCATTTTTTGACTCGTGGTTTAAT
5195755 TTCGGTCATT
Statistics
Matches: 362, Mismatches: 75, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
33 22 0.06
34 11 0.03
35 269 0.74
36 58 0.16
37 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.50
Consensus pattern (35 bp):
CGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
Found at i:5195638 original size:176 final size:176
Alignment explanation
Indices: 5195270--5195654 Score: 397
Period size: 176 Copynumber: 2.2 Consensus size: 176
5195260 CATTTTTCGA
* * * * *
5195270 TCGTTTTCATTTTTTGACTGGTGGTTTAATCCCAATCGTTTTCATTTTTTGACTCAATGTTTAAT
1 TCGTTTTCATTTTCTGACTCGTGGTTTAATCTCAATCGTTGTCATTTCTTGACTCAATGTTTAAT
* * * * * *
5195335 CTCGATCCTTTTCCTTTTTCTAGCTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGG
66 CCCGATCCTTTTCATTTCTCTAACTAGTGATTTAACCTCGATCATTTTCATTTTCTGACTCGTGG
* *
5195400 TTTAATCCTTATCATTTTCATTTTTTGACTAGTGATTTAATCCTGG
131 ATTAATCCTGATCATTTTCATTTTTTGACTAGTGATTTAATCCTGG
* * * * *
5195446 TCATTTT-TTATTTCTGACTTGTGATTTAATCTCAGTCGTTGTCATTTCTTGACTC-ATGATTTA
1 TCGTTTTCAT-TTTCTGACTCGTGGTTTAATCTCAATCGTTGTCATTTCTTGACTCAATG-TTTA
** * ** *
5195509 ATCCCGATTGTTTTCATTTCT-TAACTCGTGATTTAAACCT-GATTGTATTT-ATTCTTTTGACT
64 ATCCCGATCCTTTTCATTTCTCTAACTAGTGATTT-AACCTCGATCAT-TTTCATT-TTCTGACT
* * * *
5195571 CGTGGATTAATCCTGGTCGTTTTTATTTTTTGACTCA-TGGTTTAAT-CTCGG
126 CGTGGATTAATCCTGATCATTTTCATTTTTTGACT-AGTGATTTAATCCT-GG
*
5195622 TCGTTTTCATTTTCTGACTCGCGGTTTAATCTC
1 TCGTTTTCATTTTCTGACTCGTGGTTTAATCTC
5195655 GATCTTTTGT
Statistics
Matches: 169, Mismatches: 32, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
175 23 0.14
176 144 0.85
177 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (176 bp):
TCGTTTTCATTTTCTGACTCGTGGTTTAATCTCAATCGTTGTCATTTCTTGACTCAATGTTTAAT
CCCGATCCTTTTCATTTCTCTAACTAGTGATTTAACCTCGATCATTTTCATTTTCTGACTCGTGG
ATTAATCCTGATCATTTTCATTTTTTGACTAGTGATTTAATCCTGG
Found at i:5195650 original size:141 final size:140
Alignment explanation
Indices: 5195268--5195708 Score: 391
Period size: 141 Copynumber: 3.1 Consensus size: 140
5195258 TTCATTTTTC
* * * *** *
5195268 GATCGTTTTCATTTTTTGACTGGTGGTTTAATCCCAATCGTTTTCATTTTTTGACTCAAT-GTTT
1 GATCATTTTCATTTTTTGACTAGTGGATTAATCCTGGTCGTTTTTATTTTTTGACTC-ATGGTTT
* * * * *
5195332 AATCTCGATCCTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGATCATTTTCATTTTCTGACTC
65 AATCTCGGTCGTTTT-CATTTTCTGA-CTCGTGGTTTAATCTCGATCATTTTCATTTTCTAACTC
* *
5195396 GTGGTTTAATCCT
128 GTGATTTAAACCT
* * * ** *
5195409 TATCATTTTCATTTTTTGACTAGT-GATTTAATCCTGGTCATTTTT-TATTTCTGACTTGTGATT
1 GATCATTTTCATTTTTTGACTAGTGGA-TTAATCCTGGTCGTTTTTAT-TTTTTGACTCATGGTT
* * * * * **
5195472 TAATCTCAGTCGTTGTCA-TTTCTTGACTCATGATTTAATCCCGATTGTTTTCA-TTTCTTAACT
64 TAATCTCGGTCGTTTTCATTTTC-TGACTCGTGGTTTAATCTCGATCATTTTCATTTTC-TAACT
5195535 CGTGATTTAAACCT
127 CGTGATTTAAACCT
** *
5195549 GATTGTATTT-ATTCTTTTGACTCGTGGATTAATCCTGGTCGTTTTTATTTTTTGACTCATGGTT
1 GATCAT-TTTCATT-TTTTGACTAGTGGATTAATCCTGGTCGTTTTTATTTTTTGACTCATGGTT
* *
5195613 TAATCTCGGTCGTTTTCATTTTCTGACTCGCGGTTTAATCTCGATC-TTTT-GTTTTCTAACTC-
64 TAATCTCGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCTCGATCATTTTCATTTTCTAACTCG
* *
5195675 TTAGTTTAATA-CG
129 TGA-TTTAA-ACCT
*
5195688 GGTCATTTTCATTTTTTGACT
1 GATCATTTTCATTTTTTGACT
5195709 CACAGTTTAA
Statistics
Matches: 236, Mismatches: 49, Indels: 33
0.74 0.15 0.10
Matches are distributed among these distances:
138 13 0.06
139 26 0.11
140 57 0.24
141 133 0.56
142 7 0.03
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (140 bp):
GATCATTTTCATTTTTTGACTAGTGGATTAATCCTGGTCGTTTTTATTTTTTGACTCATGGTTTA
ATCTCGGTCGTTTTCATTTTCTGACTCGTGGTTTAATCTCGATCATTTTCATTTTCTAACTCGTG
ATTTAAACCT
Found at i:5195764 original size:35 final size:35
Alignment explanation
Indices: 5195266--5196175 Score: 327
Period size: 35 Copynumber: 26.0 Consensus size: 35
5195256 CTTTCATTTT
* * *
5195266 TCGATCGTTTTCATTTTTTGACTGGTGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* * * *
5195301 CCAATCGTTTTCATTTTTTGACTCAATG-TTTAATC
1 TCGATCATTTTCATTTTTTGACTC-GTGATTTAATC
* * * *
5195336 TCGATCCTTTTCCTTTTTCT-AGCTAGTGGTTTAATC
1 TCGATCATTTTCATTTTT-TGA-CTCGTGATTTAATC
* *
5195372 TCGATCATTTTCATTTTCTGACTCGTGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* *
5195407 -CTTATCATTTTCATTTTTTGACTAGTGATTTAATC
1 TC-GATCATTTTCATTTTTTGACTCGTGATTTAATC
* *
5195442 -CTGGTCATTTT--TTATTTCTGACTTGTGATTTAATC
1 TC-GATCATTTTCATT-TTT-TGACTCGTGATTTAATC
* * * *
5195477 TC-AGTCGTTGTCATTTCTTGACTCATGATTTAATC
1 TCGA-TCATTTTCATTTTTTGACTCGTGATTTAATC
* ** * * *
5195512 CCGATTGTTTTCATTTCTTAACTCGTGATTTAAAC
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
**
5195547 -CTGATTGTATTT-ATTCTTTTGACTCGTGGA-TTAATC
1 TC-GATCAT-TTTCATT-TTTTGACTCGT-GATTTAATC
* * * * *
5195583 -CTGGTCGTTTTTATTTTTTGACTCATGGTTTAATC
1 TC-GATCATTTTCATTTTTTGACTCGTGATTTAATC
* * * * *
5195618 TCGGTCGTTTTCATTTTCTGACTCGCGGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* * * *
5195653 TCGATC-TTTT-GTTTTCTAACTC-TTAGTTTAATAC
1 TCGATCATTTTCATTTTTTGACTCGTGA-TTTAAT-C
* * **
5195687 -GGGTCATTTTCATTTTTTGACTC-ACAGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGA-TTTAATC
* * *
5195721 CCGATCATTTTCATTTTTTAACTCGTGATTTAATT
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* *** * *
5195756 TCGGTCATTTTTCATTCCCTGACAT-GTGATTTAGTT
1 TCGATCA-TTTTCATTTTTTGAC-TCGTGATTTAATC
* ** * * * *
5195792 TCGGTGGTTTTGATTTTCTGACTCATGATTTATTC
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* *
5195827 -CCAGT-AGTTTTCATTTTTTGACAT-GTGATTTAATA
1 TCGA-TCA-TTTTCATTTTTTGAC-TCGTGATTTAATC
* * * * * *
5195862 TCGATTATTTTCATTTCTCTGATTCATGATATAATG
1 TCGATCATTTTCATTT-TTTGACTCGTGATTTAATC
* ** * *
5195898 ACGATTGTTTTTCATTTTTTTGACTTC-TGATTTACTT
1 TCGA-TCATTTTCA-TTTTTTGAC-TCGTGATTTAATC
* **
5195935 TCGATCGTTTTCATTTTTTGACTC-ACAGTTTAATC
1 TCGATCATTTTCATTTTTTGACTCGTGA-TTTAATC
* *
5195970 -CTGATCA-TTT--TTTTTT-ACTCATGGTTTAATC
1 TC-GATCATTTTCATTTTTTGACTCGTGATTTAATC
* ** ** * * *
5196001 TCGGTTGTTTTTGTTTTCTGACTCATGATTTAATT
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
* * * *
5196036 TTGGTCTTTTTCATTTTTTGACTTACG-G-TTTAATT
1 TCGATCATTTTCATTTTTTGAC-T-CGTGATTTAATC
* * *** *
5196071 TCCATCGCTTTT-ATTCCCTGACTCATGATTTAATC
1 TCGATC-ATTTTCATTTTTTGACTCGTGATTTAATC
* * * * *
5196106 -CTGGTCATTTTCGTTTTTCTTATTCTTGATTTAATCC
1 TC-GATCATTTTCATTTTT-TGACTCGTGATTTAAT-C
* ** *
5196143 TTG-TTGTTTTCATTTTTTGACTTGTGATTTAAT
1 TCGATCATTTTCATTTTTTGACTCGTGATTTAAT
5196176 TTTGATTGTT
Statistics
Matches: 667, Mismatches: 151, Indels: 114
0.72 0.16 0.12
Matches are distributed among these distances:
31 13 0.02
32 10 0.01
33 22 0.03
34 37 0.06
35 409 0.61
36 142 0.21
37 29 0.04
38 5 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.52
Consensus pattern (35 bp):
TCGATCATTTTCATTTTTTGACTCGTGATTTAATC
Found at i:5196244 original size:21 final size:21
Alignment explanation
Indices: 5196218--5196264 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
5196208 AATCCCTCTC
* *
5196218 ATTTTCTTTTTCTGACTTATG
1 ATTTTCATTTTCTGACTCATG
*
5196239 ATTTTCATTTTCTGACTCGTG
1 ATTTTCATTTTCTGACTCATG
5196260 ATTTT
1 ATTTT
5196265 TTCTTAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.60
Consensus pattern (21 bp):
ATTTTCATTTTCTGACTCATG
Found at i:5196311 original size:35 final size:35
Alignment explanation
Indices: 5196272--5196840 Score: 339
Period size: 35 Copynumber: 16.2 Consensus size: 35
5196262 TTTTTCTTAG
*
5196272 TCATTTTCATTTTTTGACTCATAGTTTAATCTCGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* *
5196307 TCATTTTCATTTTTTGACCCATGGTTTAATC-CTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
* * **
5196342 TCGTTTTTCTTTTTTTGACTGGTGGTTTAATCT---
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGA
** * ** * *
5196375 TTGTTTTCATTTTTTTACTTGTGGTTTAATCTGGC
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * **
5196410 TCATTTTCATTTTTCGACTCATGGCTTAATCGGGA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* *
5196445 TTATTTTCATTTTTTGACTCATGGTTTAATCGTAG-
1 TCATTTTCATTTTTTGACTCATGGTTTAATC-TCGA
* *
5196480 TCATTTTCATTTTTTGAC-CTATGGTCTAATCAT-GG
1 TCATTTTCATTTTTTGACTC-ATGGTTTAATC-TCGA
* ** * *
5196515 TCGTTTTTCATTTTTTGACTGGTGGTTTAATCCCTA
1 TC-ATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* * ** * * *
5196551 TTATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAA
1 TCA-TTTTCATTTTTTGACT-CATGGTTTAATCTCGA
* * ** *
5196587 TCGTTTTCATTTTCTGACTTGTGGTTTAATC-CTGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTC-GA
* * * * *
5196622 CCGTTTTCATTTTTTGACTAATGGTTTAATCCCCA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
** * ** * *
5196657 TTGTTTTCATTTTTAGACTCGCGGTTTAATCGCGG
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
* *
5196692 TCATTTTCATTTTTTTGACTTATGGTTTAATCTCGG
1 TCATTTTCA-TTTTTTGACTCATGGTTTAATCTCGA
* * * *
5196728 TCGTTCTTCATTTTTTGACTCGTGTTTTAATCACGA
1 TCATT-TTCATTTTTTGACTCATGGTTTAATCTCGA
* * * * *
5196764 TCGTTTTCATTTCTTGACTCGTGATTTGAA-CCCGA
1 TCATTTTCATTTTTTGACTCATGGTTT-AATCTCGA
*** * * * *
5196799 TCGCATTCATTTTCTAACTCATGGTTTAATCCCAA
1 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
5196834 TCATTTT
1 TCATTTT
5196841 TCTTTTTCAT
Statistics
Matches: 421, Mismatches: 92, Indels: 42
0.76 0.17 0.08
Matches are distributed among these distances:
32 26 0.06
33 1 0.00
34 6 0.01
35 251 0.60
36 133 0.32
37 4 0.01
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCTCGA
Found at i:5196370 original size:71 final size:70
Alignment explanation
Indices: 5196240--5196840 Score: 409
Period size: 70 Copynumber: 8.6 Consensus size: 70
5196230 TGACTTATGA
* * * * * *
5196240 TTTTCATTTTCTGACTCGTGATTT-TTTCTTAGTCATTTTCATTTTTTGACTCATAGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCATTTTCATTTTTTGACTCATGGTTTAATCT
*
5196304 CGATCA
65 CGATCG
* * * * * **
5196310 TTTTCATTTTTTGACCCATGGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-ATTTTCATTTTTTGACTCATGGTTTAATCT
*
5196375 ---TTG
65 CGATCG
* * * * * *
5196378 TTTTCATTTTTTTACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTCGACTCATGGCTTAATCG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCATTTTCATTTTTTGACTCATGGTTTAATCT
* **
5196442 GGATTA
65 CGATCG
* * *
5196448 TTTTCATTTTTTGACTCATGGTTTAATCGT-AGTCATTTTCATTTTTTGAC-CTATGGTCTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCATTTTCATTTTTTGACTC-ATGGTTTAATC
*
5196511 AT-GGTCG
64 -TCGATCG
* * * ** *
5196518 TTTTTCATTTTTTGACTGGTGGTTTAATCCCT-ATTATTTTTCTTTTTTTGA-TGGGTAGTTTAA
1 -TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCA-TTTTCATTTTTTGACT-CATGGTTTAA
* *
5196581 TCCCAATCG
62 TCTCGATCG
* * ** * * *
5196590 TTTTCATTTTCTGACTTGTGGTTTAATCCTGGCCGTTTTCATTTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTAATCTC
* *
5196655 CATTG
66 GATCG
* * * *
5196660 TTTTCATTTTTAGACTCGCGGTTTAATCGC-GGTCATTTTCATTTTTTTGACTTATGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCATTTTCA-TTTTTTGACTCATGGTTTAATC
*
5196724 TCGGTCG
64 TCGATCG
* * * * *
5196731 TTCTTCATTTTTTGACTCGTGTTTTAATCAC-GATCGTTTTCATTTCTTGACTCGTGATTTGAA-
1 TT-TTCATTTTTTGACTCGTGGTTTAATC-CTGATCATTTTCATTTTTTGACTCATGGTTT-AAT
*
5196794 CCCGATCG
63 CTCGATCG
** * * * **
5196802 CATTCATTTTCTAACTCATGGTTTAATCCCAATCATTTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCATTTT
5196841 TCTTTTTCAT
Statistics
Matches: 413, Mismatches: 95, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
67 25 0.06
68 26 0.06
69 2 0.00
70 168 0.41
71 130 0.31
72 62 0.15
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (70 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTAATCTC
GATCG
Found at i:5196388 original size:33 final size:31
Alignment explanation
Indices: 5196346--5196406 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 31
5196336 TCCTAATCGT
5196346 TTTTCTTTTTTTGACTGGTGGTTTAATCTTTG
1 TTTTCTTTTTTT-ACTGGTGGTTTAATCTTTG
*
5196378 TTTTCATTTTTTTACTTGTGGTTTAATCT
1 TTTTC-TTTTTTTACTGGTGGTTTAATCT
5196407 GGCTCATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.11, C:0.10, G:0.15, T:0.64
Consensus pattern (31 bp):
TTTTCTTTTTTTACTGGTGGTTTAATCTTTG
Found at i:5196451 original size:138 final size:140
Alignment explanation
Indices: 5196272--5196546 Score: 351
Period size: 138 Copynumber: 2.0 Consensus size: 140
5196262 TTTTTCTTAG
* * *
5196272 TCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCCATGGTTTAAT
1 TCATTTTCATTTTTCGACTCATAGCTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
* * * * * * *
5196337 CCTAATCGTTTTTCTTTTTTTGA-CTGGTGGTTTAATC-T-TTG-TTTTCATTTTTTTACTTGTG
66 CCTAATC-ATTTTCATTTTTTGACCT-ATGGTCTAATCATGTCGTTTTTCATTTTTTGACTGGTG
5196398 GTTTAATCTGGC
129 GTTTAATCTGGC
* * * *
5196410 TCATTTTCATTTTTCGACTCATGGCTTAATCGGGATTATTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTTCGACTCATAGCTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
* *
5196475 CGTAGTCATTTTCATTTTTTGACCTATGGTCTAATCATGGTCGTTTTTCATTTTTTGACTGGTGG
66 CCTAATCATTTTCATTTTTTGACCTATGGTCTAATCAT-GTCGTTTTTCATTTTTTGACTGGTGG
5196540 TTTAATC
130 TTTAATC
5196547 CCTATTATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
137 22 0.19
138 66 0.57
140 2 0.02
141 26 0.22
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (140 bp):
TCATTTTCATTTTTCGACTCATAGCTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
CCTAATCATTTTCATTTTTTGACCTATGGTCTAATCATGTCGTTTTTCATTTTTTGACTGGTGGT
TTAATCTGGC
Found at i:5196866 original size:17 final size:17
Alignment explanation
Indices: 5196844--5196887 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
5196834 TCATTTTTCT
5196844 TTTTCATTTTTTGATCG
1 TTTTCATTTTTTGATCG
5196861 TTTTCATTTTTTGATCG
1 TTTTCATTTTTTGATCG
5196878 TTTTCATTTT
1 TTTTCATTTT
5196888 CTAACTCGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.68
Consensus pattern (17 bp):
TTTTCATTTTTTGATCG
Found at i:5196949 original size:35 final size:35
Alignment explanation
Indices: 5196910--5197013 Score: 102
Period size: 36 Copynumber: 2.9 Consensus size: 35
5196900 TTAACTCCAG
*
5196910 TCATTTTCATTTTATGACTCATGGTTTAATCTTGT
1 TCATTTTCATTTTATGACTCATGGTTTAATCTTGA
* * * **
5196945 TCATTTTTCTTTTTTTGAC-CGGTGGTTTAATCCCGA
1 TCA-TTTTCATTTTATGACTC-ATGGTTTAATCTTGA
* * *
5196981 TCATTTCCATTTTCTGACTCATGATTTAATCTT
1 TCATTTTCATTTTATGACTCATGGTTTAATCTT
5197014 AGTCGTTTCC
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
35 25 0.47
36 28 0.53
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTATGACTCATGGTTTAATCTTGA
Found at i:5197113 original size:35 final size:35
Alignment explanation
Indices: 5196878--5197175 Score: 142
Period size: 35 Copynumber: 8.5 Consensus size: 35
5196868 TTTTTGATCG
* * * * *
5196878 TTTTCATTTTCTAACTCGTAGCTTAA-CTCCAGTCA
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CCAGTAA
* * ** *
5196913 TTTTCATTTTATGACTCATGGTTTAAT-CTTGTTCAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAG-T-AA
* *
5196949 TTTTCTTTTTTTGAC-CGGTGGTTTAATCCC-GATCA
1 TTTTCATTTTTTGACTC-GTGGTTTAATCCCAG-TAA
* * * * ** **
5196984 TTTCCATTTTCTGACTCATGATTTAATCTTAGTCG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAGTAA
* * * **
5197019 TTTCCATTTTTTGGCTCGTGCTTTAATCTAAGTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAGTAA
* * **
5197054 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTG
1 TTTTCATTTTT-TGACTC-GTGGTTTAATCCCAGTAA
**
5197089 TTTTCATTTTTTGACTCGTGGTTTAAT-CCAGGTTGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCA-G-TAA
* * **
5197125 TTTTCATTTTTTAACTTGTACTTTAATCCCAGTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAGTAA
*
5197160 TTTTCATTTCTTGACT
1 TTTTCATTTTTTGACT
5197176 AATGATTCAA
Statistics
Matches: 197, Mismatches: 52, Indels: 28
0.71 0.19 0.10
Matches are distributed among these distances:
34 11 0.06
35 125 0.63
36 57 0.29
37 4 0.02
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCCAGTAA
Found at i:5197296 original size:35 final size:35
Alignment explanation
Indices: 5197244--5197988 Score: 245
Period size: 35 Copynumber: 21.0 Consensus size: 35
5197234 TCTCATTTTT
*
5197244 CGATCATTTTCATTTTCTGACTCGTGGTTTAATCC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * *
5197279 CAATCGTTTTCATTTTCTGACTCAAT-GTTTAATCT
1 CGATCGTTTTCATTTTCTGACTC-GTGGTTTAATCC
* *
5197314 CGATCATTTTCCATTTTCT-AGCTAGTGGTTTAATCTC
1 CGATCGTTTT-CATTTTCTGA-CTCGTGGTTTAATC-C
* * *
5197351 GGTCATTTTCATTTTCATTTTTTGACTCGTGGTTTAATCC
1 CG--A---TCGTTTTCATTTTCTGACTCGTGGTTTAATCC
** * * *
5197391 TTATCGTTTTCAATTTT-TGTCTAGTGATTTAAT-C
1 CGATCGTTTTC-ATTTTCTGACTCGTGGTTTAATCC
* * * * *
5197425 CTAGTCATTTT-TTATTTCTGACTCGTGATTTAATCT
1 CGA-TCGTTTTCAT-TTTCTGACTCGTGGTTTAATCC
* * * *
5197461 C-AGTCCTTGTCA-TTTCTTGACTCATGATTTAATCC
1 CGA-TCGTTTTCATTTTC-TGACTCGTGGTTTAATCC
* * * * *
5197496 CGATTGTTTTC-GTTTCTTAACTCGTGATTTAAACC
1 CGATCGTTTTCATTTTC-TGACTCGTGGTTTAATCC
* * * * * *
5197531 CGATTGTATTAATTTTTTTGACTCATGGATTAATCC
1 CGATCGTTTTCA-TTTTCTGACTCGTGGTTTAATCC
* * * * *
5197567 TGGA-CGTTTTTATTTTTTGACTCATGGTTTAATCT
1 -CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * * *
5197602 CGATCGTTTTCATTTTTTGACTCGCGATTTAATCT
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * ** * * * *
5197637 TGATCTTTTTTGTTTTCTAACTCTTAGTTTAATAC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * * * ****
5197672 GGGTCATTTTCATTTTTTGACTCACAATTTAATCC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * * * **
5197707 CGATCATTTTCATTTTTTAACTCGTGATTTAATTT
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * ** * * **
5197742 CGGTCATTTTTCATTCCCTGACAT-GTGATTTAGTTT
1 CGATC-GTTTTCATTTTCTGAC-TCGTGGTTTAATCC
* * * * * *
5197778 CGGTGGTTTTGATTTTCTGACTCATGATTTATTCC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * ** **
5197813 C-AGTAGTTTTCATTTTTTGACAT-GTAATTTAATAA
1 CGA-TCGTTTTCATTTTCTGAC-TCGTGGTTTAATCC
* * * * **
5197848 CGATCATTTTCATTTCTCTGATTCATGATTTAATGA
1 CGATCGTTTTCATTT-TCTGACTCGTGGTTTAATCC
* * * * * * *
5197884 CGGTTGTTTTTGATTTTCTGACTTGTGATTTACTCT
1 CGATCG-TTTTCATTTTCTGACTCGTGGTTTAATCC
* *** *
5197920 CGATCGTTTTCATTTTTTGACTCACAGTTTGATCC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
* * *
5197955 TGATCATTTTCATTTTTTGACTCGTGGTTTAATC
1 CGATCGTTTTCATTTTCTGACTCGTGGTTTAATC
5197989 TCGGTTGTTT
Statistics
Matches: 531, Mismatches: 146, Indels: 66
0.71 0.20 0.09
Matches are distributed among these distances:
33 1 0.00
34 13 0.02
35 365 0.69
36 106 0.20
37 15 0.03
38 1 0.00
39 1 0.00
40 1 0.00
41 20 0.04
42 8 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (35 bp):
CGATCGTTTTCATTTTCTGACTCGTGGTTTAATCC
Found at i:5197843 original size:106 final size:106
Alignment explanation
Indices: 5197678--5197942 Score: 245
Period size: 106 Copynumber: 2.5 Consensus size: 106
5197668 ATACGGGTCA
* * ** * * * **
5197678 TTTTCATTTTTTGACTCACAATTTAATCCCGATCA-TTTTCATTTTTTAACTCGTGATTTAATTT
1 TTTTGATTTTCTGACTCATGATTTACTCCCGAT-AGTTTTCATTTTTTGACTCGTAATTTAATAA
* * **
5197742 CGGTCATTTTTCA-TTCCCTGA-CATGTGATTTAGTTTCGG-TGG
65 CGATCA-TTTTCATTTCCCTGATCA--TGATTTAATGACGGTTGG
*
5197784 TTTTGATTTTCTGACTCATGATTTATTCCC-AGTAGTTTTCATTTTTTGACAT-GTAATTTAATA
1 TTTTGATTTTCTGACTCATGATTTACTCCCGA-TAGTTTTCATTTTTTGAC-TCGTAATTTAATA
* *
5197847 ACGATCATTTTCATTTCTCTGATTCATGATTTAATGACGGTTGT
64 ACGATCATTTTCATTTCCCTGA-TCATGATTTAATGACGGTTGG
** * *
5197891 TTTTGATTTTCTGACTTGTGATTTACTCTCGATCGTTTTCATTTTTTGACTC
1 TTTTGATTTTCTGACTCATGATTTACTCCCGATAGTTTTCATTTTTTGACTC
5197943 ACAGTTTGAT
Statistics
Matches: 130, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
105 8 0.06
106 73 0.56
107 46 0.35
108 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.13, T:0.51
Consensus pattern (106 bp):
TTTTGATTTTCTGACTCATGATTTACTCCCGATAGTTTTCATTTTTTGACTCGTAATTTAATAAC
GATCATTTTCATTTCCCTGATCATGATTTAATGACGGTTGG
Found at i:5198066 original size:105 final size:107
Alignment explanation
Indices: 5197850--5198092 Score: 250
Period size: 105 Copynumber: 2.3 Consensus size: 107
5197840 TTTAATAACG
* * *
5197850 ATCATTTTCATTTCTCTGATTCATGATTTAATGACGGTTGTTTTTGATTTTCTGACTTGTGATTT
1 ATCATTTTCATTTCTCTGACTCATGATTTAATCACGGTTGTTTTTGATTTTCTAACTTGTGATTT
* * *
5197915 ACTCTCGATCGTTTTCATTTTTTGACTCACAGTTTGATCCTG
66 AATCTCGATCGTTTTAATTTTTTGACTCACAGTTTGATCCTC
* * * *
5197957 ATCATTTTCATTT-TTTGACTCGTGGTTTAATCTCGGTTGTTTTTG-TTTTCTAACTCT-TGATT
1 ATCATTTTCATTTCTCTGACTCATGATTTAATCACGGTTGTTTTTGATTTTCTAACT-TGTGATT
* * * *
5198019 TAATTTCGGTCTTTTTAATTTTTTGACTTAC-GATTT-ATTACC-C
65 TAATCTCGATCGTTTTAATTTTTTGACTCACAG-TTTGA-T-CCTC
* *
5198062 ATCATTTT--TTTCCCTGACACATGATTTAATC
1 ATCATTTTCATTTCTCTGACTCATGATTTAATC
5198093 CAGGTCATTT
Statistics
Matches: 112, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
103 3 0.03
104 16 0.14
105 51 0.46
106 29 0.26
107 13 0.12
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.52
Consensus pattern (107 bp):
ATCATTTTCATTTCTCTGACTCATGATTTAATCACGGTTGTTTTTGATTTTCTAACTTGTGATTT
AATCTCGATCGTTTTAATTTTTTGACTCACAGTTTGATCCTC
Found at i:5198298 original size:35 final size:35
Alignment explanation
Indices: 5198226--5200053 Score: 326
Period size: 35 Copynumber: 52.5 Consensus size: 35
5198216 CTGACTTATG
* **
5198226 ATTTTCATTTTTTGACTCGT-GTCTTTTTCTC-AGTC
1 ATTTTCATTTTTTGACTCATGGT-TTAATCTCGA-TC
* **
5198261 ATTTTCATTTTCTGACTCATAATTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5198296 ATTTTTATTTTTTGACCCATGGTTTAATCTTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * ** * *
5198331 GTTTTTCTTTTTTTGACTGGTGGTTTAATC-CTGGTT
1 -ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * *
5198367 GTTTTCATTTTTTGACTTTTGGTTTAATCTGGCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * ** *
5198402 ATTTTCATTTTCTGACTCATGGCTTAATCGGGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5198437 ATTTTCATTTTTTGACTCATGGTTTAATCATAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * *
5198472 ATTTTCATTTTTTGACCCGTGGTCTAATCAT-GGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * *
5198507 GTTTTTCATTTTTTGATTTATGGTATAATC-C-CT-
1 -ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** * * *
5198540 ATTTT--TTTTTGTGGGT-A--GTTTAATCCCAACC
1 ATTTTCATTTTT-TGACTCATGGTTTAATCTCGATC
* * * ** *
5198571 GTTTTTATTTTCTGACTTGTGGTTTAATC-CTGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * * ** * * *
5198606 GTTTTCATTTTCTAATTTGTGGTTTAATCTGGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5198641 ATTTTCATTTTTTGACTAATGGTTTAATCCCCG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAAT-CTCGATC
* * ** ** * *
5198676 ATTTTGATTATCCGACTCGCGGTTTAATCACGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
**
5198711 ATTTTCATTTTTTTGACTTGTGGTTTAATCTCGATC
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5198747 GTTCTTTATTTTTTGAATCATGTTTTAATCAT-GAT-
1 ATT-TTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * *
5198782 AGTTTTCATTTATTGACTCGTGATTTGAA-CCCGATC
1 A-TTTTCATTTTTTGACTCATGGTTT-AATCTCGATC
*** * * *
5198818 GCATTCATTTTTTGACTCATGATTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5198853 ATTTT--TCTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5198877 GTTTTCATTTTCTAACTCATAGCTTAAT-TCTAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* *
5198912 ATTTTCATTTTATGACTCATGGTTTAATC-CTGTTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * *
5198947 ATTTTTCTTTTTTTGAC-CAGTGGTTTAAACAT-GGTC
1 A-TTTTCATTTTTTGACTCA-TGGTTTAATC-TCGATC
* * * *
5198983 ATTTCCATTTTCTGACTCATTGTTTAATCT-TAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * * *
5199018 GTTTCCATTTTCTGGCTCGTGCTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5199053 CTTTTC-TTTTTCTGACTCAAT-GTTTAATCGC-ACTT
1 ATTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA-TC
* ** * *
5199088 GTTTTCATTTCCTGACTCGTGGTTTAATC-C-ATGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA--TC
* * ** *
5199123 ATTTTTCATTTTTTAACTCGTACTTTAATC-CCAGTC
1 A-TTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * *
5199159 ATTTTCATTTCTTGACTCATGATTCAAACTAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5199193 GTATTCATTTTCTAACTCGTGGTTTAGTC-CTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* *
5199228 ATTTTTTTTCATTTTTTGATCGTTTTCAT-TTTCTAA-CTCG-TG
1 A----TTTTCATTTTTTGA-C----TCATGGTT-TAATCTCGATC
5199270 ATTTAATCCCAATCATTTTCATTTTCTGACTCAAT-GTTTAATCTC-AGTC
1 A-TT--T-----TCA---T--TTTT-TGACTC-ATGGTTTAATCTCGA-TC
* * * *
5199319 GTTTTC-TTTTTTCTAGCT-AGTGGTTTAATTTCGGTC
1 ATTTTCATTTTTT-GA-CTCA-TGGTTTAATCTCGATC
* *
5199355 ATTTTCATTTTTTGACTCGTGGTTTAATC-CTTATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * *
5199390 GTTTTCATTTTTTGACTTGTGATTTAATC-CTGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* *
5199425 ATTTT--TTATTTCTGACTCGTGATTTAATCTC-AGTC
1 ATTTTCATT-TTT-TGACTCATGGTTTAATCTCGA-TC
* * * * *
5199460 GTTGTCATTTCTTGACTCATGATTTAATCTCGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * ** *
5199495 GTTTTCATTTTTTAACTCGTACTTTAATC-CCAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * * *
5199530 ATTTTCATTTCTTGACTCATGATTCAAACTAG-TT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * * *
5199564 GTATTCATTTTCTAACTCGTGGTTTAGTCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
5199599 A-TTT--TTTTTT---TC-T--TTT--T-TCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5199622 GTTTTCATTTTCTGACTCGTGATTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5199657 GTTTTCATTTTCTGACTCAAT-GTTTAATCTC-AGTC
1 ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGA-TC
* *
5199692 ATTTTCCTTTTTCT-AGCT-AGTGGTTTAATCCCGATC
1 ATTTTCATTTTT-TGA-CTCA-TGGTTTAATCTCGATC
* * * *
5199728 -TTTTCCTTTTTTAACTCGA-GATTTAATTTCGATC
1 ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
** * * * *
5199762 ATTTTTC-TTTCCCTGA--CATGTGATTTAGTTTCGGTG
1 A-TTTTCATTT-TTTGACTCATG-G-TTTAATCTCGATC
* * * * *
5199798 GTTTTGATTTTCTGACTCATGAG-TTATTCTCAAT-
1 ATTTTCATTTTTTGACTCATG-GTTTAATCTCGATC
** * * *
5199832 AGTTTTCATTTTTTGACATGTTGATTTAATATTGATC
1 A-TTTTCATTTTTTGAC-TCATGGTTTAATCTCGATC
* * * * * **
5199869 AATTTCATTCTCTAACTCATGATTTAATGACG-T-
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * **
5199902 GTTTTCATTTTCTGACT-GT-CATTAATCGATCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATC--TCGATC
* * *
5199937 GTTTTCATTTGTTGACTCACGGTTTAATC-CTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * *
5199972 ATTTTAATTTTTGGACTCGT-GTTTAATC-CGGT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5200004 -TGTTT-GTTTTCTGACTCATGATTTAATTTCGATC
1 AT-TTTCATTTTTTGACTCATGGTTTAATCTCGATC
5200038 -TTTTCATTTTTTGACT
1 ATTTTCATTTTTTGACT
5200054 TACGATTTAC
Statistics
Matches: 1303, Mismatches: 336, Indels: 309
0.67 0.17 0.16
Matches are distributed among these distances:
23 5 0.00
24 11 0.01
26 13 0.01
28 11 0.01
29 9 0.01
30 11 0.01
31 25 0.02
32 25 0.02
33 37 0.03
34 113 0.09
35 717 0.55
36 241 0.18
37 27 0.02
39 14 0.01
40 1 0.00
41 3 0.00
42 2 0.00
43 4 0.00
44 6 0.00
46 4 0.00
47 5 0.00
48 9 0.01
49 2 0.00
51 5 0.00
52 3 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5198409 original size:141 final size:141
Alignment explanation
Indices: 5198259--5198536 Score: 355
Period size: 141 Copynumber: 2.0 Consensus size: 141
5198249 TTTTTCTCAG
* * *
5198259 TCATTTTCATTTTCTGACTCATAATTTAATCTCGATCATTTTTATTTTTTGACCCATGGTTTAAT
1 TCATTTTCATTTTCTGACTCATAACTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
* * * ** * * *
5198324 C-TTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG-TTTTCATTTTTTGACTTT-
66 CATAG-TC-ATTTTCATTTTTTGACCCGTGGTCTAATCATGGTCGTTTTTCATTTTTTGA-TTTA
*
5198386 TGGTTTAATCTGGC
128 TGGTATAATCTGGC
** * * *
5198400 TCATTTTCATTTTCTGACTCATGGCTTAATCGGGATTATTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTCTGACTCATAACTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
5198465 CATAGTCATTTTCATTTTTTGACCCGTGGTCTAATCATGGTCGTTTTTCATTTTTTGATTTATGG
66 CATAGTCATTTTCATTTTTTGACCCGTGGTCTAATCATGGTCGTTTTTCATTTTTTGATTTATGG
5198530 TATAATC
131 TATAATC
5198537 CCTATTTTTT
Statistics
Matches: 117, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
140 32 0.27
141 83 0.71
142 2 0.02
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (141 bp):
TCATTTTCATTTTCTGACTCATAACTTAATCGCGATCATTTTCATTTTTTGACCCATGGTTTAAT
CATAGTCATTTTCATTTTTTGACCCGTGGTCTAATCATGGTCGTTTTTCATTTTTTGATTTATGG
TATAATCTGGC
Found at i:5198725 original size:204 final size:204
Alignment explanation
Indices: 5198367--5198740 Score: 475
Period size: 204 Copynumber: 1.8 Consensus size: 204
5198357 AATCCTGGTT
* * *
5198367 GTTTTCATTTTTTGACTTTTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCG
1 GTTTTCATTTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTAACTCATGGCTTAATCG
* * * ** *
5198432 GGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACCCGTGGTCT
66 GGATTATTTTCATTTTTTGACTAATGGTTTAATCACAGTCATTTTCATTATCCGACCCGCGGTCT
* * *
5198497 AATCATGGTCGTTTTTCATTTTTTGATTTATGGTATAATCCCTATTTTTTTTTGTGGGTAGTTTA
131 AATCACGGTCGATTTTCATTTTTTGACTTATGGTATAATCCCTATTTTTTTTTGTGGGTAGTTTA
5198562 ATCCCAACC
196 ATCCCAACC
* * * ** *
5198571 GTTTTTATTTTCTGACTTGTGGTTTAATCCTGG-TCGTTTTCATTTTCTAATTTGTGGTTTAATC
1 GTTTTCATTTTCTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTCTAACTCATGGCTTAATC
* * * *
5198635 TGGG-TTATTTTCATTTTTTGACTAATGGTTTAATCCCCGTCATTTTGATTATCCGACTCGCGGT
65 -GGGATTATTTTCATTTTTTGACTAATGGTTTAATCACAGTCATTTTCATTATCCGACCCGCGGT
* * *
5198699 TTAATCACGGTC-ATTTTCATTTTTTTGACTTGTGGTTTAATC
129 CTAATCACGGTCGATTTTCA-TTTTTTGACTTATGGTATAATC
5198741 TCGATCGTTC
Statistics
Matches: 142, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
203 6 0.04
204 129 0.91
205 7 0.05
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (204 bp):
GTTTTCATTTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTAACTCATGGCTTAATCG
GGATTATTTTCATTTTTTGACTAATGGTTTAATCACAGTCATTTTCATTATCCGACCCGCGGTCT
AATCACGGTCGATTTTCATTTTTTGACTTATGGTATAATCCCTATTTTTTTTTGTGGGTAGTTTA
ATCCCAACC
Found at i:5198985 original size:36 final size:36
Alignment explanation
Indices: 5198909--5199009 Score: 100
Period size: 36 Copynumber: 2.9 Consensus size: 36
5198899 CTTAATTCTA
* *
5198909 GTCA-TTTTCATTTTATGACTCATGGTTTAATCCTG
1 GTCATTTTTCATTTTATGACTCATGGTTTAAACATG
* * *
5198944 TTCATTTTTCTTTTTTTGAC-CAGTGGTTTAAACATG
1 GTCATTTTTCATTTTATGACTCA-TGGTTTAAACATG
* * *
5198980 GTCA-TTTCCATTTTCTGACTCATTGTTTAA
1 GTCATTTTTCATTTTATGACTCATGGTTTAA
5199010 TCTTAGTCGT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
35 24 0.45
36 29 0.55
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (36 bp):
GTCATTTTTCATTTTATGACTCATGGTTTAAACATG
Found at i:5200239 original size:21 final size:21
Alignment explanation
Indices: 5200215--5200255 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5200205 CTCATTTTCC
*
5200215 TTTTCTGACTTATGATTTTTA
1 TTTTCTGACTCATGATTTTTA
* *
5200236 TTTTTTGACTCGTGATTTTT
1 TTTTCTGACTCATGATTTTT
5200256 TCTCAGTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.10, G:0.12, T:0.63
Consensus pattern (21 bp):
TTTTCTGACTCATGATTTTTA
Found at i:5200301 original size:35 final size:35
Alignment explanation
Indices: 5200229--5202055 Score: 500
Period size: 35 Copynumber: 52.8 Consensus size: 35
5200219 CTGACTTATG
* * * **
5200229 ATTTTTATTTTTTGACTCGTGATTTTTTCTC-AGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
*
5200264 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5200299 ATTTTTCA-TTTTTGTCCCATGGTTTAATC-CTGATC
1 A-TTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * ** * *
5200334 GTTTTTCTTTTTTTGACTGGTGGTTTAATC-CTAGTT
1 -ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
** * * *
5200370 ATTTTCATTTTTTGACTTGTGGTTTAATTTGGCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5200405 ATTTTCATTTTTTGACTCATGGTTTAATCATAG-TA
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * *
5200440 ATTTTCATTTTTTGACCCGTGGTCTAATCAT-GGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * * *
5200475 GCTTTTCATTTTTGGACTCGTGGTTTAATCCCTACC
1 -ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** * *
5200511 A-----ATTTTTATGGGT-A--GTTTAATCCCAATC
1 ATTTTCATTTTT-TGACTCATGGTTTAATCTCGATC
* ** *
5200539 GTTTTCATTTTTTGACTTGTGGTTTAATC-CTGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * * *
5200574 ATTTTCATTTTCTGACTTGTGGTTTCATCTAG-GC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5200608 TATTTTCATCTTTTGACT-ATTGGTTTAATCCCCATC
1 -ATTTTCATTTTTTGACTCA-TGGTTTAATCTCGATC
* * ** ** * *
5200644 GTTTTCATTATCCGACTCGCGGTTTAATCGCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
** *
5200679 ATTTTCATTTTTTTGACTTGTGGTTTAATCTC-AGTT
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGA-TC
* * * *
5200715 GTTCTTCATTTTTTGAATCGTGTTTTAATCAT-GATC
1 ATT-TTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * * * *
5200751 CTTTTCATTTCTTGACTCGTGATTTGAA-CCCGATTGC
1 ATTTTCATTTTTTGACTCATGGTTT-AATCTCGA-T-C
* * * *
5200788 A--TTCATTTTCTAACTCATGGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5200821 ATTTT--TCTTTT---TCAT--TTT--T-T-GATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * * *
5200845 GTTTTCATTTTCTAACTCGTAGCTTAAT-TCCACTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
*
5200880 ATTTTCATTTTTTGACTCATGATTTAATC-CTG-TAC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GAT-C
* * * * *
5200915 ATTTTTCTTTTTTTGA-TCGGTGGTTTAAACGCGGTC
1 A-TTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* * * * * *
5200951 ATTTCCATTTTCTGACACGTTGTTTAATCT-TAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * * *
5200986 GTTTTCATTTTCTGGCTCGA-GCTTTAATCTAGGTC
1 ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* *
5201021 ATTTTC-TTTTTCTGACTCAAT-GTTTAATC-CCACTT
1 ATTTTCATTTTT-TGACTC-ATGGTTTAATCTCGA-TC
* * * * * * *
5201056 GTTTTCGTTTTCTGACACGTGGTTTAATC-CAGGTTG
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC--GATC
* * * **
5201092 TTTTTCATTTTTTAACTCGTACTTTAATCTC-AGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * * * *
5201127 ATTTTCATTTCTTGACTCATGATTCAAACTAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
**** * * ** * * *
5201161 GCACTCATTTTCTAACTCGCGGTTTAGTCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*
5201196 A--TT--TTTTTT---TCAT--TTT--T-T-AATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5201218 GTTTTCATTTTTTGACTCGTGGTTTAATC-CCACTTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA--TC
* *
5201254 -TTTTCATTTTTTGACTCATGGTTTAATCCCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5201288 GTTTTCACTTTCTGACTCAAT-GTTTAATCTCGGTC
1 ATTTTCATTTTTTGACTC-ATGGTTTAATCTCGATC
* * *
5201323 GTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTCGGTC
1 ATTTTCATTTTT-TGA-CTCA-TGGTTTAATCTCGATC
* *
5201359 ATTTTCATTTTTTGACTCGTGGTTTAATC-CTTATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * * *
5201394 GTTTTCAATTTTTGACT-AGTGATTTAATACT-GGTC
1 ATTTTCATTTTTTGACTCA-TGGTTTAAT-CTCGATC
* *
5201429 ATTTT--TTATTTCTGACTCGTGATTTAATCTC-AGTC
1 ATTTTCATT-TTT-TGACTCATGGTTTAATCTCGA-TC
* * * * *
5201464 GTTGTCATTTCTTGACTCATGATTTAATCTCGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * * * *
5201499 GTTTCCATTTCTTAACTCGTGATTTAAACCCGATTGC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-T-C
* * * *
5201536 A--TTCATTTTTTTGACTCGTGATTTAATCAT-GGTT
1 ATTTTCA-TTTTTTGACTCATGGTTTAATC-TCGATC
* * *
5201570 GTTTACATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * **
5201605 GTTTTCATTTTGTGACTCGGGGTTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * * * * * * *
5201640 TTTTTTGTTTTCTAACTCGTAGTTTAATATGGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** *
5201675 ATTTTTATTTTTTGACTCACAGTTTAATCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5201710 ATTTTCATTTTTTAACTCGTGATTTAATTTCGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
*** * * * *
5201745 ATTTTTCATTCCCTGA--CATGTGATTTAGTTTCGGTG
1 A-TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATC
* * * *
5201781 GTTTTGATTTTTTGACTCATGATTTATTCTC-AGT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
*
5201815 AGTTTTCATTTTTTGA--CATGTGATTTAATATCGATC
1 A-TTTTCATTTTTTGACTCATG-G-TTTAATCTCGATC
* * * * ** *
5201851 ATTATCCTTTCTCTGACTCATGATTTAATAACGATTG
1 ATTTTCATTT-TTTGACTCATGGTTTAATCTCGA-TC
* * ** *
5201888 TTTTTCATTTTCTGACTTGTGATTTAATCTCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5201923 GTTTTCATTTTTTGACTCACGGTTTAATCTTGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* *
5201958 ATTTTCATTTTTTGACTCGTGGTTTAATCTCGATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * * **
5201993 GTTTTTGTTTTTTGACACATGATTTAAT-TTTAGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGA-TC
* * *
5202028 TTTTTCATTTTTTGACTTACGGTTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAAT
5202056 TCCCATTGCT
Statistics
Matches: 1309, Mismatches: 353, Indels: 260
0.68 0.18 0.14
Matches are distributed among these distances:
22 4 0.00
24 10 0.01
26 14 0.01
28 17 0.01
29 6 0.00
30 10 0.01
31 12 0.01
32 3 0.00
33 21 0.02
34 48 0.04
35 865 0.66
36 271 0.21
37 24 0.02
38 4 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5200383 original size:141 final size:141
Alignment explanation
Indices: 5200229--5200505 Score: 337
Period size: 141 Copynumber: 2.0 Consensus size: 141
5200219 CTGACTTATG
* *
5200229 ATTTTTATTTTTTGACTCGTGATTT-TTTCTCAG-TCATTTTCATTTTTTGACTCATAGTTTAAT
1 ATTTTCATTTTTTGACTCGTGATTTAATT-T-AGCTCATTTTCATTTTTTGACTCATAGTTTAAT
* * * * * * * * *
5200292 C-TCGATCATTTTTCA-TTTTTGTCCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGT
64 CATAG-T-AATTTTCATTTTTTGACCCATGGTCTAATCATGATCGCTTTTCATTTTTGGACTCGT
5200355 GGTTTAATCCTAGTT
127 GGTTTAATCCTAGTT
* * * *
5200370 ATTTTCATTTTTTGACTTGTGGTTTAATTTGGCTCATTTTCATTTTTTGACTCATGGTTTAATCA
1 ATTTTCATTTTTTGACTCGTGATTTAATTTAGCTCATTTTCATTTTTTGACTCATAGTTTAATCA
* *
5200435 TAGTAATTTTCATTTTTTGACCCGTGGTCTAATCATGGTCGCTTTTCATTTTTGGACTCGTGGTT
66 TAGTAATTTTCATTTTTTGACCCATGGTCTAATCATGATCGCTTTTCATTTTTGGACTCGTGGTT
5200500 TAATCC
131 TAATCC
5200506 CTACCAATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
140 8 0.07
141 103 0.90
142 4 0.03
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (141 bp):
ATTTTCATTTTTTGACTCGTGATTTAATTTAGCTCATTTTCATTTTTTGACTCATAGTTTAATCA
TAGTAATTTTCATTTTTTGACCCATGGTCTAATCATGATCGCTTTTCATTTTTGGACTCGTGGTT
TAATCCTAGTT
Found at i:5200451 original size:106 final size:105
Alignment explanation
Indices: 5200260--5200504 Score: 248
Period size: 106 Copynumber: 2.3 Consensus size: 105
5200250 ATTTTTTCTC
* * *
5200260 AGTC-ATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTTCATTTTTGTCCCATGGTTT
1 AGTCGATTTTCATTTTTTGACTCGTGGTTTAATCTCGATCATTTTTCATTTTTGACCCATGGTTT
* ** * *
5200324 AATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCT
66 AATCC-GATAGTTTTTC-TTTTTTGACCCGTGGTCTAATCAT
* * * * * *
5200366 AGT-TATTTTCATTTTTTGACTTGTGGTTTAATTTGGCTCA-TTTTCATTTTTTGACTCATGGTT
1 AGTCGATTTTCATTTTTTGACTCGTGGTTTAATCTCGATCATTTTTCA-TTTTTGACCCATGGTT
5200429 TAAT-C-ATAGTAATTTTCATTTTTTGACCCGTGGTCTAATCAT
65 TAATCCGATAGT--TTTTC-TTTTTTGACCCGTGGTCTAATCAT
* * *
5200471 GGTCGCTTTTCATTTTTGGACTCGTGGTTTAATC
1 AGTCGATTTTCATTTTTTGACTCGTGGTTTAATC
5200505 CCTACCAATT
Statistics
Matches: 114, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
103 4 0.04
105 34 0.30
106 76 0.67
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (105 bp):
AGTCGATTTTCATTTTTTGACTCGTGGTTTAATCTCGATCATTTTTCATTTTTGACCCATGGTTT
AATCCGATAGTTTTTCTTTTTTGACCCGTGGTCTAATCAT
Found at i:5200704 original size:204 final size:205
Alignment explanation
Indices: 5200320--5200708 Score: 482
Period size: 204 Copynumber: 1.9 Consensus size: 205
5200310 TTGTCCCATG
** * * *
5200320 GTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTTATTTTCATTTTTTGA
1 GTTTAATCCCAATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTAGTCATTTTCATTTTCTGA
* * * *
5200385 CTTGTGGTTTAATTTGGCTCATTTTCATTTTTTGACTCATGGTTTAATCATAGTAATTTTCATTT
66 CTTGTGGTTTAATTAGGCTCATTTTCATCTTTTGACTCATGGTTTAATCACAGTAATTTTCATTA
** * * *
5200450 TTTGACCCGTGGTCTAATCATGGTCGCTTTTCATTTTTGGACTCGTGGTTTAATCCCTACCAATT
131 TCCGACCCGCGGTCTAATCACGGTCGATTTTCATTTTTGGACTCGTGGTTTAATCCCTACCAATT
5200515 TTTATGGGTA
196 TTTATGGGTA
* *
5200525 GTTTAATCCCAATCG-TTTTCATTTTTTGACTTGTGGTTTAATCCTGGTCATTTTCATTTTCTGA
1 GTTTAATCCCAATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTAGTCATTTTCATTTTCTGA
* * **
5200589 CTTGTGGTTTCATCTAGGCT-ATTTTCATCTTTTGACT-ATTGGTTTAATCCCCA-TCGTTTTCA
66 CTTGTGGTTTAAT-TAGGCTCATTTTCATCTTTTGACTCA-TGGTTTAAT-CACAGTAATTTTCA
* * * * *
5200651 TTATCCGACTCGCGGTTTAATCGCGGTC-ATTTTCATTTTTTTGACTTGTGGTTTAATC
128 TTATCCGACCCGCGGTCTAATCACGGTCGATTTTCA-TTTTTGGACTCGTGGTTTAATC
5200709 TCAGTTGTTC
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
203 7 0.05
204 128 0.83
205 20 0.13
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.50
Consensus pattern (205 bp):
GTTTAATCCCAATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTAGTCATTTTCATTTTCTGA
CTTGTGGTTTAATTAGGCTCATTTTCATCTTTTGACTCATGGTTTAATCACAGTAATTTTCATTA
TCCGACCCGCGGTCTAATCACGGTCGATTTTCATTTTTGGACTCGTGGTTTAATCCCTACCAATT
TTTATGGGTA
Found at i:5202172 original size:35 final size:35
Alignment explanation
Indices: 5201218--5202178 Score: 458
Period size: 35 Copynumber: 27.3 Consensus size: 35
5201208 TTTTTTAATC
* *
5201218 GTTTTCATTTTTTGACTCGTGGTTTAATC-CCACTT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-TT
* * * * * *
5201253 CTTTTCATTTTTTGACTCATGGTTTAATCCCAATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * * * *
5201288 GTTTTCACTTTCTGACTCAATG-TTTAATCTCGGTC
1 GTTTTCATTTTTTGACTC-GTGATTTAATCTCGATT
* * * * *
5201323 GTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGGTC
1 GTTTTCATTTTT-TGA-CTCGTGATTTAATCTCGATT
* * * *
5201359 ATTTTCATTTTTTGACTCGTGGTTTAATC-CTTATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTC-GATT
* * *
5201394 GTTTTCAATTTTTGACTAGTGATTTAATACTGGTCATT
1 GTTTTCATTTTTTGACTCGTGATTTAAT-CTCG--ATT
* *
5201432 -TTTT-A-TTTCTGACTCGTGATTTAATCTC-AGTC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-TT
* * *
5201464 GTTGTCATTTCTTGACTCATGATTTAATCTCGATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* * * * *
5201499 GTTTCCATTTCTTAACTCGTGATTTAAACCCGATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
** *
5201534 GCATTCATTTTTTTGACTCGTGATTTAATCAT-GGTT
1 GTTTTCA-TTTTTTGACTCGTGATTTAATC-TCGATT
* * *
5201570 GTTTACATTTTTTGACTCAT-AGTTTAATCTCGATC
1 GTTTTCATTTTTTGACTCGTGA-TTTAATCTCGATT
* * *
5201605 GTTTTCATTTTGTGACTCGGGGTTTAATCTCGATCT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGAT-T
** * * * * * *
5201641 -TTTTTGTTTTCTAACTCGT-AGTTTAATATGGGTC
1 GTTTTCATTTTTTGACTCGTGA-TTTAATCTCGATT
* * ** * *
5201675 ATTTTTATTTTTTGACTC-ACAGTTTAATCCCGATC
1 GTTTTCATTTTTTGACTCGTGA-TTTAATCTCGATT
* * * *
5201710 ATTTTCATTTTTTAACTCGTGATTTAATTTCGGTCAT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGAT--T
*** * * * *
5201747 -TTTTCATTCCCTGACAT-GTGATTTAGTTTCGGTG
1 GTTTTCATTTTTTGAC-TCGTGATTTAATCTCGATT
* * * *
5201781 GTTTTGATTTTTTGACTCATGATTTATTCTC-AGTA
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-TT
* *
5201816 GTTTTCATTTTTTGACAT-GTGATTTAATATCGATC
1 GTTTTCATTTTTTGAC-TCGTGATTTAATCTCGATT
* * * * * **
5201851 ATTATCCTTTCTCTGACTCATGATTTAATAACGATT
1 GTTTTCATTT-TTTGACTCGTGATTTAATCTCGATT
* * *
5201887 GTTTTTCATTTTCTGACTTGTGATTTAATCTCGATC
1 G-TTTTCATTTTTTGACTCGTGATTTAATCTCGATT
** * * *
5201923 GTTTTCATTTTTTGACTCACGGTTTAATCTTGATC
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
* *
5201958 ATTTTCATTTTTTGACTCGTGGTTTAATCTCGATT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
** * * **
5201993 GTTTTTGTTTTTTGACACATGATTTAAT-TTTAGTCT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGA-T-T
*
5202029 -TTTTCATTTTTTGACTTACG-G-TTTAAT-TCCCATT
1 GTTTTCATTTTTTGAC-T-CGTGATTTAATCT-CGATT
*** * * *
5202063 GCTTTT-ATTCCCTGACTCATGATTTAATC-CTAGTC
1 G-TTTTCATTTTTTGACTCGTGATTTAATCTCGA-TT
* * * * *
5202098 ATTTTCATTTTTTTGATTCGTGTTTTAATCCTTGTTT
1 GTTTTCA-TTTTTTGACTCGTGATTTAAT-CTCGATT
* * *
5202135 GTTTTCATTTTTTGACTCGTGATTTAATTTTGGTT
1 GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
5202170 GTTTTCATT
1 GTTTTCATT
5202179 ATCTAAGACA
Statistics
Matches: 704, Mismatches: 170, Indels: 104
0.72 0.17 0.11
Matches are distributed among these distances:
31 1 0.00
32 1 0.00
33 4 0.01
34 18 0.03
35 486 0.69
36 171 0.24
37 21 0.03
38 2 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (35 bp):
GTTTTCATTTTTTGACTCGTGATTTAATCTCGATT
Found at i:5202412 original size:106 final size:103
Alignment explanation
Indices: 5202262--5202692 Score: 311
Period size: 106 Copynumber: 4.2 Consensus size: 103
5202252 TTCTCAATCA
* * * ** * * *
5202262 TTTTTATTTTTTGACTTATAGTTTAATCTCTATTATTTTCATTTTCTGACCCATGGTTTAATCCT
1 TTTTCATTTTTTGACTTGTGGTTTAATCT-GGTCATTTTCATTTTCTGACTCATGGTTTAATTCT
* * *
5202327 GATTGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
65 GA-T-TTTTTCTTTTTTTGACTGATAGTTTAATCCTGGTCG
* * * *
5202368 TTTTTATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTT-TCGACTGATGGCTTAATTG
1 TTTTCATTTTTTGACTTGTGGTTTAATCTGG-TCATTTTCATTTTCT-GACTCATGGTTTAATTC
* * * * * * * *
5202432 GGAATATTTTCATTTTTTAACTCATAGTTTAATCATAGTCA
64 TG-ATTTTTTCTTTTTTTGACTGATAGTTTAATCCTGGTCG
* * * * * * *
5202473 TTTTCATTTTTTGACCTGTGCTCTAATAATGGTCGTTTTTCATTTTTTGACTCGTGGTTTAATTC
1 TTTTCATTTTTTGACTTGTGGTTTAAT-CTGGTC-ATTTTCATTTTCTGACTCATGGTTTAATTC
* ** * * * *
5202538 TTATCCTTT-TTTTTATG---GGTAGTTTAATCCCGATCG
64 TGATTTTTTCTTTTTTTGACTGATAGTTTAATCCTGGTCG
* * *
5202574 TTTTCATTTTTTGACTTGTGGTTTAATTTGGTCGTTTTCATTTTCTGACTTATGGTTTAA-TCTG
1 TTTTCATTTTTTGACTTGTGGTTTAATCTGGTCATTTTCATTTTCTGACTCATGGTTTAATTCT-
* * * *
5202638 GGTTGTTTTC-ATTTTTGACTAATGGTTTAATCCCT-GTCG
65 GATT-TTTTCTTTTTTTGACTGATAGTTTAAT-CCTGGTCG
5202677 TTTTCATTTTTTGACT
1 TTTTCATTTTTTGACT
5202693 CGCGATTTAA
Statistics
Matches: 248, Mismatches: 64, Indels: 29
0.73 0.19 0.09
Matches are distributed among these distances:
98 3 0.01
99 24 0.10
100 13 0.05
101 36 0.15
103 27 0.11
104 7 0.03
105 57 0.23
106 79 0.32
107 2 0.01
ACGTcount: A:0.17, C:0.13, G:0.15, T:0.54
Consensus pattern (103 bp):
TTTTCATTTTTTGACTTGTGGTTTAATCTGGTCATTTTCATTTTCTGACTCATGGTTTAATTCTG
ATTTTTTCTTTTTTTGACTGATAGTTTAATCCTGGTCG
Found at i:5202429 original size:141 final size:140
Alignment explanation
Indices: 5202227--5202535 Score: 307
Period size: 141 Copynumber: 2.2 Consensus size: 140
5202217 TGACTTATGA
* ** * * * *
5202227 TTTTCATTTTTTGACTCGTGGTTTTTTCTCAATCATTTTTATTTTTTGACTTATAGTTTAATCT-
1 TTTTTATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTTCGACTGATAGCTTAAT-TG
* * * * * * ** * *
5202291 CTATTATTTTCATTTTCTGACCCATGGTTTAATCCTGATTGTTTTTCTTTTTTTGA-CTGGTGGT
65 CGAATATTTTCATTTTCTAACCCATAGTTTAATCAT-AGTCATTTTCATTTTTTGACCT-GTGCT
* ** *
5202355 TTAATCCTGGTTG
128 CTAATAATGGTCG
* *** * *
5202368 TTTTTATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTCGACTGATGGCTTAATTGG
1 TTTTTATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTTCGACTGATAGCTTAATTGC
* *
5202433 GAATATTTTCATTTTTTAACTCATAGTTTAATCATAGTCATTTTCATTTTTTGACCTGTGCTCTA
66 GAATATTTTCATTTTCTAACCCATAGTTTAATCATAGTCATTTTCATTTTTTGACCTGTGCTCTA
5202498 ATAATGGTCG
131 ATAATGGTCG
5202508 TTTTTCATTTTTTGACTCGTGGTTTAAT
1 TTTTT-ATTTTTTGACTCGTGGTTTAAT
5202536 TCTTATCCTT
Statistics
Matches: 135, Mismatches: 30, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
140 34 0.25
141 101 0.75
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.54
Consensus pattern (140 bp):
TTTTTATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTTCGACTGATAGCTTAATTGC
GAATATTTTCATTTTCTAACCCATAGTTTAATCATAGTCATTTTCATTTTTTGACCTGTGCTCTA
ATAATGGTCG
Found at i:5202677 original size:69 final size:69
Alignment explanation
Indices: 5202227--5202776 Score: 255
Period size: 71 Copynumber: 7.9 Consensus size: 69
5202217 TGACTTATGA
* ** ** * * * *
5202227 TTTTCATTTTTTGACTCGTGGTTTTTTCTCAATCATTTTTATTTTTTGACTTAT-AGTTTAATCT
1 TTTTCATTTTTTGACTTGTGGTTTAATC-CTGTCGTTTTCATTTTTTGACTCATGA-TTTAATCG
** *
5202291 CTATTA
64 CGGTTG
* *** * * ** *
5202297 TTTTCATTTTCTGACCCATGGTTTAATCCTGATTGTTTTTCTTTTTTTGACTGGTGGTTTAATC-
1 TTTTCATTTTTTGACTTGTGGTTTAATCCTG-TCG-TTTTCATTTTTTGACTCATGATTTAATCG
5202361 CTGGTTG
64 C-GGTTG
* * * * ** *
5202368 TTTTTATTTTTTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTCGACTGATGGCTTAATTG
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-G-TCGTTTTCATTTTTTGACTCATGATTTAATCG
* *
5202432 -GGAATA
64 CGG-TTG
* ** * * * * * * **
5202438 TTTTCATTTTTTAACTCATAGTTTAATCATAGTCATTTTCATTTTTTGAC-CTGTGCTCTAATAA
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-GTCGTTTTCATTTTTTGACTC-ATGATTTAATCG
* *
5202502 TGGTCG
64 CGGTTG
* * * * * ** *
5202508 TTTTTCATTTTTTGACTCGTGGTTTAATTCTTATCCTTTT--TTTTATGGGT-A-G-TTTAATCC
1 -TTTTCATTTTTTGACTTGTGGTTTAA-TCCTGTCGTTTTCATTTTTTGACTCATGATTTAATCG
* *
5202568 CGATCG
64 CGGTTG
* * * *
5202574 TTTTCATTTTTTGACTTGTGGTTTAAT-TTGGTCGTTTTCATTTTCTGACTTATGGTTTAATCTG
1 TTTTCATTTTTTGACTTGTGGTTTAATCCT-GTCGTTTTCATTTTTTGACTCATGATTTAATC-G
5202638 -GGTTG
64 CGGTTG
** **
5202643 TTTTCA-TTTTTGACTAATGGTTTAATCCCTGTCGTTTTCATTTTTTGACTCGCGATTTAATCGC
1 TTTTCATTTTTTGACTTGTGGTTTAAT-CCTGTCGTTTTCATTTTTTGACTCATGATTTAATCGC
*
5202707 GGTTA
65 GGTTG
* *
5202712 TTTTTATTTTTTTGACTTGTGGTTTAAT-CTCGATCGTTCTTCATTTTTTGACTCATGTTTTAAT
1 TTTTCA-TTTTTTGACTTGTGGTTTAATCCT-G-TCGTT-TTCATTTTTTGACTCATGATTTAAT
5202776 C
62 C
5202777 ACGATCATTT
Statistics
Matches: 363, Mismatches: 89, Indels: 54
0.72 0.18 0.11
Matches are distributed among these distances:
63 2 0.01
64 7 0.02
65 25 0.07
66 16 0.04
67 2 0.01
68 20 0.06
69 63 0.17
70 98 0.27
71 104 0.29
72 26 0.07
ACGTcount: A:0.17, C:0.14, G:0.15, T:0.54
Consensus pattern (69 bp):
TTTTCATTTTTTGACTTGTGGTTTAATCCTGTCGTTTTCATTTTTTGACTCATGATTTAATCGCG
GTTG
Found at i:5202725 original size:240 final size:241
Alignment explanation
Indices: 5202317--5202775 Score: 516
Period size: 240 Copynumber: 1.9 Consensus size: 241
5202307 CTGACCCATG
* * * * * *
5202317 GTTTAATCCTGATTGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTTATTTTTTGA
1 GTTTAATCCCGATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTGGTCGTTTTCATTTTCTGA
* * **
5202382 CTTGTGGTTTAATCTGGCTCATTTTCATTTTTCGACTGATGGCTTAATTGGGAATATTTTCATTT
66 CTTATGGTTTAATCTGGCTCATTTTCATTTTTCGACTAATGGCTTAATCCGG-ATATTTTCATTT
* * * *
5202447 TTTAACTCATAGTTTAATCATAGTCATTTTCATTTTTTGACCTGTGCTCTAATAAT-GGTCGTTT
130 TTTAACTCAGAGTTTAATCACAGTCATTTTCATTTTTTGACCTGTGCTCTAAT-ATCGATCGTTC
*
5202511 TTCATTTTTTGACTCGTGGTTTAATTCTTATCCTTTTTTTTATGGGTA
194 TTCATTTTTTGACTCATGGTTTAATTCTTATCCTTTTTTTTATGGGTA
* *
5202559 GTTTAATCCCGATCG-TTTTCATTTTTTGACTTGTGGTTTAAT-TTGGTCGTTTTCATTTTCTGA
1 GTTTAATCCCGATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTGGTCGTTTTCATTTTCTGA
* ** * * *
5202622 CTTATGGTTTAATCTGGGTTGTTTTCATTTTT-GACTAATGGTTTAATCCCTG-TCGTTTTCATT
66 CTTATGGTTTAATCTGGCTCATTTTCATTTTTCGACTAATGGCTTAAT-CCGGAT-ATTTTCATT
* * * * * * * * * *
5202685 TTTTGACTC-GCGATTTAATCGCGGTTATTTTTATTTTTTTGACTTGTGGTTTAATCTCGATCGT
129 TTTTAACTCAGAG-TTTAATCACAGTCATTTTCA-TTTTTTGACCTGTGCTCTAATATCGATCGT
*
5202749 TCTTCATTTTTTGACTCATGTTTTAAT
192 TCTTCATTTTTTGACTCATGGTTTAAT
5202776 CACGATCATT
Statistics
Matches: 178, Mismatches: 34, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
238 2 0.01
239 45 0.25
240 93 0.52
241 25 0.14
242 13 0.07
ACGTcount: A:0.17, C:0.14, G:0.16, T:0.54
Consensus pattern (241 bp):
GTTTAATCCCGATCGTTTTTCATTTTTTGACTGGTGGTTTAATCCTGGTCGTTTTCATTTTCTGA
CTTATGGTTTAATCTGGCTCATTTTCATTTTTCGACTAATGGCTTAATCCGGATATTTTCATTTT
TTAACTCAGAGTTTAATCACAGTCATTTTCATTTTTTGACCTGTGCTCTAATATCGATCGTTCTT
CATTTTTTGACTCATGGTTTAATTCTTATCCTTTTTTTTATGGGTA
Found at i:5202790 original size:35 final size:35
Alignment explanation
Indices: 5202226--5202846 Score: 279
Period size: 35 Copynumber: 17.8 Consensus size: 35
5202216 TTGACTTATG
* ** *
5202226 ATTTTCATTTTTTGACTCGTGGTTTTTTCTCAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5202261 ATTTTTATTTTTTGACTTATAGTTTAATCTCTATT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5202296 ATTTTCATTTTCTGACCCATGGTTTAATC-CTGATTG
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GA-TC
* * ** * *
5202332 TTTTTCTTTTTTTGACTGGTGGTTTAATC-CTGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * ** * *
5202367 GTTTTTATTTTTTGACTTGTGGTTTAATCTGGCTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * *
5202402 ATTTTCATTTTTCGACTGATGGCTTAAT-TGGGAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCT-CG-ATC
* * *
5202437 ATTTTCATTTTTTAACTCATAGTTTAATCATAG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATC-TCGATC
* * *
5202472 ATTTTCATTTTTTGAC-C-TGTGCTCTAATAAT-GGTC
1 ATTTTCATTTTTTGACTCATG-G-TTTAAT-CTCGATC
* * *
5202507 GTTTTTCATTTTTTGACTCGTGGTTTAAT-TCTTATC
1 -ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* * ** *
5202543 CTTTT--TTTTATGGGT-A--GTTTAATCCCGATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* ** * *
5202573 GTTTTCATTTTTTGACTTGTGGTTTAAT-TTGGTC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * * *
5202607 GTTTTCATTTTCTGACTTATGGTTTAATCTGGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* * *
5202642 GTTTTCA-TTTTTGACTAATGGTTTAATCCCTG-TC
1 ATTTTCATTTTTTGACTCATGGTTTAATCTC-GATC
* ** * * * *
5202676 GTTTTCATTTTTTGACTCGCGATTTAATCGCGGTT
1 ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
* **
5202711 ATTTTTATTTTTTTGACTTGTGGTTTAATCTCGATC
1 ATTTTCA-TTTTTTGACTCATGGTTTAATCTCGATC
* * *
5202747 GTTCTTCATTTTTTGACTCATGTTTTAATCACGATC
1 ATT-TTCATTTTTTGACTCATGGTTTAATCTCGATC
* * * * *
5202783 ATTTTCATTTCTTAACTCGTGAG-TTAAACCCGATC
1 ATTTTCATTTTTTGACTCATG-GTTTAATCTCGATC
** * *
5202818 ACATTCATTTTCTAACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATC
5202847 CTAATAACTT
Statistics
Matches: 447, Mismatches: 108, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
30 14 0.03
31 1 0.00
32 7 0.02
33 8 0.02
34 65 0.15
35 243 0.54
36 101 0.23
37 6 0.01
38 2 0.00
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.52
Consensus pattern (35 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCTCGATC
Found at i:5202959 original size:36 final size:34
Alignment explanation
Indices: 5202900--5203011 Score: 100
Period size: 35 Copynumber: 3.2 Consensus size: 34
5202890 AACTCGTAGC
* *
5202900 TTAATTCCAGTCATCTT-CATTTTCTGACTCATGGT
1 TTAATCCCGGTCAT-TTCCATTTTCT-ACTCATGGT
* * * * **
5202935 TTAATCCTGTTCAATTTTCTTTTTCTATCTGGTGGT
1 TTAATCCCGGTC-ATTTCCATTTTCTA-CTCATGGT
5202971 TTAATCCCGGTCATTTCCATTTTCTAACTCATGGT
1 TTAATCCCGGTCATTTCCATTTTCT-ACTCATGGT
5203006 TTAATC
1 TTAATC
5203012 TTATCATTTT
Statistics
Matches: 60, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
35 34 0.57
36 26 0.43
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (34 bp):
TTAATCCCGGTCATTTCCATTTTCTACTCATGGT
Found at i:5203094 original size:35 final size:35
Alignment explanation
Indices: 5203055--5203267 Score: 133
Period size: 35 Copynumber: 6.1 Consensus size: 35
5203045 TTCTGACTGG
*
5203055 TGGTTTAATCCAAGTCATTTCCATTTTTTGACTCA
1 TGGTTTAATCCAAGTCATTTTCATTTTTTGACTCA
** * * * *
5203090 TGGTTTAATCTTAGTCGTTTCCATTTTTTGCCTCG
1 TGGTTTAATCCAAGTCATTTTCATTTTTTGACTCA
* * * *
5203125 TGCTTTAATCTAGGTCATTTTC-TTTTTCTGACTTA
1 TGGTTTAATCCAAGTCATTTTCATTTTT-TGACTCA
* * ** ** * *
5203160 TTGTTTAGTCTC-TCTTGTTTTCATTTTCTGACTCG
1 TGGTTTAATC-CAAGTCATTTTCATTTTTTGACTCA
* * ** *
5203195 TGGTTTAATCTAGATTGTTTTTCATTTTTTAACTCA
1 TGGTTTAATCCA-AGTCATTTTCATTTTTTGACTCA
** * *
5203231 TACTTTAATCCCAGTCATTTTCATTTCTTGACTCA
1 TGGTTTAATCCAAGTCATTTTCATTTTTTGACTCA
5203266 TG
1 TG
5203268 ATTCAAACTG
Statistics
Matches: 129, Mismatches: 44, Indels: 10
0.70 0.24 0.05
Matches are distributed among these distances:
34 5 0.04
35 96 0.74
36 28 0.22
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (35 bp):
TGGTTTAATCCAAGTCATTTTCATTTTTTGACTCA
Found at i:5203117 original size:88 final size:88
Alignment explanation
Indices: 5202963--5203133 Score: 261
Period size: 88 Copynumber: 1.9 Consensus size: 88
5202953 CTTTTTCTAT
** *
5202963 CTGGTGGTTTAATCCCGGTCATTTCCATTTTCTAACTCATGGTTTAATCTTATCATTTTCATTTT
1 CTGGTGGTTTAATCCAAGTCATTTCCATTTTCTAACTCATGGTTTAATCTTATCATTTCCATTTT
*
5203028 TTGGATCGTGCTTTAATTTCTGA
66 TTGCATCGTGCTTTAATTTCTGA
* * *
5203051 CTGGTGGTTTAATCCAAGTCATTTCCATTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTT
1 CTGGTGGTTTAATCCAAGTCATTTCCATTTTCTAACTCATGGTTTAATCTTA-TCATTTCCATTT
*
5203116 TTTGCCTCGTGCTTTAAT
65 TTTGCATCGTGCTTTAAT
5203134 CTAGGTCATT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
88 48 0.65
89 26 0.35
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.49
Consensus pattern (88 bp):
CTGGTGGTTTAATCCAAGTCATTTCCATTTTCTAACTCATGGTTTAATCTTATCATTTCCATTTT
TTGCATCGTGCTTTAATTTCTGA
Found at i:5203379 original size:35 final size:35
Alignment explanation
Indices: 5203335--5204159 Score: 277
Period size: 35 Copynumber: 23.4 Consensus size: 35
5203325 TAATTTTTTG
* *
5203335 ATCGTTTTCATTTTCTGACTCATGGTTTAATCCCT
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* *
5203370 ATCATTTTCATTTTTTGACTCAAT-ATTTAAT-CTT
1 ATCGTTTTCATTTTTTGACTC-ATGATTTAATCCCT
* * * *
5203404 GATCATTTTC-TTTTTCT-AGCT-AGTGGTTTAATCTCG
1 -ATCGTTTTCATTTTT-TGA-CTCA-TGATTTAATCCCT
* * * * *
5203440 GTCATTTTCATTTTTTGACTCGTGGTTTAATCCTT
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
*
5203475 ATCGTTTTCATTTTTTGACTAATGATTTTAAT-CCT
1 ATCGTTTTCATTTTTTGACTCATGA-TTTAATCCCT
* * *
5203510 AGTCATTTT-TTTTTTCTGACT-AGTGATTTAATCTC-
1 A-TCGTTTTCATTTTT-TGACTCA-TGATTTAATCCCT
* * *
5203545 AGTCGTTGTCATTTCTTGACTCATGATTTAATCCCG
1 A-TCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * * * *
5203581 ATTGTTTTCATTTCTTAACTCATGATTTAAACCCG
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * *
5203616 ATTGTATTCATTTTTTTGACTCGTGATTTAAT-CCT
1 ATCGTTTTCA-TTTTTTGACTCATGATTTAATCCCT
* * * *
5203651 GGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCG
1 -ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* ** * *
5203687 ATCGTTTTTATTTTTTGACTCGCGATTTAATCTCG
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * ** * * * * **
5203722 GTCTTTTTTGTTTTCTAACTCGT-AGTTTAATACGG
1 ATCGTTTTCATTTTTTGACTCATGA-TTTAATCCCT
* * * ** ** *
5203757 GTCATTTTCATTTTTTAACTTGTGATTTAATTTCG
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * * *** * * ** *
5203792 GTCATTTTTCGTTCCCTGACAT-GTGATTTAGTTTCG
1 ATC-GTTTTCATTTTTTGAC-TCATGATTTAATCCCT
* * * * *
5203828 GTGGTTTTGATTTTTTGACTCATGATTTATTCTC-
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * ** *
5203862 AGTAGTTTTCATTTTTTGACAT-GTGATTTAATATCG
1 A-TCGTTTTCATTTTTTGAC-TCATGATTTAATCCCT
* * * **
5203898 ATCATTTTCCTTTCTCTGACTCATGATTTAATGAC-
1 ATCGTTTTCATTT-TTTGACTCATGATTTAATCCCT
* * * * *
5203933 AGTTGTTTTTCATTTTCTAACTTC-TGATTTAATCTCG
1 A-TCG-TTTTCATTTTTTGAC-TCATGATTTAATCCCT
* *
5203970 ATCGTTTTTATTTTTTGACTCATGGTTTAAT-CCT
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * * *
5204004 GATCATTTTCATTTTTTGACTCATGGTTTAATCTCG
1 -ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* * ** * * ** *
5204040 GTTGTTTTTGTTTTCTAACTCATGATTTAATTTCG
1 ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
* ** * * * *
5204075 GTTTTTTTCATTTTTTTACTTACGGTTTAATTCCC-
1 ATCGTTTTCATTTTTTGACTCATGATTTAA-TCCCT
***
5204110 ATCGCTTTT-ATTCCCTGACTCATGATTTAAT-CCT
1 ATCG-TTTTCATTTTTTGACTCATGATTTAATCCCT
*
5204144 AGTCATTTTCATTTTT
1 A-TCGTTTTCATTTTT
5204160 CTAATTCGTT
Statistics
Matches: 601, Mismatches: 146, Indels: 86
0.72 0.18 0.10
Matches are distributed among these distances:
33 3 0.00
34 20 0.03
35 438 0.73
36 128 0.21
37 12 0.02
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (35 bp):
ATCGTTTTCATTTTTTGACTCATGATTTAATCCCT
Found at i:5203558 original size:106 final size:106
Alignment explanation
Indices: 5203336--5204855 Score: 428
Period size: 106 Copynumber: 14.5 Consensus size: 106
5203326 AATTTTTTGA
* * *
5203336 TCGTTTTCATTTTCTGACTCATGGTTTAATCCCTATCATTTTCATTTTTTGACTCAAT-A-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACT-AATGATTTTA
* *
5203399 AT-CTTGATCATTTTCTTTTTCT-AGCTAGTGGTTTAATCTCGG
65 ATCCTTG-TCATTTTTTTTTTCTGA-CTAGTGATTTAATCTCGG
* * **
5203441 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAATGATTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTAA
* *
5203506 TCCTAGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCAG
66 TCCTTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCGG
* * * * * * * *
5203547 TCGTTGTCATTTCTTGACTCATGATTTAATCCCGATTGTTTTCATTTCTTAACTCATGATTTAAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTAA
* ** *
5203612 CCCGATTGT-ATTCATTTTTT-TGACTCGTGATTTAATC-CTGG
66 TCC--TTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTC-GG
* * ***
5203653 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTTATTTTTTGACTCGCGA-TTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTAA
* * * *
5203717 T-CTCGGTC-TTTTTTGTTTTCTAACTCGT-AGTTTAATAC-GGG
66 TCCT-TGTCATTTTTT-TTTTCTGACTAGTGA-TTTAAT-CTCGG
* * ** * ** * * * *** *
5203758 TCATTTTCATTTTTTAACTTGTGATTTAATTTCGGTCATTTTTCGTTCCCTGAC-ATGTGA-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATC-GTTTTCATTTTTTGACTA-ATGATTTT
* ** * * *
5203821 AGT--TTCGGTGGTTTTGATTTTT-TGACTCA-TGATTTATTCTCAG
64 AATCCTT--GTCATTTT-TTTTTTCTGACT-AGTGATTTAATCTCGG
* ** * * * *
5203864 TAGTTTTCATTTTTTGA--CATGTGATTTAATATCGATCATTTTCCTTTCTCTGACTCATGA-TT
1 TCGTTTTCATTTTTTGACTCATG-G-TTTAATCCCGATCGTTTTCATTT-TTTGACTAATGATTT
* ** * ** *
5203926 TAATGACAGTTGT--TTTTCATTTTCTAACTTCTGATTTAATCTCGA
63 TAAT--C-CTTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCGG
* * * * *
5203971 TCGTTTTTATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTTTGACTCATG-GTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTAA
* ** * * *
5204035 T-CTCGGTTGTTTTTGTTTTCTAACTCA-TGATTTAATTTCGG
66 TCCT-TGTCATTTTTTTTTTCTGACT-AGTGATTTAATCTCGG
** * * * *** *
5204076 TTTTTTTCATTTTTTTACTTACGGTTTAATTCCC-ATCGCTTTT-ATTCCCTGACTCATGA-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAA-TCCCGATCG-TTTTCATTTTTTGACTAATGATTTT
* * * * * * * *
5204138 AATCCTAGTCATTTTCATTTTTCTAATTCGTTATTTAATCTTTGT
64 AATCCTTGTCATTTT-TTTTTTCTGACTAGTGATTTAATC-TCGG
* * * * *** * * * * *
5204183 TTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTAGTTTTCATTATTTAAGAC-ACTG--TCT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATT-TTT-TGACTAATGATTTT
* **
5204245 AATCCTTTTCATTTTCATTTTCTGAC-----A--T-A--T--G
64 AATCCTTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCGG
* * * ** * * * *
5204276 --ATTTTCATTTTCTGACTCGTGGTTTTTTCTCAG-TCATTTTCATTTTTTGACTCAT-AGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATC-CCGATCGTTTTCATTTTTTGACTAATGATTTTA
* * * *
5204337 AT-CTCGATCATTTTCATTTTT-TGACCTA-TGGTTTAATC-CTGA
65 ATCCTTG-TCATTTT-TTTTTTCTGA-CTAGTGATTTAATCTC-GG
* ** * * * ** *
5204379 TCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTCATTTTTTGACTTGTG-GTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTA
* ** ** *
5204443 AT-CTGGCTCATTTTCACTTTTC-GACTCA-TGGCTTAAT-TGGG
65 ATCCTTG-TCATTTT-TTTTTTCTGACT-AGTGATTTAATCTCGG
** * ** * ** * *
5204484 ATTATTTTCATTTTTTTACT-ATGGTTTAAT-CATAGTCATTTTCATTTTTTGACCCATG-GTCT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGA-TCGTTTTCATTTTTTGACTAATGATTTT
* * * * ***
5204546 AATCGTGGTCATTTTTCATTTTT-TGACTTGTGGTTTAATCTTTA
64 AATCCTTGTCATTTTT--TTTTTCTGACTAGTGATTTAATCTCGG
* * ** * * * * *
5204590 TCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCGATCTTTTTCATTTTTTGAGTTATG-GTTT
1 TC-GTTTTCATTTTTTGACT-CATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTT
* * ** * * *
5204653 AGTCCTTGTCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGG
64 AATCCTTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCGG
* * ***
5204696 TTGTTTTCA-TTTTTGACTAATGGTTTAATCCCCG-TCGTTTTCATTTTTTGACTCGCGA-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAAT-CCCGATCGTTTTCATTTTTTGACTAATGATTTTA
* * *
5204758 ATCAC--GATCATTTTCATTTTTT-TGACT--TGCAATTAATTCTTGA
65 ATC-CTTG-TCATTTT--TTTTTTCTGACTAGTG-ATTTAA-TCTCGG
* * * *
5204801 TCGTTCTTCATTTTTTGACTCATGTTTTAATCACGATCATTTTCATTTCTTGACT
1 TCGTT-TTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACT
5204856 CGTGATTTGA
Statistics
Matches: 1055, Mismatches: 257, Indels: 204
0.70 0.17 0.13
Matches are distributed among these distances:
89 3 0.00
90 6 0.01
91 48 0.05
92 6 0.01
95 1 0.00
98 2 0.00
99 2 0.00
101 1 0.00
102 2 0.00
103 12 0.01
104 100 0.09
105 253 0.24
106 404 0.38
107 195 0.18
108 9 0.01
109 9 0.01
111 2 0.00
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.52
Consensus pattern (106 bp):
TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTGACTAATGATTTTAA
TCCTTGTCATTTTTTTTTTCTGACTAGTGATTTAATCTCGG
Found at i:5203925 original size:71 final size:72
Alignment explanation
Indices: 5203843--5204001 Score: 178
Period size: 71 Copynumber: 2.2 Consensus size: 72
5203833 TTTGATTTTT
* * * * *
5203843 TGACTCATGATTTATTCTCAGTAG-TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTC
1 TGACTCATGATTTAATCACAGTAGTTTTTCATTTTCTAACATCTGATTTAATATCGATCATTTTC
5203907 CTTTCTC
66 CTTTCTC
* * * * * *
5203914 TGACTCATGATTTAATGACAGTTGTTTTTCATTTTCTAACTTCTGATTTAATCTCGATCGTTTTT
1 TGACTCATGATTTAATCACAGTAGTTTTTCATTTTCTAACATCTGATTTAATATCGATCATTTTC
* *
5203979 ATTT-TT
66 CTTTCTC
*
5203985 TGACTCATGGTTTAATC
1 TGACTCATGATTTAATC
5204002 CTGATCATTT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
71 36 0.50
72 36 0.50
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (72 bp):
TGACTCATGATTTAATCACAGTAGTTTTTCATTTTCTAACATCTGATTTAATATCGATCATTTTC
CTTTCTC
Found at i:5204034 original size:70 final size:70
Alignment explanation
Indices: 5203334--5204159 Score: 415
Period size: 70 Copynumber: 11.7 Consensus size: 70
5203324 TTAATTTTTT
* * *
5203334 GATCGTTTTCATTTTCTGACTCATGGTTTAATCCCT-ATCATTTTCATTTTTTGACTCAAT-ATT
1 GATCGTTTTCATTTTTTGACTCATGATTTAAT-CCTGATCATTTTCATTTTTTGACTC-ATGGTT
*
5203397 TAATCTT
64 TAATCTC
* * * *
5203404 GATCATTTTC-TTTTTCT-AGCT-AGTGGTTTAAT-CTCGGTCATTTTCATTTTTTGACTCGTGG
1 GATCGTTTTCATTTTT-TGA-CTCA-TGATTTAATCCT-GATCATTTTCATTTTTTGACTCATGG
5203465 TTTAATC-C
62 TTTAATCTC
* * *
5203473 TTATCGTTTTCATTTTTTGACTAATGATTTTAATCCT-AGTCATTTT-TTTTTTCTGACT-AGTG
1 -GATCGTTTTCATTTTTTGACTCATGA-TTTAATCCTGA-TCATTTTCATTTTT-TGACTCA-TG
*
5203535 ATTTAATCTC
61 GTTTAATCTC
* * * ** * * *
5203545 -AGTCGTTGTCATTTCTTGACTCATGATTTAATCCCGATTGTTTTCATTTCTTAACTCATGATTT
1 GA-TCGTTTTCATTTTTTGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTT
* *
5203609 AAACCC
65 AATCTC
* * * * *
5203615 GATTGTATTCATTTTTTTGACTCGTGATTTAATCCTGGTCGTTTTCATTTTTTGACTCATGGTTT
1 GATCGTTTTCA-TTTTTTGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTT
5203680 AATCTC
65 AATCTC
* ** * * ** * * * *
5203686 GATCGTTTTTATTTTTTGACTCGCGATTTAAT-CTCGGTCTTTTTTGTTTTCTAACTCGTAGTTT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT-GATCATTTTCATTTTTTGACTCATGGTTT
*
5203750 AATAC-G
65 AAT-CTC
* * * ** * * * ***
5203756 GGTCATTTTCATTTTTTAACTTGTGATTTAAT-TTCGGTCATTTTTCGTTCCCTGA--CATGTGA
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT-GATCA-TTTTCATTTTTTGACTCATG-G-
* *
5203818 TTTAGTTTC
62 TTTAATCTC
* * * * *
5203827 GGTGGTTTTGATTTTTTGACTCATGATTT-ATTCTCAGT-AGTTTTCATTTTTTGA--CATGTGA
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCTGA-TCA-TTTTCATTTTTTGACTCATG-G-
*
5203888 TTTAATATC
62 TTTAATCTC
* * * * * * ** * * *
5203897 GATCATTTTCCTTTCTCTGACTCATGATTTAATGACAGTTGTTTTTCATTTTCTAACTTC-TGAT
1 GATCGTTTTCATTT-TTTGACTCATGATTTAAT-CCTGATCATTTTCATTTTTTGAC-TCATGGT
5203961 TTAATCTC
63 TTAATCTC
* *
5203969 GATCGTTTTTATTTTTTGACTCATGGTTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTA
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTA
5204034 ATCTC
66 ATCTC
* * ** * * * * ** * * *
5204039 GGTTGTTTTTGTTTTCTAACTCATGATTTAAT-TTCGGTTTTTTTCATTTTTTTACTTACGGTTT
1 GATCGTTTTCATTTTTTGACTCATGATTTAATCCT-GATCATTTTCATTTTTTGACTCATGGTTT
5204103 AAT-TCC
65 AATCT-C
* ***
5204109 CATCGCTTTT-ATTCCCTGACTCATGATTTAATCCT-AGTCATTTTCATTTTT
1 GATCG-TTTTCATTTTTTGACTCATGATTTAATCCTGA-TCATTTTCATTTTT
5204160 CTAATTCGTT
Statistics
Matches: 579, Mismatches: 134, Indels: 86
0.72 0.17 0.11
Matches are distributed among these distances:
68 2 0.00
69 15 0.03
70 326 0.56
71 195 0.34
72 37 0.06
73 1 0.00
74 2 0.00
75 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (70 bp):
GATCGTTTTCATTTTTTGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTA
ATCTC
Found at i:5204196 original size:36 final size:35
Alignment explanation
Indices: 5204149--5204228 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
5204139 ATCCTAGTCA
* * * *
5204149 TTTTCATTTTTCTAATTCGTTATTTAATCTTTGTTTG
1 TTTTCA-TTTTCTAACTCGTGATTTAAT-TTTGGTAG
*
5204186 TTTTCATTTTCTGACTCGTGATTTAATTTTGGTAG
1 TTTTCATTTTCTAACTCGTGATTTAATTTTGGTAG
5204221 TTTTCATT
1 TTTTCATT
5204229 ATTTAAGACA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
35 14 0.37
36 18 0.47
37 6 0.16
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.61
Consensus pattern (35 bp):
TTTTCATTTTCTAACTCGTGATTTAATTTTGGTAG
Found at i:5204525 original size:69 final size:71
Alignment explanation
Indices: 5204418--5204586 Score: 204
Period size: 69 Copynumber: 2.4 Consensus size: 71
5204408 ATCCTGGTTG
* * *
5204418 TTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCACTTTTCGACTCATGG-CTTAATTG
1 TTTTCATTTTTTGACTTGTGGTTTAATCTAGCTCATTTTCACTTTTCGACCCATGGTC-TAATCG
*
5204482 -GGATTA-
65 TGG-TCAT
* * * *
5204488 TTTTCATTTTTTTAC-TATGGTTTAATCATAG-TCATTTTCATTTTTTGACCCATGGTCTAATCG
1 TTTTCATTTTTTGACTTGTGGTTTAATC-TAGCTCATTTTCACTTTTCGACCCATGGTCTAATCG
5204551 TGGTCAT
65 TGGTCAT
5204558 TTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTTGTGGTTTAATCT
5204587 TTATCATTTT
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
69 39 0.46
70 34 0.40
71 11 0.13
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (71 bp):
TTTTCATTTTTTGACTTGTGGTTTAATCTAGCTCATTTTCACTTTTCGACCCATGGTCTAATCGT
GGTCAT
Found at i:5204758 original size:69 final size:70
Alignment explanation
Indices: 5204629--5204760 Score: 176
Period size: 69 Copynumber: 1.9 Consensus size: 70
5204619 ATCCCGATCT
* * * ** * * *
5204629 TTTTCATTTTTTGAGTTATGGTTTAGTCCTTGTCGTTTTCATTTTCTGACTTGTGGTTTAATCTG
1 TTTTCATTTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTCTGACTCGCGATTTAATCTG
5204694 GGTTG
66 GGTTG
*
5204699 TTTTCA-TTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTTTGACTCGCGATTTAATC
1 TTTTCATTTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTCTGACTCGCGATTTAATC
5204761 ACGATCATTT
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
69 47 0.89
70 6 0.11
ACGTcount: A:0.14, C:0.15, G:0.17, T:0.53
Consensus pattern (70 bp):
TTTTCATTTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTCTGACTCGCGATTTAATCTG
GGTTG
Found at i:5204760 original size:246 final size:245
Alignment explanation
Indices: 5204308--5204854 Score: 554
Period size: 246 Copynumber: 2.2 Consensus size: 245
5204298 TTTTTTCTCA
* *
5204308 GTCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCTATGGTTTAA
1 GTCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCGATAGTTTAA
* * * * *
5204373 TCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTTCATTTTTTGACTTGTG
66 TCCCGATCGTTTTTCATTTTTTGACTGATGGTTTAATCCTGGTCGTTTTCATTTTCTGACTTGTG
* *** * *
5204438 GTTTAATCTGGCTCATTTTCACTTTTCGACTCATGGCTTAATTGGGATTATTTTCATTTTTTTAC
131 GTTTAATCTGGCTCATTTTCACTTTTCGACTAATGGCTTAATCCCGATCATTTTCATTTTTTGAC
*
5204503 TATGGTTTAATCATAG-TCATTTTCATTTTTTGACCCATGGTCTAATCGTG
196 TACGGTTTAATCA-AGATCATTTTCATTTTTTGACCCATGGTCTAATCGTG
** * ** * ** *
5204553 GTCATTTTTCATTTTTTGACTTGTGGTTTAATCTTTATCATTTTTCTTTTTTTGATGGGTAGTTT
1 GTCA-TTTTCATTTTTTGACTCATAGTTTAATCTCGATCA-TTTTCATTTTTTGACCGATAGTTT
* * * *
5204618 AATCCCGATC-TTTTTCATTTTTTGAGTTATGGTTTAGTCCTTGTCGTTTTCATTTTCTGACTTG
64 AATCCCGATCGTTTTTCATTTTTTGACTGATGGTTTAATCCTGGTCGTTTTCATTTTCTGACTTG
* ** * * *
5204682 TGGTTTAATCTGGGTTGTTTTCA-TTTTTGACTAATGGTTTAATCCCCG-TCGTTTTCATTTTTT
129 TGGTTTAATCTGGCTCATTTTCACTTTTCGACTAATGGCTTAAT-CCCGATCATTTTCATTTTTT
* * * *
5204745 GACT-CGCGATTTAATCACGATCATTTTCATTTTTTTGA--CTTGCAAT-TAATTCTTG
193 GACTACG-G-TTTAATCAAGATCATTTTCA-TTTTTTGACCCATG--GTCTAA-TCGTG
* * * *
5204800 ATCGTTCTTCATTTTTTGACTCAT-GTTTTAATCACGATCATTTTCATTTCTTGAC
1 GTCATT-TTCATTTTTTGACTCATAG-TTTAATCTCGATCATTTTCATTTTTTGAC
5204855 TCGTGATTTG
Statistics
Matches: 243, Mismatches: 47, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
244 1 0.00
245 42 0.17
246 132 0.54
247 68 0.28
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.53
Consensus pattern (245 bp):
GTCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCGATAGTTTAA
TCCCGATCGTTTTTCATTTTTTGACTGATGGTTTAATCCTGGTCGTTTTCATTTTCTGACTTGTG
GTTTAATCTGGCTCATTTTCACTTTTCGACTAATGGCTTAATCCCGATCATTTTCATTTTTTGAC
TACGGTTTAATCAAGATCATTTTCATTTTTTGACCCATGGTCTAATCGTG
Found at i:5204772 original size:69 final size:69
Alignment explanation
Indices: 5204312--5206828 Score: 350
Period size: 70 Copynumber: 35.7 Consensus size: 69
5204302 TTCTCAGTCA
* *
5204312 TTTTCATTTTTTGACTCAT-AGTTTAATCTCGATCATTTTCATTTTTTGACCTATGGTTTAATCC
1 TTTTCATTTTTTGACTCGTGA-TTTAATCACGATCATTTTCATTTTTTGA-CTATGGTTTAATCC
5204376 -TGATCG
64 TTG-TCG
* * * * ** *
5204382 TTTTTCTTTTTTTGACTGGTGGTTTAATC-CTGGTTGTTTTCATTTTTTGACTTGTGGTTTAAT-
1 -TTTTCATTTTTTGACTCGTGATTTAATCAC-GATCATTTTCATTTTTTGAC-TATGGTTTAATC
* *
5204445 CTGGCTCA
63 CTTG-TCG
* * * ** *** * * * *
5204453 TTTTCACTTTTCGACTCATGGCTTAATTGGGATTATTTTCATTTTTTTACTATGGTTTAATCATA
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACTATGGTTTAATCCTT
*
5204518 GTCA
66 GTCG
* * * * ** * * *
5204522 TTTTCATTTTTTGACCCATGGTCTAATCGTGGTCATTTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCA-TTTTCATTTTTTGAC-TATGGTTTAATCC
* *
5204587 TTATCAT
64 TTGTC-G
* * * * * *
5204594 TTTTCTTTTTTTGA-T-GGGTAGTTTAATCCCGATCTTTTTCATTTTTTGAGTTATGGTTTAGTC
1 TTTTCATTTTTTGACTCGTG-A-TTTAATCACGATCATTTTCATTTTTTGA-CTATGGTTTAATC
5204657 CTTGTCG
63 CTTGTCG
* * * ** * ** *
5204664 TTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCA-TTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTTAATCCT
*
5204728 CGTCG
65 TGTCG
* ** *
5204733 TTTTCATTTTTTGACTCGCGATTTAATCACGATCATTTTCATTTTTTTGACT-TGCAATTAATTC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCA-TTTTTTGACTATG-GTTTAATCC
5204797 TTGATCG
64 TTG-TCG
* * * * * *
5204804 TTCTTCATTTTTTGACTCATGTTTTAATCACGATCATTTTCATTTCTTGACTCGTGATTTGAACC
1 TT-TTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTT-AATC
5204869 CGATTG-CG
63 C--TTGTCG
* * * * *
5204877 --TTCATTTTTTGAATCATGGTTTAATCCCAATCATTTT--TCTTTTT--C-A---TTT--T--T
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCAT-TTTTTGACTATGGTTTAATCCT
5204928 TGATCG
65 TG-TCG
* * * *
5204934 TTTTCATTTTCTAACTCGT-AGCTTAATTCTA-G-TCATTTTCATTTTTTGTCTCATGGTTTAAT
1 TTTTCATTTTTTGACTCGTGA-TTTAA-TC-ACGATCATTTTCATTTTTTGACT-ATGGTTTAAT
*
5204996 CC-TGTTCAT
62 CCTTG-TC-G
* * * * * *
5205005 TTTTC-TTTTTCTGAC-CGATGGTTTAATCCCGGTCATTTCCATTTTCTGACTCAAGGTTTAATC
1 TTTTCATTTTT-TGACTCG-TGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTTAATC
*** *
5205068 CCACTTG
63 CTTGTCG
** * * * * ** * * **
5205075 TTTTTGTTTTCTGACTCGTGGTTTAATCGAGGTTGTTTTTCATTTTCTAACTCATACTTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATC-ACGATCATTTTCATTTTTTGACT-ATGGTTTAAT-C
* *
5205140 CAT-TCA
63 CTTGTCG
* ** * * *** * * * *
5205146 TTTTCATTTCTTGACTAATGATTCAA--ACTGGTCGCATTCATTTTCTAACTCGTGGTTTAGTCC
1 TTTTCATTTTTTGACTCGTGATTTAATCAC-GATCATTTTCATTTTTTGACT-ATGGTTTAATCC
*
5205209 -CGATC-
64 TTG-TCG
* * * * *
5205214 ATTT--TTTTTTCA-T--T--TTT--T-A--ATCATTTTCATTTTCTGACTCGTGGTTTAATCCA
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTTAATCCT
** *
5205267 AATCA
65 TGTCG
* * * * * *
5205272 TTTTC-TTTTTCCGACTCAATG-TTTAATCTCAATCGTTTTCCTTTTTCT-AGCTAGTGGTTTAA
1 TTTTCATTTTT-TGACTC-GTGATTTAATCACGATCATTTTCATTTTT-TGA-CTA-TGGTTTAA
* *
5205334 T-CTCGATCA
61 TCCTTG-TCG
* * * * * *
5205343 TTTTCATTTTTTGACTCCTGGTTTAATC-CTTATCATTTTCAATTTTGGACTAGTGATTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCAC-GATCATTTTCATTTTTTGACTA-TGGTTTAATCC
* *
5205407 TGGTCA
64 TTGTCG
* * * *
5205413 TTTT--TTATTTATGACTCGTGATTTAATCTTA-G-TCGTTGTCATTTCTTGACTCATGATTTAA
1 TTTTCATT-TTT-TGACTCGTGATTTAATC--ACGATCATTTTCATTTTTTGACT-ATGGTTTAA
* *
5205474 TCC-CGATTG
61 TCCTTG-TCG
* * * * * * * *
5205483 TTTTCAATTCTTAACTCATGATTTAAACCCGAT-AGTATTCATTTTTTTGACTCGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCA-TTTTCA-TTTTTTGACT-ATGGTTTAATC
*
5205547 CTAGTCG
63 CTTGTCG
* * * * *
5205554 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAAT-CT
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTTAATCCT
* *
5205618 CGATCT
65 TG-TCG
** * * * *
5205624 TTTTTGTTTTCTAACTCGT-AGTTTAATACGGTTTAATCCTGATCATTTTTATTTTTTGACTCGT
1 TTTTCATTTTTTGACTCGTGA-TTTAAT-C------A--C-GATCATTTTCATTTTTTGACT-AT
* *
5205688 GGTTTAAT-CTCGGTTG
54 GGTTTAATCCT-TGTCG
** * ** * *
5205704 TTTTTGTTTTTTGACTCATGATTTAATTTCGGTCTTTTTCATTTTTTGACT-TGCGATTTAATTC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACTATG-G-TTTAA-TC
**
5205768 C-CATCG
63 CTTGTCG
*** ** * * * * *
5205774 CTTTT-ATTCCCTGACTTATGATTTAATC-CTGGTCATTTTCGTATTTCTT-ATTCGTGATTTAA
1 -TTTTCATTTTTTGACTCGTGATTTAATCAC-GATCATTTTC--ATTTTTTGACT-ATGGTTTAA
* *
5205836 TCCTTATTG
61 TCCTTGTCG
* ** *** * * ** * *
5205845 TTTTCATTTTCTGACTTATGATTTAATTTTGGTTATTTTCATTATGTAAGAC-ACGGTCTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATT-T-TTTGACTATGGTTTAATCC
* * *
5205909 CTCTCA
64 TTGTCG
** * * **
5205915 TTTTCATTTTTTGACTCGTGATTTTTTCTC-AGTCATTTTCATTTTTCGACTCACAGTTTAATCC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGA-TCATTTTCATTTTTTGACT-ATGGTTTAATCC
** *
5205979 CGGTCA
64 TTGTCG
* * ** * ** *
5205985 TTTTCATTTTTTAACTCATGATTTAATTTCGGTCATCTTTCATTCCTTGAC-ATGTGATTTAGT-
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCAT-TTTCATTTTTTGACTATG-G-TTTAATC
* *
5206048 TTTGATGG
63 CTTG-TCG
* * * * * * *
5206056 TTTTGATTTTCTGACTCATGATTTATTCTC-AGT-AGTTTCCATTTTTTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGA-TCA-TTTTCATTTTTTGACT-ATGGTTTAATC
* *
5206119 CTGGTCA
63 CTTGTCG
* * * ** * *
5206126 TTTTCATTTTTTTTATTCATGATTTAATC-CTTG-TTGTTTTCACTTTCTGACT-TGTGATTTAA
1 TTTTCA-TTTTTTGACTCGTGATTTAATCAC--GATCATTTTCATTTTTTGACTATG-G-TTTAA
5206188 TTTTCTAACTTGT-G
61 ---TC---CTTGTCG
* * ** * * * * * *
5206202 ATTTAATTTTGGTTGTTTTCATTATGTAAGACACGGTCTAATCCCTCTCATTTTCATTTTCTGAC
1 TTTTCATTTT--TTG-ACTCGTGATTTAA-TCACGATC--AT---TTTCA---T--TTTT-TGAC
* * * * *
5206267 TCGTGGTTT-TTTCTCAGTCA
51 T-ATGGTTTAATCCT-TGTCG
* * * * *
5206287 TTTTCATTTTCTGACTCAT-AGTTTAATCTCGATCATTTTC-TTTTTCTGACCCATGGTTTAACC
1 TTTTCATTTTTTGACTCGTGA-TTTAATCACGATCATTTTCATTTTT-TGA-CTATGGTTTAATC
* *
5206350 CTTATCAT
63 CTTGTC-G
* * * * * **
5206358 TTTTCTTTTTTTGACTGGTGGTTTGATC-CTGGTTGTTTTCATTTTTTGACT-T-GTTTAAT-CT
1 TTTTCATTTTTTGACTCGTGATTTAATCAC-GATCATTTTCATTTTTTGACTATGGTTTAATCCT
* *
5206419 GGCTCA
65 TG-TCG
** *** * *
5206425 TTTTCATTTTTTGACTTATGGCCTAATCGA-GATTATTTTCATTTTTTGACTCATGGTTTAATCA
1 TTTTCATTTTTTGACTCGTGATTTAATC-ACGATCATTTTCATTTTTTGACT-ATGGTTTAATCC
* *
5206489 TAGTCA
64 TTGTCG
* * * * * * * * *
5206495 TTTTTATTTTTTGACCCGTGGTCTAA-CATTGGTCGTTTTTCATTTTTTAACTTGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGATTTAATCA-CGATC-ATTTTCATTTTTTGAC-TATGGTTTAATC
* * *
5206559 CCTATCAT
63 CTTGTC-G
* * * **
5206567 TTTTC-TTTTTTGA-T-GGGTAGTTTAATCCCTATTGTTTTCATTTTTTGACTTATGGTTTAATC
1 TTTTCATTTTTTGACTCGTG-A-TTTAATCACGATCATTTTCATTTTTTGAC-TATGGTTTAATC
*
5206629 CTGGTCG
63 CTTGTCG
* * * ** * ** *
5206636 TTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT-ATGGTTTAATCCT
*
5206701 CGTCG
65 TGTCG
* * * * *
5206706 TTTTCATTTTTCGACTCGCGATTTAATCACGGTCATTTTTATTTTTTTGACTCATAGTTTAAT-C
1 TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCA-TTTTTTGACT-ATGGTTTAATCC
* *
5206770 TCGGTTG
64 T-TGTCG
* * ** *
5206777 TTCTTCATTTTTTGACTCATGTTTTAATCACGATCGCTTTCATTTCTTGACT
1 TT-TTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACT
5206829 CGTGACTTGA
Statistics
Matches: 1785, Mismatches: 456, Indels: 410
0.67 0.17 0.15
Matches are distributed among these distances:
55 3 0.00
57 31 0.02
58 3 0.00
59 29 0.02
60 9 0.01
61 4 0.00
62 4 0.00
63 1 0.00
64 2 0.00
65 4 0.00
66 6 0.00
67 48 0.03
68 25 0.01
69 153 0.09
70 629 0.35
71 552 0.31
72 129 0.07
73 9 0.01
74 2 0.00
75 7 0.00
76 7 0.00
77 6 0.00
78 11 0.01
79 5 0.00
80 56 0.03
81 9 0.01
82 8 0.00
83 4 0.00
84 6 0.00
85 8 0.00
86 1 0.00
89 3 0.00
90 8 0.00
91 1 0.00
92 2 0.00
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.51
Consensus pattern (69 bp):
TTTTCATTTTTTGACTCGTGATTTAATCACGATCATTTTCATTTTTTGACTATGGTTTAATCCTT
GTCG
Found at i:5204781 original size:211 final size:209
Alignment explanation
Indices: 5204276--5204786 Score: 548
Period size: 211 Copynumber: 2.4 Consensus size: 209
5204266 CTGACATATG
* * ** * * *
5204276 ATTTTCATTTTCTGACTCGTGGTTTTTTCTCAGTCATTTTCATTTTTTGACTCATAGTTTAATCT
1 ATTTTCATTTTTTGACT-ATGGTTTAATCACAGTCATTTTCATTTTTTGACTCAGA-TTTAATCA
* * * *
5204341 CGATCATTTTCATTTTTTGACCTATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTT
64 CGATCATTTTCATTTTTTGACTTGTGGTTTAATCCTGATCATTTTTCTTTTTTTGACTGGTAGTT
* * *
5204406 TAATCCTGGTTGTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCACTTTTCGACTCA
129 TAATCCCGATTGTTTTCATTTTTTGACTTATGGTTTAATCTGGCTCATTTTCACTTTTCGACTCA
5204471 TGGCTTAATTGGGATT
194 TGGCTTAATTGGGATT
* * * * * **
5204487 ATTTTCATTTTTTTACTATGGTTTAATCATAGTCATTTTCATTTTTTGACCCATGGTCTAATCGT
1 ATTTTCATTTTTTGACTATGGTTTAATCACAGTCATTTTCATTTTTTGACTCA-GATTTAATCAC
* * *
5204552 GGTCATTTTTCATTTTTTGACTTGTGGTTTAATCTTTATCATTTTTCTTTTTTTGA-TGGGTAGT
65 GATCA-TTTTCATTTTTTGACTTGTGGTTTAATCCTGATCATTTTTCTTTTTTTGACT-GGTAGT
* * * *
5204616 TTAATCCCGATCT-TTTTCATTTTTTGAGTTATGGTTTAGTCCTTG-TCGTTTTCA-TTTTCTGA
128 TTAATCCCGAT-TGTTTTCATTTTTTGACTTATGGTTTAAT-CTGGCTCATTTTCACTTTTC-GA
** *
5204678 CTTGTGGTTTAATCTGGG-TT
190 CTCATGGCTTAAT-TGGGATT
* * * * *
5204698 GTTTTCA-TTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTTTGACTCGCGATTTAATCA
1 ATTTTCATTTTTTGACT-ATGGTTTAATCACAGTCATTTTCATTTTTTGACTC-AGATTTAATCA
5204762 CGATCATTTTCATTTTTTTGACTTG
64 CGATCATTTTCA-TTTTTTGACTTG
5204787 CAATTAATTC
Statistics
Matches: 247, Mismatches: 43, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
210 60 0.24
211 179 0.72
212 8 0.03
ACGTcount: A:0.16, C:0.15, G:0.15, T:0.53
Consensus pattern (209 bp):
ATTTTCATTTTTTGACTATGGTTTAATCACAGTCATTTTCATTTTTTGACTCAGATTTAATCACG
ATCATTTTCATTTTTTGACTTGTGGTTTAATCCTGATCATTTTTCTTTTTTTGACTGGTAGTTTA
ATCCCGATTGTTTTCATTTTTTGACTTATGGTTTAATCTGGCTCATTTTCACTTTTCGACTCATG
GCTTAATTGGGATT
Found at i:5204815 original size:36 final size:35
Alignment explanation
Indices: 5204730--5204857 Score: 123
Period size: 36 Copynumber: 3.6 Consensus size: 35
5204720 TTAATCCCCG
*
5204730 TCGTTTTCATTTTTTGACTCGCGATTTAATCACGA
1 TCGTTTTCATTTTTTGACTCGCGAATTAATCACGA
* * **
5204765 TCATTTTCATTTTTTTGACTTGC-AATTAATTCTTGA
1 TCGTTTTCA-TTTTTTGACTCGCGAATTAA-TCACGA
** **
5204801 TCGTTCTTCATTTTTTGACTCATGTTTTAATCACGA
1 TCGTT-TTCATTTTTTGACTCGCGAATTAATCACGA
* *
5204837 TCATTTTCATTTCTTGACTCG
1 TCGTTTTCATTTTTTGACTCG
5204858 TGATTTGAAC
Statistics
Matches: 73, Mismatches: 16, Indels: 8
0.75 0.16 0.08
Matches are distributed among these distances:
35 27 0.37
36 38 0.52
37 8 0.11
ACGTcount: A:0.20, C:0.19, G:0.11, T:0.51
Consensus pattern (35 bp):
TCGTTTTCATTTTTTGACTCGCGAATTAATCACGA
Found at i:5204817 original size:211 final size:207
Alignment explanation
Indices: 5204276--5204855 Score: 544
Period size: 211 Copynumber: 2.7 Consensus size: 207
5204266 CTGACATATG
* * ** * * *
5204276 ATTTTCATTTTCTGACTCGTGGTTTTTTCTCAGTCATTTTCATTTTTTGACTCATAGTTTAATCT
1 ATTTTCATTTTTTGACT-ATGGTTTAATCACAGTCATTTTCATTTTTTGACTCAGA-TTTAATCA
* *
5204341 CGATCATTTTCATTTTTTGACCTATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTT
64 CGATCATTTTCATTTTTTGA-CT-TGGTTTAATCTTGATCGTTTTTCTTTTTTTGACTGGTAGTT
* * *
5204406 TAATCCTGGTTGTTTTCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCACTTTTCGACTCA
127 TAATCCCGATTGTTTTCATTTTTTGACTTATGGTTTAATCTGGCTCATTTTCACTTTTCGACTCA
5204471 TGGCTTAATTGGGATT
192 TGGCTTAATTGGGATT
* * * * * **
5204487 ATTTTCATTTTTTTACTATGGTTTAATCATAGTCATTTTCATTTTTTGACCCATGGTCTAATCGT
1 ATTTTCATTTTTTGACTATGGTTTAATCACAGTCATTTTCATTTTTTGACTCA-GATTTAATCAC
* * *
5204552 GGTCATTTTTCATTTTTTGACTTGTGGTTTAATCTTTATCATTTTTCTTTTTTTGA-TGGGTAGT
65 GATCA-TTTTCATTTTTTGAC-T-TGGTTTAATCTTGATCGTTTTTCTTTTTTTGACT-GGTAGT
* * * *
5204616 TTAATCCCGATCT-TTTTCATTTTTTGAGTTATGGTTTAGTCCTTG-TCGTTTTCA-TTTTCTGA
126 TTAATCCCGAT-TGTTTTCATTTTTTGACTTATGGTTTAAT-CTGGCTCATTTTCACTTTTC-GA
** *
5204678 CTTGTGGTTTAATCTGGG-TT
188 CTCATGGCTTAAT-TGGGATT
* * * * *
5204698 GTTTTCA-TTTTTGACTAATGGTTTAATCCCCGTCGTTTTCATTTTTTGACTCGCGATTTAATCA
1 ATTTTCATTTTTTGACT-ATGGTTTAATCACAGTCATTTTCATTTTTTGACTC-AGATTTAATCA
** * * **
5204762 CGATCATTTTCATTTTTTTGACTTGCAATTAATTCTTGATCGTTCTTCATTTTTTGACTCAT-GT
64 CGATCATTTTCA-TTTTTTGACTTG-GTTTAA-TCTTGATCGTTTTTCTTTTTTTGACTGGTAG-
* ** *
5204826 TTTAATCACGATCATTTTCATTTCTTGACT
125 TTTAATCCCGATTGTTTTCATTTTTTGACT
5204856 CGTGATTTGA
Statistics
Matches: 299, Mismatches: 54, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
209 2 0.01
210 67 0.22
211 221 0.74
212 9 0.03
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (207 bp):
ATTTTCATTTTTTGACTATGGTTTAATCACAGTCATTTTCATTTTTTGACTCAGATTTAATCACG
ATCATTTTCATTTTTTGACTTGGTTTAATCTTGATCGTTTTTCTTTTTTTGACTGGTAGTTTAAT
CCCGATTGTTTTCATTTTTTGACTTATGGTTTAATCTGGCTCATTTTCACTTTTCGACTCATGGC
TTAATTGGGATT
Found at i:5205069 original size:35 final size:35
Alignment explanation
Indices: 5204276--5205154 Score: 267
Period size: 35 Copynumber: 25.3 Consensus size: 35
5204266 CTGACATATG
* ** * *
5204276 ATTTTCATTTTCTGACTCGTGGTTTTTTCTCAGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * * *
5204311 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * *
5204346 ATTTTCATTTTTTGAC-CTATGGTTTAATCCTGATC
1 ATTTTCATTTTCTGACTC-ATGGTTTAATCCCGGTC
* * * ** * *
5204381 GTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTT
1 -ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * ** *
5204417 GTTTTCATTTTTTGACTTGTGGTTTAAT-CTGGCTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGG-TC
* ** *
5204452 ATTTTCACTTTTC-GACTCATGGCTTAAT-TGGGATT
1 ATTTTCA-TTTTCTGACTCATGGTTTAATCCCGG-TC
* * ***
5204487 ATTTTCATTTTTTTACT-ATGGTTTAATCATAGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * * **
5204521 ATTTTCATTTTTTGACCCATGGTCTAATCGTGGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* ** ****
5204556 ATTTTTCATTTTTTGACTTGTGGTTTAATCTTTATC
1 A-TTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * ** * *
5204592 ATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCGATC
1 A-TTTTCATTTTCTGACT-CATGGTTTAATCCCGGTC
* * * * * **
5204628 TTTTTCATTTTTTGAGTTATGGTTTAGTCCTTGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* ** ** *
5204663 GTTTTCATTTTCTGACTTGTGGTTTAATCTGGGTT
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * *
5204698 GTTTTCATTTT-TGACTAATGGTTTAATCCCCGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * ** * * *
5204732 GTTTTCATTTTTTGACTCGCGATTTAATCACGATC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* ** ** *
5204767 ATTTTCATTTTTTTGACT--TGCAATTAATTCTTGATC
1 ATTTTCA-TTTTCTGACTCATG-GTTTAA-TCCCGGTC
* * * * *
5204803 GTTCTTCATTTTTTGACTCATGTTTTAATCACGATC
1 ATT-TTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * * *
5204839 ATTTTCA-TTTCTTGACTCGTGATTTGAA-CCCGATT
1 ATTTTCATTTTC-TGACTCATGGTTT-AATCCCGGTC
*** * * **
5204874 GCGTTCATTTTTTGAATCATGGTTTAATCCCAATC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* *
5204909 ATTTT--TCTTT-T---TCAT--TTT--T--TGATC
1 ATTTTCAT-TTTCTGACTCATGGTTTAATCCCGGTC
* * * * * * **
5204933 GTTTTCATTTTCTAACTCGTAGCTTAATTCTAGTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* * * *
5204968 ATTTTCATTTTTTGTCTCATGGTTTAATCCTGTTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
*
5205003 ATTTTTCTTTTTCTGAC-CGATGGTTTAATCCCGGTC
1 A-TTTTCATTTTCTGACTC-ATGGTTTAATCCCGGTC
* * ** *
5205039 ATTTCCATTTTCTGACTCAAGGTTTAATCCCACTT
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
* ** * ** *
5205074 GTTTTTGTTTTCTGACTCGTGGTTTAATCGAGGTTG
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGG-TC
* * ** **
5205110 TTTTTCATTTTCTAACTCATACTTTAATCCCATTC
1 ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
5205145 ATTTTCATTT
1 ATTTTCATTT
5205155 CTTGACTAAT
Statistics
Matches: 640, Mismatches: 165, Indels: 78
0.72 0.19 0.09
Matches are distributed among these distances:
24 7 0.01
25 3 0.00
26 3 0.00
28 3 0.00
29 3 0.00
30 4 0.01
31 2 0.00
33 3 0.00
34 71 0.11
35 350 0.55
36 181 0.28
37 8 0.01
38 2 0.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (35 bp):
ATTTTCATTTTCTGACTCATGGTTTAATCCCGGTC
Found at i:5205282 original size:35 final size:34
Alignment explanation
Indices: 5205233--5205650 Score: 199
Period size: 35 Copynumber: 11.9 Consensus size: 34
5205223 TCATTTTTTA
* *
5205233 ATCATTTTCATTTTCTGACTCGTGGTTTAATCCAA
1 ATCATTTTCTTTTTCTGACTCGTGGTTTAATCC-G
* * *
5205268 ATCATTTTCTTTTTCCGACTCAAT-GTTTAATCTCA
1 ATCATTTTCTTTTTCTGACTC-GTGGTTTAATC-CG
* *
5205303 ATCGTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCG
1 ATCATTTT-CTTTTTCTGA-CTCGTGGTTTAATC-CG
* *
5205339 ATCATTTTCATTTTT-TGACTCCTGGTTTAATCCTT
1 ATCATTTTC-TTTTTCTGACTCGTGGTTTAATCC-G
* * * *
5205374 ATCATTTTCAATTTT-GGACTAGTGATTTAATCCTG
1 ATCATTTTC-TTTTTCTGACTCGTGGTTTAATCC-G
* * * **
5205409 GTCATTTT-TTATTTATGACTCGTGATTTAATCTT
1 ATCATTTTCTT-TTTCTGACTCGTGGTTTAATCCG
* * * * *
5205443 AGTCGTTGTC-ATTTCTTGACTCATGATTTAATCCCG
1 A-TCATTTTCTTTTTC-TGACTCGTGGTTTAAT-CCG
** ** * * * *
5205479 ATTGTTTTC-AATTCTTAACTCATGATTTAAACCCG
1 ATCATTTTCTTTTTC-TGACTCGTGGTTT-AATCCG
* * *
5205514 AT-AGTATTCATTTTTTTGACTCGTGGTTTAATCCT
1 ATCA-TTTTC-TTTTTCTGACTCGTGGTTTAATCCG
* *
5205549 AGTCGTTTTCATTTTT-TGACTCATGGTTTAATCTCG
1 A-TCATTTTC-TTTTTCTGACTCGTGGTTTAATC-CG
*
5205585 ATCATTTTCATTTTCTGACTCGTGGTTTAATCTCG
1 ATCATTTTCTTTTTCTGACTCGTGGTTTAATC-CG
* * *
5205620 ATC-TTTTTTGTTTTCTAACTCGTAGTTTAAT
1 ATCATTTTCT-TTTTCTGACTCGTGGTTTAAT
5205651 ACGGTTTAAT
Statistics
Matches: 302, Mismatches: 58, Indels: 46
0.74 0.14 0.11
Matches are distributed among these distances:
33 1 0.00
34 15 0.05
35 223 0.74
36 61 0.20
37 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (34 bp):
ATCATTTTCTTTTTCTGACTCGTGGTTTAATCCG
Found at i:5205546 original size:71 final size:70
Alignment explanation
Indices: 5205451--5205627 Score: 178
Period size: 71 Copynumber: 2.5 Consensus size: 70
5205441 TTAGTCGTTG
* * * *
5205451 TCATTTCTTGACTCATGATTTAATCCCGATTGTTTTCAATTCTTAACTCATGATTTAAACCCGAT
1 TCATTTTTTGACTCGTGGTTTAATCCCGATCGTTTTCAATTCTTAACTCATGATTTAAACCCGAT
5205516 -AGTAT
66 CA-TAT
* * * * * * *
5205521 TCATTTTTTTGACTCGTGGTTTAAT-CCTAGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCG
1 TCA-TTTTTTGACTCGTGGTTTAATCCCGA-TCGTTTTCAATTCTTAACTCATGATTTAAACCCG
*
5205585 ATCATTT
64 ATCATAT
* * *
5205592 TCATTTTCTGACTCGTGGTTTAATCTCGATCTTTTT
1 TCATTTTTTGACTCGTGGTTTAATCCCGATCGTTTT
5205628 TGTTTTCTAA
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
70 32 0.37
71 54 0.62
72 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (70 bp):
TCATTTTTTGACTCGTGGTTTAATCCCGATCGTTTTCAATTCTTAACTCATGATTTAAACCCGAT
CATAT
Found at i:5205614 original size:106 final size:105
Alignment explanation
Indices: 5205237--5205614 Score: 281
Period size: 106 Copynumber: 3.6 Consensus size: 105
5205227 TTTTTAATCA
* * * * * *
5205237 TTTTCATTTTCTGACTCGTGGTTTAATCCAAATCATTTTCTTTTTCCGACTCAATG-TTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCAGATCATTTTCATTTTCTGACTC-ATGATTTAAAC-
* * * * * * * *
5205301 CAATCGTTTTCCTTTTTCT-AGCTAGTGGTTTAAT-CTCGATCA
64 CCATAGTATTCATTTTTTTGA-CTCGTGGTTTAATCCTAG-TCG
* ** * *
5205343 TTTTCATTTTTTGACTCCTGGTTTAATCCTTATCATTTTCAATTTT-GGACT-AGTGATTT-AAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCAGATCATTTTC-ATTTTCTGACTCA-TGATTTAAAC
* * * *
5205405 CC-TGGTCATT-TTTTATTTATGACTCGTGATTTAATCTTAGTCG
64 CCATAGT-ATTCATTT-TTT-TGACTCGTGGTTTAATCCTAGTCG
* * * * ** * *
5205448 TTGTCATTTCTTGACTCATGATTTAATCCCGATTGTTTTCA-ATTCTTAACTCATGATTTAAACC
1 TTTTCATTTTTTGACTCATGGTTTAATCCAGATCATTTTCATTTTC-TGACTCATGATTTAAACC
5205512 CGATAGTATTCATTTTTTTGACTCGTGGTTTAATCCTAGTCG
65 C-ATAGTATTCATTTTTTTGACTCGTGGTTTAATCCTAGTCG
* *
5205554 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTCATTTTCTGACTCGTGGTTTAA
1 TTTTCATTTTTTGACTCATGGTTTAATC-CAGATCATTTTCATTTTCTGACTCATGATTTAA
5205615 TCTCGATCTT
Statistics
Matches: 212, Mismatches: 43, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
103 8 0.04
104 7 0.03
105 58 0.27
106 119 0.56
107 14 0.07
108 6 0.03
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (105 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCAGATCATTTTCATTTTCTGACTCATGATTTAAACCC
ATAGTATTCATTTTTTTGACTCGTGGTTTAATCCTAGTCG
Found at i:5205659 original size:45 final size:45
Alignment explanation
Indices: 5205608--5205695 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
5205598 TCTGACTCGT
* *
5205608 GGTTTAAT-CTCGATCTTTTTTGTTTTCTAACTCGTAGTTTAATAC
1 GGTTTAATCCT-GATCATTTTTATTTTCTAACTCGTAGTTTAATAC
* * *
5205653 GGTTTAATCCTGATCATTTTTATTTTTTGACTCGTGGTTTAAT
1 GGTTTAATCCTGATCATTTTTATTTTCTAACTCGTAGTTTAAT
5205696 CTCGGTTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (45 bp):
GGTTTAATCCTGATCATTTTTATTTTCTAACTCGTAGTTTAATAC
Found at i:5205729 original size:80 final size:80
Alignment explanation
Indices: 5205573--5205730 Score: 214
Period size: 80 Copynumber: 2.0 Consensus size: 80
5205563 TTTGACTCAT
5205573 GGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTCGATCTTTTTTGTTTTCTAA
1 GGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTCGATCTTTTTTGTTTTCTAA
*
5205638 CTCGTAGTTTAATAC
66 CTCATAGTTTAATAC
* * * *
5205653 GGTTTAATC-CTGATCATTTTTATTTTTTGACTCGTGGTTTAATCTCGGT-TGTTTTTGTTTTTT
1 GGTTTAATCTC-GATCATTTTCATTTTCTGACTCGTGGTTTAATCTCGATCT-TTTTTGTTTTCT
*
5205716 GACTCAT-GATTTAAT
64 AACTCATAG-TTTAAT
5205731 TTCGGTCTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
79 3 0.04
80 66 0.96
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (80 bp):
GGTTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCTCGATCTTTTTTGTTTTCTAA
CTCATAGTTTAATAC
Found at i:5205765 original size:115 final size:115
Alignment explanation
Indices: 5205538--5205748 Score: 271
Period size: 115 Copynumber: 1.8 Consensus size: 115
5205528 TTTGACTCGT
*
5205538 GGTTTAATCCTAGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTGA
1 GGTTTAATCCTAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTGA
* * **
5205603 CTCGTGGTTTAATCTCGATCTTTTTTGTTTTCTAACTCGTAGTTTAATAC
66 CTCATGATTTAATCTCGATCTTTTTCATTTTCTAACTCGTAGTTTAATAC
* * * ** ** *
5205653 GGTTTAATCCT-GATCATTTTTATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTTTG
1 GGTTTAATCCTAG-TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTG
* *
5205717 ACTCATGATTTAATTTCGGTCTTTTTCATTTT
65 ACTCATGATTTAATCTCGATCTTTTTCATTTT
5205749 TTGACTTGCG
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
114 1 0.01
115 79 0.99
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.54
Consensus pattern (115 bp):
GGTTTAATCCTAGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTCTGA
CTCATGATTTAATCTCGATCTTTTTCATTTTCTAACTCGTAGTTTAATAC
Found at i:5206167 original size:36 final size:36
Alignment explanation
Indices: 5205340--5206156 Score: 173
Period size: 35 Copynumber: 22.9 Consensus size: 36
5205330 TTAATCTCGA
* * **
5205340 TCATTTTCA-TTTTTTGACTCCTGGTTTAATCCTTA
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
* *
5205375 TCATTTTCA-ATTTTGGACT-AGTGATTTAATCCTGG
1 TCATTTTCATTTTTTTGACTCA-TGATTTAATCCTGG
* * * *
5205410 TCATTTT--TTATTTATGACTCGTGATTTAATCTTAG
1 TCATTTTCATT-TTTTTGACTCATGATTTAATCCTGG
* * * * *
5205445 TCGTTGTCA-TTTCTTGACTCATGATTTAATCCCGA
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
** * * * * * *
5205480 TTGTTTTCA-ATTCTTAACTCATGATTTAAACCCGA
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
* * * *
5205515 T-AGTATTCATTTTTTTGACTCGTGGTTTAATCCTAG
1 TCA-TTTTCATTTTTTTGACTCATGATTTAATCCTGG
* * *
5205551 TCGTTTTCA-TTTTTTGACTCATGGTTTAAT-CTCGA
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
* * * *
5205586 TCATTTTCA-TTTTCTGACTCGTGGTTTAAT-CTCGA
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
* ** ** * * *
5205621 TCTTTTTTGTTTTCTAACTCGTAGTTTAATACGGTTTAATCCTGA
1 TCATTTTCATTTT-T---T--T-GACTCAT--GATTTAATCCTGG
* * *
5205666 TCATTTTTA-TTTTTTGACTCGTGGTTTAAT-CTCGG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
** *
5205701 TTGTTTT--TGTTTTTTGACTCATGATTTAAT-TTCGG
1 TCATTTTCAT-TTTTTTGACTCATGATTTAATCCT-GG
* *** *
5205736 TCTTTTTCA-TTTTTTGACTTGCGATTTAATTCCCATCG
1 TCATTTTCATTTTTTTGACTCATGATTTAA-T-CC-TGG
*** *
5205774 -C-TTTT-A-TTCCCTGACTTATGATTTAATCCTGG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
* * * * **
5205806 TCATTTTCGTATTTCTT-ATTCGTGATTTAATCCTTA
1 TCATTTTCAT-TTTTTTGACTCATGATTTAATCCTGG
** * * **
5205842 TTGTTTTCA-TTTTCTGACTTATGATTTAATTTTGG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
* * ** * * * *
5205877 TTATTTTCATTATGTAAGA--CACGGTCTAATCCCT-C
1 TCATTTTCATT-TTTTTGACTCATGATTTAAT-CCTGG
* * * *
5205912 TCATTTTCA-TTTTTTGACTCGTGATTT-TTTCTCAG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
* * *
5205947 TCATTTTCA-TTTTTCGACTCA-CAGTTTAATCCCGG
1 TCATTTTCATTTTTTTGACTCATGA-TTTAATCCTGG
* *
5205982 TCATTTTCA-TTTTTTAACTCATGATTTAAT-TTCGG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
** * * ** *
5206017 TCATCTTTCA-TTCCTTGACAT-GTGATTTAGTTTTGA
1 TCAT-TTTCATTTTTTTGAC-TCATGATTTAATCCTGG
** * * * *
5206053 TGGTTTTGA-TTTTCTGACTCATGATTT-ATTCTCAG
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT-GG
*
5206088 T-AGTTTCCA-TTTTTTGACTCATGATTTAATCCTGG
1 TCA-TTTTCATTTTTTTGACTCATGATTTAATCCTGG
* *
5206123 TCATTTTCATTTTTTTTATTCATGATTTAATCCT
1 TCATTTTCATTTTTTTGACTCATGATTTAATCCT
5206157 TGTTGTTTTC
Statistics
Matches: 568, Mismatches: 158, Indels: 111
0.68 0.19 0.13
Matches are distributed among these distances:
32 2 0.00
33 9 0.02
34 20 0.04
35 384 0.68
36 106 0.19
37 16 0.03
38 2 0.00
39 1 0.00
40 1 0.00
42 1 0.00
43 4 0.01
44 3 0.01
45 17 0.03
46 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (36 bp):
TCATTTTCATTTTTTTGACTCATGATTTAATCCTGG
Found at i:5206167 original size:141 final size:140
Alignment explanation
Indices: 5205915--5206191 Score: 321
Period size: 141 Copynumber: 2.0 Consensus size: 140
5205905 ATCCCTCTCA
* * * *
5205915 TTTTCATTTTTTGACTCGTGATTTTTTCTCAGTCATTTTCATTTTTCGACTCACAGTTTAATCCC
1 TTTTCATTTTCTGACTCATGATTTATTCTCAGTCATTTCCATTTTTCGACTCACAGTTTAATCCC
5205980 GGTCATTTTCATTTTTTAACTCATGATTTAATTTCGGTCATCTTTCA-TTCCTTGACATGTGATT
66 GGTCATTTTCATTTTTTAACTCATGATTTAATTTC-GTCATCTTTCACTTCC-TGACATGTGATT
*
5206044 TAGTTTTGATGG
129 TAATTTTGATGG
* * *
5206056 TTTTGATTTTCTGACTCATGATTTATTCTCAGT-AGTTTCCATTTTTTGACTCA-TGATTTAATC
1 TTTTCATTTTCTGACTCATGATTTATTCTCAGTCA-TTTCCATTTTTCGACTCACAG-TTTAATC
* * * ** * *
5206119 CTGGTCATTTTCATTTTTTTTATTCATGATTTAATCCTT-GTTGT-TTTCACTTTCTGACTTGTG
64 CCGGTCATTTTCA-TTTTTTAACTCATGATTTAAT--TTCGTCATCTTTCACTTCCTGACATGTG
5206182 ATTTAATTTT
126 ATTTAATTTT
5206192 CTAACTTGTG
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
140 2 0.02
141 86 0.75
142 25 0.22
144 2 0.02
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.53
Consensus pattern (140 bp):
TTTTCATTTTCTGACTCATGATTTATTCTCAGTCATTTCCATTTTTCGACTCACAGTTTAATCCC
GGTCATTTTCATTTTTTAACTCATGATTTAATTTCGTCATCTTTCACTTCCTGACATGTGATTTA
ATTTTGATGG
Found at i:5206198 original size:20 final size:20
Alignment explanation
Indices: 5206169--5206211 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
5206159 TTGTTTTCAC
*
5206169 TTTCTGACTTGTGATTTAAT
1 TTTCTAACTTGTGATTTAAT
5206189 TTTCTAACTTGTGATTTAAT
1 TTTCTAACTTGTGATTTAAT
5206209 TTT
1 TTT
5206212 GGTTGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (20 bp):
TTTCTAACTTGTGATTTAAT
Found at i:5206288 original size:35 final size:35
Alignment explanation
Indices: 5206249--5207453 Score: 317
Period size: 35 Copynumber: 34.9 Consensus size: 35
5206239 CTAATCCCTC
* **
5206249 TCATTTTCATTTTCTGACTCGTGGTTTTTTCTC-A
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
*
5206283 GTCATTTTCATTTTCTGACTCATAGTTTAATCTCGA
1 -TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * * *
5206319 TCATTTTCTTTTTCTGACCCATGGTTTAA-CCCTTA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTC-GA
* * ** * *
5206354 TCATTTTTCTTTTTTTGACTGGTGGTTTGATC-CTGG
1 TCA-TTTTCATTTTCTGACTCATGGTTTAATCTC-GA
** * * *
5206390 TTGTTTTCATTTTTTGACT--T-GTTTAATCTGGC
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * ** **
5206422 TCATTTTCATTTTTTGACTTATGGCCTAATCGAGA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * *
5206457 TTATTTTCATTTTTTGACTCATGGTTTAATCATAG-
1 TCATTTTCATTTTCTGACTCATGGTTTAATC-TCGA
* * * * * * *
5206492 TCATTTTTATTTTTTGACCCGTGGTCTAA-CATTGG
1 TCATTTTCATTTTCTGACTCATGGTTTAATC-TCGA
* * * ** * *
5206527 TCGTTTTTCATTTTTTAACTTGTGGTTTAATCCCTA
1 TC-ATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* ** * * *
5206563 TCATTTTTC-TTTTTTGA-TGGGTAGTTTAATCCCTA
1 TCA-TTTTCATTTTCTGACT-CATGGTTTAATCTCGA
** * * *
5206598 TTGTTTTCATTTTTTGACTTATGGTTTAATC-CTGG
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTC-GA
* ** * *
5206633 TCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGG
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
** * * *
5206668 TTGTTTTCATTTTTTGACTAATGGTTTAATCCCCG-
1 TCATTTTCATTTTCTGACTCATGGTTTAAT-CTCGA
* ** * * *
5206703 TCGTTTTCATTTT-TCGACTCGCGATTTAATCACGG
1 TCATTTTCATTTTCT-GACTCATGGTTTAATCTCGA
* * * *
5206738 TCATTTTTATTTTTTTGACTCATAGTTTAATCTCGG
1 TCATTTTCA-TTTTCTGACTCATGGTTTAATCTCGA
** * * *
5206774 TTGTTCTTCATTTTTTGACTCATGTTTTAATCACGA
1 TCATT-TTCATTTTCTGACTCATGGTTTAATCTCGA
** * * * *
5206810 TCGCTTTCA-TTTCTTGACTCGTGACTTGAA-CCCGA
1 TCATTTTCATTTTC-TGACTCATG-GTTTAATCTCGA
* *** * *
5206845 CCGCATTCATTTTCTGACTCATGGTTTAATCCCAA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
5206880 TCATTTT--TCTTT-T---TCAT--TTT--T-T-GA
1 TCATTTTCAT-TTTCTGACTCATGGTTTAATCTCGA
* * * ** *
5206904 TCATTTTCATTTTCTAACTCGTAGCCTAAT-TCCA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * *
5206938 GTCATTTTTATTTTCTGGCTCATGGTTTAATC-CTGT
1 -TCATTTTCATTTTCTGACTCATGGTTTAATCTC-GA
* * * *
5206974 TCATTTT-TTTTTCTGA-ACAGTGGTTTAATCCCGG
1 TCATTTTCATTTTCTGACTCA-TGGTTTAATCTCGA
* * * * *
5207008 TTATTTCCATTTTCTCACT-ATGGTTTAGTCGTAG-
1 TCATTTTCATTTTCTGACTCATGGTTTAATC-TCGA
* * * * * *
5207042 TCATTTCCATTTTCTGGCTCGTGCTTTAATCTAGG
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* *
5207077 TCATTTT-TTTTTCTGACTCAAT-GATTAA--TC--
1 TCATTTTCATTTTCTGACTC-ATGGTTTAATCTCGA
* *
5207107 TCATTTTCATTTTTTGA--CATGTGATTTAATATCGA
1 TCATTTTCATTTTCTGACTCATG-G-TTTAATCTCGA
* * * * * *
5207142 TCATTTTCATTTCTTTGATTCATGATTTAATGATAGT
1 TCATTTTCATTT-TCTGACTCATGGTTTAAT-CTCGA
** * ** *
5207179 TGTTTTTCATTTTCTAACTTGTGATTTAATCTCGA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * * * *
5207214 TCGTTTTAATTTTTTGACTCACGATTTAATC-CTGA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTC-GA
* * *
5207249 TCATTTT-ATTTTTTGACTCGTGGTTTAATCTCGG
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
** ** * * *
5207283 TTGTTTTTGTTTTTTGACTCATGATTTAATTTCGA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
* * * * *
5207318 TCTTTTTCATTTTTTGACTTACGGTTTAAT-TCCCA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCT-CGA
* ** * *
5207353 TTACTTTT-ATTCCCTGACTCATGATTTAATC-CTGG
1 TCA-TTTTCATTTTCTGACTCATGGTTTAATCTC-GA
* * * * *
5207388 TCATTTTCGTTTTTCTTATTCATGATTTAATCCTTG-
1 TCATTTTC-ATTTTCTGACTCATGGTTTAAT-CTCGA
** * *
5207424 TTGTTTTCATTTTCTGACTCGTGATTTAAT
1 TCATTTTCATTTTCTGACTCATGGTTTAAT
5207454 TTTGGTTGTT
Statistics
Matches: 881, Mismatches: 215, Indels: 148
0.71 0.17 0.12
Matches are distributed among these distances:
24 8 0.01
25 3 0.00
26 3 0.00
28 5 0.01
29 4 0.00
30 12 0.01
31 12 0.01
32 26 0.03
33 9 0.01
34 127 0.14
35 483 0.55
36 164 0.19
37 21 0.02
38 4 0.00
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACTCATGGTTTAATCTCGA
Found at i:5206305 original size:18 final size:18
Alignment explanation
Indices: 5206248--5206305 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
5206238 TCTAATCCCT
5206248 CTCATTTTCATTTTCTGA
1 CTCATTTTCATTTTCTGA
* * *
5206266 CTCGTGGTT--TTTTCTCA
1 CTCAT-TTTCATTTTCTGA
*
5206283 GTCATTTTCATTTTCTGA
1 CTCATTTTCATTTTCTGA
5206301 CTCAT
1 CTCAT
5206306 AGTTTAATCT
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
16 2 0.07
17 10 0.34
18 15 0.52
19 2 0.07
ACGTcount: A:0.14, C:0.22, G:0.10, T:0.53
Consensus pattern (18 bp):
CTCATTTTCATTTTCTGA
Found at i:5206857 original size:107 final size:104
Alignment explanation
Indices: 5206637--5206875 Score: 243
Period size: 106 Copynumber: 2.3 Consensus size: 104
5206627 TCCTGGTCGT
** * * *
5206637 TTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCCC
1 TTTCATTTTCTGACTCATAGTTTAATCTCGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCAC
* * * *
5206702 GTCGTTTTCATTTTTCGACTCGCGATTTAATCACGGTCA
66 GTCGCTTTCATTTTTCGACTCGCGATTGAACCACCGTCA
* * * *
5206741 TTTTTATTTTTTTGACTCATAGTTTAATCTCGGTTGTTCTTCATTTTTTGACTCATGTTTTAAT-
1 -TTTCA-TTTTCTGACTCATAGTTTAATCTCGGTTGTT-TTCATTTTTTGACTAATGGTTTAATC
*
5206805 CACGATCGCTTTCATTTCTT-GACTCGTGACTTGAACCCGACCG-CA
63 CACG-TCGCTTTCATTT-TTCGACTCGCGA-TTGAA-CC-ACCGTCA
*
5206850 -TTCATTTTCTGACTCATGGTTTAATC
1 TTTCATTTTCTGACTCATAGTTTAATC
5206876 CCAATCATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
105 4 0.04
106 49 0.45
107 45 0.41
108 6 0.05
109 3 0.03
110 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.48
Consensus pattern (104 bp):
TTTCATTTTCTGACTCATAGTTTAATCTCGGTTGTTTTCATTTTTTGACTAATGGTTTAATCCAC
GTCGCTTTCATTTTTCGACTCGCGATTGAACCACCGTCA
Found at i:5207202 original size:72 final size:71
Alignment explanation
Indices: 5207110--5207243 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 71
5207100 ATTAATCTCA
* * * * *
5207110 TTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTTTGATTCATGATTTAATGA
1 TTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTAATTT-TTTGACTCACGATTTAATGA
5207175 TAGTTGT
65 TAGTTGT
* * *
5207182 TTTTCATTTTCTAACTTGTGATTTAATCTCGATCGTTTTAATTTTTTGACTCACGATTTAAT
1 TTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTAATTTTTTGACTCACGATTTAAT
5207244 CCTGATCATT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
71 16 0.30
72 38 0.70
ACGTcount: A:0.23, C:0.12, G:0.11, T:0.54
Consensus pattern (71 bp):
TTTTCATTTTCTAACATGTGATTTAATATCGATCATTTTAATTTTTTGACTCACGATTTAATGAT
AGTTGT
Found at i:5207280 original size:69 final size:69
Alignment explanation
Indices: 5207107--5207336 Score: 221
Period size: 69 Copynumber: 3.3 Consensus size: 69
5207097 ATGATTAATC
* * * *
5207107 TCATTTTCATTTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTTTGATTCATGATTTAA
1 TCATTTTCATTTTTTGAC-TGTGATTTAATCTCGATCGTTTTAATTT-TTTGACTCATGATTTAA
*
5207172 TGATAGT
64 T-ATAGA
** * * *
5207179 TGTTTTTCATTTTCTAACTTGTGATTTAATCTCGATCGTTTTAATTTTTTGACTCACGATTTAAT
1 TCATTTTCATTTTTTGAC-TGTGATTTAATCTCGATCGTTTTAATTTTTTGACTCATGATTTAAT
*
5207244 CCT-GA
65 -ATAGA
* * * **
5207249 TCATTTT-ATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTTTGACTCATGATTTAAT
1 TCATTTTCATTTTTTGACT-GTGATTTAATCTCGATCGTTTTAATTTTTTGACTCATGATTTAAT
* *
5207313 TTCGA
65 ATAGA
*
5207318 TCTTTTTCATTTTTTGACT
1 TCATTTTCATTTTTTGACT
5207337 TACGGTTTAA
Statistics
Matches: 130, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
68 2 0.02
69 55 0.42
70 17 0.13
71 17 0.13
72 39 0.30
ACGTcount: A:0.20, C:0.13, G:0.12, T:0.55
Consensus pattern (69 bp):
TCATTTTCATTTTTTGACTGTGATTTAATCTCGATCGTTTTAATTTTTTGACTCATGATTTAATA
TAGA
Found at i:5207755 original size:70 final size:70
Alignment explanation
Indices: 5207517--5208062 Score: 360
Period size: 70 Copynumber: 7.8 Consensus size: 70
5207507 TTGACTTATG
* ** ** * *
5207517 ATTTTCA-TTTCTGACTCGTGGTTTTTTCTCAGTCATTTTCATTTTTTGACCCATGGTTTAATCC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTCATTTTTTGACTCATGGTTTAATCC
*
5207581 TAATC
66 TAGTC
* * * * * ** **
5207586 GTTTTTCTTTTTTTGACTGGTGGTTTGATCTTGGTTGCTTTCATTTTTTGACTTGTGGTTTAAT-
1 -ATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTCATTTTTTGACTCATGGTTTAATC
* *
5207650 CTGGCTT
65 CTAG-TC
* * * *
5207657 ATTTTCATTTTTCGACTCATGGCTTAATC-GGGATTATTTTCAATTTTTGACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCTGGG-TTATTTTCATTTTTTGACTCATGGTTTAATC
*
5207721 ATAGTC
65 CTAGTC
* * *
5207727 ATTTTCATTTTTTGACCCGTGGTCTAATCAT-GGTCGT-TTTTCATTTTTT-ACTCGTGGTTTAA
1 ATTTTCATTTTTTGACTCGTGGTTTAATC-TGGGT--TATTTTCATTTTTTGACTCATGGTTTAA
5207789 TCCCTA-TC
63 T-CCTAGTC
* * * ** * * *
5207797 ATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCCGATCATTTTCATTTTTTGACTAATGGTTTAAT
1 A-TTTTCATTTTTTGACT-CGTGGTTTAATCTGGGTTATTTTCATTTTTTGACTCATGGTTTAAT
* *
5207861 -ATCGGTC
64 CCT-AGTC
* * * * *
5207868 GTTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTAATGGTTTAATCC
1 ATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTCATTTTTTGACTCATGGTTTAAT-C
5207933 CT-GTC
65 CTAGTC
* ** ** * ** *
5207938 GTTTTCATTTTTTGACTCACGGTTTAATCACGGTCATTTTCATTTTTTTGACTTGTGGTTCAAT-
1 ATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTCA-TTTTTTGACTCATGGTTTAATC
5208002 CTATGTC
65 CTA-GTC
* * * * * *
5208009 GTTCTTCATTTTTTGACTCATGTTTTAATCAT-GATTGTTTTCATTTCTTGACTC
1 ATT-TTCATTTTTTGACTCGTGGTTTAATC-TGGGTTATTTTCATTTTTTGACTC
5208063 GTGATTTGAA
Statistics
Matches: 369, Mismatches: 83, Indels: 47
0.74 0.17 0.09
Matches are distributed among these distances:
69 5 0.01
70 196 0.53
71 134 0.36
72 34 0.09
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (70 bp):
ATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTCATTTTTTGACTCATGGTTTAATCC
TAGTC
Done.