Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 35 of 109
Found at i:5340816 original size:106 final size:106
Alignment explanation
Indices: 5339744--5341039 Score: 349
Period size: 106 Copynumber: 12.3 Consensus size: 106
5339734 TTTTTAGATC
*** * **
5339744 GTTTTCATTTTTTGACTCGTGGTTTAATATTAATCATTTTCATTTTCTGACTCAAT-GTTTAAT-
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTC-ATGGTTTAATC
* * * * *
5339807 CTCGGTCG-TTTTCCTTTTTCTGGCTAGTGGTTTAAT-CTCGGTC
65 CT-GATCGTTTTTCATTTTT-TGACTCGTGGTTTAATCCT-GGTT
* * *** * * * *
5339850 ATTTTCATTTTCTGACTCGTGGTTTAATC-CTTATCGTTTTCATTTTTTGACT-AGTGATTTAAT
1 GTTTTCATTTTTTGACTCACAGTTTAATCTC-GATCATTTTCATTTTCTGACTCA-TGGTTTAAT
* * * * * * *
5339913 CCCGATCATTTTTTA-TTTCTGACTCGTGATTTAA-CCTTAGTC
64 CCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCC-TGGTT
* * * * * *
5339955 GTTGTCATTTTCTTGACTCA-TGATTTAATCCCGA-CTATTTTCA-TTTCTTAACTCACGATTTA
1 GTTTTCATTTT-TTGACTCACAG-TTTAATCTCGATC-ATTTTCATTTTC-TGACTCATGGTTTA
* ** * * * * *
5340017 AACCCAATTG-TATTCAGTTTTTGACTCGTGGTTTAATCTTGGTC
62 ATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* * * * * *
5340061 GTTTTCATTTTTTGACTCAC-GATTTAATCTCGATCTTTTTTATTTTCTAACTCGTAGTTTAATA
1 GTTTTCATTTTTTGACTCACAG-TTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATC
* * *** * * *
5340125 C-AAGTC-ATTTTCATTTTTTGACTCACAGTTTAATCCCGATC
65 CTGA-TCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* *** * * * * * *
5340166 ATTTTCA-TTTTTGAACT-TGTGATTTAATTTTGGTCATTTTCGTTCTCT-A-ACATGTGATTTA
1 GTTTTCATTTTTTG-ACTCACAG-TTTAATCTCGATCATTTTCATTTTCTGACTCATG-G-TTTA
* * * * * * * * * *
5340227 GT-TTCAGT-GGTTTTGATTTTTTGACTCATGATTT-ATTCTCAGTA
62 ATCCTGA-TCGTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
* *** * * * *
5340271 GTTTTTGA-TTTTTGACATGTGA-TTTAATATCGATAATTTTCATTTCTCTGACTCATGATATAA
1 G-TTTTCATTTTTTGAC-TCACAGTTTAATCTCGATCATTTTCATTT-TCTGACTCATGGTTTAA
* * * * * * * * *
5340334 TGAC-GGTTGTTTTTAATTTTTTGACTTGTGATGTAAT-CTCGATG
63 T-CCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
* * * *
5340378 GTTTTCATTTTTTTACTCAC-GATTTAATC-CTGATCATTTTCATTTTTTGGCTCGTGGTTTAAT
1 GTTTTCATTTTTTGACTCACAG-TTTAATCTC-GATCATTTTCATTTTCTGACTCATGGTTTAAT
* * ** * * ** * ** *
5340441 -CTCGGTTG-TTTTGGTTTTCTAACTCACGATTTAATTTTGGTC
64 CCT-GATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* * * * * * *
5340483 ATTTTCATTTTTTGACTTACGGTTTAAT-TCCCATCGTTTT--TTTTCGTTGACCCATGATTTAA
1 GTTTTCATTTTTTGACTCACAGTTTAATCT-CGATCATTTTCATTTTC--TGACTCATGGTTTAA
* * *
5340545 TCCT-AGTC-ATTTTCATTTTTTTG-CTTCGTGATTTAATCCTTGTT
63 TCCTGA-TCGTTTTTCA-TTTTTTGAC-TCGTGGTTTAATCCTGGTT
** * * ** * * * *
5340589 GTTTTCATTTTTTGACTC-GTGATTTAAT-TGTGGTTGTTTTCATTATCTAAGACGC--GATCTA
1 GTTTTCATTTTTTGACTCACAG-TTTAATCT-CGATCATTTTCATTTTCT--GACTCATGGTTTA
* * * * *
5340650 AT-C--ACTCGCATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTA
62 ATCCTGA-TCG-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
* * * *
5340694 ATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCC
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5340759 TGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTT
66 TGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* ** * * * * * *
5340800 GTTTCCATTTTTTGACTTGCAGTTTAATTTGGCTCGTTTTCATTTTCTGACTCATGGCTTAATCA
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5340865 GGAT--TATTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCAT
66 TGATCGT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGGT--T
* * * * * **
5340907 -TTTTCTTTTTTTCA-TTAGTAGTTTAATC-CGAATCATTTTAATTTTCTGACTGGTGGTTTAAT
1 GTTTTCATTTTTTGACTCA-CAGTTTAATCTCG-ATCATTTTCATTTTCTGACTCATGGTTTAAT
* *
5340969 CCTTG-TCG-TTTTCATTTTCTGACTTGTGGTTTAAT-CTGGGTT
64 CC-TGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
*
5341011 GTTTTCATTTTTTGACTCACGGTTTAATC
1 GTTTTCATTTTTTGACTCACAGTTTAATC
5341040 CCCATCGTTT
Statistics
Matches: 877, Mismatches: 229, Indels: 169
0.69 0.18 0.13
Matches are distributed among these distances:
103 10 0.01
104 26 0.03
105 354 0.40
106 400 0.46
107 72 0.08
108 15 0.02
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (106 bp):
GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
TGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
Found at i:5340816 original size:141 final size:141
Alignment explanation
Indices: 5340664--5340918 Score: 318
Period size: 141 Copynumber: 1.8 Consensus size: 141
5340654 CTCGCATTTT
** * *
5340664 CATTTTATGACTCGTGGTTT-ATTCTCAG-TAATTTTCATTTTCTGACTCATAGTTTAATCTCGA
1 CATTTTATGACTCGCAGTTTAATT-T-AGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGA
*
5340727 TCATTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTA
64 TCATTTTCATTTTCTGACCCATGGTTTAATCCCT-ATCATTTTTCTTTTTTTGACTGGTGGTTTA
5340791 ATCCTGGTTGTTTC
128 ATCCTGGTTGTTTC
* * * ** * * *
5340805 CATTTTTTGACTTGCAGTTTAATTTGGCTCGTTTTCATTTTCTGACTCATGGCTTAATCAGGATT
1 CATTTTATGACTCGCAGTTTAATTTAGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGATC
* * *
5340870 ATTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTT
66 ATTTTCATTTTCTGACCCATGGTTTAATCCCTATCATTTTTCTTTTTTT
5340919 CATTAGTAGT
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
140 1 0.01
141 88 0.93
142 6 0.06
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (141 bp):
CATTTTATGACTCGCAGTTTAATTTAGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGATC
ATTTTCATTTTCTGACCCATGGTTTAATCCCTATCATTTTTCTTTTTTTGACTGGTGGTTTAATC
CTGGTTGTTTC
Found at i:5340931 original size:141 final size:140
Alignment explanation
Indices: 5340695--5341050 Score: 394
Period size: 141 Copynumber: 2.5 Consensus size: 140
5340685 TTCTCAGTAA
* * * * *
5340695 TTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAAT-CC
1 TTTTCATTTTCTGACTCATGGTTTAATCTGGATTATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * ** * * *
5340759 TGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTG-GTTGTTTCCATTTTTTGACTTGCAGT
66 T-ATCGTTTTTCTTTTTTTCACTAGTAGTTTAATCC-GAATCATTTCAATTTTCTGACTGGCAGT
5340823 TTAAT-TTGGCTCG
129 TTAATCTT-G-TCG
* * *
5340836 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCGTGGTTTAATCCC
1 TTTTCATTTTCTGACTCATGGTTTAATCTGGATTATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * **
5340901 TATCATTTTTCTTTTTTTCATTAGTAGTTTAATCCGAATCATTTTAATTTTCTGACTGGTGGTTT
66 TATCGTTTTTCTTTTTTTCACTAGTAGTTTAATCCGAATCATTTCAATTTTCTGACTGGCAGTTT
5340966 AATCCTTGTCG
131 AAT-CTTGTCG
** * * *
5340977 TTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCACGGTTTAATCCC
1 TTTTCATTTTCTGACTCATGGTTTAATCTGGATTATTTTCATTTTTTGACTCATGGTTTAATCCC
*
5341042 CATCGTTTT
66 TATCGTTTT
5341051 GGTCTTCCAA
Statistics
Matches: 179, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
140 1 0.01
141 172 0.96
142 4 0.02
143 2 0.01
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (140 bp):
TTTTCATTTTCTGACTCATGGTTTAATCTGGATTATTTTCATTTTTTGACTCATGGTTTAATCCC
TATCGTTTTTCTTTTTTTCACTAGTAGTTTAATCCGAATCATTTCAATTTTCTGACTGGCAGTTT
AATCTTGTCG
Found at i:5341085 original size:176 final size:176
Alignment explanation
Indices: 5340772--5341094 Score: 369
Period size: 176 Copynumber: 1.8 Consensus size: 176
5340762 TCGTTTTTCT
* * * *
5340772 TTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGCAGTTTAATTTGGCTCGT
1 TTTTCTGACTGGTGGTTTAATCCTGGTCGTTTCCATTTTCTGACTTGCAGTTTAATCTGGCTCGT
* ** * * *** ** *
5340837 TTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCGTGGTTTAATCCCT
66 TTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTCCAACTCACGGTTTAATCCCG
5340902 ATCATTTTTC-TTTTTTTCATTAGTAGTTTAATCCGAATCATTTTAA
131 ATCA-TTTTCATTTTTTTCATTAGTAGTTTAATCCGAATCATTTTAA
* * ** * *
5340948 TTTTCTGACTGGTGGTTTAATCCTTGTCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGT
1 TTTTCTGACTGGTGGTTTAATCCTGGTCGTTTCCATTTTCTGACTTGCAGTTTAATCTGGCTCGT
* * * * ** *
5341013 TTTCATTTTTTGACTCACGGTTTAATCCCCATCGTTTTGGTCTTCCAACTCACGGTTTAATCGCG
66 TTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTCCAACTCACGGTTTAATCCCG
*
5341078 GTCATTTTCATTTTTTT
131 ATCATTTTCATTTTTTT
5341095 GACTTACGAT
Statistics
Matches: 117, Mismatches: 29, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
175 5 0.04
176 112 0.96
ACGTcount: A:0.16, C:0.17, G:0.16, T:0.51
Consensus pattern (176 bp):
TTTTCTGACTGGTGGTTTAATCCTGGTCGTTTCCATTTTCTGACTTGCAGTTTAATCTGGCTCGT
TTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTCCAACTCACGGTTTAATCCCG
ATCATTTTCATTTTTTTCATTAGTAGTTTAATCCGAATCATTTTAA
Found at i:5341297 original size:85 final size:86
Alignment explanation
Indices: 5341193--5341350 Score: 219
Period size: 85 Copynumber: 1.8 Consensus size: 86
5341183 CCAATCGCAT
* **
5341193 TCATTTTCTGACTCATGGTTTAATCCCAATCATTTTTTT-TCATTTTTTTATCGTTCTCATGTTC
1 TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTTTCTCATTTTTCGATCGTTCTCATGTTC
5341257 TAACTCGTAGCTTAATTCTAG
66 TAACTCGTAGCTTAATTCTAG
** * * * *
5341278 TCATTTTCTAACTTGTGGTTTAGTCCCGATCATTTTTTTCTCATTTTTCGATCGTTTTCATTTTC
1 TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTTTCTCATTTTTCGATCGTTCTCATGTTC
*
5341343 TGACTCGT
66 TAACTCGT
5341351 GGTTTAATCC
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 34 0.55
86 28 0.45
ACGTcount: A:0.17, C:0.20, G:0.11, T:0.52
Consensus pattern (86 bp):
TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTTTTCTCATTTTTCGATCGTTCTCATGTTC
TAACTCGTAGCTTAATTCTAG
Found at i:5341371 original size:86 final size:85
Alignment explanation
Indices: 5341194--5341364 Score: 198
Period size: 86 Copynumber: 2.0 Consensus size: 85
5341184 CAATCGCATT
* ** **
5341194 CATTTTCTGACTCATGGTTTAATCCCAATCATTTTTTTTCATTTTTTTATCGTTCTCATGTTCTA
1 CATTTTCTAACTTGTGGTTTAATCCCAATCATTTTTTTTCATTTTTCGATCGTTCTCATGTTCTA
* **
5341259 ACTCGTAGCTTAATTCTAGT
66 ACTCGTAGCTTAATCCTAAA
* * * *
5341279 CATTTTCTAACTTGTGGTTTAGTCCCGATCATTTTTTTCTCATTTTTCGATCGTTTTCATTTTCT
1 CATTTTCTAACTTGTGGTTTAATCCCAATCATTTTTTT-TCATTTTTCGATCGTTCTCATGTTCT
* * *
5341344 GACTCGTGGTTTAATCCTAAA
65 AACTCGTAGCTTAATCCTAAA
5341365 GGTTTTCATT
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
85 33 0.47
86 37 0.53
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.50
Consensus pattern (85 bp):
CATTTTCTAACTTGTGGTTTAATCCCAATCATTTTTTTTCATTTTTCGATCGTTCTCATGTTCTA
ACTCGTAGCTTAATCCTAAA
Found at i:5342362 original size:211 final size:211
Alignment explanation
Indices: 5341996--5342509 Score: 563
Period size: 211 Copynumber: 2.4 Consensus size: 211
5341986 TTAATCTCGA
* * *
5341996 TCATTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTTGACTGGTGGTTT
1 TCATTTTCATTTTTTGACTCATGGTTTAATCCCT-ATCGTTTTTC-TTTTTTTGACTGGTGTTTT
* * * *
5342060 AATCCTGGT-TTTTTCCCTTTTTTGACTTGCGATTTAATCCGGCTCGTTTTAATTTTCTGACTTA
64 AATCCTGATCGTTTT-CATTTTTTGACTTGCGATTTAACCCGGCTCGTTTTAATTTTCTGACTTA
* * * * *
5342124 TGGCTTAATCAGGATTATTTTCATTTTTTTACTCATGGTTTAAT-CATAGTCATTTTCATTTTTT
128 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCACGGTTTAATCCAT-GCCATTTTCATCTTTC
5342188 GACTAACGGTCTAATCGTGG
192 GACTAACGGTCTAATCGTGG
* * * *
5342208 TCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-TGGTATTTTA
1 T-CATTTTCATTTTTTGACTCATGGTTTAATCCCTATCGTTTTTCTTTTTTTGACTGGTGTTTTA
** * * *
5342272 ATCCCAATCGTTTTCATTTTTTGACTTGTCG-TTTAACCCCGGC-CTTTTTTATTTTCTGACTTG
65 ATCCTGATCGTTTTCATTTTTTGACTTG-CGATTTAA-CCCGGCTCGTTTTAATTTTCTGACTTA
* * * * *
5342335 TGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCACGGTTTAATCCATGCCCTTTTCATCTTTCG
128 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCACGGTTTAATCCATGCCATTTTCATCTTTCG
* * * *
5342400 CCTCATGGTTTAATCGTGG
193 ACTAACGGTCTAATCGTGG
* * * * * * *
5342419 TCATTTTCATTTCTTTGACTTATGATTTAATCTCGATCGTTCTTCATTTTTTGACTCGTGTTTTA
1 TCATTTTCATTT-TTTGACTCATGGTTTAATCCCTATCGTTTTTCTTTTTTTGACTGGTGTTTTA
* *
5342484 ATCATGATCGTTTTCATTTCTTGACT
65 ATCCTGATCGTTTTCATTTTTTGACT
5342510 CTTGATTTAA
Statistics
Matches: 249, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
210 10 0.04
211 148 0.59
212 54 0.22
213 34 0.14
214 3 0.01
ACGTcount: A:0.16, C:0.18, G:0.14, T:0.51
Consensus pattern (211 bp):
TCATTTTCATTTTTTGACTCATGGTTTAATCCCTATCGTTTTTCTTTTTTTGACTGGTGTTTTAA
TCCTGATCGTTTTCATTTTTTGACTTGCGATTTAACCCGGCTCGTTTTAATTTTCTGACTTATGG
CTTAATCAGGATTATTTTCATTTTTTGACTCACGGTTTAATCCATGCCATTTTCATCTTTCGACT
AACGGTCTAATCGTGG
Found at i:5343148 original size:69 final size:70
Alignment explanation
Indices: 5342995--5343200 Score: 190
Period size: 69 Copynumber: 2.9 Consensus size: 70
5342985 ATATCAATCG
* * * * * * * *
5342995 TTTTCATTTTCTAACTCAATG-TTTAATCTCGGTCATTTTCCTTTTTCTGGCT-AGTGGTTTAAT
1 TTTTCATTTTCTGACTC-ATGATTTAATCTCAGTCGTTATCATTTCT-TGACTCA-TGATTTAAT
5343058 CCCGGTCA
63 CCCGGTCA
* * * * *
5343066 TTTTCATTTTCTGACTCGTGGTTTAATCCTTA-TCGTTTTCATTTTTTGACT-A-GTATTTAATC
1 TTTTCATTTTCTGACTCATGATTTAAT-CTCAGTCGTTATCATTTCTTGACTCATG-ATTTAATC
5343128 CCGGTCA
64 CCGGTCA
*
5343135 TTTT-TTATTTCTGACTCATGATTTAATCTCAGTCGTTATCATTTCTTGACTCATGATTTAATCC
1 TTTTCAT-TTTCTGACTCATGATTTAATCTCAGTCGTTATCATTTCTTGACTCATGATTTAATCC
5343199 CG
65 CG
5343201 ATTGTTTTCA
Statistics
Matches: 114, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
68 5 0.04
69 53 0.46
70 19 0.17
71 35 0.31
72 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (70 bp):
TTTTCATTTTCTGACTCATGATTTAATCTCAGTCGTTATCATTTCTTGACTCATGATTTAATCCC
GGTCA
Found at i:5343185 original size:104 final size:105
Alignment explanation
Indices: 5342991--5343213 Score: 238
Period size: 104 Copynumber: 2.1 Consensus size: 105
5342981 TTTAATATCA
* * * *
5342991 ATCGTTTTCATTTTCTAACTCAATGTTTAATCTCGGTCATTTTCCTTTTTCTGGCTAGTGGTTTA
1 ATCGTTTTCATTTTCTAACTCAATATTTAATCCCGGTCATTTT-CTTTTTCTGACTAGTGATTTA
* * * * **
5343056 ATCCCGGTCATTTTCATTTTCTGACTCGTGGTTTAATCCTT
65 ATCCCAGTCATTATCATTTTCTGACTCATGATTTAATCCCG
* * *
5343097 ATCGTTTTCATTTTTTGACT-AGTATTTAATCCCGGTCATTTT-TTATTTCTGACTCA-TGATTT
1 ATCGTTTTCATTTTCTAACTCAATATTTAATCCCGGTCATTTTCTT-TTTCTGACT-AGTGATTT
* *
5343159 AATCTCAGTCGTTATCA-TTTCTTGACTCATGATTTAATCCCG
64 AATCCCAGTCATTATCATTTTC-TGACTCATGATTTAATCCCG
*
5343201 ATTGTTTTCATTT
1 ATCGTTTTCATTT
5343214 CTTAACTTAC
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
103 6 0.06
104 54 0.55
105 20 0.20
106 18 0.18
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (105 bp):
ATCGTTTTCATTTTCTAACTCAATATTTAATCCCGGTCATTTTCTTTTTCTGACTAGTGATTTAA
TCCCAGTCATTATCATTTTCTGACTCATGATTTAATCCCG
Found at i:5343961 original size:176 final size:176
Alignment explanation
Indices: 5343779--5344220 Score: 398
Period size: 176 Copynumber: 2.5 Consensus size: 176
5343769 CTTTTTTTCG
** *
5343779 CTGACTCATAATTTAATCCTAGTCATTTTCATTTTTTTGATTCATGATTTAATCCTTG-TTGTTT
1 CTGACTCATAATTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCC-TGATCGTTT
* * *
5343843 TT-ATTTTCTGACTCGTGATTTAAAT-TTGGTTGTTTTCATTATCTAAAATGCGGTCTAATC-CC
65 TTCATTTTCTGACTCGTGATTT-AATCCTGGTTGTTTCCATTATCTAAAATGCGGTCTAATCAAC
* *
5343905 TCGCATTTTCATTTTATGACTCATGGTTTATTCTCA-G-TAATTTTCATTTT
129 TCG--TTTTCATTTTATGACTCATGGCTTA--ATCAGGATAATTTTCATTTT
* * * * *
5343955 CTGACTCATACTTTAAT-CTCAATCTTTTTTA-TTTTTTGACCCATGGTTTAATCCTGATCGTTT
1 CTGACTCATAATTTAATCCT-AGTCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTT
* * * * * * * * ** *
5344018 TTCTTTTTTTGATTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTAAC
65 TTCATTTTCTGACTCGTGATTTAATCCTGGTTGTTTCCATTATCTAAAATGCGGTCTAATC-AAC
* *
5344083 TCGTTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTT
129 TCGTTTTCATTTTATGACTCATGGCTTAATCAGGATAATTTTCATTTT
* ** * * * * * * * *
5344131 TTGACTCATGGTTTAATCATAGTCATTTTCA-TTTTTTGACTCGTGGTCTAATCGTGGTCCTTTT
1 CTGACTCATAATTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTTT
* *
5344195 TCATTTTTTGACTCGTGGTTTAATCC
66 TCATTTTCTGACTCGTGATTTAATCC
5344221 CTATCATTTT
Statistics
Matches: 215, Mismatches: 42, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
174 5 0.02
175 33 0.15
176 172 0.80
177 1 0.00
178 4 0.02
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (176 bp):
CTGACTCATAATTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTTT
TCATTTTCTGACTCGTGATTTAATCCTGGTTGTTTCCATTATCTAAAATGCGGTCTAATCAACTC
GTTTTCATTTTATGACTCATGGCTTAATCAGGATAATTTTCATTTT
Found at i:5344374 original size:212 final size:212
Alignment explanation
Indices: 5343978--5344360 Score: 482
Period size: 212 Copynumber: 1.8 Consensus size: 212
5343968 TAATCTCAAT
* * ** * *
5343978 CTTTTTTATTTTTTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGATTGGTGGTTTAAT
1 CTTTTTCATTTTTTGACCCATGGTTTAATCCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAAT
*** ** * *
5344043 CCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTTTGACTCATGGC
66 CCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTCTGACTCATGGC
* * *
5344108 TTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTC
131 TTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAATCACAGTCATTTTCATTTTTTGACTC
5344173 GTGGTCTAATCGTGGTC
196 GTGGTCTAATCGTGGTC
* *
5344190 CTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCCCTTTTTCATTGGTAGTTTAA
1 CTTTTTCATTTTTTGACCCATGGTTTAAT-CCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAA
* * ** **
5344254 TCCCAATCATTTTCATTTTCTGACTTGTGGTTTAATCCTGGC-CGTTTTCATTTTCTGACTTGTG
65 TCCCAATCATTTCCATTTTCTGACTTGCGGTTTAAT-CTAACTCGTTTTCATTTTCTGACTCATG
* * * *
5344318 GTTTAATCTGGGTTGTTTTCATTTTTTGACTCACGATTTAATC
129 GCTTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAATC
5344361 CCCATCGTTT
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
212 136 0.96
213 6 0.04
ACGTcount: A:0.16, C:0.17, G:0.15, T:0.52
Consensus pattern (212 bp):
CTTTTTCATTTTTTGACCCATGGTTTAATCCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAAT
CCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTCTGACTCATGGC
TTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAATCACAGTCATTTTCATTTTTTGACTC
GTGGTCTAATCGTGGTC
Found at i:5344397 original size:212 final size:212
Alignment explanation
Indices: 5343978--5344422 Score: 473
Period size: 212 Copynumber: 2.1 Consensus size: 212
5343968 TAATCTCAAT
* * * ** * *
5343978 CTTTTTTATTTTTTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGATTGGTGGTTTAAT
1 CTTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAAT
*** ** * *
5344043 CCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTTTGACTCATGGC
66 CCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTCTGACTCATGGC
* * * * ***
5344108 TTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTC
131 TTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAATCACAGTCATTTTCATCTTCCAACTC
**
5344173 GTGGTCTAATCGTGGTC
196 ACGGTCTAATCGTGGTC
*
5344190 CTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCCCTTTTTCATTGGTAGTTTAA
1 CTTTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAA
* * ** **
5344254 TCCCAATCATTTTCATTTTCTGACTTGTGGTTTAATCCTGGC-CGTTTTCATTTTCTGACTTGTG
65 TCCCAATCATTTCCATTTTCTGACTTGCGGTTTAAT-CTAACTCGTTTTCATTTTCTGACTCATG
* * * * * *
5344318 GTTTAATCTGGGTTGTTTTCATTTTTTGACTCACGATTTAATCCCCA-TCGTTTTCATCTTCCAA
129 GCTTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAAT-CACAGTCATTTTCATCTTCCAA
*
5344382 CTCACGGTTTAATCGTGGTC
193 CTCACGGTCTAATCGTGGTC
*
5344402 ATTAATTTCATTTTTTTGACT
1 CTT--TTTCA-TTTTTTGACT
5344423 TACGATTTAA
Statistics
Matches: 189, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
212 166 0.88
213 8 0.04
214 5 0.03
215 10 0.05
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.51
Consensus pattern (212 bp):
CTTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTTCCCTTTTTCATTGGTAGTTTAAT
CCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCTAACTCGTTTTCATTTTCTGACTCATGGC
TTAATCAGGATTATTTTCATTTTTTGACTCACGATTTAATCACAGTCATTTTCATCTTCCAACTC
ACGGTCTAATCGTGGTC
Found at i:5345302 original size:105 final size:104
Alignment explanation
Indices: 5342957--5352729 Score: 719
Period size: 105 Copynumber: 93.6 Consensus size: 104
5342947 CATTTTTTGA
* * ** * * * *
5342957 TCGTTTTCATTTTCTAACTTGTGGTTTAATATC-AATCGTTTTCATTTTCTAACTCAATG-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTC-GTGATTTA
* * * * * * *
5343020 ATCTCGGTCATTTTCCTTTTTCTGGCTAGTGGTTTAATCCCGG
64 ATCCCGATCA-TTTCATTTTT-TGACTCGTGATTTAATCTCGG
* * * * *
5343063 TCATTTTCATTTTCTGACTCGTGGTTTAATC-CTTATCGTTTTCATTTTTTGACTAGT-ATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * * *
5343126 TCCCGGTCATTT-TTTATTTCTGACTCATGATTTAATCTCAG
65 TCCCGATCATTTCATT-TTT-TGACTCGTGATTTAATCTCGG
* * * * * * ***
5343167 TCGTTATCATTTCTTGACTCATGATTTAATC-CCGATTGTTTTCATTTCTTAACTTACGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTTAA
* ** * *
5343231 ACCCGATTGTATTCATTTTTTGACTCGTGGTTTAATCCTC-A
65 TCCCGATCAT-TTCATTTTTTGACTCGTGATTTAAT-CTCGG
* * * * * * *
5343272 TCGTTTTTATTTTTTCACTCATGGTTTAATCTC-GGTCATTTTTATTTTCTGACTCGCGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
* * * * * * *
5343336 TCTCGATCTTTTTTATTTTCTAACTTGT-AGTTTAATAC-GGG
65 TCCCGATC-ATTTCATTTTTTGACTCGTGA-TTTAAT-CTCGG
* * * * * *
5343377 TCATTTTCATTTTTTGACTAATAGTTTAATC-CCGATCAG-TTTCATTTTTTTAACTTGTGATTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATC-GTTTTCA--TTTTTGACTCGTGATTT
** * * * * * * *
5343440 AATTTCGATCACTTTTCGTTCTCTAACAT-GTGATTTAGTTTCGA
63 AATCCCGATCA--TTTCATTTTTTGAC-TCGTGATTTAATCTCGG
* * * * * * *
5343484 TGGTTTTGATTTTCTGACTCATGATTTATTCTCAG-TAGTTTTCAATTTTTGACAT-GTGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTTTGAC-TCGTGATTTA
** * * **
5343547 ATTTCGATCATTTTCATTTCTCTGACTCATGATTTAATGACGG
64 ATCCCGATCA-TTTCATTT-TTTGACTCGTGATTTAATCTCGG
* ** * * * ** *
5343590 TTGTTTTTCATTTTTTGACTTGTGATGTAATCTC-GATGGTTTTCATTTTTTGACTCACGGTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
** * *
5343654 ATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGA
64 ATCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCTCGG
* ** * * * * * * * * ***
5343696 TTGTTTTGGTTTTCTAACTCACGATTAAAT-TTTGGTCCTTTTCATTTTTTGACTTACGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * * *
5343760 TTCCC-ATCACTTT--TTTTCGCTGACTCATAATTTAATC-CTAG
65 -TCCCGATCA-TTTCATTTT--TTGACTCGTGATTTAATCTC-GG
* * * * *
5343801 TCATTTTCATTTTTTTGATTCATGATTTAATC-CTTG-TTGTTTTTATTTTCTGACTCGTGATTT
1 TCGTTTTCA-TTTTTTGACTCATGGTTTAATCTC-TGATCGTTTTCATTTT-TGACTCGTGATTT
*** * ** * ** * *
5343864 AAATTTGGTTGTTTTCATTATCTAAAATGCG-G-TCTAATCCCTC-G
63 -AATCCCGATCATTTCATT-TTTTGACT-CGTGATTTAAT--CTCGG
* * * * ** *
5343908 -CATTTTCATTTTATGACTCATGGTTTATTCTCAG-TAATTTTCATTTTCTGACTCAT-ACTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGA-TTTA
* * * * * * * *
5343970 ATCTCAATCTTTTTTATTTTTTGACCCATGGTTTAATC-CTGA
64 ATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * ** * * * * * *
5344012 TCGTTTTTCTTTTTTTGATTGGTGGTTTAATC-CTGGTTGTTTCCATTTTTTGACTTGCGGTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
** * * ** *
5344076 AT-CTAACTCGTTTTCATTTTTTGACTCATGGCTTAATC-AGG
64 ATCCCGA-TC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
** * * * *
5344117 ATTATTTTCATTTTTTGACTCATGGTTTAATC-AT-AGTCATTTTCATTTTTTGACTCGTGGTCT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGA-TCGTTTTCA-TTTTTGACTCGTGATTT
** * * * * **
5344180 AATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA
63 AATCCCGAT-C-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* ** * * ** * ** * * *
5344224 TCATTTTTCCCTTTTTCATTGGTAGTTTAATC-CCAATCATTTTCATTTTCTGACTTGTGGTTTA
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTA
* ** * * * * *
5344288 ATCCTGGCCGTTTTCATTTTCTGACTTGTGGTTTAATCTGGG
64 ATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * ** *** ** *
5344330 TTGTTTTCATTTTTTGACTCACGATTTAATC-CCCATCGTTTTCATCTTCCAACTCACGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCAT-TTTTGACTCGTGATTTAA
** * *** * *
5344394 TCGTGGTCATTAATTTCATTTTTTTGACTTACGATTTAATTTCGA
65 TC-CCG--A-TCATTTCA-TTTTTTGACTCGTGATTTAATCTCGG
* * * * * *
5344439 TCATTCTTCATTTTTTTGACTCGTGTTTTTATCAC-GATCATTTTCATTTCTTGACTCGTGATTT
1 TCGTT-TTCA-TTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTT
* * * * * * * **
5344503 AAACCCGATCAAATTCATTTTCTAACTCATGGTTTAATCCCAA
63 AATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * *
5344546 TCATTTT--TCTTTT---TCAT--TTT--T-T-T-ATCGTTCTCATTTTCTAACTCGT-AGCTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGA-TTTA
* * ** ** * *
5344598 AT-TCTAGTCATTTTCATTTCCTGACTCACGGTTTAATC-CTGT
64 ATCCCGA-TCA-TTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * *** ** * * * *
5344640 TCATTTTTTC-TTTTTCTAACTGGCGGTTTAATC-CCAATCATTTCCATTTTCTGACTCATGGTT
1 TC--GTTTTCATTTTT-TGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATT
** * * * * * *
5344703 TAAT-CTTAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATTTAGG
62 TAATCCCGA-TCATTT-CATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * *
5344747 TCATTTTC-TCTTTCTGACTCATTGTTTAATC-C-CACTTGTTTTCGTTTTCTGACTCGTGGTTT
1 TCGTTTTCAT-TTTTTGACTCATGGTTTAATCTCTGA-TCGTTTTCATTTT-TGACTCGTGATTT
* * ** * * *
5344809 AATCCAGGTTGTTTTTTATTTTTTGACTCGT-ATTTTAATCCCAG
63 AATCC-CGAT-CATTTCATTTTTTGACTCGTGA-TTTAATCTCGG
* * * * * * ** * * * *
5344853 TCATTTTCATTTCTTGACTCATGATTCAAACT-AG-TCGCATTCATTTTCTAACTCATGGTTTAG
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
* *
5344916 TCCCGATCATTT--TTTTTT---TC---ATTT--T-TTGA
65 TCCCGATCATTTCATTTTTTGACTCGTGATTTAATCTCGG
* ** * *
5344945 TCGTTTTCATTTTTTGACTCTTGGTTTAATC-CCAATCGTTTTCCTTTTCTGACTCAATG-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTC-GTGATTTA
* * * * *
5345008 ATCTCGATCGCTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGG
64 ATCCCGATC-ATTTCATTTTT-TGA-CTCGTGATTTAATCTCGG
* * * * * *
5345051 TCATTTTCATTTTCTGACTCATGGTTTAAT-TCTTATTGTTCTCACTTTTTGACTAGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* ** *
5345115 TCCCGGTCATTTTTTATTTTTGACTCGTGATTTAATCTCAG
65 TCCCGATCATTTCAT-TTTTTGACTCGTGATTTAATCTCGG
* * * * * *
5345156 TCGTTGTCATTTCTTGACTCATGATTTATTC-CTGATTGTTTTCATTTCTTAACTCGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTTAA
*
5345220 ACCCGATCATATTCATTTTTTGACTCGTGATTTAATC-CTGG
65 TCCCGATCAT-TTCATTTTTTGACTCGTGATTTAATCTC-GG
* *
5345261 TCGTTTTCATTTTTTGACTCATGGTTTAATCTC-GATCGTTTTCATTTTTTGACTCGCGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * * * * * *
5345325 TCTCGATCTTTTTTATTATCTAACTCGT-AGTTTAATAC-GGG
65 TCCCGATC-ATTTCATTTTTTGACTCGTGA-TTTAAT-CTCGG
* **** * * * * * *
5345366 TCATTTTCATTTTTTGACTCGCAATTTAATC-CCGGTCATTTTCATTTTTTAACTTGTGAGTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
** * * * *
5345430 TTTC-AGTCATTTTTCATTCTCTGACAT-GTGATTTAGTTTCGG
65 TCCCGA-TCA--TTTCATTTTTTGAC-TCGTGATTTAATCTCGG
* * * * * * * *
5345472 TGGTTTTGATTTTCTGACTCACGATTTATTCTCAG-TAGTTTTCGATTTTTGACAT-GTGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTTTGAC-TCGTGATTTA
** * * ** *
5345535 ATATCGATCGTTTTCATTTCTTTGACTCATGATTTAATGACGATT
64 ATCCCGATC-ATTTCATTT-TTTGACTCGTGATTTAATCTCG--G
** * ** * *
5345580 TTTTTTTCATTTTTTGATTTGTGATTTAATCTC-GATCGTTTTCTTTTTTTGACTTACG-G-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTTTGAC-T-CGTGATTT
* * * * *
5345642 AATCCTGATCATTTTCATTTTTTGGCTCATGGTTTAATCTTGG
63 AATCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * * ***
5345685 TTGTTTTTATTTTTTGACTCACGATTTAAT-TTTGGTCATTTTCATTTTTTGACTTACGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* ** *** *
5345749 TTCCC-ATCGCTTTTGTTCGCTGACTCATGATTTAATC-CTGG
65 -TCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * * * *
5345790 TCATTTTCATTTTTTTGATTCGTGATTTAATC-CTTG-TTGTTTTCATTTTTTGACTCGT-ATTT
1 TCGTTTTCA-TTTTTTGACTCATGGTTTAATCTC-TGATCGTTTTCA-TTTTTGACTCGTGATTT
*** * ** * * * ** * *
5345852 AATTTTGGTTGTTTCATTATCTAAAACGCGATCTAATCCCTC-G
63 AATCCCGATCATTTCATTTTTTGACTCGTGATTTAAT--CTCGG
* * * * * * * ** * *
5345895 T-ATTTTCATTTTATGACTCGTGATTTATTTTCAG-TAATTTTCATTTTCTAACTCAT-AGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGA-TTTA
** * * * *
5345957 ATCTTGATCATTTTCATTTTCTGAC-CAATGGTTTAATC-CTGA
64 ATCCCGATCA-TTTCATTTTTTGACTC-GTGATTTAATCTC-GG
* * * * **
5345999 TCGTTTTTCTTTTTTTGACT-AGTGGTTTAATC-CTGGTTGTTTCCATTTTTTGACTTAT-AGTT
1 TCG-TTTTCATTTTTTGACTCA-TGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGA-TT
** * * ** *
5346061 TAATGTAGCCCG-T--TTTCATTTTCAGACCCATGGCTTAATC-AGG
62 TAA--T--CCCGATCATTTCATTTTTTGACTCGTGATTTAATCTCGG
** * * * *
5346104 ATTATTTTCATTTTTTGACTCATGGTTTAATC-AT-AGTCGTTTTCATTTTTTAACTCGTGGTCT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGA-TCGTTTTCA-TTTTTGACTCGTGATTT
** * * * * **
5346167 AATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCGCTA
63 AATCCCGAT-C-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * ** * ** * **
5346211 TCATTTTTCATTTTTTCATTGGTAGTTTAATC-CCAATCGTTTTCATTTTTTGACTCATGGCTTA
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
* * * * *
5346275 ATCTCGATCGTTTTCATTTTTTGGCTCGCAGA-TTAATCTCGA
64 ATCCCGATC-ATTTCATTTTTTGACTCG-TGATTTAATCTCGG
* * * * * *** * *
5346317 TCTTTTTTATTTTTTAACTTATAGTTTAAT-AGAGGTCATTTTCATTTTTTGACTTACG-G-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGAC-T-CGTGATTT
* ** *** ** *
5346379 AATTCCC-ATCGCTTTTGTTCCCTGACTCACGATTTAATC-CTAG
63 AA-TCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * * * * *
5346422 TCATTTTTATTTTTCTAATTCATGATTTAATC-CTCG-TTGTTTTCATTTTCTGACTCGTGATTT
1 TCGTTTTCATTTTT-TGACTCATGGTTTAATCTCT-GATCGTTTTCATTTT-TGACTCGTGATTT
*** * ** * * * ** *
5346485 AATTTTGGTTGTTTTCATTATCTGAGAT-GCAATCTAATCCCTC-G
63 AA-TCCCGATCATTTCATTTTTTGA-CTCGTGATTTAAT--CTCGG
* ** * * * * * *
5346529 T-ATTTTCATTTTAAGACTCGTGGTTTATTTTCAG-TCATTTTCATTTTCTGACTCAT-AGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGA-TTTA
* * * * * *
5346591 ATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATC-CTGA
64 ATCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCTC-GG
* ** * * * * * * * *
5346633 TCGTTTTTCTTTTTTTGACTGGTGATTTAATC-CTGGTTGTTTCCATTTTTTAACTTGCGGTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
* * * * * * ** *
5346697 ATCCGGCTCGTTTTAATTTTCTGACTCATGGCTTAATC-AGG
64 ATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
** * * * * * *
5346738 ATTATTTTCATTTTTTGACTCGTGGTCTAATC-GTGGTCCTTTTTCATTTTTTGACTCGTGGTTT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGAT-CGTTTTCA-TTTTTGACTCGTGATTT
* * * * **
5346802 AATCCCTATCATTTTTCTTTTTTTGA-TGGT-ATTTTAATCCCAA
63 AATCCCGATCA--TTTCATTTTTTGACTCGTGA-TTTAATCTCGG
* ** ** * * * * *
5346845 TCATTTTCATTTTTTGACTTGTCATTTAATC-CCGACCGTTTTTATTTTCTGACTTGTGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
** * ** * ** * * *
5346909 TCTGGGTTGTTTTCACTTTTTGACTCACGGTTGAATC-CTTG
65 TC-CCGATCATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * ** * * * * **
5346950 TCCTTTTCATATTTCAACTCACGGTTTAATCGC-GGTCATTTTCATTTTTTTGACTTATGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA--TTTTTGACTCGTGATTTA
* * * * *
5347014 ATCACGATCATTTTCATTTCTTGACTCGTGATTTAAACCCGA
64 ATCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCTCGG
** * * ** * * * *
5347056 TCGCATTCATTTTCTGGCTCATGGTTTAATC-CCAATCATTTTTC-TTTTTCA-T--T-TTTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATC-GTTTTCATTTTTGACTCGTGATTTAA
* * * * *
5347115 T--CG-T--TCTCATTTTCTAACTCGT-AGCTTAAT-TCCAG
65 TCCCGATCATTTCATTTTTTGACTCGTGA-TTTAATCT-CGG
* * * * * *
5347150 TCATTTTCATTTTTTGACTCATAGTTTAATCTC-GATCATTTTCATTTTCTGACCCATGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
* * * * * *
5347214 TCCTGATCGTTTTTCTTTTTTTGATTGGTGCTTTAATC-CTGG
65 TCCCGATC--ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * * * * * * ** **
5347256 TTGTTTCCATTTTTTGACTTACGGTTTAATCT-GGCTCATTTTCATTTTCTGACTCACGGCTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
** * * * *
5347320 TCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AG
65 TCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATC-TCGG
* * * * * * * *
5347361 CCATTTTCATTTTTTGACTCGTGGTCTAATC-ATGGTCCTTTTTCATTTTTTGACTCGTGGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGAT-CGTTTTCA-TTTTTGACTCGTGATTTA
* * * * * **
5347425 ATCCCTATCATTTTTCTTTTTTTCA-TGGGGAGTTTAATC-CTAA
64 ATCCCGATCA--TTTCATTTTTTGACTCGTGA-TTTAATCTC-GG
* * * *** * * ** *
5347468 TGGTTTTCATTTTCTAACTTGCGGTTTAATCTATG-TTGTTTTCATTTTTTGACTCACGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * * * * * * *
5347532 TCCCCATCGTTTTCATCTTTCGACTCATGGTTTAATCGCGA
65 TCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * *
5347573 TCATTTTCATTTTTTCGACT--TGCGATTTAATCTC-GGTCGTTCTTCATTTTTTGACTCGTGTT
1 TCGTTTTCATTTTTT-GACTCATG-G-TTTAATCTCTGATCGTT-TTCA-TTTTTGACTCGTGAT
* * * * * *
5347635 TTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTAAACCCGA
61 TTAATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
** * ** * *
5347680 TCGCATTCATTTTCTGACT-ATGGTTTAATC-CCAATCATTTTTC-TTTTTCA-T--T--TTT--
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATC-GTTTTCATTTTTGACTCGTGATTTAA
* * * * **
5347735 T---TATCATTCTCATTTTCTAACTCGT-AGCTTAAT-TCCAA
65 TCCCGATCATT-TCATTTTTTGACTCGTGA-TTTAATCT-CGG
* ** * * * * * *
5347773 TCATTTTCATTTCCTGACTCATGGTTTAATC-CTGTTCATTTTTCTTTTTTTGATTGGTGGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATC-GTTTTC-ATTTTTGACTCGTGATTTA
* * * **
5347837 ATCCC-AGTCATTTCTATTTTCTGACTCATGGTTTAATCTTAG
64 ATCCCGA-TCATTTC-ATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * * * * *
5347879 TCGTTTCCA-TTTCTGGCTCGTGCTTTAATCT-AGGTCATTTT-TTTTTCTGACTCAATG-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTC-GTGATTTA
** * ** * * *
5347940 ATCCC-ACTTGTTTTCGTTTCCTGACTCATTG-TTTATTCTCAG
64 ATCCCGA--TCATTTCATTTTTTGACTC-GTGATTTAATCTCGG
* * * *
5347982 TAGTTTTCGA-TTTTTGA--CATGTGATTTAATATC-GATCATTTTCATTTCTCTGACTCATGAT
1 TCGTTTTC-ATTTTTTGACTCATG-G-TTTAATCTCTGATCGTTTTCATTT-T-TGACTCGTGAT
* * * ** * * *
5348043 TTAATAACTGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGA
61 TTAAT-CCCGAT-CATTTCATTTTTTGACTCGTGATTTAATCTCGG
* *
5348089 TCGTTTTCTTTTTTTGAACACA--GTTTAATCAT-T--T--TTTT-ATTTTTGACTCGTGATTTA
1 TCGTTTTCATTTTTTG-ACTCATGGTTTAATC-TCTGATCGTTTTCATTTTTGACTCGTGATTTA
* * * *
5348146 A-CCC-AGTCGTTGTCATTTCTTGACTCATGATTTAATCTCGA
64 ATCCCGA-TCATT-TCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * * * * *
5348187 TTGTTTTCATTTCTTAACTCACGATTTAAAC-CCGATTGTATTCATTTTTTGACTCGTGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * * ** * * **
5348251 TCCTGGTCGTTTTCATTTACTAACTCATGATTTAATCTCAA
65 TCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * * * * * **
5348292 TCTTTTTTATTTTCTAACTCGTAGTTTAAT-ACGGGTCATTTTCATTTTTTGACTC-ACAGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGA-TTTA
* * * *
5348355 ATCCCGATCATTTTCATTTTTTAACTTGTGATTTAATTTTGG
64 ATCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * ** * *
5348397 TCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTC-G-GGGGTTTCGATTTTCTGACTCATGAT
1 TC-GTTTTCATTTTTTGACTCATG-G-TTTAATCTCTGATCGTTTTC-ATTTT-TGACTCGTGAT
* * * * *
5348458 TTATTCTC-AGT-AGTTTTCAATTTTTGACAT-GTGATTTAATATCGA
61 TTAATCCCGA-TCA--TTTCATTTTTTGAC-TCGTGATTTAATCTCGG
* * * ** * * * *
5348503 TCATTTTCATTTCTCTGACTCATGATTTAA-CGATGGTTGTTTTAATTTTCTGACTTGTGATTTA
1 TCGTTTTCATTT-TTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTA
* * ** * * * *
5348567 ATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAGTCTTGA
64 ATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * *
5348609 TCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTTGTTTTTATTTTTTGACTCATGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
*** * * *** * **
5348673 TTTTGGTCATTTTCATTTTTTGGCTTACGATTT-ATTTCCCA
65 TCCCGATCA-TTTCATTTTTTGACTCGTGATTTAATCT-CGG
* * ** * * *
5348714 TCACTTTT-GTTCCTTGACTCATGATTTAATC-CT-AGTCATTTTCATTTTTTTGATTCGTGATT
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCTCTGA-TCGTTTTCA--TTTTTGACTCGTGATT
** * ** * * *
5348776 TAATCATTGTTGTTTTCATTTTTTGACTCGTGATATAATTTTGG
62 TAATC-CCGATCATTTCATTTTTTGACTCGTGATTTAATCTCGG
* ** * * * * *
5348820 TTGTTTTCATTATCTAAGACGC--GGTCTAATCCCTCAT-ATTTTCATTTTATGACTCGTGATTT
1 TCGTTTTCATT-T-TTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTT
* ** * * *
5348882 ATTCTTAGTCATTTTCATTTTCATTTTCTGACTCAT-AGTTTAATCTCGA
63 AATC-CCG--A---TCA-TTTCATTTTTTGACTCGTGA-TTTAATCTCGG
* * * * * ** * *
5348931 TCATTTTCATTTTCTAACCCATGGTTTAATC-CTGATCATTTTTTTTTTTTTACT-GTTGGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATC-GTTTTCATTTTTGACTCG-TGATTTA
* * ** * ** *
5348994 ATCCTGGTTGTTTCCATTTTTTAACTTATGGTTTAATCT-GG
64 ATCCCGATCATTT-CATTTTTTGACTCGTGATTTAATCTCGG
* ** ** * *
5349035 CTCGTTTTCATTTTTTGACTCATGGCTTAATC-AAGATTATTTTCATTTTTTGACTCATGGTTTA
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
** * * *
5349099 AT-CATAGTCATTTTCATTTTCTGACTCGTGGTCTAATCGT-GG
64 ATCCCGA-TCA-TTTCATTTTTTGACTCGTGATTTAATC-TCGG
* * * * *
5349141 TCTTTTTTCATTTTTTGACTCGTGGTTTAATC-CTTATC-ATTT--TTTTTGA-TGGCT-AGTTT
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTTTGACTCG-TGA-TTT
* ** * * * *
5349200 AATCCCAATTGTTTCCATTTTCTAACTGGTGGTTTAATC-CTGG
63 AATCCCGATCATTT-CATTTTTTGACTCGTGATTTAATCTC-GG
* ** * * * ** *
5349243 TCGTTTTCATTTTCTGACTTGTGGTTTAATCT-AGGTTGTTTTCATTTTTTGACTCACGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
* * ** ** * *
5349307 TCCCTG-TCCTTTTCATCTTCCGACTC-ACAGTTTAATCACAG
65 TCCC-GAT-CATTTCATTTTTTGACTCGTGA-TTTAATCTCGG
** * ** * * * *
5349348 TAATTTTTATTTTTTTGACTTGTGATTTAATCTC-GGTCGTTCTTCATTTTTTGACTTGTGTTTT
1 TCGTTTTCA-TTTTTTGACTCATGGTTTAATCTCTGATCGTT-TTCA-TTTTTGACTCGTGATTT
* * * * * *
5349412 AATCCACGATCGTTTTCA-TTCTTGACTCATGATTTAAACCCGA
63 AATCC-CGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
** * ** * * * *
5349455 TCGAATTCATTTTATGACTCAT-GTTTAATC-CCAATCATTTTC-TTTTT---TCAT-TTTTTAT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTTTGACTCGTGATTTAAT
* * * * * *
5349513 --TGTTC--TT-ATTTTCT-ACTGCGT-AGCTTATTC-CAG
66 CCCGATCATTTCATTTTTTGACT-CGTGA-TTTAATCTCGG
* * * * * *
5349546 TCATTTTCA-TTTTTGACTCACGGTTTAATC-CT-ATTCATTTTCCTTTTTCTGACTGGTGGTTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGA-TCGTTTT-CATTTT-TGACTCGTGATTT
* ** **
5349608 AATCTCGATCATTTTTTTTTTTGGACTC-T--TTTAATCTTAG
63 AATCCCGATCATTTCATTTTTT-GACTCGTGATTTAATCTCGG
* * * * * * * * * *
5349648 TCGTTTCCATTTTCT-AGCTCGTGCTTTCATCT-AGGTCATTTTCTTTTTCTGACTCAATG-TTT
1 TCGTTTTCATTTTTTGA-CTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTC-GTGATTT
* * * *
5349710 AATCCC-A-C-TTTCGTTTTCTGACTCATGGTTTAATC-CAGG
63 AATCCCGATCATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * * ** * * * * * *
5349749 TTGTTTTTTCATTTTTTAACTCGTACTTTAATCGCAG-TCATTTTTATTTCTTGACTCATGATTC
1 TCG--TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTT
* ** * * * * **
5349813 AAACTGGTTGCA-TTCATTTTCTAACTCGTGGTTTGGTC-C--
63 AATCCCGAT-CATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * *
5349852 -CG--ATCATTTTTT--TTCAT-TTTTAATCGT-T-TTC--ATT--TTTTTGACTCATGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATC-TCTGATCGTTTTCATTTTTGACTCGTGATTTAA
**** * *
5349905 TATTAATCATTTTCATTTTCTGACTCAATG-TTTAATCTCGG
65 TCCCGATCA-TTTCATTTTTTGACTC-GTGATTTAATCTCGG
* * * * *
5349946 TCGTTTTCCTTTTTCTGGCT-AGTGGTTTAATCTC-GGTCATTTTCATTTTTTGACTCGTGGTTT
1 TCGTTTTCATTTTT-TGACTCA-TGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTT
** * * * *
5350009 AATCCTTATCGTTTTCATTTTTTGACTAGTGATTTAATCCCGA
63 AATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * * * *
5350052 TCATTTT--TTATTTCTGACTCGTGATTTAACCTCAG-TCGTTGTCATTTCTTGACTCATGATTT
1 TCGTTTTCATT-TTT-TGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTT
** * ** * *
5350114 AATCCCGACTGTTTTC-TTTTCTTAACTCACGATTTAAAC-CTGA
63 AATCCCGA-TCATTTCATTTT-TTGACTCGTGATTTAATCTC-GG
* * * * **
5350157 TTGTATTCATTTTTTGACTCGTGGTTTAATCT-TGGTCGTTTTCATTTTCTGACTCACGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
** * * * * **
5350221 TCTTGATCTTTTTTATTTTCTAACTCGT-AGTTTAATAC-AAG
65 TCCCGATC-ATTTCATTTTTTGACTCGTGA-TTTAAT-CTCGG
* ** * * * *
5350262 TCATTTTCATTTTTTGACTCACAGTTTAATC-CCGATCATTTTCATTTTTTAACTTGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
*** * * * * * * *
5350326 TTTTGGTCATTTTCGTTCTCTAACAT-GTGATTTAGTTTCGG
65 TCCCGATCA-TTTCATTTTTTGAC-TCGTGATTTAATCTCGG
* * * * * * * **
5350367 T-GGTTTCGATTTTCTGACTCATGATTTATTCTCAG-TAGTTTTCGATTTTTTACATTTTGATTT
1 TCGTTTTC-ATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTTTGAC-TCGTGATTT
*** * * **
5350430 AATATTGATCATTTTCATTTCTCTGACTCATGATTTAGA-GACGG
63 AATCCCGATCA-TTTCATTT-TTTGACTCGTGATTTA-ATCTCGG
* * ** ** * * *
5350474 TTGTTTTTCATTTTCTGACTTGTTATTTAATCTC-AATCGTTTTCATTTTTTGACTCATGGTTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTA
*** *
5350538 ATCTTTATCATTTTCATTTTTTGACTCGTCG-TTTAATCTCAG
64 ATCCCGATCA-TTTCATTTTTTGACTCGT-GATTTAATCTCGG
* ** * * * * *
5350580 TTGTTTTTGTTTTTTGACTCACGATTTAAT-TTTGGTCATTTTCATTTTTTGACTTACG-G-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGAC-T-CGTGATTT
* * ** *** *
5350642 ATTTCCC-ATCGCTTTTGTTCCCTGACTCATGATTTAATC-CTGG
63 A-ATCCCGATC-ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* * ** * * * *
5350685 TCATTTTCATTTTTTTGATTTGTGATTTAATC-CTTG-TTGTTTTTATTTTTTGACTTGTGATTT
1 TCGTTTTCA-TTTTTTGACTCATGGTTTAATCTC-TGATCGTTTTCA-TTTTTGACTCGTGATTT
*** * ** ** *
5350748 AATTTTGGTTGTTTTCATTATCTAAGA-TGCGT--TCTAATCCCTC-G
63 AA-TCCCGATCATTTCATT-T-TTTGACT-CGTGATTTAAT--CTCGG
* * * * * * * * *
5350792 -CATTTTCATTTTATGAGTCGTGATTTATTCTCAG-TCATTTTCATTTTTTGACTCAT-AGTTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGA-TTTA
* * * * *
5350854 ATCTCGATCATTTTCATTTTCTGACCCATGGA-TTAATC-CTGA
64 ATCCCGATCA-TTTCATTTTTTGACTCGT-GATTTAATCTC-GG
* * * ** * * * * *
5350896 TCATTTTTCTTTTTTTGATTGGTGCTTTAATC-CTGGTTG-TTTCTATTTTTTGACTTGTGGTTT
1 TC-GTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-A-TTTTTGACTCGTGATTT
** * * * * *
5350959 AATCTGGCTCATTTTCATTTTCTGACTCAT-AGCTTAATC-AGG
63 AATCCCGATCA-TTTCATTTTTTGACTCGTGA-TTTAATCTCGG
** * * *
5351001 ATTATTTTCATTTTTTGACTCATGGTTTAATC-AT-AGTCATTTTCATTTTTTGACTCGTGATCT
1 -TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGA-TCGTTTTCA-TTTTTGACTCGTGATTT
** * * **
5351064 AATCGTGGTCCTTTTTCATTTTTTGACTCGTGATTTAATC-CTTA
63 AATCCCGAT-C-ATTTCATTTTTTGACTCGTGATTTAATCTC-GG
* ** ** * * *
5351108 TCATTTTTGTTTTTT---TCATGGGGAGTTTAATC-CCAATGGTTTTCATTTTCTGACTTGTGGT
1 TCGTTTTCATTTTTTGACTCAT---G-GTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGAT
** * ** ** * *
5351169 TTAATCTGGGTTGTTTTCATTTTTTGACTC-ACAGTTTAATCCCTG
61 TTAATC-CCGATCATTTCATTTTTTGACTCGTGA-TTTAATCTCGG
* * ** * * * * ** ** *
5351214 TCATTTTCATCTTCCGACTCACGGTTTAATCGC-GGTCATTTTCATCTTCCGACTCACGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCAT-TTTTGACTCGTGATTTAA
* * ***
5351278 TCGCGGTCATTTTCATTTTTTTGACTTACGATTTAATCTCGG
65 TCCCGATCA-TTTCA-TTTTTTGACTCGTGATTTAATCTCGG
* * * * *
5351320 TCGTTTTTCATTTTTTGACTCGTGTTTTAATCAC-GATCATTGTCATTTCTTGACTCGTGATTTA
1 TCG-TTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTTA
* * * * * **
5351384 AACCCGATCGCA-TTCATTTTCTGACTCATGGTTTAATCCCAA
64 ATCCCGAT--CATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * *
5351426 TCATTTT--TCTTTT---TCAT--TTT--T-T-T-ATCGTTCTCATTTTCTAACTCGT-AGCTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGA-TTTA
* * ** * * *
5351478 AT-TCTAGTCATTTTCATTTCCTGACTCATGGTTTAATC-CTGT
64 ATCCCGA-TCA-TTTCATTTTTTGACTCGTGATTTAATCTC-GG
* ** * * *
5351520 TCATTTTTC-TTTTTCTGACTGGTGGTTTAATCTC-GATC-ATTTCTATTTTCTGACTCATGGTT
1 TC-GTTTTCATTTTT-TGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTT-TGACTCGTGATT
** * * * * *
5351582 TAAT-CTTAGTCGTTTCCA-TTTCTGGCTCGTGCTTTAATCTAGG
62 TAATCCCGA-TCATTT-CATTTTTTGACTCGTGATTTAATCTCGG
* ** * ** * *
5351625 TCATTTTC-TTTTTCTGACTCAAT-GTTTAA-C-CCCACTTGTTTTTGTTTTCTGACTCATGGTT
1 TCGTTTTCATTTTT-TGACTC-ATGGTTTAATCTCTGA-TCGTTTTCATTTT-TGACTCGTGATT
* * ** * * *
5351686 TAATCCAGGTTGTTTTTCATTTTTTAACTCGT-ACTTTAATCGCAG
62 TAATCC-CGAT-CATTTCATTTTTTGACTCGTGA-TTTAATCTCGG
* * * * * * ** * * *
5351731 TCATTTTCATTTCTTGACTCATGATTCAA--ACTGGTCGCATTCATTTTCTAACTCGTGGTTTAG
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
* *
5351794 TCCCGATCA-TT--TTTTTT---TC---ATTT--T-TTGA
65 TCCCGATCATTTCATTTTTTGACTCGTGATTTAATCTCGG
* * * * *
5351822 TCGTTTTCATTTTCTGACTCGTGGTTTAATATC-AATCGTTTTCATTTTCTGACTCAATG-TTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTC-GTGATTTA
** * * * ** *
5351885 ATCTTGGTCCTTTTCCTTTTTCTAGA-TAATGGTTTAATCTCGG
64 ATCCCGAT-CATTTCATTTTT-T-GACTCGTGATTTAATCTCGG
* * * ** *
5351928 TCATTTTCATTTTCTGACTCGTGGTTTAATC-CTTTTCGTTTTCATTTGTTGACTAGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTTAA
* ** *
5351992 TCCCGGTCATTTTTTATTTTTGACTCGTGATTTAATCTCAG
65 TCCCGATCATTTCAT-TTTTTGACTCGTGATTTAATCTCGG
* ** * * * ** *
5352033 TCCTTGCCATTTCTTGACTCATGATTTAATC-CAGATTATTTTCATTTCTTAACTCGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTT-TTGACTCGTGATTTAA
* ** *
5352097 ACCCGATTGTATTCATTTTTTGACTCCTGATTTAATC-CTGG
65 TCCCGATCAT-TTCATTTTTTGACTCGTGATTTAATCTC-GG
* *
5352138 TCGTTTTCATTTTTTGACTCATGGTTT-ATCTC-GATCGTTTTCATTTTCTGAGTCGTGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTT-TGACTCGTGATTTAA
* ** * * * *
5352201 TCTCGATTTTTTTTATTTTCTAACTCGT-AGTTTAATAC-GGG
65 TCCCGA-TCATTTCATTTTTTGACTCGTGA-TTTAAT-CTCGG
* * ** * * *
5352242 TCATTTTCATTTTTTGACTAACAGTTTAATC-CCGATCATTTTCATTTTTTAACTCGTGATTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
** * * * * *
5352306 TTTCGATCATTTTTCGTTCTCTGACAT-GTGATTTAGTTTCGG
65 TCCCGATCA--TTTCATTTTTTGAC-TCGTGATTTAATCTCGG
* * * ** * * * *
5352348 TGGTTTTGATTTTCTGACTCATAATTTATTCTCAG-TAGTTTTCGACTTTTGACAT-GTGATTTA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTC-ATTTTTGAC-TCGTGATTTA
*** * * **
5352411 ATATTGATCATTTTCATTTCTCT-AGCTCATGATTTAATGACGG
64 ATCCCGATCA-TTTCATTT-TTTGA-CTCGTGATTTAATCTCGG
* * ** * * * * ** *
5352454 TTGTTTTAATTTTTTGACTTGTGATGTAATCTC-GATGGTTTTCATTTTTTTACTCACGGTTTAA
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGACTCGTGATTTAA
** *
5352518 TCTTGATCATTTTCATTTTTTGGCTCGCTG-TTTAATCTCGG
65 TCCCGATCA-TTTCATTTTTTGACTCG-TGATTTAATCTCGG
* ** * * * * * *
5352559 TTGTTTTGGTTTTCTAACTCATGATTTAAT-TTTGGTCATTTTCATTTTTTGACTTACG-G-TTT
1 TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCA-TTTTTGAC-T-CGTGATTT
* *
5352621 AATTCCC-ATCATTT--TTTTTCGCTGACTCATGATTTAATC-CTAG
63 AA-TCCCGATCATTTCATTTTT---TGACTCGTGATTTAATCTC-GG
* * * * *
5352664 TCATTTTCATTTTTTTGATTCGTGATTTAATC-CTTG-TTGTTTTCATTTTTTGACTCGTGATTT
1 TCGTTTTCA-TTTTTTGACTCATGGTTTAATCTC-TGATCGTTTTCA-TTTTTGACTCGTGATTT
5352727 AAT
63 AAT
5352730 TTTGGTTGTT
Statistics
Matches: 6996, Mismatches: 1973, Indels: 1397
0.67 0.19 0.13
Matches are distributed among these distances:
89 2 0.00
90 27 0.00
91 73 0.01
92 71 0.01
93 92 0.01
94 183 0.03
95 25 0.00
96 31 0.00
97 26 0.00
98 80 0.01
99 24 0.00
100 44 0.01
101 71 0.01
102 121 0.02
103 211 0.03
104 408 0.06
105 2332 0.33
106 2126 0.30
107 738 0.11
108 149 0.02
109 41 0.01
110 21 0.00
111 91 0.01
112 9 0.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (104 bp):
TCGTTTTCATTTTTTGACTCATGGTTTAATCTCTGATCGTTTTCATTTTTGACTCGTGATTTAAT
CCCGATCATTTCATTTTTTGACTCGTGATTTAATCTCGG
Found at i:5346183 original size:106 final size:106
Alignment explanation
Indices: 5345932--5346277 Score: 263
Period size: 106 Copynumber: 3.3 Consensus size: 106
5345922 TTTTCAGTAA
* * * * * *
5345932 TTTTCATTTTCTAACTCATAGTTTAATCTTGAT-CATTTTCATTTTCTGACCAATGGTTTAATCC
1 TTTTCATTTTTTAACTCATAGTTTAATCGTGGTCCATTTTCATTTTCAGACCAATGGCTTAATCA
* * * * *
5345996 TGATCGTTTTTCTTTTTTTGACTAGTGGTTTAATCCTGGTTG
66 GGATC-TTTTTCATTTTTTGACTAGTGGTTTAATCATAGTCG
* * * * * * *
5346038 TTTCCATTTTTTGACTTATAGTTTAAT-GTAGCCCGTTTTCATTTTCAGACCCATGGCTTAATCA
1 TTTTCATTTTTTAACTCATAGTTTAATCGTGGTCCATTTTCATTTTCAGACCAATGGCTTAATCA
5346102 GGAT-TATTTTCATTTTTTGACTCA-TGGTTTAATCATAGTCG
66 GGATCT-TTTTCATTTTTTGACT-AGTGGTTTAATCATAGTCG
* * * * ** * *
5346143 TTTTCATTTTTTAACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTC-GTGGTTTAATC
1 TTTTCATTTTTTAACTCATAGTTTAATCGTGGTCCATTTTCATTTTCAGAC-CAATGGCTTAATC
* * * * * ** *
5346207 -GCTATCATTTTTCATTTTTTCATTGGTAGTTTAATCCCAATCG
65 AG-GATC-TTTTTCATTTTTTGACTAGTGGTTTAATCATAGTCG
* * *
5346250 TTTTCATTTTTTGACTCATGGCTTAATC
1 TTTTCATTTTTTAACTCATAGTTTAATC
5346278 TCGATCGTTT
Statistics
Matches: 188, Mismatches: 43, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
104 1 0.01
105 52 0.28
106 82 0.44
107 52 0.28
108 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (106 bp):
TTTTCATTTTTTAACTCATAGTTTAATCGTGGTCCATTTTCATTTTCAGACCAATGGCTTAATCA
GGATCTTTTTCATTTTTTGACTAGTGGTTTAATCATAGTCG
Found at i:5346786 original size:106 final size:105
Alignment explanation
Indices: 5346601--5346806 Score: 236
Period size: 106 Copynumber: 1.9 Consensus size: 105
5346591 ATCTCGATCA
* * ** * * *
5346601 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGATTTAATCC
1 TTTTAATTTTCTGACCCATGGCTTAATCAGGATC-TTTTTCATTTTTTGACTCGTGATCTAATCC
*
5346666 TGGTTGTTTCCATTTTTTAACTTGCGGTTTAATCCGGCTCG
65 TGGTTGTTTCCATTTTTTAACTCGCGGTTTAATCCGGCTCG
* * *
5346707 TTTTAATTTTCTGACTCATGGCTTAATCAGGAT-TATTTTCATTTTTTGACTCGTGGTCTAATCG
1 TTTTAATTTTCTGACCCATGGCTTAATCAGGATCT-TTTTCATTTTTTGACTCGTGATCTAATCC
* * *
5346771 TGGTCCT-TTTTCATTTTTTGACTCGTGGTTTAATCC
65 TGGT--TGTTTCCATTTTTTAACTCGCGGTTTAATCC
5346807 CTATCATTTT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
104 1 0.01
105 28 0.34
106 53 0.64
107 1 0.01
ACGTcount: A:0.16, C:0.18, G:0.17, T:0.50
Consensus pattern (105 bp):
TTTTAATTTTCTGACCCATGGCTTAATCAGGATCTTTTTCATTTTTTGACTCGTGATCTAATCCT
GGTTGTTTCCATTTTTTAACTCGCGGTTTAATCCGGCTCG
Found at i:5346894 original size:176 final size:176
Alignment explanation
Indices: 5346601--5347086 Score: 450
Period size: 176 Copynumber: 2.8 Consensus size: 176
5346591 ATCTCGATCA
* * *
5346601 TTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTGGTGA-TTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCT-ATCATTTTTCTTTTTTTGACTGGT-ATTTTAAT
* * ** * * * *
5346664 CCTGGTTGTTTCCATTTTTTAACTTG-CGGTTTAAT-CCGGCTCGTTTTAATTTTCTGACTCATG
64 CCCGATCATTTTCATTTTTTGACTTGTC-ATTTAATCCCGAC-CGTTTTAATTTTCTGACTCATG
* * ** *
5346727 GCTTAATCAGGATTATTTTCATTTTTTGACTCGTGGTCT-AATCGTGGTCC
127 GTTTAATCAGGATTATTTTCACTTTTTGACTCACGGT-TGAATCCTGGTCC
*
5346777 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-TGGTATTTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTTTTCTTTTTTTGACTGGTATTTTAATC
* * **
5346841 CCAATCATTTTCATTTTTTGACTTGTCATTTAATCCCGACCGTTTTTATTTTCTGACTTGTGGTT
65 CCGATCATTTTCATTTTTTGACTTGTCATTTAATCCCGACCGTTTTAATTTTCTGACTCATGGTT
* * * *
5346906 TAATCTGGGTTGTTTTCACTTTTTGACTCACGGTTGAATCCTTGTCC
130 TAATCAGGATTATTTTCACTTTTTGACTCACGGTTGAATCCTGGTCC
* ** * * **
5346953 TTTTCATATTTCAACTCACGGTTTAATCGCGGTCA-TTTTCATTTTTTTGACT--TATGATTTAA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTTTTC-TTTTTTTGACTGGTAT--TTTAA
* * * * * * ** * *
5347015 TCACGATCATTTTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTCTGGCTCATGG
63 TCCCGATCATTTTCATTTTTTGACTTGTCATTTAATCCCGACCGTTTTAATTTTCTGACTCATGG
5347080 TTTAATC
128 TTTAATC
5347087 CCAATCATTT
Statistics
Matches: 254, Mismatches: 46, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
174 8 0.03
175 38 0.15
176 158 0.62
177 47 0.19
178 3 0.01
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (176 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCCTATCATTTTTCTTTTTTTGACTGGTATTTTAATCC
CGATCATTTTCATTTTTTGACTTGTCATTTAATCCCGACCGTTTTAATTTTCTGACTCATGGTTT
AATCAGGATTATTTTCACTTTTTGACTCACGGTTGAATCCTGGTCC
Found at i:5347375 original size:106 final size:105
Alignment explanation
Indices: 5347151--5347380 Score: 246
Period size: 106 Copynumber: 2.2 Consensus size: 105
5347141 TAATTCCAGT
* * *
5347151 CATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATC
1 CATTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACCCACGGCTTAATC
** * * ** * * *
5347216 CTGATCGTTTTTCTTTTTTTGATTGGTGCTTTAATCCTGGT
66 AGGATC-TTTTTCATTTTTTGACTCATGCTTTAATCATAGC
** * * * * * *
5347257 TGTTTCCATTTTTTGACTTACGGTTTAATCTGGCTCATTTTCATTTTCTGACTCACGGCTTAATC
1 CATTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACCCACGGCTTAATC
*
5347322 AGGAT-TATTTTCATTTTTTGACTCATGGTTTAATCATAGC
66 AGGATCT-TTTTCATTTTTTGACTCATGCTTTAATCATAGC
5347362 CATTTTCATTTTTTGACTC
1 CATTTTCATTTTTTGACTC
5347381 GTGGTCTAAT
Statistics
Matches: 98, Mismatches: 25, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
104 1 0.01
105 40 0.41
106 57 0.58
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.50
Consensus pattern (105 bp):
CATTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACCCACGGCTTAATC
AGGATCTTTTTCATTTTTTGACTCATGCTTTAATCATAGC
Found at i:5347410 original size:71 final size:69
Alignment explanation
Indices: 5347151--5347427 Score: 220
Period size: 71 Copynumber: 3.9 Consensus size: 69
5347141 TAATTCCAGT
* * * * * *
5347151 CATTTTCATTTTTTGACTCATAGTTTAATC-TCGATCATTTTCATTTTCTGACCCATGGTTTAAT
1 CATTTTCATTTTTTGACTCATGGTCTAATCAT-GGTTATTTTCATTTTTTGACTCATGGTTTAAT
*
5347215 CCTGATC
65 -CT-AGC
** * * ** * * * * * * *
5347222 GTTTTTCTTTTTTTGATTGGTGCTTTAATCCTGGTTGTTTCCATTTTTTGACTTACGGTTTAATC
1 CATTTTCATTTTTTGACTCATGGTCTAATCATGGTTATTTTCATTTTTTGACTCATGGTTTAATC
*
5347287 TGGC
66 TAGC
* *
5347291 TCATTTTCATTTTCTGACTCACGG-CTTAATCA-GGATTATTTTCATTTTTTGACTCATGGTTTA
1 -CATTTTCATTTTTTGACTCATGGTC-TAATCATGG-TTATTTTCATTTTTTGACTCATGGTTTA
5347354 ATCATAGC
63 ATC-TAGC
* *
5347362 CATTTTCATTTTTTGACTCGTGGTCTAATCATGGTCCT-TTTTCATTTTTTGACTCGTGGTTTAA
1 CATTTTCATTTTTTGACTCATGGTCTAATCATGGT--TATTTTCATTTTTTGACTCATGGTTTAA
5347426 TC
64 TC
5347428 CCTATCATTT
Statistics
Matches: 159, Mismatches: 38, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
69 3 0.02
70 75 0.47
71 79 0.50
72 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (69 bp):
CATTTTCATTTTTTGACTCATGGTCTAATCATGGTTATTTTCATTTTTTGACTCATGGTTTAATC
TAGC
Found at i:5347423 original size:141 final size:141
Alignment explanation
Indices: 5347150--5347427 Score: 317
Period size: 141 Copynumber: 2.0 Consensus size: 141
5347140 TTAATTCCAG
* * * *
5347150 TCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAAT
1 TCATTTTCATTTTCTGACTCACAGCTTAATCACGATCATTTTCATTTTCTGACCCATGGTTTAAT
* * ** * * * * * *
5347215 CCTGATCGTTTTTCTTTTTTTGATTGGTGCTTTAATCCTGGTTGTTTCCATTTTTTGACTTACGG
66 CATGAGCCATTTTCATTTTTTGACTCGTGCTCTAATCATGGTTGTTTCCATTTTTTGACTCACGG
5347280 TTTAATCTGGC
131 TTTAATCTGGC
* * * * *
5347291 TCATTTTCATTTTCTGACTCACGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAAT
1 TCATTTTCATTTTCTGACTCACAGCTTAATCACGATCATTTTCATTTTCTGACCCATGGTTTAAT
* * **
5347356 CAT-AGCCATTTTCATTTTTTGACTCGTGGTCTAATCATGGTCCT-TTTTCATTTTTTGACTCGT
66 CATGAGCCATTTTCATTTTTTGACTCGTGCTCTAATCATGGT--TGTTTCCATTTTTTGACTCAC
5347419 GGTTTAATC
129 GGTTTAATC
5347428 CCTATCATTT
Statistics
Matches: 112, Mismatches: 23, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
140 29 0.26
141 82 0.73
142 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (141 bp):
TCATTTTCATTTTCTGACTCACAGCTTAATCACGATCATTTTCATTTTCTGACCCATGGTTTAAT
CATGAGCCATTTTCATTTTTTGACTCGTGCTCTAATCATGGTTGTTTCCATTTTTTGACTCACGG
TTTAATCTGGC
Found at i:5347441 original size:212 final size:213
Alignment explanation
Indices: 5347151--5347640 Score: 526
Period size: 212 Copynumber: 2.3 Consensus size: 213
5347141 TAATTCCAGT
* * * * * * *
5347151 CATTTTCATTTTTTGACTCATAGTTTAATCTCGAT-CATTTTCATTTTCTGACCCATGGTTTAAT
1 CATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCCTTTTTCATTTTTTGACTCGTGGTTTAAT
* * * ** * * *
5347215 -CCTGATCGTTTTTCTTTTTTTGATTGGTG-CTTTAATCCTGGTTGTTTCCATTTTTTGACTTAC
66 CCCTGATCATTTTTCTTTTTTTCA-TGGGGACTTTAATCCTAATGGTTTCCATTTTCTAACTTAC
** * * *
5347278 GGTTTAATCT-GGCTCATTTTCATTTTCTGACTCACGGCTTAATCAGGATTATTTTCATTTTTTG
130 GGTTTAATCTAGG-TCATTTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTTCG
*
5347342 ACTCATGGTTTAATC-ATAGC
194 ACTCATGGTTTAATCGAGA-C
*
5347362 CATTTTCATTTTTTGACTCGTGGTCTAATCAT-GGTCCTTTTTCATTTTTTGACTCGTGGTTTAA
1 CATTTTCATTTTTTGACTCGTGGTTTAATC-TCGGTCCTTTTTCATTTTTTGACTCGTGGTTTAA
* * *
5347426 TCCCT-ATCATTTTTCTTTTTTTCATGGGGAGTTTAATCCTAATGGTTTTCATTTTCTAACTTGC
65 TCCCTGATCATTTTTCTTTTTTTCATGGGGACTTTAATCCTAATGGTTTCCATTTTCTAACTTAC
* ** * * * *
5347490 GGTTTAATCTATGTTGTTTTCATTTTTTGACTCACGGTTTAATCCCCATCGTTTTCATCTTTCGA
130 GGTTTAATCTAGGTCATTTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTTCGA
* *
5347555 CTCATGGTTTAATCGCGAT
195 CTCATGGTTTAATCGAGAC
* * * * * *
5347574 CATTTTCATTTTTTCGACTTGCGATTTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTAA
1 CATTTTCATTTTTT-GACTCGTGGTTTAATCTCGGTCCTTTTTCATTTTTTGACTCGTGGTTTAA
5347639 TC
65 TC
5347641 ACGATCGTTT
Statistics
Matches: 230, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
211 33 0.14
212 149 0.65
213 48 0.21
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (213 bp):
CATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTCCTTTTTCATTTTTTGACTCGTGGTTTAAT
CCCTGATCATTTTTCTTTTTTTCATGGGGACTTTAATCCTAATGGTTTCCATTTTCTAACTTACG
GTTTAATCTAGGTCATTTTCATTTTCTGACTCACGGCTTAATCACCATCATTTTCATCTTTCGAC
TCATGGTTTAATCGAGAC
Found at i:5347681 original size:107 final size:105
Alignment explanation
Indices: 5347471--5347681 Score: 244
Period size: 107 Copynumber: 2.0 Consensus size: 105
5347461 ATCCTAATGG
* * * *
5347471 TTTTCATTTTCTAACTTGCGGTTTAATCTATGTTGTTTTCATTTTTTGACTCACGGTTTAATCCC
1 TTTTCATTTTCTAACTTGCGATTTAATCTAGGTCGTTTTCATTTTTTGACTCACGGTTTAATCAC
* * *
5347536 CATCGTTTTCATCTTTCGACTCATGGTTTAATCGCGATCA
66 CATCGTTTTCATCTTTCGACTCATGATTTAAACCCGATCA
* * * ** *
5347576 TTTTCATTTTTTCGACTTGCGATTTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCATTTTCT-AACTTGCGATTTAATCTAGGTCGTT-TTCATTTTTTGACTCACGGTTTAATC
* * *
5347641 ACGATCGTTTTCAT-TTCTTGACTCGTGATTTAAACCCGATC
64 ACCATCGTTTTCATCTT-TCGACTCATGATTTAAACCCGATC
5347682 GCATTCATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
105 11 0.13
106 22 0.25
107 54 0.62
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.48
Consensus pattern (105 bp):
TTTTCATTTTCTAACTTGCGATTTAATCTAGGTCGTTTTCATTTTTTGACTCACGGTTTAATCAC
CATCGTTTTCATCTTTCGACTCATGATTTAAACCCGATCA
Found at i:5348036 original size:71 final size:71
Alignment explanation
Indices: 5347950--5348096 Score: 165
Period size: 72 Copynumber: 2.1 Consensus size: 71
5347940 ATCCCACTTG
* * **
5347950 TTTTCGTTTCCTGACTCATTG-TTTATTCTCAGTAG-TTTTCGATTTT-TGACATGTGATTTAAT
1 TTTTCATTTCCTGACTCA-TGATTTAATAACAGTAGTTTTTC-ATTTTCTGACATGTGATTTAAT
5348012 ATCGATCA
64 ATCGATCA
* * * *
5348020 TTTTCATTTCTCTGACTCATGATTTAATAACTGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TTTTCATTTC-CTGACTCATGATTTAATAACAGTAGTTTTTCATTTTCTGACATGTGATTTAATA
*
5348085 TCGATCG
65 TCGATCA
5348092 TTTTC
1 TTTTC
5348097 TTTTTTTGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
70 11 0.17
71 22 0.34
72 31 0.48
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (71 bp):
TTTTCATTTCCTGACTCATGATTTAATAACAGTAGTTTTTCATTTTCTGACATGTGATTTAATAT
CGATCA
Found at i:5348527 original size:71 final size:69
Alignment explanation
Indices: 5348436--5348594 Score: 187
Period size: 71 Copynumber: 2.2 Consensus size: 69
5348426 GTTTCGGGGG
*
5348436 TTTCGATTTTCTGACTCATGATTTATTC-TCAGTAGTTTTCAATTTT-TGACATGTGATTTAATA
1 TTTC-ATTTTCTGACTCATGATTTA-ACAT-AGTAGTTTT-AATTTTCTGACATGTGATTTAATA
5348499 TCGATCAT
62 TCGATCAT
* * * *
5348507 TTTCATTTCTCTGACTCATGATTTAACGATGGTTGTTTTAATTTTCTGACTTGTGATTTAATCTC
1 TTTCATTT-TCTGACTCATGATTTAAC-ATAGTAGTTTTAATTTTCTGACATGTGATTTAATATC
*
5348572 GATCGT
64 GATCAT
*
5348578 TTTCATTTTTTGACTCA
1 TTTCATTTTCTGACTCA
5348595 CGGTTTAGTC
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
70 19 0.25
71 57 0.74
72 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (69 bp):
TTTCATTTTCTGACTCATGATTTAACATAGTAGTTTTAATTTTCTGACATGTGATTTAATATCGA
TCAT
Found at i:5349364 original size:207 final size:207
Alignment explanation
Indices: 5349001--5349379 Score: 476
Period size: 207 Copynumber: 1.8 Consensus size: 207
5348991 TTAATCCTGG
* * *
5349001 TTGTTTCCATTTTTTAACTTATGGTTTAATCTGGCTCGTTTTCATTTTTTGACTCATGGCTTAAT
1 TTGTTTCCATTTTCTAACTGATGGTTTAATCTGGCTCGTTTTCATTTTCTGACTCATGGCTTAAT
* * * ***
5349066 CAAGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTCTGACTCGTGGT
66 CAAGATTATTTTCATTTTTTGACTCACGGTTTAATCATAGTCATTTTCATCTTCCGACTCACAGT
*** ** *
5349131 CTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCTTATCATTTTTTTTGATGGCTA
131 CTAATCACAGTAATTTTTCATTTTTTGACTCGTGATTTAATCCTTATCATTTTTTTTGATGGCTA
5349196 GTTTAATCCCAA
196 GTTTAATCCCAA
* ** *
5349208 TTGTTTCCATTTTCTAACTGGTGGTTTAATCCTGG-TCGTTTTCATTTTCTGACTTGTGGTTTAA
1 TTGTTTCCATTTTCTAACTGATGGTTTAAT-CTGGCTCGTTTTCATTTTCTGACTCATGGCTTAA
* * * * *
5349272 TCTAGGTTGTTTTCATTTTTTGACTCACGGTTTAATCCCT-GTCCTTTTCATCTTCCGACTCACA
65 TCAAGATTATTTTCATTTTTTGACTCACGGTTTAAT-CATAGTCATTTTCATCTTCCGACTCACA
* *
5349336 GTTTAATCACAGTAATTTTT-ATTTTTTTGACTTGTGATTTAATC
129 GTCTAATCACAGTAATTTTTCA-TTTTTTGACTCGTGATTTAATC
5349380 TCGGTCGTTC
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
206 1 0.01
207 136 0.95
208 6 0.04
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (207 bp):
TTGTTTCCATTTTCTAACTGATGGTTTAATCTGGCTCGTTTTCATTTTCTGACTCATGGCTTAAT
CAAGATTATTTTCATTTTTTGACTCACGGTTTAATCATAGTCATTTTCATCTTCCGACTCACAGT
CTAATCACAGTAATTTTTCATTTTTTGACTCGTGATTTAATCCTTATCATTTTTTTTGATGGCTA
GTTTAATCCCAA
Found at i:5349425 original size:37 final size:35
Alignment explanation
Indices: 5349358--5349473 Score: 108
Period size: 36 Copynumber: 3.3 Consensus size: 35
5349348 TAATTTTTAT
* *
5349358 TTTTTTGACTTGTGATTTAATCTCGGTCGTTCTTCA
1 TTTTTTGACTTGTGATTTAATCACGATCGTT-TTCA
*
5349394 TTTTTTGACTTGTGTTTTAATCCACGATCGTTTTCA
1 TTTTTTGACTTGTGATTTAAT-CACGATCGTTTTCA
* ** * * **
5349430 -TTCTTGACTCATGATTTAAACCCGATCGAATTCA
1 TTTTTTGACTTGTGATTTAATCACGATCGTTTTCA
*
5349464 TTTTATGACT
1 TTTTTTGACT
5349474 CATGTTTAAT
Statistics
Matches: 65, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
34 11 0.17
35 22 0.34
36 24 0.37
37 8 0.12
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (35 bp):
TTTTTTGACTTGTGATTTAATCACGATCGTTTTCA
Found at i:5349728 original size:31 final size:31
Alignment explanation
Indices: 5349687--5349745 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
5349677 TCTAGGTCAT
*
5349687 TTTCTTTTTCTGACTCAAT-GTTTAATCCCAC
1 TTTCGTTTTCTGACTC-ATGGTTTAATCCCAC
5349718 TTTCGTTTTCTGACTCATGGTTTAATCC
1 TTTCGTTTTCTGACTCATGGTTTAATCC
5349746 AGGTTGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.17, C:0.24, G:0.10, T:0.49
Consensus pattern (31 bp):
TTTCGTTTTCTGACTCATGGTTTAATCCCAC
Found at i:5350045 original size:35 final size:35
Alignment explanation
Indices: 5349874--5351197 Score: 243
Period size: 35 Copynumber: 37.6 Consensus size: 35
5349864 TTCATTTTTA
* ** *
5349874 ATCGTTTTCATTTTTTTGACTCA-TGGTTTAATATTA
1 ATCGTTTTCA-TTTTTTGACT-AGTGATTTAATCCTG
* * *
5349910 ATCATTTTCATTTTCTGACTCAATG-TTTAAT-CTCG
1 ATCGTTTTCATTTTTTGACT-AGTGATTTAATCCT-G
* * * *
5349945 GTCGTTTTCCTTTTTCTGGCTAGTGGTTTAAT-CTCG
1 ATCGTTTTCATTTTT-TGACTAGTGATTTAATCCT-G
* * * * *
5349981 GTCATTTTCATTTTTTGACTCGTGGTTTAATCCTT
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
*
5350016 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCCG
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * *
5350051 ATCATTTT--TTATTTCTGACTCGTGATTTAA-CCTC
1 ATCGTTTTCATT-TTT-TGACTAGTGATTTAATCCTG
* * *
5350085 AGTCGTTGTCATTTCTTGACTCA-TGATTTAATCCCG
1 A-TCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * *
5350121 A-CTGTTTTC-TTTTCTTAACTCA-CGATTTAAACCTG
1 ATC-GTTTTCATTTT-TTGACT-AGTGATTTAATCCTG
* * * * *
5350156 ATTGTATTCATTTTTTGACTCGTGGTTTAATCTTG
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * * *
5350191 GTCGTTTTCATTTTCTGACTCA-CGATTTAATCTTG
1 ATCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * * * * * *
5350226 ATCTTTTTTATTTTCTAACTCGT-AGTTTAATAC-A
1 ATCGTTTTCATTTTTTGACTAGTGA-TTTAATCCTG
* ** *
5350260 AGTCATTTTCATTTTTTGACTCACAG-TTTAATCCCG
1 A-TCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * * **
5350296 ATCATTTTCATTTTTTAACTTGTGATTTAATTTTG
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * * * * * * *
5350331 GTCATTTTCGTTCTCTAAC-ATGTGATTTAGT-TTCG
1 ATCGTTTTCATTTTTTGACTA-GTGATTTAATCCT-G
* * * * *
5350366 GT-GGTTTCGATTTTCTGACTCA-TGATTT-ATTCTC
1 ATCGTTTTC-ATTTTTTGACT-AGTGATTTAATCCTG
* ** **
5350400 AGTAGTTTTCGATTTTTT-ACATTTTGATTTAATATTG
1 A-TCGTTTTC-ATTTTTTGAC-TAGTGATTTAATCCTG
* * **
5350437 ATCATTTTCATTTCTCTGACTCA-TGATTTAGAGAC-G
1 ATCGTTTTCATTT-TTTGACT-AGTGATTTA-ATCCTG
* * * * * *
5350473 GTTGTTTTTCATTTTCTGACTTGTTATTTAAT-CTCA
1 ATCG-TTTTCATTTTTTGACTAGTGATTTAATCCT-G
* * *
5350509 ATCGTTTTCATTTTTTGACTCA-TGGTTTAATCTTT
1 ATCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * *
5350544 ATCATTTTCATTTTTTGACTCGTCG-TTTAAT-CTC
1 ATCGTTTTCATTTTTTGACTAGT-GATTTAATCCTG
* ** * **
5350578 AGTTGTTTTTGTTTTTTGACTCA-CGATTTAATTTTG
1 A-TCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * * *
5350614 GTCATTTTCATTTTTTGACTTACG-G-TTTATTTCC-C
1 ATCGTTTTCATTTTTTGAC-TA-GTGATTTA-ATCCTG
* ***
5350649 ATCGCTTTT-GTTCCCTGACTCA-TGATTTAATCCTG
1 ATCG-TTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * * *
5350684 GTCATTTTCATTTTTTTGATTTGTGATTTAATCCTTG
1 ATCGTTTTCA-TTTTTTGACTAGTGATTTAATCC-TG
* * * **
5350721 -TTGTTTTTATTTTTTGACTTGTGATTTAATTTTG
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * * * *
5350755 GTTGTTTTCATTATCT-A--AGATGCGTTCTAATCCCTCG
1 ATCGTTTTCATTTTTTGACTAG-TG-ATT-TAAT-CCT-G
* * * * * *
5350792 --CATTTTCATTTTATGAGTCGTGATTT-ATTCTC
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
*
5350824 AGTCATTTTCATTTTTTGACTCA-T-AGTTTAAT-CTCG
1 A-TCGTTTTCATTTTTTGACT-AGTGA-TTTAATCCT-G
* * *
5350860 ATCATTTTCATTTTCTGACCCA-TGGA-TTAATCCTG
1 ATCGTTTTCATTTTTTGA-CTAGT-GATTTAATCCTG
* * * * *
5350895 ATCATTTTTCTTTTTTTGATTGGTGCTTTAATCCTG
1 ATC-GTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * * *
5350931 GTTG-TTTCTATTTTTTGACTTGTGGTTTAAT-CTGG
1 ATCGTTTTC-ATTTTTTGACTAGTGATTTAATCCT-G
* * * * **
5350966 CTCATTTTCATTTTCTGACTCA-T-AGCTTAATCAGG
1 ATCGTTTTCATTTTTTGACT-AGTGA-TTTAATCCTG
** * *
5351001 ATTATTTTCATTTTTTGACTCA-TGGTTTAATCAT-
1 ATCGTTTTCATTTTTTGACT-AGTGATTTAATCCTG
* * * *
5351035 AGTCATTTTCATTTTTTGACTCGTGATCTAATCGTG
1 A-TCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* * * *
5351071 GTCCTTTTTCATTTTTTGACTCGTGATTTAATCCTT
1 AT-CGTTTTCATTTTTTGACTAGTGATTTAATCCTG
* ** * * * **
5351107 ATCATTTTTGTTTTTT-TCATGGGGAGTTTAATCCCA
1 ATCGTTTTCATTTTTTGAC-TAGTGA-TTTAATCCTG
* * * *
5351143 ATGGTTTTCATTTTCTGACTTGTGGTTTAAT-CTGG
1 ATCGTTTTCATTTTTTGACTAGTGATTTAATCCT-G
* *
5351178 GTTGTTTTCATTTTTTGACT
1 ATCGTTTTCATTTTTTGACT
5351198 CACAGTTTAA
Statistics
Matches: 940, Mismatches: 245, Indels: 207
0.68 0.18 0.15
Matches are distributed among these distances:
32 1 0.00
33 6 0.01
34 51 0.05
35 630 0.67
36 224 0.24
37 27 0.03
38 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (35 bp):
ATCGTTTTCATTTTTTGACTAGTGATTTAATCCTG
Found at i:5350996 original size:106 final size:102
Alignment explanation
Indices: 5350829--5351587 Score: 325
Period size: 106 Copynumber: 7.3 Consensus size: 102
5350819 TTCTCAGTCA
* * * * * *
5350829 TTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGATTAATCCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCT-GGTCATTTTCATTTTCTGACTCATAGTTTAATCCT
*
5350894 GATCATTTTTCTTTTTTTGATTGGTGCTTTAATCCTGGT
65 GATCATTTTTCTTTTTTTGA-TGGTGGTTTAATCCTGGT
* *
5350933 TGTTTCTATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATAGCTTAATC
1 T-TTTC-ATTTTTTGACTCGTGGTTTAATCTGG-TCATTTTCATTTTCTGACTCATAGTTTAATC
** * * ** * *
5350998 AGGATTA-TTTTCATTTTTTGACTCATGGTTTAATCATAGT
63 CTGATCATTTTTCTTTTTTTGA-TGGTGGTTTAATCCTGGT
* * * * *
5351038 CATTTTCATTTTTTGACTCGTGATCTAATCGTGGTCCTTTTTCATTTTTTGACTCGT-GATTTAA
1 --TTTTCATTTTTTGACTCGTGGTTTAATC-TGGT-CATTTTCATTTTCTGACTCATAG-TTTAA
* * * *
5351102 TCCTTATCATTTTTGTTTTTTTCATGGGGAGTTTAATCCCAATGG-
61 TCCTGATCATTTTTCTTTTTTTGATGGTG-GTTTAAT-CC--TGGT
* * ** * *
5351147 TTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCACAGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCT-GGTCATTTTCATTTTCTGACTCATAGTTTAAT-CC
* * ** ***
5351212 TG-TCA-TTTTCATCTTCCGACTCACGGTTTAATCGC-GGT
64 TGATCATTTTTCTTTTTTTGA-TGGTGGTTTAATC-CTGGT
* ** ** * *
5351250 CATTTTCATCTTCCGACTCACGGTTTAATCGCGGTCATTTTCATTTTTTTGACT--TACGATTTA
1 --TTTTCATTTTTTGACTCGTGGTTTAATC-TGGTCATTTTCA-TTTTCTGACTCATA-G-TTTA
* * * * * *
5351313 AT-CTCGGTCGTTTTTCATTTTTTGACTCGTGTTTTAATCAC-GAT
60 ATCCT-GATCATTTTTCTTTTTTTGA-TGGTGGTTTAATC-CTGGT
* * * * * * *** *
5351357 CATTGTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTCTGACTCATGGTTTAATC
1 --TTTTCATTTTTTGACTCGTGGTTT-AATCTGGTCATTTTCATTTTCTGACTCATAGTTTAATC
** * * *
5351422 CCAATCATTTTTC--TTTTTCAT--T-TTTTTAT-C--G-
63 CTGATCATTTTTCTTTTTTTGATGGTGGTTTAATCCTGGT
* * * * * * * *
5351453 TTCTCATTTTCTAACTCGTAGCTTAATTCTAGTCATTTTCATTTCCTGACTCATGGTTTAATCCT
1 TTTTCATTTTTTGACTCGTGGTTTAA-TCTGGTCATTTTCATTTTCTGACTCATAGTTTAATCCT
* * *
5351518 GTTCATTTTTCTTTTTCTGACTGGTGGTTTAAT-CTCGAT
65 GATCATTTTTCTTTTTTTGA-TGGTGGTTTAATCCT-GGT
* * *
5351557 CATTTCTATTTTCTGACTCATGGTTTAATCT
1 -TTTTC-ATTTTTTGACTCGTGGTTTAATCT
5351588 TAGTCGTTTC
Statistics
Matches: 487, Mismatches: 123, Indels: 89
0.70 0.18 0.13
Matches are distributed among these distances:
93 2 0.00
94 55 0.11
96 5 0.01
97 1 0.00
98 1 0.00
99 1 0.00
100 12 0.02
101 1 0.00
102 2 0.00
103 1 0.00
104 11 0.02
105 109 0.22
106 176 0.36
107 103 0.21
108 5 0.01
110 2 0.00
ACGTcount: A:0.18, C:0.19, G:0.14, T:0.50
Consensus pattern (102 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTGGTCATTTTCATTTTCTGACTCATAGTTTAATCCTG
ATCATTTTTCTTTTTTTGATGGTGGTTTAATCCTGGT
Found at i:5351112 original size:141 final size:139
Alignment explanation
Indices: 5350794--5351114 Score: 351
Period size: 141 Copynumber: 2.3 Consensus size: 139
5350784 ATCCCTCGCA
* * * * * *
5350794 TTTTCATTTTATGAGTCGTGATTTATTCTCAGTCATTTTCATTTTTTGACTCATAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGATTTAATCTCA-TCATTTTCATTTTCTGACTCATAGCTTAATCAC
* * * * * *
5350859 GATCATTTTCATTTTCTGACCCATGGATTAATCCTGATCATTTTTCTTTTTTTGATTGGTGCTTT
65 GATCATTTTCATTTTCTGACCCATGGATTAATCATGATCATTTTTCATTTTTTGACTCGTGATCT
5350924 AATCCTGGTT
130 AATCCTGGTT
* * *
5350934 GTTTCTATTTTTTGACTTGTGGTTTAATCTGGC-TCATTTTCATTTTCTGACTCATAGCTTAATC
1 TTTTC-ATTTTTTGACTCGTGATTTAATCT--CATCATTTTCATTTTCTGACTCATAGCTTAATC
* * * * *
5350998 AGGATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCA-TTTTCATTTTTTGACTCGTGA
63 ACGATCATTTTCATTTTCTGACCCATGGATTAATCATGA-TCATTTTTCATTTTTTGACTCGTGA
*
5351061 TCTAATCGTGGTCCT
127 TCTAATCCTGGT--T
*
5351076 TTTTCATTTTTTGACTCGTGATTTAATCCTTATCATTTT
1 TTTTCATTTTTTGACTCGTGATTTAAT-CTCATCATTTT
5351115 TGTTTTTTTC
Statistics
Matches: 148, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
140 32 0.22
141 108 0.73
142 7 0.05
143 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (139 bp):
TTTTCATTTTTTGACTCGTGATTTAATCTCATCATTTTCATTTTCTGACTCATAGCTTAATCACG
ATCATTTTCATTTTCTGACCCATGGATTAATCATGATCATTTTTCATTTTTTGACTCGTGATCTA
ATCCTGGTT
Found at i:5351300 original size:212 final size:211
Alignment explanation
Indices: 5350823--5351303 Score: 515
Period size: 212 Copynumber: 2.3 Consensus size: 211
5350813 GATTTATTCT
* * * * *
5350823 CAGTCATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGATT
1 CAGTCATTTTCATTTTTTGACTCATGGTTTAATCGCGGTCATTTTCATTTTTTGACTCATGGATT
* * *
5350888 AATCCTGATCATTTTTCTTTTTTTGATTGGTGCTTTAATCCTGGTTGTTTCTATTTTTTGACTTG
66 AATCCTGATCATTTTTCTTTTTTTCATTGGGGCTTTAATCCTGGTTGTTTCTATTTTCTGACTTG
* * * **
5350953 TGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATAGCTTAATCAGGATTATTTTCATTTTTTG
131 TGGTTTAATCTGGCTCATTTTCATTTTCTGACTCACAGCTTAATCAGGATCATTTTCATCTTCCG
*
5351018 ACTCATGGTTTAATCA
196 ACTCACGGTTTAATCA
* * * * * * *
5351034 TAGTCATTTTCATTTTTTGACTCGTGATCTAATCGTGGTCCTTTTTCATTTTTTGACTCGT-GAT
1 CAGTCATTTTCATTTTTTGACTCATGGTTTAATCGCGGT-CATTTTCATTTTTTGACTCATGGA-
* * *
5351098 TTAATCCTTATCATTTTTGTTTTTTTCA-TGGGGAGTTTAATCCCAATGG-T-TTTC-ATTTTCT
64 TTAATCCTGATCATTTTTCTTTTTTTCATTGGGG-CTTTAAT-CC--TGGTTGTTTCTATTTTCT
* ** * * **
5351159 GACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCACAGTTTAATCCCTG-TCATTTTCA
125 GACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCACAGCTTAAT-CAGGATCATTTTCA
*
5351223 TCTTCCGACTCACGGTTTAATCG
189 TCTTCCGACTCACGGTTTAATCA
* * ** *
5351246 CGGTCATTTTCATCTTCCGACTCACGGTTTAATCGCGGTCATTTTCATTTTTTTGACT
1 CAGTCATTTTCATTTTTTGACTCATGGTTTAATCGCGGTCATTTTCA-TTTTTTGACT
5351304 TACGATTTAA
Statistics
Matches: 219, Mismatches: 43, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
211 44 0.20
212 163 0.74
213 8 0.04
214 1 0.00
215 3 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (211 bp):
CAGTCATTTTCATTTTTTGACTCATGGTTTAATCGCGGTCATTTTCATTTTTTGACTCATGGATT
AATCCTGATCATTTTTCTTTTTTTCATTGGGGCTTTAATCCTGGTTGTTTCTATTTTCTGACTTG
TGGTTTAATCTGGCTCATTTTCATTTTCTGACTCACAGCTTAATCAGGATCATTTTCATCTTCCG
ACTCACGGTTTAATCA
Found at i:5351321 original size:36 final size:35
Alignment explanation
Indices: 5350792--5351384 Score: 177
Period size: 35 Copynumber: 16.8 Consensus size: 35
5350782 TAATCCCTCG
* * ** * * *
5350792 CATTTTCATTTTATGAGTCGTGATTTATTCTCAGT
1 CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
* * *
5350827 CATTTTCATTTTTTGACTCA-TAGTTTAATCTCGAT
1 CATTTTCATTTTTTGACTCACGA-TTTAATCGCGGT
* * * *
5350862 CATTTTCATTTTCTGACCCATGGA-TTAATC-CTGAT
1 CATTTTCATTTTTTGACTCA-CGATTTAATCGC-GGT
* * *** *
5350897 CATTTTTCTTTTTTTGATTGGTGCTTTAATC-CTGGT
1 CA-TTTTCATTTTTTGACTCACGATTTAATCGC-GGT
*** * *
5350933 --TGTTTCTATTTTTTGACTTGTGGTTTAATCTG-GCT
1 CAT-TTTC-ATTTTTTGACTCACGATTTAATC-GCGGT
* * * *
5350968 CATTTTCATTTTCTGACTCA-TAGCTTAATCAG-GAT
1 CATTTTCATTTTTTGACTCACGA-TTTAATC-GCGGT
* * * ***
5351003 TATTTTCATTTTTTGACTCATGGTTTAATCATAGT
1 CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
** * *
5351038 CATTTTCATTTTTTGACTCGTGATCTAATCGTGGT
1 CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
* ** **
5351073 CCTTTTTCATTTTTTGACTCGTGATTTAATC-CTTAT
1 -CATTTTCATTTTTTGACTCACGATTTAATCGC-GGT
** * *** * **
5351109 CATTTTTGTTTTTT-TCATGGGGAGTTTAATCCCAAT
1 CATTTTCATTTTTTGAC-TCACGA-TTTAATCGCGGT
** * *** *
5351145 GGTTTTCATTTTCTGACTTGTGGTTTAATCTG-GGT
1 CATTTTCATTTTTTGACTCACGATTTAATC-GCGGT
** * *
5351180 TGTTTTCATTTTTTGACTCAC-AGTTTAATCCCTGT
1 CATTTTCATTTTTTGACTCACGA-TTTAATCGCGGT
* ** *
5351215 CATTTTCATCTTCCGACTCACGGTTTAATCGCGGT
1 CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
* ** *
5351250 CATTTTCATCTTCCGACTCACGGTTTAATCGCGGT
1 CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
* *
5351285 CATTTTCATTTTTTTGACTTACGATTTAATCTCGGT
1 CATTTTCA-TTTTTTGACTCACGATTTAATCGCGGT
* ** * * *
5351321 CGTTTTTCATTTTTTGACTCGTGTTTTAATCACGAT
1 C-ATTTTCATTTTTTGACTCACGATTTAATCGCGGT
* * **
5351357 CATTGTCATTTCTTGACTCGTGATTTAA
1 CATTTTCATTTTTTGACTCACGATTTAA
5351385 ACCCGATCGC
Statistics
Matches: 428, Mismatches: 103, Indels: 54
0.73 0.18 0.09
Matches are distributed among these distances:
33 1 0.00
34 7 0.02
35 290 0.68
36 120 0.28
37 10 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (35 bp):
CATTTTCATTTTTTGACTCACGATTTAATCGCGGT
Found at i:5351401 original size:35 final size:33
Alignment explanation
Indices: 5351325--5351419 Score: 84
Period size: 35 Copynumber: 2.7 Consensus size: 33
5351315 CTCGGTCGTT
* *
5351325 TTTCATTTTTTGACTCGTGTTTTAATCACGATCA
1 TTTCA-TTTTTGACTCGTGATTTAAACACGATCA
*
5351359 TTGTCATTTCTTGACTCGTGATTTAAACCCGATCGCA
1 TT-TCATTT-TTGACTCGTGATTTAAACACGAT--CA
* *
5351396 -TTCATTTTCTGACTCATGGTTTAA
1 TTTCATTTT-TGACTCGTGATTTAA
5351420 TCCCAATCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
34 6 0.12
35 42 0.82
36 1 0.02
37 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (33 bp):
TTTCATTTTTGACTCGTGATTTAAACACGATCA
Found at i:5351514 original size:35 final size:34
Alignment explanation
Indices: 5351456--5353152 Score: 235
Period size: 35 Copynumber: 48.7 Consensus size: 34
5351446 TTTATCGTTC
* * * *
5351456 TCATTTTCTAACTCGTAGCTTAATTCTAGTCATTT
1 TCATTTTCTGACTCATGGTTTAA-TCTAGTCATTT
*
5351491 TCATTTCCTGACTCATGGTTTAATCCT-GTTCATTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAG-TCA-TTT
* ** *
5351527 TCTTTTTCTGACTGGTGGTTTAATCTCGATCA-TT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
*
5351561 TCTATTTTCTGACTCATGGTTTAATCTTAGTCGTTT
1 TC-ATTTTCTGACTCATGGTTTAATC-TAGTCATTT
* * * *
5351597 CCA-TTTCTGGCTCGTGCTTTAATCTAGGTCATTT
1 TCATTTTCTGACTCATGGTTTAATCTA-GTCATTT
* * * * **
5351631 TCTTTTTCTGACTCAAT-GTTTAACCCCACTTGTTT
1 TCATTTTCTGACTC-ATGGTTTAA-TCTAGTCATTT
** * **
5351666 TTGTTTTCTGACTCATGGTTTAATCCAGGTTGTTTT
1 TCATTTTCTGACTCATGGTTTAATCTA-G-TCATTT
* * * ** *
5351702 TCATTTTTTAACTCGTACTTTAATCGCAGTCATTT
1 TCATTTTCTGACTCATGGTTTAATC-TAGTCATTT
* * * * ***
5351737 TCA-TTTCTTGACTCATGATTCAAACTGGTCGCAT
1 TCATTTTC-TGACTCATGGTTTAATCTAGTCATTT
* * * **
5351771 TCATTTTCTAACTCGTGGTTTAGTCCCGATCA-TT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
** * **
5351805 T--TTTT-T---TCATTTTTTGATCGTTTTCATTT
1 TCATTTTCTGACTCATGGTTTAATC-TAGTCATTT
** * * * * *
5351834 TC--TGACT--CGT--GGTTTAATATC-AATCGTTT
1 TCATTTTCTGAC-TCATGGTTTA-ATCTAGTCATTT
* *
5351863 TCATTTTCTGACTCAAT-GTTTAATCTTGGTCCTTT
1 TCATTTTCTGACTC-ATGGTTTAATC-TAGTCATTT
* * *
5351898 TCCTTTTTCTAGA-TAATGGTTTAATCTCGGTCATTT
1 T-CATTTTCT-GACTCATGGTTTAATCT-AGTCATTT
* ** *
5351934 TCATTTTCTGACTCGTGGTTTAATCCTTTTCGTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* **
5351969 TCATTTGT-TGACT-AGTGATTTAATCCCGGTCATTTT
1 TCATTT-TCTGACTCA-TGGTTTAAT-CTAGTCA-TTT
* * * * *
5352005 TTATTTT-TGACTCGTGATTTAATCTCAGTCCTTG
1 TCATTTTCTGACTCATGGTTTAATCT-AGTCATTT
* * * *
5352039 CCA-TTTCTTGACTCATGATTTAATCCAGATTATTT
1 TCATTTTC-TGACTCATGGTTTAATCTAG-TCATTT
* * * * ** ** *
5352074 TCA-TTTCTTAACTCGTGATTTAAACCCGATTGTAT
1 TCATTTTC-TGACTCATGGTTTAATCTAG-TCATTT
* * * * *
5352109 TCATTTTTTGACTCCTGATTTAATCCTGGTCGTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* * *
5352144 TCATTTTTTGACTCATGGTTT-ATCTCGATCGTTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* * * **
5352178 TCATTTTCTGAGTCGTGGTTTAATCTCGATTTTTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* * * * **
5352213 TTATTTTCTAACTCGTAGTTTAATACGGGTCATTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* * ** **
5352248 TCATTTTTTGACTAACAGTTTAATCCCGATCATTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* * * * * *
5352283 TCATTTTTTAACTCGTGATTTAATTTCGATCATTTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCA-TTT
* * * * * **
5352319 TCGTTCTCTGA--CATGTGATTTAGTTTCGGTGGTTT
1 TCATTTTCTGACTCATG-G-TTTAATCT-AGTCATTT
* ** *
5352354 TGATTTTCTGACTCATAATTTATTCTCAGT-AGTTT
1 TCATTTTCTGACTCATGGTTTAATCT-AGTCA-TTT
* * *
5352389 TCGACTTT-TGA--CATGTGATTTAATATTGATCATTT
1 TC-ATTTTCTGACTCATG-G-TTTAATCTAG-TCATTT
* * **
5352424 TCATTTCTCT-AGCTCATGATTTAATGAC-GGTTGTTT
1 TCATTT-TCTGA-CTCATGGTTTAAT--CTAGTCATTT
* * ** * * * **
5352460 TAATTTTTTGACTTGTGATGTAATCTCGATGGTTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* * * *
5352495 TCATTTTTTTACTCACGGTTTAATCTTGATCATTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* * * * **
5352530 TCATTTTTTGGCTCGCT-GTTTAATCTCGGTTGTTT
1 TCATTTTCTGACTC-ATGGTTTAATCT-AGTCATTT
** * * * *
5352565 TGGTTTTCTAACTCATGATTTAATTTTGGTCATTT
1 TCATTTTCTGACTCATGGTTTAA-TCTAGTCATTT
* * * *
5352600 TCATTTTTTGACTTACGGTTTAATTCCCA-TCATTT
1 TCATTTTCTGACTCATGGTTTAA-T-CTAGTCATTT
*
5352635 T--TTTTCGCTGACTCATGATTTAATCCTAGTCATTT
1 TCATTTT--CTGACTCATGGTTTAAT-CTAGTCATTT
* * * * * **
5352670 TCATTTTTTTGATTCGTGATTTAATCCTTGTTGTTT
1 TCA-TTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* * * * * **
5352706 TCATTTTTTGACTCGTGATTTAATTTTGGTTGTTT
1 TCATTTTCTGACTCATGGTTTAA-TCTAGTCATTT
* * * *
5352741 TCATTATCTAAGACGC--GGTCTAATC-ACTCGCATTT
1 TCATTTTCT--GACTCATGGTTTAATCTAGT--CATTT
* * * *
5352776 TCATTTTATGACTCGTGGTTTATTCTCAGTAATTT
1 TCATTTTCTGACTCATGGTTTAATCT-AGTCATTT
* * *
5352811 TCATTTTTTGACTCATAGTTTAATCTCGATCATTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* *
5352846 TCATTTTCTGACCCATGGTTTAATCCT-GATCGTTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAG-TC-ATTT
* * ** * **
5352882 TCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* * *** * *
5352917 CCATTTTTTGACTTGCGGTTTAATTTGGCTCATTT
1 TCATTTTCTGACTCATGGTTTAATCTAG-TCATTT
* *
5352952 TCATTTTCTGACTCATGGCTTAATC-AGGATTATTT
1 TCATTTTCTGACTCATGGTTTAATCTA-G-TCATTT
* * *
5352987 TCATTTTTTGACTCGTAGTTTAATCCCTA-TCATTTT
1 TCATTTTCTGACTCATGGTTTAAT--CTAGTCA-TTT
* * * * ** * * *
5353023 TCTTTTTTTCATTGGTAGTTTAATCCGAATCATTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
* ** * *
5353058 TAATTTTCTGACTTGTGGTTTAATCCTGGTCGTTT
1 TCATTTTCTGACTCATGGTTTAAT-CTAGTCATTT
** * **
5353093 TCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTT
1 TCATTTTCTGACTCATGGTTTAATCT-AGTCATTT
* *
5353128 TCATTTTTTGACTCACGGTTTAATC
1 TCATTTTCTGACTCATGGTTTAATC
5353153 CCCATCGTTT
Statistics
Matches: 1219, Mismatches: 335, Indels: 216
0.69 0.19 0.12
Matches are distributed among these distances:
28 11 0.01
29 11 0.01
30 4 0.00
31 7 0.01
32 6 0.00
33 25 0.02
34 119 0.10
35 787 0.65
36 223 0.18
37 17 0.01
38 9 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (34 bp):
TCATTTTCTGACTCATGGTTTAATCTAGTCATTT
Found at i:5351638 original size:69 final size:70
Alignment explanation
Indices: 5351460--5351653 Score: 184
Period size: 69 Copynumber: 2.8 Consensus size: 70
5351450 TCGTTCTCAT
* * *
5351460 TTTCTAACTCGTAGC-TTAATTCTA-GTCATTTTCATTTCCTGACTCATGGTTTAATCCTGTTCA
1 TTTCTGACTCGT-GCTTTAA-TCTAGGTCATTTTCTTTTTCTGACTCATGGTTTAATCCTGTTCA
* **
5351523 TTTTTCTT
64 -GTTTCCA
* * * * *
5351531 TTTCTGACTGGTGGTTTAATCTCGATCA-TTTCTATTTTCTGACTCATGGTTTAATCTTAG-TC-
1 TTTCTGACTCGTGCTTTAATCTAGGTCATTTTCT-TTTTCTGACTCATGGTTTAATCCT-GTTCA
5351593 GTTTCCA
64 GTTTCCA
*
5351600 TTTCTGGCTCGTGCTTTAATCTAGGTCATTTTCTTTTTCTGACTCAAT-GTTTAA
1 TTTCTGACTCGTGCTTTAATCTAGGTCATTTTCTTTTTCTGACTC-ATGGTTTAA
5351654 CCCCACTTGT
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
69 44 0.44
70 15 0.15
71 41 0.41
72 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (70 bp):
TTTCTGACTCGTGCTTTAATCTAGGTCATTTTCTTTTTCTGACTCATGGTTTAATCCTGTTCAGT
TTCCA
Found at i:5351843 original size:18 final size:17
Alignment explanation
Indices: 5351808--5351873 Score: 55
Period size: 17 Copynumber: 3.8 Consensus size: 17
5351798 GATCATTTTT
*
5351808 TTTTCATTTTTTGATCG
1 TTTTCATTTTCTGATCG
5351825 TTTTCATTTTCTGACTCG
1 TTTTCATTTTCTGA-TCG
* * *
5351843 TGGTTT-AATATC-AATCG
1 T--TTTCATTTTCTGATCG
5351860 TTTTCATTTTCTGA
1 TTTTCATTTTCTGA
5351874 CTCAATGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
15 3 0.08
16 4 0.11
17 18 0.49
18 5 0.14
19 4 0.11
20 3 0.08
ACGTcount: A:0.17, C:0.15, G:0.12, T:0.56
Consensus pattern (17 bp):
TTTTCATTTTCTGATCG
Found at i:5352929 original size:106 final size:106
Alignment explanation
Indices: 5352491--5353331 Score: 370
Period size: 106 Copynumber: 8.0 Consensus size: 106
5352481 AATCTCGATG
* * * * * *
5352491 GTTTTCATTTTTTTACTCACGGTTTAATCTTGATCATTTTCATTTTTTGGCTCGCT-GTTTAAT-
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTC-ATGGTTTAATC
* * ** * * * * ** *
5352554 CTCGGTTG-TTTTGGTTTTCTAACTCATGATTTAATTTTGGTC
65 CT-GATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* * * * *
5352596 ATTTTCATTTTTTGACTTACGGTTTAAT-TCCCATCATTTT--TTTTCGCTGACTCATGATTTAA
1 GTTTTCATTTTTTGACTCACAGTTTAATCT-CGATCATTTTCATTTT--CTGACTCATGGTTTAA
* * * *
5352658 TCCT-AGTC-ATTTTCATTTTTTTGATTCGTGATTTAATCCTTGTT
63 TCCTGA-TCGTTTTTCA-TTTTTTGACTCGTGGTTTAATCCTGGTT
** * * * ** * * *
5352702 GTTTTCATTTTTTGACTC-GTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTCTAA
1 GTTTTCATTTTTTGACTCACAG-TTTAATCTCGATCATTTTCATTTTCT--GACTCATGGTTTAA
* * * * *
5352764 T-C--ACTCGCATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTA
63 TCCTGA-TCG-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
* * *
5352807 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCC
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5352872 TGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTT
66 TGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
* ** * * * * * *
5352913 GTTTCCATTTTTTGACTTGCGGTTTAATTTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCA
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5352978 GGAT--TATTTTCATTTTTTGACTCGTAGTTTAATCCCT-ATCAT
66 TGATCGT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGGT--T
* * * *** * **
5353020 -TTTTCTTTTTTTCATTGGTAGTTTAATC-CGAATCATTTTAATTTTCTGACTTGTGGTTTAATC
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCG-ATCATTTTCATTTTCTGACTCATGGTTTAATC
* * *
5353083 CTGGTCG-TTTTCATTTTCTGACTTGTGGTTTAAT-CTGGGTT
65 CTGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTT
* * * * ** * ** *
5353124 GTTTTCATTTTTTGACTCACGGTTTAATCCCCATCGTTTTGGTCTTCCAACTCACGGTTTAATCG
1 GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATC-
* *** * * *
5353189 C-GATC-ATTTTCATTTTTTTGACTTACGATTTAAT-TTCGGTA
65 CTGATCGTTTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GGTT
* * * * *
5353230 ATTCTTCATTTTTTTGACTCA-AGTTTTTATCACGATCATTTTCA-TTTCTTAACTCATGATTTA
1 GTT-TTCA-TTTTTTGACTCACAG-TTTAATCTCGATCATTTTCATTTTC-TGACTCATGGTTTA
* * ** * *
5353293 AACCCGATCG-CATTCATTTTCTGACTCATGGTTTAATCC
62 ATCCTGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCC
5353332 CAATCATTTC
Statistics
Matches: 549, Mismatches: 142, Indels: 87
0.71 0.18 0.11
Matches are distributed among these distances:
103 8 0.01
104 13 0.02
105 191 0.35
106 247 0.45
107 35 0.06
108 55 0.10
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (106 bp):
GTTTTCATTTTTTGACTCACAGTTTAATCTCGATCATTTTCATTTTCTGACTCATGGTTTAATCC
TGATCGTTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTT
Found at i:5352929 original size:141 final size:141
Alignment explanation
Indices: 5352777--5353048 Score: 325
Period size: 141 Copynumber: 1.9 Consensus size: 141
5352767 CTCGCATTTT
* * * *
5352777 CATTTTATGACTCGTGGTTT-ATTCTCAG-TAATTTTCATTTTTTGACTCATAGTTTAATCTCGA
1 CATTTTATGACTCGCGGTTTAATT-T-AGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGA
* * * *
5352840 TCATTTTCATTTTCTGACCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTA
64 TCATTTTCATTTTCTGACCCATAGTTTAATCCCT-ATCATTTTTCTTTTTTTCACTGGTAGTTTA
5352904 ATCCTGGTTGTTTC
128 ATCCTGGTTGTTTC
* * * * * * *
5352918 CATTTTTTGACTTGCGGTTTAATTTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATT
1 CATTTTATGACTCGCGGTTTAATTTAGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGATC
* * * *
5352983 ATTTTCATTTTTTGACTCGTAGTTTAATCCCTATCATTTTTCTTTTTTTCATTGGTAGTTTAATC
66 ATTTTCATTTTCTGACCCATAGTTTAATCCCTATCATTTTTCTTTTTTTCACTGGTAGTTTAATC
5353048 C
131 C
5353049 GAATCATTTT
Statistics
Matches: 109, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
140 1 0.01
141 102 0.94
142 6 0.06
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (141 bp):
CATTTTATGACTCGCGGTTTAATTTAGCTAATTTTCATTTTCTGACTCATAGCTTAATCACGATC
ATTTTCATTTTCTGACCCATAGTTTAATCCCTATCATTTTTCTTTTTTTCACTGGTAGTTTAATC
CTGGTTGTTTC
Found at i:5353154 original size:141 final size:141
Alignment explanation
Indices: 5352807--5353163 Score: 387
Period size: 141 Copynumber: 2.5 Consensus size: 141
5352797 ATTCTCAGTA
* * * ** * * *
5352807 ATTTTCATTTTTTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAAT-C
1 ATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCC
* * * ** * *
5352871 CTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGCGGT
66 CT-ATCGTTTTTCTTTTTTTCACTGGTAGTTTAATCCTGATCATTTCAATTTTCTGACTTGCGGT
*
5352936 TTAATTTGGCTC
130 TTAATCTGGCTC
* *
5352948 ATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCGTAGTTTAATCC
1 ATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCC
* * * *
5353013 CTATCATTTTTCTTTTTTTCATTGGTAGTTTAATCC-GAATCATTTTAATTTTCTGACTTGTGGT
66 CTATCGTTTTTCTTTTTTTCACTGGTAGTTTAATCCTG-ATCATTTCAATTTTCTGACTTGCGGT
5353077 TTAATCCTGG-TC
130 TTAAT-CTGGCTC
* ** * * * * *
5353089 GTTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCACGGTTTAATCC
1 ATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCC
*
5353154 CCATCGTTTT
66 CTATCGTTTT
5353164 GGTCTTCCAA
Statistics
Matches: 179, Mismatches: 34, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
140 1 0.01
141 172 0.96
142 6 0.03
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.52
Consensus pattern (141 bp):
ATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCC
CTATCGTTTTTCTTTTTTTCACTGGTAGTTTAATCCTGATCATTTCAATTTTCTGACTTGCGGTT
TAATCTGGCTC
Found at i:5353163 original size:35 final size:35
Alignment explanation
Indices: 5351820--5354607 Score: 666
Period size: 35 Copynumber: 79.3 Consensus size: 35
5351810 TTCATTTTTT
* * * **
5351820 GATCGTTTTCATTTTCTGACTCGTGGTTTAATATC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * **
5351855 AATCGTTTTCATTTTCTGACTCAAT-GTTTAATCTT
1 GATCATTTTCATTTTTTGACTC-ATGGTTTAATCCC
* * * * *
5351890 GGTCCTTTTCCTTTTTCTAGA-TAATGGTTTAATCTC
1 GATCATTTTCATTTTT-T-GACTCATGGTTTAATCCC
* * * *
5351926 GGTCATTTTCATTTTCTGACTCGTGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * * *
5351961 TTTCGTTTTCATTTGTTGACT-AGTGATTTAATCCC
1 GATCATTTTCATTTTTTGACTCA-TGGTTTAATCCC
* * * * *
5351996 GGTCATTTT-TTATTTTTGACTCGTGATTTAATCTC
1 GATCATTTTCAT-TTTTTGACTCATGGTTTAATCCC
* ** * * *
5352031 -AGTCCTTGCCATTTCTTGACTCATGATTTAATCCA
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * * *
5352066 GATTATTTTCATTTCTTAACTCGTGATTTAAACCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * * * *
5352101 GATTGTATTCATTTTTTGACTCCTGATTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352136 GGTCGTTTTCATTTTTTGACTCATGGTTT-ATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * *
5352170 GATCGTTTTCATTTTCTGAGTCGTGGTTTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * * * * * * *
5352205 GATTTTTTTTATTTTCTAACTCGTAGTTTAATACG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * **
5352240 GGTCATTTTCATTTTTTGACTAACAGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * **
5352275 GATCATTTTCATTTTTTAACTCGTGATTTAATTTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * **
5352310 GATCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTTTGACTCATG-G-TTTAATCCC
* ** * * ** * *
5352346 GGTGGTTTTGATTTTCTGACTCATAATTTATTCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* ***
5352381 -AGT-AGTTTTCGA-CTTTTGA--CATGTGATTTAATATT
1 GA-TCA-TTTTC-ATTTTTTGACTCATG-G-TTTAATCCC
* * **
5352416 GATCATTTTCATTTCTCT-AGCTCATGATTTAATGAC
1 GATCATTTTCATTT-TTTGA-CTCATGGTTTAATCCC
* ** * ** * * *
5352452 GGTTGTTTTAATTTTTTGACTTGTGATGTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * * **
5352487 GATGGTTTTCATTTTTTTACTCACGGTTTAATCTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352522 GATCATTTTCATTTTTTGGCTCGCT-GTTTAATCTC
1 GATCATTTTCATTTTTTGACTC-ATGGTTTAATCCC
* ** ** * * * ***
5352557 GGTTGTTTTGGTTTTCTAACTCATGATTTAATTTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352592 GGTCATTTTCATTTTTTGACTTACGGTTTAATTCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAA-TCCC
* *
5352628 -ATCATTTT--TTTTCGCTGACTCATGATTTAAT-CC
1 GATCATTTTCATTTT--TTGACTCATGGTTTAATCCC
* * * * *
5352661 TAGTCATTTTCATTTTTTTGATTCGTGATTTAATCCTT
1 GA-TCATTTTCA-TTTTTTGACTCATGGTTTAATCC-C
** * * ***
5352699 G-TTGTTTTCATTTTTTGACTCGTGATTTAATTTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** ** * *
5352733 GGTTGTTTTCATTATCTAAGACGC--GGTCTAATCACTC
1 GATCATTTTCATT-T-TTTGACTCATGGTTTAATC-C-C
* * * *
5352770 G--CATTTTCATTTTATGACTCGTGGTTTATTCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352803 -AGTAATTTTCATTTTTTGACTCATAGTTTAATCTC
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352838 GATCATTTTCATTTTCTGACCCATGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * ** *
5352873 GATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCT
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** * *** ***
5352909 GGTTGTTTCCATTTTTTGACTTGCGGTTTAATTTG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * **
5352944 GCTCATTTTCATTTTCTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5352979 GATTATTTTCATTTTTTGACTCGTAGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * ** *
5353014 TATCATTTTTCTTTTTTTCATTGGTAGTTTAAT-CC
1 GATCA-TTTTCATTTTTTGACTCATGGTTTAATCCC
* * ** *
5353049 GAATCATTTTAATTTTCTGACTTGTGGTTTAATCCT
1 G-ATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * ** **
5353085 GGTCGTTTTCATTTTCTGACTTGTGGTTTAATCTG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** *
5353120 GGTTGTTTTCATTTTTTGACTCACGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * ** * *** * *
5353155 CATCGTTTTGGTCTTCCAACTCACGGTTTAATCGC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * **
5353190 GATCATTTTCATTTTTTTGACTTACGATTTAATTTC
1 GATCATTTTCA-TTTTTTGACTCATGGTTTAATCCC
* * * * * *
5353226 GGTAATTCTTCATTTTTTTGACTCAAGTTTTTATCAC
1 GATCATT-TTCA-TTTTTTGACTCATGGTTTAATCCC
* * * *
5353263 GATCATTTTCATTTCTTAACTCATGATTTAAACCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
*** *
5353298 GATCGCATTCATTTTCTGACTCATGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * *
5353333 AATCATTTCTTTTCATTTTTTTATCATTCTCAT-TTTCTAA-CTC
1 GATCA----TTTTCA--TTTTT-TGA--CTCATGGTT-TAATCCC
* * * *
5353376 GTAGC-TTAATTCTAGTCATTTTCTAACTCGTGGTTTAGTCCC
1 G-ATCATT--TTC-A-T--TTTT-TGACTCATGGTTTAATCCC
5353418 GATCATTTT--TTTTTT-A-T--T--TTT--T---
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** * *
5353440 GATCGTTTTCATTTCCTGACTCGTGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* *** * * *
5353475 AAAGGTTTTCATTTTCTGACTTAAT-GTTTAATCTC
1 GATCATTTTCATTTTTTGAC-TCATGGTTTAATCCC
* * *
5353510 GATCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 GATCATTTTCATTTTT-TGA-CTCA-TGGTTTAATCCC
* * ** *
5353546 GGTCATTTTCATTTTCTGACTCATAATTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * **
5353581 TAT-AGTTTTCAGTTTTTGACT-AGTGACTTAATCCC
1 GATCA-TTTTCATTTTTTGACTCA-TGGTTTAATCCC
* * *
5353616 GATCATTTT--TTATTTCTGACTCGTGATTTAATCTC
1 GATCATTTTCATT-TTT-TGACTCATGGTTTAATCCC
* * * * *
5353651 AATCGTTGTCATTTCTTGACTCATGATTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * ** * *
5353686 GATTGTTTTCATTTTTTAACTCGCGATTTAAACCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
** * *
5353721 GATTGTATTCATTTTTTGACTCGTGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5353756 AATCGTTTTCATTTTTTGACTCATGGTTTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *** * *
5353791 GATCGTTTTCATTTTTTGGCTCGCAGATTAATCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * * * ***
5353826 AATCTTTTTTATTTTCTAACTCATAGTTTAATAGG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5353861 GGTCATTTTCATTTTTTGACTTACGGTTTAATTCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAA-TCCC
* * *** * *
5353897 -ATCGCTTTT-GTTCCCTGACTCATGATTTAATCCT
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * * *
5353931 GGTCATTTTTATTTTTTTGATTCGTGATTTAATCCTT
1 GATCATTTTCA-TTTTTTGACTCATGGTTTAATCC-C
** * * * ***
5353968 G-TTGTTTTCATTTTCTGACTCGTGATTTAATTTG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** * ** *
5354002 GGTTGTTTTCACTATCTAAGA-TGC--GGTCTAATCCC
1 GATCATTTTCA-T-TTTTTGACT-CATGGTTTAATCCC
*** ** * * *
5354037 TCGCATTTTCATTTTAAGACTCGTGGTTTATTCTC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5354072 -AGTCATTTTCATTTTCTGACTCATAGTTTAATCTC
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * **
5354107 GATCATTTTCATTTTCTGA-TCCATGGTTCAATCTT
1 GATCATTTTCATTTTTTGACT-CATGGTTTAATCCC
* * * ** **
5354142 AATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCTT
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCC
* ** * *** *
5354178 GGTTGTTTCCATTTTTTGACTTGCGGTTTAATCCG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * * **
5354213 GCTCGTTTTAATTTTCTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5354248 GATTATTTTCATTTTTTGACTCGTGGTTTAATCAC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5354283 TATCATTTTTCCTTTTTTGA-TGGAAT--TTTAATCCC
1 GATCA-TTTTCATTTTTTGACT--CATGGTTTAATCCC
* * * ** *
5354318 AATCGTTTTCATTTTCTGACTTGTCGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * *
5354353 GA-CGGTTTTTATTTTCTGACTTATGGTTTAATCTC
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCC
* * *
5354388 GATCGTTTTCTTTTTTTGACTCACGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * ** * * *
5354423 TG-TCCTTTTCGTCCTTCGACTCACGGTTTAATCGC
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * *
5354458 GGTCATTTTCATTTTTTTGACTTATGATTTAATCTC
1 GATCATTTTCA-TTTTTTGACTCATGGTTTAATCCC
* * * **
5354494 GATCGTTCTTCATTTTTTGACTCGTGTTTTAATCAT
1 GATCATT-TTCATTTTTTGACTCATGGTTTAATCCC
* * * *
5354530 GATCGTTTTCATTTTCTTGACTCGTGATTTAAACCCC
1 GATCATTTTCATTTT-TTGACTCATGGTTT-AATCCC
***
5354567 GATCGCATTCA-TTTTTGACTCATGG-TTAAT-CC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
*
5354599 AATCATTTT
1 GATCATTTT
5354608 TCTTTTTCAT
Statistics
Matches: 2030, Mismatches: 585, Indels: 279
0.70 0.20 0.10
Matches are distributed among these distances:
22 8 0.00
24 4 0.00
25 2 0.00
26 1 0.00
27 3 0.00
28 1 0.00
29 1 0.00
30 3 0.00
31 1 0.00
32 9 0.00
33 28 0.01
34 78 0.04
35 1421 0.70
36 341 0.17
37 67 0.03
38 8 0.00
39 6 0.00
40 2 0.00
41 16 0.01
42 10 0.00
43 10 0.00
44 10 0.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.50
Consensus pattern (35 bp):
GATCATTTTCATTTTTTGACTCATGGTTTAATCCC
Found at i:5353274 original size:36 final size:36
Alignment explanation
Indices: 5353181--5353293 Score: 102
Period size: 37 Copynumber: 3.1 Consensus size: 36
5353171 CAACTCACGG
* * *
5353181 TTTAATCGCGATCATTTTCATTTTTTTGACTTACGA
1 TTTAATCACGATCATTTTCATTTTTTTGACTCAAGA
** * * *
5353217 TTTAATTTCGGTAATTCTTCATTTTTTTGACTCAAGT
1 TTTAATCACGATCATT-TTCATTTTTTTGACTCAAGA
* * * *
5353254 TTTTATCACGATCATTTTCA-TTTCTTAACTCATGA
1 TTTAATCACGATCATTTTCATTTTTTTGACTCAAGA
5353289 TTTAA
1 TTTAA
5353294 ACCCGATCGC
Statistics
Matches: 59, Mismatches: 17, Indels: 3
0.75 0.22 0.04
Matches are distributed among these distances:
35 15 0.25
36 16 0.27
37 28 0.47
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.51
Consensus pattern (36 bp):
TTTAATCACGATCATTTTCATTTTTTTGACTCAAGA
Found at i:5353410 original size:85 final size:86
Alignment explanation
Indices: 5353306--5353463 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 86
5353296 CCGATCGCAT
* * *
5353306 TCATTTTCTGACTCATGGTTTAATCCCAATCA-TTTCTTTTCATTTTTTTATCATTCTCATTTTC
1 TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTCTTTTCATTTTTTGATCATTCTCATTTCC
5353370 TAACTCGTAGCTTAATTCTAG
66 TAACTCGTAGCTTAATTCTAG
* * * * * * *
5353391 TCATTTTCTAACTCGTGGTTTAGTCCCGATCATTTTTTTTTTATTTTTTGATCGTTTTCATTTCC
1 TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTCTTTTCATTTTTTGATCATTCTCATTTCC
*
5353456 TGACTCGT
66 TAACTCGT
5353464 GGTTTAATCC
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 28 0.46
86 33 0.54
ACGTcount: A:0.18, C:0.20, G:0.09, T:0.53
Consensus pattern (86 bp):
TCATTTTCTAACTCATGGTTTAATCCCAATCATTTTCTTTTCATTTTTTGATCATTCTCATTTCC
TAACTCGTAGCTTAATTCTAG
Found at i:5354740 original size:34 final size:34
Alignment explanation
Indices: 5354657--5354755 Score: 101
Period size: 35 Copynumber: 2.9 Consensus size: 34
5354647 CTTAATTCAG
* *
5354657 TCATTTTCATTTCCTGACTCACGGTTTAATCCTGT
1 TCATTTTCATTT-CTGACTCACGGTTTAATCCCGA
* * ***
5354692 TTATTTTTCTTTTCTGACTGGTGGTTTAATCCCGA
1 TCA-TTTTCATTTCTGACTCACGGTTTAATCCCGA
*
5354727 TCATTTTCATTTCTGACTCATGG-TTAATC
1 TCATTTTCATTTCTGACTCACGGTTTAATC
5354756 TTAGTCGTTT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
33 6 0.12
34 17 0.33
35 21 0.40
36 8 0.15
ACGTcount: A:0.17, C:0.21, G:0.13, T:0.48
Consensus pattern (34 bp):
TCATTTTCATTTCTGACTCACGGTTTAATCCCGA
Found at i:5354837 original size:35 final size:35
Alignment explanation
Indices: 5354804--5354878 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
5354794 GTCATTTTTT
* *
5354804 TTTTCTGACTCAATGTTTAATCCCACTTGTTTTTCG
1 TTTTCTGACTC-ATGGTTAATCCAACTTGTTTTTCG
* * *
5354840 TTTTCTGACTCGTGGTTAATCCAAGTTGTTTTTCA
1 TTTTCTGACTCATGGTTAATCCAACTTGTTTTTCG
5354875 TTTT
1 TTTT
5354879 TAACTCGTAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 23 0.68
36 11 0.32
ACGTcount: A:0.16, C:0.19, G:0.13, T:0.52
Consensus pattern (35 bp):
TTTTCTGACTCATGGTTAATCCAACTTGTTTTTCG
Found at i:5354894 original size:35 final size:35
Alignment explanation
Indices: 5354819--5354896 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
5354809 TGACTCAATG
* * * *
5354819 TTTAATCCCACTTGTTTTTCGTTTTCTGACTCGTG
1 TTTAATCCAACTTGTTTTTCATTTTCTAACTCGTC
* *
5354854 GTTAATCCAAGTTGTTTTTCATTTT-TAACTCGTAC
1 TTTAATCCAACTTGTTTTTCATTTTCTAACTCGT-C
5354889 TTTAATCC
1 TTTAATCC
5354897 CAGTATTTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
34 7 0.20
35 28 0.80
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.50
Consensus pattern (35 bp):
TTTAATCCAACTTGTTTTTCATTTTCTAACTCGTC
Found at i:5355143 original size:35 final size:35
Alignment explanation
Indices: 5354986--5356745 Score: 648
Period size: 35 Copynumber: 50.0 Consensus size: 35
5354976 TTTCATTTTT
* * * *
5354986 TGATCGTTTTCATTTTCTAACTTGTGGTTTAAT-A
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
5355020 TCAATCGTTTTCGTTTTCTAACTCAAT-GTTTAAT-C
1 T-GATCGTTTTCATTTTTTGACTC-GTGGTTTAATCC
* * * *
5355055 TCGATTGTTTTCTTTTTTCTGGCTAGTGGTTTAATCC
1 T-GATCGTTTTCATTTTT-TGACTCGTGGTTTAATCC
* *
5355092 CGATCATTTTCATTTTTTGACTCGTGGTTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5355127 TTATCGTTTTCATTTTTTGAC-CAGTGATTTAATCC
1 TGATCGTTTTCATTTTTTGACTC-GTGGTTTAATCC
* * * *
5355162 CGATCATTTT--TTATTTCTGACTCATGATTTAAT-C
1 TGATCGTTTTCATT-TTT-TGACTCGTGGTTTAATCC
* * * *
5355196 TCAGTCGTTATCATTTCTTGACT-GATGATTTAATCC
1 TGA-TCGTTTTCATTTTTTGACTCG-TGGTTTAATCC
* * * * *** * *
5355232 CGATTGTTTTCATTTCTTAACTTACGATTTAAACC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5355267 CGATTGTATTCATTTTTTGACTCGTGGTTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
5355302 CGGTCGTTCTCATTTTTTGACTAGTGATTTAATCCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * *
5355338 TG-TCATTTTTTATTTTTAG-CTCGTGATTTAAT-C
1 TGATC-GTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * * *
5355371 TCAGTTGTTGTCATTTCTTGACTCATGATTTAATCT
1 TGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
5355407 TGATTGTTTTCATTTCTTAACTCGCGTTTTAAACC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5355442 CGATCGTATTCATTTTTTGACTCGTGATTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5355477 TGGTCGTTTTTATTTTTTGACTCATGGTTTAAT-C
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* **
5355511 TCGATCGTTTTCATTTTCTGACTCACGGTTTAAT-C
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * * *
5355546 TCAATCATTTTTATTTTCTAACTCGTAGTTTAATAC
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * ****
5355582 GGGTCATTTTCATTTTTTGACTAACAGTTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
5355617 CGATCATTTTTATTTTTTAACTCGTGATTTAAT-T
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * * *
5355651 TCGATCATTTTTCGTTCTCTGACAT-GTGATTTAGT-T
1 T-GATC-GTTTTCATTTTTTGAC-TCGTGGTTTAATCC
* * * * * * * *
5355687 TCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTT
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATC-C
* * * *
5355724 TG-TAGTTTTTGA-TTTTTGACAT-GTGATTTAAT-A
1 TGATCG-TTTTCATTTTTTGAC-TCGTGGTTTAATCC
* * * * *
5355757 TCGATCATTTTCATTTCTCTGACTCATGATTTAATGAC
1 T-GATCGTTTTCATTT-TTTGACTCGTGGTTTAAT-CC
* * * * * *
5355795 -GGTTGTTTTTCAGTTTTTGACTTGTGATGTAAT-C
1 TGATCG-TTTTCATTTTTTGACTCGTGGTTTAATCC
* ***
5355829 TCGATGGTTTTCATTTTTTGACTTACGGTTTAATCC
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5355865 TGATCATTTTCATTATTTGACTCGTGGTTTAAT-C
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * ** * * ** * **
5355899 TCGGTTGTTTTGGTTTTCTAACTCACGATTTAATTT
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * ***
5355935 TGGTCCTTTTCATTTTTTGACTTACGGTTTAATTCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAA-TCC
* * * *
5355971 -CATCGCTTTT--TTTCATTGACTCATGATTTAATCC
1 TGATCG-TTTTCATTT-TTTGACTCGTGGTTTAATCC
* * * *
5356005 T-AGTCATTTTCATTTTTTTGATTCATGATTTAATCC
1 TGA-TCGTTTTCA-TTTTTTGACTCGTGGTTTAATCC
* * * **
5356041 TCG-TTGTTTTCATTTTCTGACTCGTGATTTAATTT
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * ** * *
5356076 TGGTTGTTTTCATTATCTAAGACGCGGTCTAATCCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * *
5356112 TCG--CATTTTCATTTTATGACTCATGGTTT-ATTC
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* ** * * *
5356145 TCAGTAATTTTCATTTTTTAACTCATAGTTTAAT-C
1 TGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * *
5356180 TCGATCATTTTCATTTTCTGACCCATGGTTTAATCC
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5356216 TGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 TGATCG-TTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * *
5356252 TGGTTGTTTCCATTTTTTGACTTGCGGTTTAAT-C
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * * * *
5356286 TGGCTCGTTTTCATTTTCTGGCTCATGGCTTAATCA
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* ** * * *
5356322 GGATTATATTCATTTTTTGACTCATGGTTTAATCA
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * *
5356357 T-AGTCATTTTCATTTTTTGACTCGTGGTCTAATCG
1 TGA-TCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* *
5356392 TGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCC
1 TGAT-CGTTTTCATTTTTTGACTCGTGGTTTAAT-CC
* * * * *
5356429 T-ATCATTTTTCATTTTTTCATTGGTAGTTTAATCC
1 TGATC-GTTTTCATTTTTTGACTCGTGGTTTAATCC
** * * *
5356464 CAATCATTTTCATTTTCTGACTTGTGGTTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
** * *
5356499 TGGCCGTTTTCATTTTCTGACTTGTGGTTTAAT-C
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* * * **
5356533 TAGGTTGTTTTGATTTTTTGACTCACGGTTTAATCCC
1 T-GATCGTTTTCATTTTTTGACTCGTGGTTTAAT-CC
* **
5356570 TG-TCCTTTTCATTTTTTGACTCACGGTTTAATCGC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATC-C
* * ** *
5356605 -GGTCATTTTCATTTTTTTGACTTATGATTTAAT-C
1 TGATCGTTTTCA-TTTTTTGACTCGTGGTTTAATCC
* * *
5356639 TCGATCGTTCTTCACTTTTTGACTCGAGTTTTAATCAC
1 T-GATCGTT-TTCATTTTTTGACTCGTGGTTTAATC-C
* * * *
5356677 -GATCATTTTCATTTCTTGACTCGTGATTTAAACC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
* ** *
5356711 CGATCGCATTCATTTTTTGACTCATGGTTTAATCC
1 TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
5356746 CAATCTTTTT
Statistics
Matches: 1310, Mismatches: 332, Indels: 167
0.72 0.18 0.09
Matches are distributed among these distances:
33 7 0.01
34 51 0.04
35 946 0.72
36 279 0.21
37 26 0.02
38 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (35 bp):
TGATCGTTTTCATTTTTTGACTCGTGGTTTAATCC
Found at i:5355543 original size:105 final size:105
Alignment explanation
Indices: 5355081--5356745 Score: 723
Period size: 105 Copynumber: 15.8 Consensus size: 105
5355071 TTCTGGCTAG
* * * **
5355081 TGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTG
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
* * *
5355146 AC-CAGTGATTTAATCCCGATCATTTT--TTATTTCTGACTCA
66 ACTC-GTGATTTAATCCTGGTCGTTTTCATT-TTT-TGACTCA
* * * * * * *
5355186 TGATTTAATCTC-AGTCGTTATCATTTCTTGACTGATGATTTAATCCCGATTGTTTTCATTTCTT
1 TGGTTTAATCTCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTT
* *** * * * * * *
5355250 AACTTACGATTTAAACCCGATTGTATTCATTTTTTGACTCG
65 GACTCGTGATTTAATCCTGGTCGTTTTCATTTTTTGACTCA
* * * * * *
5355291 TGGTTTAATCCCGGTCGTTCTCATTTTTTGACT-AGTGATTTAATCCCTG-TCATTTTTTATTTT
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCA-TGGTTTAATCCC-GATC-GTTTTCATTTT
* * * * *
5355354 TAG-CTCGTGATTTAAT-CTCAGTTGTTGTCATTTCTTGACTCA
63 TTGACTCGTGATTTAATCCT-GGTCGTTTTCATTTTTTGACTCA
* * * * * ** * * *
5355396 TGATTTAATCTTGATTGTTTTCATTTCTTAACTCGCGTTTTAAACCCGATCGTATTCATTTTTTG
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
*
5355461 ACTCGTGATTTAATCCTGGTCGTTTTTATTTTTTGACTCA
66 ACTCGTGATTTAATCCTGGTCGTTTTCATTTTTTGACTCA
* * * * * * * *
5355501 TGGTTTAATCTCGATCGTTTTCATTTTCTGACTCACGGTTTAATCTCAATCATTTTTATTTTCTA
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
* * * *
5355566 ACTCGT-AGTTTAATACGGGTCATTTTCATTTTTTGACTAA
66 ACTCGTGA-TTTAATCCTGGTCGTTTTCATTTTTTGACTCA
** * * * * * * ** * * * *
5355606 CAGTTTAATCCCGATCATTTTTATTTTTTAACTCGTGATTTAATTTCGATCATTTTTCGTTCTCT
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATC-GTTTTCATTTTTT
* * * * *
5355671 GACAT-GTGATTTAGT-TTCGGTGGTTTTGATTTTCTGACTCA
65 GAC-TCGTGATTTAATCCT-GGTCGTTTTCATTTTTTGACTCA
* * * * * ** *
5355712 TGATTTATTCTTTG-TAGTTTTTGA-TTTTTGA--CATGTGATTTAATATCGATCATTTTCATTT
1 TGGTTTAATC-TCGATCG-TTTTCATTTTTTGACTCATG-G-TTTAATCCCGATCGTTTTCATTT
* * * * * **
5355773 CTCTGACTCATGATTTAATGAC-GGTTGTTTTTCAGTTTTTGACTTG
62 -TTTGACTCGTGATTTAAT-CCTGGTCG-TTTTCATTTTTTGACTCA
* * * * * * * *
5355819 TGATGTAATCTCGATGGTTTTCATTTTTTGACTTACGGTTTAATCCTGATCATTTTCATTATTTG
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
* * ** * *
5355884 ACTCGTGGTTTAAT-CTCGGTTGTTTTGGTTTTCTAACTCA
66 ACTCGTGATTTAATCCT-GGTCGTTTTCATTTTTTGACTCA
* * * * * * * * *
5355924 CGATTTAATTTTGGTCCTTTTCATTTTTTGACTTACGGTTTAATTCCC-ATCGCTTTT--TTTCA
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAA-TCCCGATCG-TTTTCATTT-T
* * * *
5355986 TTGACTCATGATTTAATCCTAGTCATTTTCATTTTTTTGATTCA
63 TTGACTCGTGATTTAATCCTGGTCGTTTTCA-TTTTTTGACTCA
* * * * * *** * *
5356030 TGATTTAATCCTCG-TTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCT
1 TGGTTTAAT-CTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATT-T-T
** * * * * *
5356094 AAGACGCG-G-TCTAATCCCTCG-CATTTTCATTTTATGACTCA
63 TTGACTCGTGATTTAAT-CCTGGTCGTTTTCATTTTTTGACTCA
* ** * * * * *
5356135 TGGTTTATTCTC-AGTAATTTTCATTTTTTAACTCATAGTTTAATCTCGATCATTTTCATTTTCT
1 TGGTTTAATCTCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTT
* * * * * **
5356199 GACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGG
65 GACTCGTGATTTAATCCTGGTCG-TTTTCATTTTTTGACTCA
* * * *** ** * *
5356241 TGGTTTAATC-CTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTGGCTCGTTTTCATTTTCT
1 TGGTTTAATCTC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTT
* * ** * ** *
5356305 GGCTCATGGCTTAAT-CAGGATTATATTCATTTTTTGACTCA
65 GACTCGTGATTTAATCCTGG-TCGTTTTCATTTTTTGACTCA
* * * * ** * *
5356346 TGGTTTAATCATAG-TCATTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTT
1 TGGTTTAATC-TCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGAT-CGTTTTCATTTTT
* * * * * **
5356410 TGACTCGTGGTTTAATCCCT-ATCATTTTTCATTTTTTCATTGG
64 TGACTCGTGATTTAAT-CCTGGTC-GTTTTCATTTTTTGACTCA
* * * * * ** * ** *
5356453 TAGTTTAATCCCAATCATTTTCATTTTCTGACTTGTGGTTTAATCCTGGCCGTTTTCATTTTCTG
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
* * * *
5356518 ACTTGTGGTTTAAT-CTAGGTTGTTTTGATTTTTTGACTCA
66 ACTCGTGATTTAATCCT-GGTCGTTTTCATTTTTTGACTCA
* * * * * * *
5356558 CGGTTTAATCCCTG-TCCTTTTCATTTTTTGACTCACGGTTTAATCGCGGTCATTTTCATTTTTT
1 TGGTTTAATCTC-GATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCA-TTTTT
** * *
5356622 TGACTTATGATTTAAT-CTCGATCGTTCTTCACTTTTTGACTCGA
64 TGACTCGTGATTTAATCCT-GGTCGTT-TTCATTTTTTGACTC-A
* * * * * * * **
5356666 -GTTTTAATCACGATCATTTTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTG
1 TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
* *
5356730 ACTCATGGTTTAATCC
66 ACTCGTGATTTAATCC
5356746 CAATCTTTTT
Statistics
Matches: 1162, Mismatches: 330, Indels: 134
0.71 0.20 0.08
Matches are distributed among these distances:
103 5 0.00
104 31 0.03
105 581 0.50
106 357 0.31
107 177 0.15
108 9 0.01
109 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (105 bp):
TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCCGATCGTTTTCATTTTTTG
ACTCGTGATTTAATCCTGGTCGTTTTCATTTTTTGACTCA
Found at i:5355851 original size:71 final size:70
Alignment explanation
Indices: 5355670--5355851 Score: 184
Period size: 71 Copynumber: 2.6 Consensus size: 70
5355660 TTTCGTTCTC
* * * * * * *** *
5355670 TGACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTTTGTAGTTTTTG
1 TGACATGTGATGTAATATCGATGGTTTTCATTTTCTGACTCATGATTTAATCACGGTAGTTTTTC
5355735 ATTTT
66 ATTTT
* ** * *
5355740 TGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTT
1 TGACATGTGATGTAATATCGATGGTTTTCATTT-TCTGACTCATGATTTAATCACGGTAGTTTTT
5355805 CAGTTTT
65 CA-TTTT
* * *
5355812 TGACTTGTGATGTAATCTCGATGGTTTTCATTTTTTGACT
1 TGACATGTGATGTAATATCGATGGTTTTCATTTTCTGACT
5355852 TACGGTTTAA
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
70 27 0.30
71 32 0.35
72 32 0.35
ACGTcount: A:0.19, C:0.12, G:0.18, T:0.52
Consensus pattern (70 bp):
TGACATGTGATGTAATATCGATGGTTTTCATTTTCTGACTCATGATTTAATCACGGTAGTTTTTC
ATTTT
Found at i:5356179 original size:176 final size:174
Alignment explanation
Indices: 5355989--5356427 Score: 392
Period size: 176 Copynumber: 2.5 Consensus size: 174
5355979 TTTTTCATTG
** *
5355989 ACTCATGATTTAATCCTAGTCATTTTCATTTTTTTGATTCATGATTTAATCCTCG-TTG-TTTTC
1 ACTCATG-TTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCCT-GATCGTTTTTC
** *
5356052 ATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGAC-GCGGTCTAATC-CCTCG
64 ATTTTCTGACTCGTGATTTAATCCTGGTTGTTTCCATT-T-TAAGACTGCGGTCTAATCGCCTCG
* * *
5356115 CATTTTCATTTTATGACTCATGGTTTATTCTCA-G-TAATTTTCATTTTTTA
127 --TTTTCATTTTATGACTCATGGCTTA--ATCAGGATAATATTCATTTTTTA
* * *
5356165 ACTCATAGTTTAAT-CTCGATCATTTTCA-TTTTCTGACCCATGGTTTAATCCTGATCGTTTTTC
1 ACTCAT-GTTTAATCCTAG-TCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTTTTC
* * * * ** * *
5356228 TTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTGGCTCG
64 ATTTTCTGACTCGTGATTTAATCCTGGTTGTTTCCATTTTAAGAC-TGCGGTCTAATC-GCCTCG
* * * *
5356293 TTTTCATTTTCTGGCTCATGGCTTAATCAGGATTATATTCATTTTTTG
127 TTTTCATTTTATGACTCATGGCTTAATCAGGATAATATTCATTTTTTA
* * * * * * * *
5356341 ACTCATGGTTTAATCATAGTCATTTTCA-TTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCA
1 ACTCAT-GTTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTTTTCA
* *
5356405 TTTTTTGACTCGTGGTTTAATCC
65 TTTTCTGACTCGTGATTTAATCC
5356428 CTATCATTTT
Statistics
Matches: 216, Mismatches: 36, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
174 8 0.04
175 27 0.12
176 174 0.81
177 3 0.01
178 4 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (174 bp):
ACTCATGTTTAATCCTAGTCATTTTCATTTTTTTGACCCATGATTTAATCCTGATCGTTTTTCAT
TTTCTGACTCGTGATTTAATCCTGGTTGTTTCCATTTTAAGACTGCGGTCTAATCGCCTCGTTTT
CATTTTATGACTCATGGCTTAATCAGGATAATATTCATTTTTTA
Found at i:5356495 original size:212 final size:210
Alignment explanation
Indices: 5356119--5356690 Score: 573
Period size: 212 Copynumber: 2.7 Consensus size: 210
5356109 CCCTCGCATT
* * * * *
5356119 TTCATTTTATGACTCATGGTTTATTCTCAGTAATTTTCATTTTTTAACTCATAGTTTAATC-TCG
1 TTCATTTTTTGACTCATGGTTTAATCT-AGTCATTTTCATTTTTTGACTCATGGTTTAATCGT-G
* * * * * * *
5356183 ATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTA
64 GTCATTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTTCATTTTTTCACTGGTAGTTTA
*** ** * *
5356248 ATCCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAAT-CTGGCTCGTTTTCATTTTCTGGCTCAT
129 ATCCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCCTGGC-CGTTTTCATTTTCTGACTCAT
5356312 GGCTTAATC-AGGATTATA
193 GGCTTAATCTAGG-TTATA
* *
5356330 TTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCTAATCGTGG
1 TTCATTTTTTGACTCATGGTTTAATC-TAGTCATTTTCATTTTTTGACTCATGGTTTAATCGTGG
* * *
5356395 TCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCATTTTTTCATTGGTAGTTT
65 T-CATTTTCATTTTTTGACTCATGGTTTAAT-CCTGATCATTTTTCATTTTTTCACTGGTAGTTT
* * **
5356459 AATCCCAATCATTTTCATTTTCTGACTTGTGGTTTAATCCTGGCCGTTTTCATTTTCTGACTTGT
128 AATCCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCCTGGCCGTTTTCATTTTCTGACTCAT
* * *
5356524 GGTTTAATCTAGGTTGTT
193 GGCTTAATCTAGGTTATA
* * * * *
5356542 TTGATTTTTTGACTCACGGTTTAATCCCT-GTCCTTTTCATTTTTTGACTCACGGTTTAATCGCG
1 TTCATTTTTTGACTCATGGTTTAAT--CTAGTCATTTTCATTTTTTGACTCATGGTTTAATCGTG
* * * * * * *
5356606 GTCATTTTCATTTTTTTGACTTATGATTTAAT-CTCGATCGTTCTTCACTTTTTGACTCG-AGTT
64 GTCATTTTCA-TTTTTTGACTCATGGTTTAATCCT-GATCATTTTTCATTTTTTCACTGGTAG-T
* * *
5356669 TTAATCACGATCATTTTCATTT
126 TTAATCCCAATCATTTCCATTT
5356691 CTTGACTCGT
Statistics
Matches: 299, Mismatches: 50, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
210 2 0.01
211 63 0.21
212 221 0.74
213 12 0.04
214 1 0.00
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.50
Consensus pattern (210 bp):
TTCATTTTTTGACTCATGGTTTAATCTAGTCATTTTCATTTTTTGACTCATGGTTTAATCGTGGT
CATTTTCATTTTTTGACTCATGGTTTAATCCTGATCATTTTTCATTTTTTCACTGGTAGTTTAAT
CCCAATCATTTCCATTTTCTGACTTGCGGTTTAATCCTGGCCGTTTTCATTTTCTGACTCATGGC
TTAATCTAGGTTATA
Found at i:5356672 original size:72 final size:70
Alignment explanation
Indices: 5356577--5356744 Score: 196
Period size: 72 Copynumber: 2.4 Consensus size: 70
5356567 CCCTGTCCTT
* * * * * *
5356577 TTCATTTTTTGACTCACGGTTTAATCGCGGTCATTTTCATTTTTTTGACTTATGATTTAATCTCG
1 TTCATTTTTTGACTCACGGTTTAATCACGATCATTTTCA-TTTCTTGACTCATGATTTAAACCCG
5356642 ATCGTTC-
65 ATCG--CA
* * *
5356649 TTCACTTTTTGACTCGA-GTTTTAATCACGATCATTTTCATTTCTTGACTCGTGATTTAAACCCG
1 TTCATTTTTTGACTC-ACGGTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAAACCCG
5356713 ATCGCA
65 ATCGCA
*
5356719 TTCATTTTTTGACTCATGGTTTAATC
1 TTCATTTTTTGACTCACGGTTTAATC
5356745 CCAATCTTTT
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
69 2 0.02
70 22 0.27
71 24 0.29
72 33 0.40
73 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (70 bp):
TTCATTTTTTGACTCACGGTTTAATCACGATCATTTTCATTTCTTGACTCATGATTTAAACCCGA
TCGCA
Found at i:5356725 original size:212 final size:212
Alignment explanation
Indices: 5356295--5356744 Score: 487
Period size: 212 Copynumber: 2.1 Consensus size: 212
5356285 CTGGCTCGTT
* * * * * *
5356295 TTCATTTTCTGGCTCATGGCTTAATC-AGGATTATATTCATTTTTTGACTCATGGTTTAATCATA
1 TTCATTTTCTGACTCATGGTTTAATCTAGG-TTGTTTTGATTTTTTGACTCACGGTTTAATCATA
** * * * *
5356359 GTCATTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTA
65 GTCATTTTCATTTTTTGACTCACGGTCTAATCGCGGTCCATTTTCATTTTTTGACTCATGATTTA
* * * * * * *
5356424 ATCCCTATCATTTTTCATTTTTTCATTGGTAGTTTAATCCCAATCATTTTCATTTTCTGACTTGT
130 ATCCCGATCATTCTTCACTTTTTCACTCGTAGTTTAATCACAATCATTTTCATTTTCTGACTCGT
* * * * **
5356489 GGTTTAATCCTGGCCGTT
195 GATTTAAACCCGACCGCA
** *
5356507 TTCATTTTCTGACTTGTGGTTTAATCTAGGTTGTTTTGATTTTTTGACTCACGGTTTAATCCCT-
1 TTCATTTTCTGACTCATGGTTTAATCTAGGTTGTTTTGATTTTTTGACTCACGGTTTAAT-CATA
* * *
5356571 GTCCTTTTCATTTTTTGACTCACGGTTTAATCGCGGT-CATTTTCATTTTTTTGACTTATGATTT
65 GTCATTTTCATTTTTTGACTCACGGTCTAATCGCGGTCCATTTTCA-TTTTTTGACTCATGATTT
* * * *
5356635 AATCTCGATCGTTCTTCACTTTTTGACTCG-AGTTTTAATCACGATCATTTTCA-TTTCTTGACT
129 AATCCCGATCATTCTTCACTTTTTCACTCGTAG-TTTAATCACAATCATTTTCATTTTC-TGACT
*
5356698 CGTGATTTAAACCCGATCGCA
192 CGTGATTTAAACCCGACCGCA
*
5356719 TTCATTTTTTGACTCATGGTTTAATC
1 TTCATTTTCTGACTCATGGTTTAATC
5356745 CCAATCTTTT
Statistics
Matches: 194, Mismatches: 39, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
211 13 0.07
212 176 0.91
213 5 0.03
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (212 bp):
TTCATTTTCTGACTCATGGTTTAATCTAGGTTGTTTTGATTTTTTGACTCACGGTTTAATCATAG
TCATTTTCATTTTTTGACTCACGGTCTAATCGCGGTCCATTTTCATTTTTTGACTCATGATTTAA
TCCCGATCATTCTTCACTTTTTCACTCGTAGTTTAATCACAATCATTTTCATTTTCTGACTCGTG
ATTTAAACCCGACCGCA
Found at i:5356725 original size:247 final size:245
Alignment explanation
Indices: 5356172--5356745 Score: 580
Period size: 247 Copynumber: 2.3 Consensus size: 245
5356162 TTAACTCATA
* * * * * *
5356172 GTTTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGA
1 GTTTAATCACGATCATTTTCATTTT-TGACTCGTGATTTAATCCCGATCG-TTTTCATTTTTTGA
* ** *
5356237 CTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGCGGTTTAATCTGGCTCGTTTTCATTT
64 CTCGTGGTTTAATCCTGGCCGTTTCCATTTTCTGACTTGCGGTTTAATCTGGCTCGTTTTCATTT
* * * * *
5356302 TCTGGCTCATGGCTTAATCAGGATTATATTCATTTTTTGACTCATGGTTTAATCATAGTCATTTT
129 TCTGACTCACGGCTTAATCAGGATCATATTCATTTTTTGACTCACGGTTTAATCACAGTCATTTT
* * * * * *
5356367 CATTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTG
194 CATTTTTTGACTCATGATCTAATCGTGATCCTTCTTCACTTTTTGACTCGAG
* * * * * * * *
5356419 GTTTAATCCCTATCATTTTTCATTTTTTCATTGGT-AGTTTAATCCCAATCATTTTCATTTTCTG
1 GTTTAATCACGATCA-TTTTCA-TTTTTGACTCGTGA-TTTAATCCCGATCGTTTTCATTTTTTG
* * * * *
5356483 ACTTGTGGTTTAATCCTGGCCGTTTTCATTTTCTGACTTGTGGTTTAATCTAGG-TTGTTTTGAT
63 ACTCGTGGTTTAATCCTGGCCGTTTCCATTTTCTGACTTGCGGTTTAATCT-GGCTCGTTTTCAT
* * ** * * * *
5356547 TTTTTGACTCACGGTTTAATCCCTG-TCCTTTTCATTTTTTGACTCACGGTTTAATCGCGGTCAT
127 TTTCTGACTCACGGCTTAAT-CAGGATCATATTCATTTTTTGACTCACGGTTTAATCACAGTCAT
* * *
5356611 TTTCATTTTTTTGACTTATGATTTAATC-TCGATCGTTCTTCACTTTTTGACTCGAG
191 TTTCA-TTTTTTGACTCATGATCTAATCGT-GATCCTTCTTCACTTTTTGACTCGAG
* * **
5356667 TTTTAATCACGATCATTTTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTGAC
1 GTTTAATCACGATCATTTTCATTT-TTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGAC
*
5356732 TCATGGTTTAATCC
65 TCGTGGTTTAATCC
5356746 CAATCTTTTT
Statistics
Matches: 261, Mismatches: 57, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
246 3 0.01
247 178 0.68
248 76 0.29
249 4 0.02
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (245 bp):
GTTTAATCACGATCATTTTCATTTTTGACTCGTGATTTAATCCCGATCGTTTTCATTTTTTGACT
CGTGGTTTAATCCTGGCCGTTTCCATTTTCTGACTTGCGGTTTAATCTGGCTCGTTTTCATTTTC
TGACTCACGGCTTAATCAGGATCATATTCATTTTTTGACTCACGGTTTAATCACAGTCATTTTCA
TTTTTTGACTCATGATCTAATCGTGATCCTTCTTCACTTTTTGACTCGAG
Found at i:5356846 original size:35 final size:35
Alignment explanation
Indices: 5356805--5357012 Score: 118
Period size: 35 Copynumber: 5.9 Consensus size: 35
5356795 TTAATTCCAG
* * * *
5356805 TCATTTTCATTTCCTGACTCACGGTTTAATCCTGT
1 TCATTTTCATTTTCTGACTCATGGTTTAATCCCGA
* * **
5356840 TTATTTTTCTTTTTCTGACTGGTGGTTTAATCCCGA
1 TCA-TTTTCATTTTCTGACTCATGGTTTAATCCCGA
* * **
5356876 TCATTTCCATTTTCAGACTCATGGTTTAAT-CTTA
1 TCATTTTCATTTTCTGACTCATGGTTTAATCCCGA
* * * * ** *
5356910 GTCGTTTCCATTTTCT-AGCTCGTGCTTTAATCTAGG
1 -TCATTTTCATTTTCTGA-CTCATGGTTTAATCCCGA
*
5356946 TCATTTTCTTTTTCTGACTCAAT-GTTTAATCCC-A
1 TCATTTTCATTTTCTGACTC-ATGGTTTAATCCCGA
** * * *
5356980 CTTGTTTTCGTTTTTTGACTCGTGGTTTAATCC
1 -TCATTTTCATTTTCTGACTCATGGTTTAATCC
5357013 AGGTTGTTTT
Statistics
Matches: 128, Mismatches: 37, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
34 4 0.03
35 95 0.74
36 29 0.23
ACGTcount: A:0.16, C:0.21, G:0.13, T:0.49
Consensus pattern (35 bp):
TCATTTTCATTTTCTGACTCATGGTTTAATCCCGA
Found at i:5357020 original size:35 final size:34
Alignment explanation
Indices: 5356928--5357031 Score: 86
Period size: 35 Copynumber: 2.9 Consensus size: 34
5356918 CATTTTCTAG
* * **
5356928 CTCGTGCTTTAATCTAGGTCATTTTCTTTTTCTGA
1 CTCGTGGTTTAATCCAGGTTGTTTTCTTTTT-TGA
* *
5356963 CTCAAT-GTTTAATCCCA-CTTGTTTTCGTTTTTTGA
1 CTC-GTGGTTTAAT-CCAGGTTGTTTTC-TTTTTTGA
5356998 CTCGTGGTTTAATCCAGGTTGTTTTTCATTTTTT
1 CTCGTGGTTTAATCCAGGTTG-TTTTC-TTTTTT
5357032 AACCCGTACT
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
34 4 0.07
35 31 0.57
36 19 0.35
ACGTcount: A:0.14, C:0.18, G:0.14, T:0.53
Consensus pattern (34 bp):
CTCGTGGTTTAATCCAGGTTGTTTTCTTTTTTGA
Found at i:5357204 original size:35 final size:35
Alignment explanation
Indices: 5357141--5357224 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 35
5357131 TCATTTTTTG
**
5357141 ATCGTTTTCATTTTCTAACTTGTAGTTTAATATCA
1 ATCGTTTTCATTTTCTAACTAATAGTTTAATATCA
* * *
5357176 ATCGTTTTCGTTTTCTAACTCAAT-GTTTAATCTCG
1 ATCGTTTTCATTTTCTAACT-AATAGTTTAATATCA
*
5357211 ATCGTTTTCCTTTT
1 ATCGTTTTCATTTT
5357225 TTTGGCTAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 41 0.98
36 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.52
Consensus pattern (35 bp):
ATCGTTTTCATTTTCTAACTAATAGTTTAATATCA
Found at i:5357255 original size:71 final size:71
Alignment explanation
Indices: 5357180--5357454 Score: 174
Period size: 70 Copynumber: 3.9 Consensus size: 71
5357170 ATATCAATCG
* * *
5357180 TTTTCGTTTTCTAACTCAAT-GTTTAATCTCGATCGTTTTCCTTTTTTTGGCTAGTGGTTTAATC
1 TTTTCGTTTTCTAACTCAATGGTTTAATCTCGATCATTTT-CATTTTTTGACTAGTGGTTTAATC
5357244 CCGATCA
65 CCGATCA
* * * * * * *
5357251 TTTTCATTTTTTGACTC-GTGGTTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCT
1 TTTTCGTTTTCTAACTCAATGGTTTAATCTCGATCATTTTCATTTTTTGACTAGTGGTTTAATCC
* **
5357315 CGGTTG
66 CGATCA
* * * * * * * * *
5357321 TTTTGGTTTTCTAACTC-ACGATTTAATTTTGGTC-CTTTCATTTTTTGACTTA-CGGCTTAATT
1 TTTTCGTTTTCTAACTCAATGGTTTAATCTCGATCATTTTCATTTTTTGAC-TAGTGGTTTAA-T
5357383 CCC-ATCA
64 CCCGATCA
* * * * *
5357390 CTTTT--TTTCGCTAACTC-ATGATTTAATCCTCG-TCATTTTCATTTTTTTGATTCGTGATTTA
1 -TTTTCGTTT-TCTAACTCAATGGTTTAAT-CTCGATCATTTTCA-TTTTTTGACTAGTGGTTTA
5357451 ATCC
62 ATCC
5357455 TTGTTTTTTT
Statistics
Matches: 155, Mismatches: 40, Indels: 19
0.72 0.19 0.09
Matches are distributed among these distances:
68 3 0.02
69 39 0.25
70 69 0.45
71 44 0.28
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.51
Consensus pattern (71 bp):
TTTTCGTTTTCTAACTCAATGGTTTAATCTCGATCATTTTCATTTTTTGACTAGTGGTTTAATCC
CGATCA
Found at i:5357272 original size:35 final size:35
Alignment explanation
Indices: 5357200--5357316 Score: 171
Period size: 35 Copynumber: 3.3 Consensus size: 35
5357190 CTAACTCAAT
* * * *
5357200 GTTTAATCTCGATCGTTTTCCTTTTTTTGGCTAGTG
1 GTTTAATCTCGATCATTTT-CATTTTTTGACTCGTG
*
5357236 GTTTAATCCCGATCATTTTCATTTTTTGACTCGTG
1 GTTTAATCTCGATCATTTTCATTTTTTGACTCGTG
*
5357271 GTTTAATCTTGATCATTTTCATTTTTTGACTCGTG
1 GTTTAATCTCGATCATTTTCATTTTTTGACTCGTG
5357306 GTTTAATCTCG
1 GTTTAATCTCG
5357317 GTTGTTTTGG
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
35 56 0.77
36 17 0.23
ACGTcount: A:0.15, C:0.17, G:0.16, T:0.51
Consensus pattern (35 bp):
GTTTAATCTCGATCATTTTCATTTTTTGACTCGTG
Found at i:5357346 original size:70 final size:69
Alignment explanation
Indices: 5357138--5357370 Score: 207
Period size: 70 Copynumber: 3.3 Consensus size: 69
5357128 TTTTCATTTT
* * * * * *
5357138 TTGATCGTTTTCATTTTCTAACTTGTAGTTTAATATCAATCGTTTTCGTTTTCTAACTCAATGTT
1 TTGATCGTTTTCATTTTTTGACTAGTGGTTTAATCTCGATCGTTTTCGTTTTCTAACTC-ATGTT
5357203 TAATC
65 TAATC
* * * * * * * * *
5357208 TCGATCGTTTTCCTTTTTTTGGCTAGTGGTTTAATCCCGATCATTTTCATTTTTTGACTCGTGGT
1 TTGATCGTTTT-CATTTTTTGACTAGTGGTTTAATCTCGATCGTTTTCGTTTTCTAACTCAT-GT
5357273 TTAATC
64 TTAATC
* * * * * *
5357279 TTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTGGTTTTCTAACTCACGATT
1 TTGATCGTTTTCATTTTTTGACTAGTGGTTTAATCTCGATCGTTTTCGTTTTCTAACTCATG-TT
*
5357344 TAATT
65 TAATC
* *
5357349 TTGGTC-CTTTCATTTTTTGACT
1 TTGATCGTTTTCATTTTTTGACT
5357371 TACGGCTTAA
Statistics
Matches: 127, Mismatches: 33, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
69 16 0.13
70 59 0.46
71 52 0.41
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.52
Consensus pattern (69 bp):
TTGATCGTTTTCATTTTTTGACTAGTGGTTTAATCTCGATCGTTTTCGTTTTCTAACTCATGTTT
AATC
Found at i:5357450 original size:36 final size:35
Alignment explanation
Indices: 5357403--5357487 Score: 107
Period size: 36 Copynumber: 2.4 Consensus size: 35
5357393 TTTTTCGCTA
* *
5357403 ACTCATGATTTAATCCTCGTCATTTTCATTTTTTTG
1 ACTCGTGATTTAATCCTCGTCATTTTCA-TTTTCTG
* * **
5357439 ATTCGTGATTTAATCCTTGTTTTTTTCATTTTCTG
1 ACTCGTGATTTAATCCTCGTCATTTTCATTTTCTG
5357474 ACTCGTGATTTAAT
1 ACTCGTGATTTAAT
5357488 TTTGGTTGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 19 0.45
36 23 0.55
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.54
Consensus pattern (35 bp):
ACTCGTGATTTAATCCTCGTCATTTTCATTTTCTG
Found at i:5357487 original size:35 final size:36
Alignment explanation
Indices: 5357201--5357487 Score: 118
Period size: 35 Copynumber: 8.2 Consensus size: 36
5357191 TAACTCAATG
* * * * * *
5357201 TTTAAT-CTCGATCGTTTTCCTTTTTTTGGCTAGTGG
1 TTTAATCCTCG-TCATTTTCATTTTTCTGACTCGTGA
*
5357237 TTTAATCC-CGATCATTTTCATTTTT-TGACTCGTGG
1 TTTAATCCTCG-TCATTTTCATTTTTCTGACTCGTGA
* *
5357272 TTTAAT-CTTGATCATTTTCATTTTT-TGACTCGTGG
1 TTTAATCCTCG-TCATTTTCATTTTTCTGACTCGTGA
** ** * **
5357307 TTTAAT-CTCGGTTGTTTT-GGTTTTCTAACTCACGA
1 TTTAATCCTC-GTCATTTTCATTTTTCTGACTCGTGA
** * *
5357342 TTTAATTTTGGTC-CTTTCATTTTT-TGACTTACG-G-
1 TTTAATCCTCGTCATTTTCATTTTTCTGAC-T-CGTGA
* * ** * *
5357376 CTTAATTCC-CATCACTTTT--TTTCGCTAACTCATGA
1 TTTAA-TCCTCGTCA-TTTTCATTTTTCTGACTCGTGA
* *
5357411 TTTAATCCTCGTCATTTTCATTTTTTTGATTCGTGA
1 TTTAATCCTCGTCATTTTCATTTTTCTGACTCGTGA
* **
5357447 TTTAATCCTTGTTTTTTTCA-TTTTCTGACTCGTGA
1 TTTAATCCTCGTCATTTTCATTTTTCTGACTCGTGA
5357482 TTTAAT
1 TTTAAT
5357488 TTTGGTTGTT
Statistics
Matches: 189, Mismatches: 45, Indels: 35
0.70 0.17 0.13
Matches are distributed among these distances:
33 1 0.01
34 29 0.15
35 104 0.55
36 54 0.29
37 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.13, T:0.52
Consensus pattern (36 bp):
TTTAATCCTCGTCATTTTCATTTTTCTGACTCGTGA
Found at i:5358835 original size:35 final size:35
Alignment explanation
Indices: 5358777--5359011 Score: 140
Period size: 35 Copynumber: 6.7 Consensus size: 35
5358767 TTTATCGTTC
* * * *
5358777 TCATTTTCTAACTCGTAGCTTAATTGCAGTCATTT
1 TCATTTTCTGACTCATGGTTTAATTGCAGTCATTT
*
5358812 TCATTTCCTGACTCATGGTTTAATCCTGC--TCATTTT
1 TCATTTTCTGACTCATGGTTTAAT--TGCAGTCA-TTT
* * **
5358848 TCTTTTTCTGACTGATGGTTTAATCCCAGTCATTT
1 TCATTTTCTGACTCATGGTTTAATTGCAGTCATTT
* * * *
5358883 CCATTTTCTGGCTCATGGTTTAATCT-TAGTCGTTT
1 TCATTTTCTGACTCATGGTTTAAT-TGCAGTCATTT
* * * * *
5358918 CCATTTTTTGGCTCGTGCTTTAA-T-CTAGGTCATTT
1 TCATTTTCTGACTCATGGTTTAATTGC-A-GTCATTT
* ** * **
5358953 TCTTTTTCTGACTCAAT-GTTTAATCCCACTTGTTT
1 TCATTTTCTGACTC-ATGGTTTAATTGCAGTCATTT
*
5358988 TCATTTTCTGACTCGTGGTTTAAT
1 TCATTTTCTGACTCATGGTTTAAT
5359012 CTAGGTTGTT
Statistics
Matches: 154, Mismatches: 34, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
33 1 0.01
34 3 0.02
35 117 0.76
36 29 0.19
37 4 0.03
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.49
Consensus pattern (35 bp):
TCATTTTCTGACTCATGGTTTAATTGCAGTCATTT
Found at i:5359021 original size:35 final size:35
Alignment explanation
Indices: 5358804--5360923 Score: 361
Period size: 35 Copynumber: 61.0 Consensus size: 35
5358794 GCTTAATTGC
* *
5358804 AGTCATTTTCATTTCCTGACTCATGGTTTAATCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5358839 -GCTCATTTTTCTTTTTCTGACTGATGGTTTAATCCC
1 AG-TC-GTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5358875 AGTCATTTCCATTTTCTGGCTCATGGTTTAATCTT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * *
5358910 AGTCGTTTCCATTTTTTGGCTCGTGCTTTAAT-CT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * *
5358944 AGGTCATTTTCTTTTTCTGACTCAAT-GTTTAATCCC
1 A-GTCGTTTTCATTTTCTGACTC-ATGGTTTAATCCT
* * *
5358980 ACTTGTTTTCATTTTCTGACTCGTGGTTTAAT-CT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * **
5359014 AGGTTGTTTTTCATTTTTTAAGTCGTACTTTAATCCT
1 A-GTCG-TTTTCATTTTCTGACTCATGGTTTAATCCT
* ** * * *
5359051 AATCACTTTCA-TTTCTTGACTCATGATTCAA-ACT
1 AGTCGTTTTCATTTTC-TGACTCATGGTTTAATCCT
* * ** * * *
5359085 GGTAGCATTCATTTTCTAACTCGTGGTTTAGTCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5359120 -GATCATTTT--TTTT-T---TCAT-TTTTCGATCAT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTT-AATCCT
** * * ** * **
5359149 TTTCATTTT--TTGACTTGTGGTTTAAT-G-CCAATCCCT
1 AGTCGTTTTCATT---TTCT-GACTCATGGTTTAAT-CCT
* *
5359185 A-TCGTTCTCGTTTTCTGACTCAAT-GTTTAAT-CT
1 AGTCGTTTTCATTTTCTGACTC-ATGGTTTAATCCT
* *
5359218 CAGTCATTTTCCTTTTTCT-AGCT-AGTGGTTTAAT-CT
1 -AGTCGTTTT-CATTTTCTGA-CTCA-TGGTTTAATCCT
* * * *
5359254 CGGTCATTTTCATTTTCTAACTCGTGGTTTAATCCTT
1 -AGTCGTTTTCATTTTCTGACTCATGGTTTAATCC-T
* * *
5359291 A-TTGTTTTCATTTTTTGACT-AGTGATTTAATCCT
1 AGTCGTTTTCATTTTCTGACTCA-TGGTTTAATCCT
* * * *
5359325 AGTCATTTT-TTATTTCTGACTCGTGATTTAAT-CT
1 AGTCGTTTTCAT-TTTCTGACTCATGGTTTAATCCT
* *
5359359 CAGTCGTTGTCA-TTTCTTGACTCATGATTTAAT-CT
1 -AGTCGTTTTCATTTTC-TGACTCATGGTTTAATCCT
* * * * * * *
5359394 CGATTGTTTTCATTTTTTAACTCACGATTTAAACC-
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* ** * * *
5359429 CGATTATATTCATTTTTTGACTCGTGGTTTAATCCT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
*
5359465 AGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5359499 CGGTCCTTTTCATTTTCTGACTCGTGATTTAAT-CT
1 -AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * * * *
5359534 CGATCTTTTTTATTTTCTAACTCGTAGTTTAATACG
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * *
5359570 GGTCATTTTCATTTTTTGACTCATAGTTTAATCCC
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5359605 GGTCATTTTCATTTTTTAACTCATGATTTAAT-TT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5359639 CGATCATTTTTCGTTCTCTGA--CATGTGATTTAGT-TT
1 AG-TC-GTTTTCATTTTCTGACTCATG-G-TTTAATCCT
* * * * *
5359675 CGGTGGTTTTGATTTTCTGACTCATGATTT-ATTCT
1 -AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * *
5359710 CAGTAGGTTTCGATTTT-TGA--CATGTGATTTAAT-AT
1 -AGTCGTTTTC-ATTTTCTGACTCATG-G-TTTAATCCT
* * *
5359745 CGATCATTTTCATTTCTCTGACTCATGATTTAA-CGAC-
1 AG-TCGTTTTCATTT-TCTGACTCATGGTTTAATC--CT
* * ** *
5359782 GGTTGTTTTTCATTTTCTGACTTGTGATTTAAT-CT
1 AGTCG-TTTTCATTTTCTGACTCATGGTTTAATCCT
* * *
5359817 CGATCGTTTTCATTTTTTGACTCACGGTTTAAT-CT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5359852 TGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * ** * **
5359887 CGGTTGTTTTTGTTTTCTGACTCGTGGTTTAATTTT
1 -AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * *
5359923 GGTCATTTTCATTTTTTGACTTACGGTTTAATTCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAA-TCCT
* ** * * *
5359959 A-TCGCTTTT-GTTCCCTAACTCATGATTTAATTCT
1 AGTCG-TTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5359993 GGTCATTTTCATTTTTTTGATTCGTGATTTAATCCTT
1 AGTCGTTTTCA-TTTTCTGACTCATGGTTTAATCC-T
* * * ** **
5360030 A-TTGTTTTCGTTTTCTGACTCGTAATTTAATTTT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5360064 GGTTGTTATCATTATCTAAGACGC--GGTCTAATCCCT
1 AGTCGTTTTCATTTTCT--GACTCATGGTTTAAT-CCT
* * * * *
5360100 CGT-ATTTTCATTTTATGACTCGTGGTTT-ATTCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* *
5360133 CAGTCATTTTCATTTTCTGACTCATAGTTTAAT-CT
1 -AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * **
5360168 CGATCATTTTCATGTTCTAACCCAACGTTTAATCCT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * ** *
5360204 -GATCGTTTTTCTTTTTTTGACTGGTGGTTTAAT-CA
1 AG-TCG-TTTTCATTTTCTGACTCATGGTTTAATCCT
** * *
5360239 AGATTATTTTCATTTTTTGACTCATGGTTTAATCAT
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5360275 AGTCATTTTCTTTTTTTGACTCGTGG-----TCC-
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* *
5360304 --T--TTTTCATTTTTTGACTCGTGGTTTAATCCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAAT-CCT
* * * ** * *
5360336 A-TCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCC
1 AGTC-GTTTTCATTTTCTGACT-CATGGTTTAATCCT
* *
5360371 AATCGTTTTCATTTTCTGACTTATGGTTTAATCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* ** *
5360406 GGTCGTTTTCATTTTCTGACTTGTAGTTTAAT-CT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * **
5360440 AGGTTGTTTTTATTTTTTGACTCGCGGTTTAATCCT
1 A-GTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * ** * * * * *
5360476 TGTCATTTTTGTCTTCAGATTCATAGTTTAATCGCG
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATC-CT
* * ***
5360512 A-TCATTTTCATTTTTTTGGACTTGCGGTTTAAT-CT
1 AGTCGTTTTCA-TTTTCT-GACTCATGGTTTAATCCT
* * * *
5360547 CGATCGTTCTTCATTTTTTGACTCGTGTTTTAAT-CT
1 AG-TCGTT-TTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5360583 CGATCGTTTTCA-TTTCTTGACTCACGATTTAAACC-
1 AG-TCGTTTTCATTTTC-TGACTCATGGTTTAATCCT
* ** * *
5360618 CGATCGCATTCATTTTTTGACTCATGGTTTAATCCC
1 AG-TCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * *
5360654 AATCATTTTTCATTTTC--A-T--T--TTT--T-TT
1 AGTC-GTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5360680 A-TCGTTCTCGTTTTCTAACTCGTAGCTTAATTCC-
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAA-TCCT
* *
5360714 AGTCATTTTCATTTCCTGACTCATGGTTTAATCCT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * ** * *
5360749 ACTCATTTTTCTTTTTCTGACTGGTAGTTTAATCCC
1 AGTC-GTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * *
5360785 AGTCATTTCCATTTTCTGATTGATGGTTTAATCTT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * * * *
5360820 AGTCGTTTCCTTTTTTTGGCTCATGCTTTAAT-GT
1 AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
* * * *
5360854 AGGTCATTTTCTTTTTCTGACTGAAT-GTTTAATCCC
1 A-GTCGTTTTCATTTTCTGACT-CATGGTTTAATCCT
* * * *
5360890 A-TCTTTTTTCGTTTTTTGACTCGTGGTTTAATCC
1 AGTC-GTTTTCATTTTCTGACTCATGGTTTAATCC
5360924 AGGTTATTTT
Statistics
Matches: 1525, Mismatches: 415, Indels: 290
0.68 0.19 0.13
Matches are distributed among these distances:
24 9 0.01
25 22 0.01
26 2 0.00
27 3 0.00
28 3 0.00
29 19 0.01
30 3 0.00
31 5 0.00
32 3 0.00
33 21 0.01
34 90 0.06
35 989 0.65
36 298 0.20
37 50 0.03
38 8 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (35 bp):
AGTCGTTTTCATTTTCTGACTCATGGTTTAATCCT
Found at i:5359591 original size:70 final size:70
Alignment explanation
Indices: 5359185--5362965 Score: 586
Period size: 70 Copynumber: 54.5 Consensus size: 70
5359175 GCCAATCCCT
* * * * * *
5359185 ATCGTTCTCGTTTTCTGACTCAATG-TTTAA-TCTCAGTCATTTTCCTTTTTCT-AGCTAGTGGT
1 ATCGTTTTCATTTTCTGACTC-ATGATTTAATTC-CGGTCATTTTCATTTTT-TGA-CTCGTGAT
5359247 TTAATCTCG
62 TTAATCTCG
* * * * * ** ** *
5359256 GTCATTTTCATTTTCTAACTCGTGGTTTAA-TCCTTATTGTTTTCATTTTTTGACTAGTGATTTA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATTTA
*
5359320 ATC-CT
65 ATCTCG
* * * * * * * *
5359325 AGTCATTTT-TTATTTCTGACTCGTGATTTAA-TCTCAGTCGTTGTCATTTCTTGACTCATGATT
1 A-TCGTTTTCAT-TTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATT
5359388 TAATCTCG
63 TAATCTCG
* * * * ** * * * *
5359396 ATTGTTTTCATTTTTTAACTCACGATTTAAACCCGATTATATTCATTTTTTGACTCGTGGTTTAA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTAA
*
5359461 TC-CT
66 TCTCG
* * * *
5359465 AGTCGTTTTCATTTTTTGACTCATGGTTTAA-TCTCGGTCCTTTTCATTTTCTGACTCGTGATTT
1 A-TCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTT
5359529 AATCTCG
64 AATCTCG
* * * * * * *
5359536 ATCTTTTTTATTTTCTAACTCGT-AGTTTAATACGGGTCATTTTCATTTTTTGACTCAT-AGTTT
1 ATCGTTTTCATTTTCTGACTCATGA-TTTAATTCCGGTCATTTTCATTTTTTGACTCGTGA-TTT
*
5359599 AATCCCG
64 AATCTCG
* * * * * * * * *
5359606 GTCATTTTCATTTTTTAACTCATGATTTAATTTCGATCATTTTTCGTTCTCTGACAT-GTGATTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCA-TTTTCATTTTTTGAC-TCGTGATTT
* *
5359670 AGTTTCG
64 AATCTCG
* * * * *
5359677 GTGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAGT-AGGTTTCGA-TTTTTGACAT-GTGAT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCA-TTTTC-ATTTTTTGAC-TCGTGAT
*
5359738 TTAATATCG
62 TTAATCTCG
* *** ** * *
5359747 ATCATTTTCATTTCTCTGACTCATGATTTAACGACGGTTGTTTTTCATTTTCTGACTTGTGATTT
1 ATCGTTTTCATTT-TCTGACTCATGATTTAATTCCGG-TCATTTTCATTTTTTGACTCGTGATTT
5359812 AATCTCG
64 AATCTCG
* * * * * *
5359819 ATCGTTTTCATTTTTTGACTCACGGTTTAA-TCTTGATCATTTTCATTTTTTGACTCGTGGTTTA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTTA
5359883 ATCTCG
65 ATCTCG
* * ** * * **
5359889 GTTGTTTTTGTTTTCTGACTCGTGGTTTAATTTTGGTCATTTTCATTTTTTGACTTACG-G-TTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGAC-T-CGTGATTT
*
5359952 AAT-TCCT
64 AATCT-CG
* ** * * *
5359959 ATCGCTTTT-GTTCCCTAACTCATGATTTAATTCTGGTCATTTTCATTTTTTTGATTCGTGATTT
1 ATCG-TTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCA-TTTTTTGACTCGTGATTT
*
5360023 AATC-CTT
64 AATCTC-G
* * * * ** ** * ** * *
5360030 ATTGTTTTCGTTTTCTGACTCGTAATTTAATTTTGGTTGTTATCATTATCTAAGACGCG-G-TCT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATT-T-TTTGACTCGTGATTT
5360093 AATCCCTCG
64 AAT--CTCG
* * * * * * *
5360102 -T-ATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCATTTTCATTTTCTGACTCAT-AGTTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGA-TTT
5360163 AATCTCG
64 AATCTCG
* * * * * * * * * *
5360170 ATCATTTTCATGTTCTAACCCAACG-TTTAA-TCCTGATCGTTTTTCTTTTTTTGACTGGTGGTT
1 ATCGTTTTCATTTTCTGACTC-ATGATTTAATTCC-GGTC-ATTTTCATTTTTTGACTCGTGATT
**
5360233 TAATCAAG
63 TAATCTCG
** * * ** *
5360241 ATTATTTTCATTTTTTGACTCATGGTTTAA-TCATAGTCATTTTCTTTTTTTGACTCGTG-----
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTTA
*
5360300 GTC-C-
65 ATCTCG
* * * * ** * *
5360304 -T--TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-T-GGGTAGTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCA-TTTTCATTTTTTGACTCGTG-A-TT
* *
5360364 TAATCCCA
63 TAATCTCG
* * * * *
5360372 ATCGTTTTCATTTTCTGACTTATGGTTTAA-TCCTGGTCGTTTTCATTTTCTGACTTGT-AGTTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGA-TTT
*
5360435 AATCTAG
64 AATCTCG
* * * * ** * * ** * ** * *
5360442 GTTGTTTTTATTTTTTGACTCGCGGTTTAA-TCCTTGTCATTTTTGTCTTCAGATTCAT-AGTTT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGA-TTT
*
5360505 AATCGCG
64 AATCTCG
* * *** * * * *
5360512 ATCATTTTCATTTTTTTGGACTTGCGGTTTAA-TCTCGATCGTTCTTCATTTTTTGACTCGTGTT
1 ATCGTTTTCA-TTTTCT-GACTCATGATTTAATTC-CGGTCATT-TTCATTTTTTGACTCGTGAT
5360576 TTAATCTCG
62 TTAATCTCG
* ** * *** * *
5360585 ATCGTTTTCA-TTTCTTGACTCACGATTTAAACCCGATCGCATTCATTTTTTGACTCATGGTTTA
1 ATCGTTTTCATTTTC-TGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTA
* *
5360649 ATCCCA
65 ATCTCG
* ** * * * * * *
5360655 ATCATTTTTCATTTTC--A-T--T--TTT--TT--TATCGTTCTCGTTTTCTAACTCGT-AGCTT
1 ATC-GTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGA-TTT
*
5360708 AAT-TCC
64 AATCTCG
* * * ** *
5360714 AGTCATTTTCATTTCCTGACTCATGGTTTAA-TCCTACTCATTTTTC-TTTTTCTGACTGGT-AG
1 A-TCGTTTTCATTTTCTGACTCATGATTTAATTCC-GGTCA-TTTTCATTTTT-TGACTCGTGA-
*
5360776 TTTAATC-CC
61 TTTAATCTCG
* * * * * ** * * * * * *
5360785 AGTCATTTCCATTTTCTGATTGATGGTTTAA-TCTTAGTCGTTTCCTTTTTTTGGCTCATGCTTT
1 A-TCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTT
* *
5360849 AATGTAG
64 AATCTCG
* * * * ** * * *
5360856 GTCATTTTCTTTTTCTGACTGAATG-TTTAA-TCCCATCTTTTTTCGTTTTTTGACTCGTGGTTT
1 ATCGTTTTCATTTTCTGACT-CATGATTTAATTCCGGTC-ATTTTCATTTTTTGACTCGTGATTT
5360919 AATC-CAGG
64 AATCTC--G
* ** * * * * * * * *
5360927 TTATTTTTCATTTTTTAACTCGT-ACTTTAATTCCAGTCATTTTCATTTCTTGAGTCATGATTCA
1 ATCGTTTTCATTTTCTGACTCATGA-TTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTA
*
5360991 AACT-G
65 ATCTCG
* * * * * * *
5360996 GTCGTATTCATTTTCT-ACCTCGTGGTTTAGTCCCGATCA--TT--TTTTTT---TC---ATTT-
1 ATCGTTTTCATTTTCTGA-CTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTA
5361049 -T-TCG
65 ATCTCG
* * * * ** * * * *
5361053 ATCATTTTCATTTTCTGACTCGTGGTTTAATCCCAATCCCAATTCTTTTCGTTTTCTGACACAAT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGT--C-A---TTTTCATTTTTTGACTC-GT
5361118 G-TTTAATCTCG
59 GATTTAATCTCG
* * * * *
5361129 ATCATTTTCCTTTTTCT-AGCT-A-GTAGTTTAA-TCTCGATCATTTTTATTTTTTGACTCGTGG
1 ATCGTTTT-CATTTTCTGA-CTCATG-A-TTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGA
*
5361190 TTTAATC-CTT
61 TTTAATCTC-G
* *
5361200 ATCATTTTCACTTTT-TGACT-AGTGATTTAA-TCCTGGTCATTTT-TTATTTTTGACTCGTGAT
1 ATCGTTTTCA-TTTTCTGACTCA-TGATTTAATTCC-GGTCATTTTCAT-TTTTTGACTCGTGAT
*
5361261 TTAATCT-T
62 TTAATCTCG
* * * * ** * *
5361269 AGTCGTTGTCA-TTTCTTGACTCAAGATTTAATCCCGATTGTTTTCATTTCTTAACTCGTGATTT
1 A-TCGTTTTCATTTTC-TGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTT
*
5361333 AAAC-CTG
64 AATCTC-G
* * * * * *
5361340 ATTGTATTCAGTTTT-TGACTCGA-GGTTTAA-TCCTGGCCGTTTTCATTTTTTGACTCATGATT
1 ATCGTTTTCA-TTTTCTGACTC-ATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATT
*
5361402 TAATTTCG
63 TAATCTCG
* * * * * * * * *
5361410 GTCATTTTCATTTTCTTACTC--GCAGTTTAA-TCTTGGTCTTTTTTA-TTTCTAACTCGTGAGT
1 ATCGTTTTCATTTTCTGACTCATG-A-TTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATT
* *
5361471 TAATTTTG
63 TAATCTCG
* * ** * ** * * *
5361479 ATCGTTTTTCTTTTTTTGACTGGTGGTTTAA-TCCTGGTTGTTTCCATTTTTTGACTTGTGGTTT
1 ATCG-TTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATTT
*
5361543 AATCTGG
64 AATCTCG
* * ** * * * * *
5361550 CTCGTTTTCATTTTTTGACTCATGGCTTAA-TCAAGATTATTTTCATTTTTTGACTCATGGTTTA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTTA
*
5361614 ATCTAG
65 ATCTCG
* * * * *
5361620 -TCATTTTTATTTT-TAACTCATG------GTCC--T--TTTTCATTTTTTGACTCGTGGTTTAA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTAA
* *
5361673 TCCCT
66 TCTCG
* * ** ** ** ** ** * *
5361678 ATCATTTT--TTTTTTGA-T-GGGTAGTTTAAACCCAATCATTTTTGTTTCCTGACTCATGGTTT
1 ATCGTTTTCATTTTCTGACTCATG-A-TTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTT
5361739 AATC-CTG
64 AATCTC-G
* * * ** * * * * * * *
5361746 CTCATTTTTCTTTTTCTGACTGGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTA
1 ATC-GTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTA
**
5361811 AT-TTT
65 ATCTCG
* * * * * * *
5361816 AGTCATTTCCATTTTCTGGCTCGTGCTTTAA-TCTAGGTCATTTTC-TTTTTCTGACTCAATG-T
1 A-TCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTT-TGACTC-GTGAT
*
5361878 TTAATC-CC
62 TTAATCTCG
* * * * ** *
5361886 ACTTGTTTTTC-TTTTTTGACTCGTGGTTTAA-TCCAGGTTGTTTTTCATTTTTTAACTCGT-AC
1 A-TCG-TTTTCATTTTCTGACTCATGATTTAATTCC-GG-TCATTTTCATTTTTTGACTCGTGA-
*
5361948 TTTAATC-CC
61 TTTAATCTCG
* * * * *** * * *
5361957 AGTCATTTTCA-TTTCTTGACTCATGATTCAA-ACTGGTCGCATTCATTTTCTAACTCGTGGTTT
1 A-TCGTTTTCATTTTC-TGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTT
* *
5362020 AGTCCCG
64 AATCTCG
* * * * * * * * *
5362027 ATC-ATTT--TTTT-T---TCAT-TTTTCGA-T-CGTTTTCATTTTC-TGACTCTTG-GT-TTAA
1 ATCGTTTTCATTTTCTGACTCATGATTT-AATTCCG--GTCATTTTCAT--TTTTTGACTCGTGA
** * *
5362079 TCCCAATCCCA
61 T-TTAATCTCG
* * * * * *
5362090 ATCGTTTTCGTTTTCTGACTCAATG-TTTAA-TCTCGATCGTTTTCCTTTTTCT-AGCTAGTGGT
1 ATCGTTTTCATTTTCTGACTC-ATGATTTAATTC-CGGTCATTTTCATTTTT-TGA-CTCGTGAT
5362152 TTAATCTCG
62 TTAATCTCG
* ** * ** * *
5362161 ATCATTTTCATTTTCTGACTTGTGGTTTAA-TCCTTATCGTTTTCATTTTTTGACTAGTGATTTA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATTTA
5362225 ATC-CTG
65 ATCTC-G
* * * * * * * * * *
5362231 GTCATTTTTTATTTT-TGACTCGTGATTTAA-TCTCAGTCGTTGTCATTTCTTGGCTCATGATTT
1 ATC-GTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTT
*
5362294 AATCCCG
64 AATCTCG
*** * * * ** * *
5362301 ATTAATTTCA-TTTCTTAACTCATGATTTAA-ACCTGATTGTATTCATTTTTTGACTCGTGGTTT
1 ATCGTTTTCATTTTC-TGACTCATGATTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATTT
5362364 AATC-CTG
64 AATCTC-G
* * * * * * * *
5362371 GTCATTTTTATTTTTTGACTCATGGTTTAA-TCTCGGTCATTTTCATTTTCTGACTCGCGGTTTA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCATTTTCATTTTTTGACTCGTGATTTA
5362435 ATCTCG
65 ATCTCG
* * * * * * **
5362441 ATC-TTTTTATTTTTTAACTCGT-AGTTTAATACGGGTCATTTTCATTTTTTGACTC-ACAGTTT
1 ATCGTTTTCATTTTCTGACTCATGA-TTTAATTCCGGTCATTTTCATTTTTTGACTCGTGA-TTT
*
5362503 AATCCCG
64 AATCTCG
* * * * ** * * *
5362510 GTCATTTTCATTTTTTAACTTGTGATTCAATTTCGATCATTTT--TTGTTCTCTGACAT-GTGAT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATT-TT-T-TGAC-TCGTGAT
* *
5362572 TTAGTTTCG
62 TTAATCTCG
* * * ** *
5362581 GTGGTTTTGATTTTCTGACTCATGATTT-ATTCTTAGT-AGTTTTCAATTTTTGACAT-GTGATT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTC-CGGTCA-TTTTCATTTTTTGAC-TCGTGATT
*
5362643 TAATATCG
63 TAATCTCG
* * *** ** * *
5362651 ATCATTTTCATTTCTCTAACTCATGATTTAACGACGGTTGTTTTTCATTTTCTGACTTGTGATTT
1 ATCGTTTTCATTT-TCTGACTCATGATTTAATTCCGG-TCATTTTCATTTTTTGACTCGTGATTT
5362716 AATCTCG
64 AATCTCG
* * * * *
5362723 ATCGTTTTCATTTTTTGACTCA-CAGTTTAA-TCCTGATCATTTTCATTTTTTAACTCGTGGTTT
1 ATCGTTTTCATTTTCTGACTCATGA-TTTAATTCC-GGTCATTTTCATTTTTTGACTCGTGATTT
5362786 AATCTCG
64 AATCTCG
* * ** * * * ** ***
5362793 GTTGTTTTTGTTTTTTGACTCGTGGTTTAATTTTGGTCATTTTCATTTTTTGACTTACGATTTAA
1 ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTAA
*
5362858 T-TCCC
66 TCT-CG
* * * * * *
5362863 ATCGCTTTT-GTTTCCTGACTCGTGATTTAA-TCCTAGTCACTTTCATTTTTCTGATTCGTGATT
1 ATCG-TTTTCATTTTCTGACTCATGATTTAATTCC-GGTCATTTTCATTTTT-TGACTCGTGATT
*
5362926 TAATCCTTG
63 TAAT-CTCG
*
5362935 -TTGTTTTCATTTTCTGACTCATGATTTAATT
1 ATCGTTTTCATTTTCTGACTCATGATTTAATT
5362966 TTGGTTGTTT
Statistics
Matches: 2719, Mismatches: 713, Indels: 555
0.68 0.18 0.14
Matches are distributed among these distances:
56 2 0.00
57 36 0.01
58 30 0.01
59 25 0.01
60 54 0.02
61 19 0.01
62 12 0.00
63 16 0.01
64 11 0.00
65 10 0.00
66 10 0.00
67 14 0.01
68 56 0.02
69 189 0.07
70 1320 0.49
71 705 0.26
72 139 0.05
73 37 0.01
74 1 0.00
75 3 0.00
76 13 0.00
77 17 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (70 bp):
ATCGTTTTCATTTTCTGACTCATGATTTAATTCCGGTCATTTTCATTTTTTGACTCGTGATTTAA
TCTCG
Found at i:5359949 original size:105 final size:104
Alignment explanation
Indices: 5359210--5359954 Score: 470
Period size: 105 Copynumber: 7.1 Consensus size: 104
5359200 TGACTCAATG
* * ** * *
5359210 TTTAATCTC-AGTCATTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCATTTTCATTTTCTA
1 TTTAATCTCGA-TCATTTT-CATTTTCTGA-CTCGTGGTTTAATC-CGGTTGTTTTTATTTTCTG
* ** ** *
5359273 ACTCGTGGTTTAATC-CTTATTGTTTTCATTTTTTGACT-AGTGA
62 ACTCATGGTTTAATCTC-GGTCATTTTCATTTTTTGACTCA-CGA
* * * * * * *
5359316 TTTAATC-CTAGTCATTTT-TTATTTCTGACTCGTGATTTAATCTCAGTCGTTGTCA-TTTCTTG
1 TTTAATCTCGA-TCATTTTCAT-TTTCTGACTCGTGGTTTAATC-CGGTTGTTTTTATTTTC-TG
* * ** *
5359378 ACTCATGATTTAATCTCGATTGTTTTCATTTTTTAACTCACGA
62 ACTCATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
* * * * * * * * *
5359421 TTTAAACCCGATTATATTCATTTTTTGACTCGTGGTTTAATCCTAGTCGTTTTCATTTTTTGACT
1 TTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCC-GGTTGTTTTTATTTTCTGACT
* * **
5359486 CATGGTTTAATCTCGGTCCTTTTCATTTTCTGACTCGTGA
65 CATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
* * * * * ** * *
5359526 TTTAATCTCGATCTTTTTTATTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACT
1 TTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAAT-CCGGTTGTTTTTATTTTCTGACT
* * * *
5359591 CATAGTTTAATCCCGGTCATTTTCATTTTTTAACTCATGA
65 CATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
* * * * * * * *
5359631 TTTAATTTCGATCATTTTTCGTTCTCTGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTCTGA
1 TTTAATCTCGATCA-TTTTCATTTTCTGAC-TCGTGGTTTA-ATCCGGTTGTTTTTATTTTCTGA
* * * * **
5359695 CTCATGATTTATTCTCAGT-AGGTTTCGA-TTTTTGACAT-GTGA
63 CTCATGGTTTAATCTCGGTCA-TTTTC-ATTTTTTGAC-TCACGA
* * *
5359737 TTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAA-CGACGGTTGTTTTTCATTTTCTG
1 TTTAATCTCGATCATTTTCATTT-TCTGACTCGTGGTTTAATC--CGGTTGTTTTT-ATTTTCTG
** * * * *
5359801 ACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGG
62 ACTCATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
* * *
5359844 TTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGACT
1 TTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATC-CGGTTGTTTTTATTTTCTGACT
* * * * *
5359909 CGTGGTTTAATTTTGGTCATTTTCATTTTTTGACTTACGG
65 CATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
5359949 TTTAAT
1 TTTAAT
5359955 TCCTATCGCT
Statistics
Matches: 512, Mismatches: 101, Indels: 53
0.77 0.15 0.08
Matches are distributed among these distances:
104 7 0.01
105 295 0.58
106 148 0.29
107 62 0.12
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (104 bp):
TTTAATCTCGATCATTTTCATTTTCTGACTCGTGGTTTAATCCGGTTGTTTTTATTTTCTGACTC
ATGGTTTAATCTCGGTCATTTTCATTTTTTGACTCACGA
Found at i:5360835 original size:71 final size:71
Alignment explanation
Indices: 5360684--5360834 Score: 178
Period size: 71 Copynumber: 2.1 Consensus size: 71
5360674 TTTTTTATCG
* * *
5360684 TTCTCGTTTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTCCTGACTCATGGTTTAATCCT
1 TTCTCTTTTTCTAACTCGTAGCTTAATCCCAGTCATTTCCATTTCCTGACTCATGGTTTAATCCT
5360749 ACTCAT
66 ACTCAT
* * * * * * * *
5360755 TTTTCTTTTTCTGACTGGTAGTTTAATCCCAGTCATTTCCATTTTCTGATTGATGGTTTAATCTT
1 TTCTCTTTTTCTAACTCGTAGCTTAATCCCAGTCATTTCCATTTCCTGACTCATGGTTTAATCCT
* *
5360820 AGTCGT
66 ACTCAT
5360826 TTC-CTTTTT
1 TTCTCTTTTT
5360835 TTGGCTCATG
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
70 6 0.09
71 60 0.91
ACGTcount: A:0.17, C:0.21, G:0.12, T:0.50
Consensus pattern (71 bp):
TTCTCTTTTTCTAACTCGTAGCTTAATCCCAGTCATTTCCATTTCCTGACTCATGGTTTAATCCT
ACTCAT
Found at i:5360956 original size:36 final size:36
Alignment explanation
Indices: 5360881--5360974 Score: 95
Period size: 36 Copynumber: 2.7 Consensus size: 36
5360871 TGACTGAATG
* * * * **
5360881 TTTAATCCCA-TCTTTTTTCGTTTTTTGACTCGTGG
1 TTTAATTCCAGTCATTTTTCATTTTTTAACTCGTAC
*
5360916 TTTAA-TCCAGGTTATTTTTCATTTTTTAACTCGTAC
1 TTTAATTCCA-GTCATTTTTCATTTTTTAACTCGTAC
5360952 TTTAATTCCAGTCA-TTTTCATTT
1 TTTAATTCCAGTCATTTTTCATTT
5360975 CTTGAGTCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
34 3 0.06
35 14 0.29
36 27 0.56
37 4 0.08
ACGTcount: A:0.18, C:0.18, G:0.10, T:0.54
Consensus pattern (36 bp):
TTTAATTCCAGTCATTTTTCATTTTTTAACTCGTAC
Found at i:5361639 original size:33 final size:35
Alignment explanation
Indices: 5361118--5364732 Score: 513
Period size: 35 Copynumber: 104.1 Consensus size: 35
5361108 CTGACACAAT
* * *
5361118 GTTTAATCTCGATCATTTTCCTTTTTCT-AGCT-AGTA
1 GTTTAATCTAGATCATTTTCATTTTT-TGA-CTCA-TG
* * *
5361154 GTTTAATCTCGATCATTTTTATTTTTTGACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5361189 GTTTAATCCT-TATCATTTTCACTTTTTGACT-AGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCA-TG
* * * *
5361224 ATTTAATCCT-GGTCATTTT-TTATTTTTGACTCGTG
1 GTTTAAT-CTAGATCATTTTCAT-TTTTTGACTCATG
* * * * *
5361259 ATTTAATCTTAG-TCGTTGTCATTTCTTGACTCAAG
1 GTTTAATC-TAGATCATTTTCATTTTTTGACTCATG
* ** ** * * *
5361294 ATTTAATCCCGATTGTTTTCATTTCTTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * ** * *
5361329 ATTTAAACCT-GATTGTATTCAGTTTTTGACTCGA-G
1 GTTT-AATCTAGATCATTTTCATTTTTTGACTC-ATG
** *
5361364 GTTTAATCCT-GGCCGTTTTCATTTTTTGACTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * * ***
5361399 ATTTAATTTCGGTCATTTTCATTTTCTT-ACTCGCA
1 GTTTAATCTAGATCATTTTCATTTT-TTGACTCATG
* * * * * * *
5361434 GTTTAATCTTGGTCTTTTTTA-TTTCTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * **
5361468 AG-TTAATTTTGATCGTTTTTCTTTTTTTGACTGGTG
1 -GTTTAATCTAGATC-ATTTTCATTTTTTGACTCATG
* ** * **
5361504 GTTTAATCCT-GGTTGTTTCCATTTTTTGACTTGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * *
5361539 GTTTAATCTGGCTCGTTTTCATTTTTTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5361574 GCTTAATCAAGATTATTTTCATTTTTTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5361609 GTTTAATCTAG-TCATTTTTA-TTTTTAACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5361642 G-----TC-----CTTTTTCATTTTTTGACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
*** ** *
5361667 GTTTAATCCCTATCATTTT--TTTTTTGA-TGGGTA
1 GTTTAATCTAGATCATTTTCATTTTTTGACT-CATG
* * ** **
5361700 GTTTAAACCCA-ATCATTTTTGTTTCCTGACTCATG
1 GTTT-AATCTAGATCATTTTCATTTTTTGACTCATG
* **
5361735 GTTTAATCCT-GCTCATTTTTC-TTTTTCTGACTGGTG
1 GTTTAAT-CTAGATCA-TTTTCATTTTT-TGACTCATG
** * *
5361771 GTTTAATCCCGATCATTTCCATTTTCTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * *
5361806 GTTTAATTTTAG-TCATTTCCATTTTCTGGCTCGTG
1 GTTTAA-TCTAGATCATTTTCATTTTTTGACTCATG
* *
5361841 CTTTAATCTAGGTCATTTTC-TTTTTCTGACTCAAT-
1 GTTTAATCTAGATCATTTTCATTTTT-TGACTC-ATG
* ** ** *
5361876 GTTTAATCCCACTTGTTTTTC-TTTTTTGACTCGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * ** * * *
5361911 GTTTAATCCAGGTTGTTTTTCATTTTTTAACTCGTA
1 GTTTAATCTA-GATCATTTTCATTTTTTGACTCATG
* * *
5361947 CTTTAATCCCAG-TCATTTTCATTTCTTGACTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * * *** * * *
5361982 ATTCAAACT-GGTCGCATTCATTTTCTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* **
5362016 GTTTAGTCCCGATCA--TT--TTTTTT---TCAT-
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5362043 -TTT--TC--GATCGTTTTCATTTTCTGACTCTTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5362073 GTTTAATCCCAATCCCA-ATCGTTTTCGTTTTCTGACTCAAT-
1 GTTTAAT--C--T---AGATCATTTTCATTTTTTGACTC-ATG
* * *
5362114 GTTTAATCTCGATCGTTTTCCTTTTTCT-AGCT-AGTG
1 GTTTAATCTAGATCATTTTCATTTTT-TGA-CTCA-TG
* * **
5362150 GTTTAATCTCGATCATTTTCATTTTCTGACTTGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5362185 GTTTAATCCT-TATCGTTTTCATTTTTTGACT-AGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCA-TG
* * * *
5362220 ATTTAATCCT-GGTCATTTT-TTATTTTTGACTCGTG
1 GTTTAAT-CTAGATCATTTTCAT-TTTTTGACTCATG
* * * * *
5362255 ATTTAATCTCAG-TCGTTGTCATTTCTTGGCTCATG
1 GTTTAATCT-AGATCATTTTCATTTTTTGACTCATG
* ** * * * *
5362290 ATTTAATCCCGATTAATTTCATTTCTTAACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * ** * *
5362325 ATTTAAACCT-GATTGTATTCATTTTTTGACTCGTG
1 GTTT-AATCTAGATCATTTTCATTTTTTGACTCATG
* *
5362360 GTTTAATCCT-GGTCATTTTTATTTTTTGACTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * **
5362395 GTTTAATCTCGGTCATTTTCATTTTCTGACTCGCG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * *
5362430 GTTTAATCTCGATC-TTTTTATTTTTTAACTCGTA
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * **
5362464 GTTTAATAC-GGGTCATTTTCATTTTTTGACTCACA
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
** * * **
5362499 GTTTAATCCCGGTCATTTTCATTTTTTAACTTGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * *
5362534 ATTCAATTTCGATCATTTT--TTGTTCTCTGA--CATG
1 GTTTAATCTAGATCATTTTCATT-TT-T-TGACTCATG
* * * * ** * *
5362568 TGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATG
1 -G-TTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5362605 ATTTATTCTTAG-T-AGTTTTCAATTTTTGA--CATG
1 GTTTAATC-TAGATCA-TTTTCATTTTTTGACTCATG
* * * *
5362638 TGATTTAATATCGATCATTTTCATTTCTCTAACTCATG
1 -G-TTTAATCTAGATCATTTTCATTT-TTTGACTCATG
* * * ** * **
5362676 ATTTAA-CGACGGTTGTTTTTCATTTTCTGACTTGTG
1 GTTTAATCTA--GATCATTTTCATTTTTTGACTCATG
* * * **
5362712 ATTTAATCTCGATCGTTTTCATTTTTTGACTCACA
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5362747 GTTTAATCCT-GATCATTTTCATTTTTTAACTCGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * ** ** *
5362782 GTTTAATCTCGGTTGTTTTTGTTTTTTGACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * *
5362817 GTTTAATTTTGGTCATTTTCATTTTTTGACTTACG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* ** * * ** *
5362852 ATTTAAT-TCCCATCGCTTTT-GTTTCCTGACTCGTG
1 GTTTAATCT-AGATC-ATTTTCATTTTTTGACTCATG
* * * *
5362887 ATTTAATCCTAG-TCACTTTCATTTTTCTGATTCGTG
1 GTTTAAT-CTAGATCATTTTCATTTTT-TGACTCATG
* * ** *
5362923 ATTTAATCCTTG-TTGTTTTCATTTTCTGACTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * * ** **
5362958 ATTTAATTTTGGTTGTTTTCATTATCTAAGA-TGCA--
1 GTTTAATCTAGATCATTTTCATT-T-TTTGACT-CATG
* * * * *
5362993 ATCTAATCCCTCG--CATTTTCATTTTATGACTCGTG
1 GTTTAAT--CTAGATCATTTTCATTTTTTGACTCATG
* * *
5363028 G-TTATTCTCAG-TCATTTTCATTTTCTGACCCATG
1 GTTTAATCT-AGATCATTTTCATTTTTTGACTCATG
* ** * ***
5363062 ATTTAATCCT-GATTGTTTTTCTTTTTTTGACTGGCG
1 GTTTAAT-CTAGA-TCATTTTCATTTTTTGACTCATG
* * ** **
5363098 GTTTAATCTTGGTTGTTTTCATTTTTTGACTTGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5363133 GTTTAATCTGGCTCGTTTTCATTTTTTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5363168 GCTTAATCAAGAAT-ATTTTCATTTTTTGACTCATG
1 GTTTAATCTAG-ATCATTTTCATTTTTTGACTCATG
5363203 GTTTAATCATAG-TCATTTTCATTTTTTGACTCATG
1 GTTTAATC-TAGATCATTTTCATTTTTTGACTCATG
* *
5363238 G-----TC-----CCTTTTCA-TTTTTGACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
*** * ** *
5363262 GTTTAATCCCTATCATTTTTCTTTTTTTGA-TGGGTA
1 GTTTAATCTAGATCA-TTTTCATTTTTTGACT-CATG
* * * **
5363298 GTTTAATCCCA-ATCGTTTTCATTTTCTGACTTGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * ** *
5363333 GTTTAATCTGGGTTGTTTTCATTTTTTGACTCACG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* ** * * * **
5363368 ATTTAATCCCCG-TCGTTTTCATCTTCTGACTCCCG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* **
5363403 GTATAATC-ATGATCATTTTCATTTTTTGACTTGTG
1 GTTTAATCTA-GATCATTTTCATTTTTTGACTCATG
* * * * *
5363438 ATTTAATCTCGATCGTTCTTTATCTTTTGACTCAAT-
1 GTTTAATCTAGATCATT-TTCATTTTTTGACTC-ATG
* *
5363474 -TTTCAATC-ACGATCGTTTTCATTTTTTGACTCACG
1 GTTT-AATCTA-GATCATTTTCATTTTTTGACTCATG
* * * * *
5363509 ATTTAAACCT-GATCGTATTCATTTTCTGACTCATG
1 GTTT-AATCTAGATCATTTTCATTTTTTGACTCATG
*
5363544 GTTTAATCCCA-ATCATTTT--TTCTTTT--CT--T-
1 GTTTAAT-CTAGATCATTTTCATT-TTTTGACTCATG
* * * * * * *
5363573 -TTT--T-T-TATCGTTCTCATTTTCTAACTCGTA
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* *
5363603 GCTTAAT-TGCAG-TCATTTTCATTTCTTGACTCATG
1 GTTTAATCT--AGATCATTTTCATTTTTTGACTCATG
* * **
5363638 GTTTAATCCT-GCTTATTTTTC-TTTTTCTGACTGGTG
1 GTTTAAT-CTAGATCA-TTTTCATTTTT-TGACTCATG
* * * * *
5363674 GTTTAATGC-CGGTCATTTCCATTTTCTGGCTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * * *
5363709 GTTTAATCTTAG-TCGTTTCCATTTTCTGGCTCGTG
1 GTTTAATC-TAGATCATTTTCATTTTTTGACTCATG
* * *
5363744 CTTTAATCTAGGTCATTTTCTTTTTTTGACTCAAT-
1 GTTTAATCTAGATCATTTTCATTTTTTGACTC-ATG
* * ** * *
5363779 GTTTAATCCCA-CTTGTTTTCATTTTCTGACTCGTG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* ** * * * *
5363814 GTTTAATCTAGGTTGTTTTTCATTTTTTAAATCGTA
1 GTTTAATCTA-GATCATTTTCATTTTTTGACTCATG
* * * *
5363850 CTTTAATCTCAG-TCTTTTTCATTTCTTGACTTATG
1 GTTTAATCT-AGATCATTTTCATTTTTTGACTCATG
* * * * *** * * *
5363885 ATTCAAACT-GGTCGCATTCATTTTCTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* ** *
5363919 GTTTAGTCCCGATCA-TTT--TTTTTT---TCATT
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * ** * * * ** *
5363948 TTTTGATC-ATTTTCATTTTCTGACTTGTGGTTTAAT-
1 GTTTAATCTA-GATCATTTTC--ATTTTTTGACTCATG
** * * *
5363984 G-CCAATCCCA-ATCGTTTTCATTTTCTGACTCAAT-
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTC-ATG
*
5364018 GTTTAATCTTAG-TCATTTTCCTTTTTCT-AGCT-AGTG
1 GTTTAATC-TAGATCATTTTCATTTTT-TGA-CTCA-TG
* * *
5364054 GTTTAATCTCGATCATTTTC-TTTTTCTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTT-TGACTCATG
* ** *
5364089 GTTTAATCCT-TATCGCTTTCATTTTTTGACTAGTCATT
1 GTTTAAT-CTAGATCATTTTCATTTTTTGAC---TCATG
* * *
5364127 TTTTGA-CTAG-TCATTTAATCCTAGTCATTTTTTATTTCTGACTCGTG
1 GTTTAATCTAGATCA--T--T--T--TCA---T-T-TTT-TGACTCATG
* * * *
5364174 ATTTAATCTCAG-TCGTTGTCATTTCTTGACTCATG
1 GTTTAATCT-AGATCATTTTCATTTTTTGACTCATG
* * ** * *
5364209 ATTTAATCCCA-ATTGTTTTCATTTTTTAACTCACG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * ** ** * *
5364244 ATTTAAACCCGATTGTATTCATTTTTTGACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
*
5364279 GTTTAATCCTAG-TCGTTTTCATTTTTTGACTCATG
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
* * * * *
5364314 GTTTAATCTCGGTCCTTTTCATTTTCTGACTCACG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * * * * *
5364349 ATTTAATCTCGATCTTTTTTATTTTCTAACTCGTA
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * **
5364384 GTTTAATAC-GGGTCATTTTCATTTTTCGACTCACA
1 GTTTAAT-CTAGATCATTTTCATTTTTTGACTCATG
** * *
5364419 GTTTAATCCCGATCATTTTCATTTTTTAACTCGTG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * * * *
5364454 ATTTAATTTCGATCATTTTTCGTTCTCTGA--CATG
1 GTTTAATCTAGATCA-TTTTCATTTTTTGACTCATG
* * * * ** * **
5364488 TGATTTAGTTTCGGTGGTTTTGATTTTTTGACTCACA
1 -G-TTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5364525 ATTTATTCTCAG-T-AGGTTTCGA-TTTTTGA--CATG
1 GTTTAATCT-AGATCA-TTTTC-ATTTTTTGACTCATG
* * *
5364558 TGATTTAATATCGATCATTTTCATTTCTCTGACTCATG
1 -G-TTTAATCTAGATCATTTTCATTT-TTTGACTCATG
* * *
5364596 ATTT-CTCT-GATCATTTTCA---TTTGACTTATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * * *
5364626 GTTTAATCTGGCTCGTTTTCATTGTTTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
* * *
5364661 GCTTAATCAAGATTATTTTCATTTTTTGACTCATG
1 GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
*
5364696 GTTTAATCATAG-TCATTTTCATTTTTTGACTCGTG
1 GTTTAATC-TAGATCATTTTCATTTTTTGACTCATG
5364731 GT
1 GT
5364733 CCTTTTTCAT
Statistics
Matches: 2625, Mismatches: 673, Indels: 563
0.68 0.17 0.15
Matches are distributed among these distances:
22 4 0.00
24 29 0.01
25 22 0.01
26 11 0.00
27 2 0.00
28 8 0.00
29 17 0.01
30 20 0.01
31 13 0.00
32 19 0.01
33 64 0.02
34 217 0.08
35 1648 0.63
36 429 0.16
37 43 0.02
38 18 0.01
39 1 0.00
40 1 0.00
41 30 0.01
42 2 0.00
44 3 0.00
45 1 0.00
47 9 0.00
48 3 0.00
49 7 0.00
50 4 0.00
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (35 bp):
GTTTAATCTAGATCATTTTCATTTTTTGACTCATG
Found at i:5362546 original size:104 final size:105
Alignment explanation
Indices: 5362345--5362553 Score: 276
Period size: 104 Copynumber: 2.0 Consensus size: 105
5362335 GATTGTATTC
* * * * * ** *
5362345 ATTTTTTGACTCGTGGTTTAATCCTGGTCATTTTTATTTTTTGACTCATGGTTTAATCTCGGTCA
1 ATTTTTTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAATCCCGGTCA
* * *
5362410 TTTTCATTTTCTGACTCGCGGTTTAATCTCGATC-TTTTT
66 TTTTCATTTTCTAACTCGCGATTCAATCTCGATCATTTTT
5362449 ATTTTTTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAATCCCGGTCA
1 ATTTTTTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAATCCCGGTCA
* * * *
5362514 TTTTCATTTTTTAACTTGTGATTCAATTTCGATCATTTTT
66 TTTTCATTTTCTAACTCGCGATTCAATCTCGATCATTTTT
5362554 TGTTCTCTGA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
104 84 0.94
105 5 0.06
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (105 bp):
ATTTTTTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTCACAGTTTAATCCCGGTCA
TTTTCATTTTCTAACTCGCGATTCAATCTCGATCATTTTT
Found at i:5363236 original size:24 final size:24
Alignment explanation
Indices: 5363209--5363258 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
5363199 CATGGTTTAA
5363209 TCATAGT-CATTTTCATTTTTTGAC
1 TCATAGTCCATTTTCA-TTTTTGAC
* *
5363233 TCATGGTCCCTTTTCATTTTTGAC
1 TCATAGTCCATTTTCATTTTTGAC
5363257 TC
1 TC
5363259 GTGGTTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.16, C:0.22, G:0.10, T:0.52
Consensus pattern (24 bp):
TCATAGTCCATTTTCATTTTTGAC
Found at i:5364127 original size:15 final size:15
Alignment explanation
Indices: 5364107--5364142 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
5364097 CTTATCGCTT
5364107 TCATTTTTTGACTAG
1 TCATTTTTTGACTAG
5364122 TCATTTTTTGACTAG
1 TCATTTTTTGACTAG
5364137 TCATTT
1 TCATTT
5364143 AATCCTAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.11, T:0.56
Consensus pattern (15 bp):
TCATTTTTTGACTAG
Found at i:5364459 original size:35 final size:35
Alignment explanation
Indices: 5364165--5368265 Score: 516
Period size: 35 Copynumber: 118.5 Consensus size: 35
5364155 TTTTTATTTC
* * * *
5364165 TGACTCGTGATTTAATCTC-AGTCGTTGTCATTTCT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* *
5364200 TGACTCATGATTTAATCCCAATTGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5364235 TAACTCACGATTTAAACCCGATTGTATTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * *
5364270 TGACTCGTGGTTTAAT-CCTAGTCGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * * * *
5364305 TGACTCATGGTTTAATCTCGGTCCTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5364340 TGACTCACGATTTAATCTCGATCTTTTTTATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * * *
5364375 TAACTCGT-AGTTTAATACGGGTCATTTTCATTTTT
1 TGACTCATGA-TTTAATCCCGATCGTTTTCATTTTT
* * *
5364410 CGACTCA-CAGTTTAATCCCGATCATTTTCATTTTT
1 TGACTCATGA-TTTAATCCCGATCGTTTTCATTTTT
* * ** * * * *
5364445 TAACTCGTGATTTAATTTCGATCATTTTTCGTTCTC
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
* * ** * * *
5364481 TGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTT
1 TGAC-TCATGATTTAATCCCGATCGTTTTCATTTTT
** * * * *
5364516 TGACTCACAATTTATTCTC-AGTAGGTTTCGA-TTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTC-ATTTTT
* ** * *
5364551 TGACAT-GTGATTTAATATCGATCATTTTCATTTCTC
1 TGAC-TCATGATTTAATCCCGATCGTTTTCATTT-TT
* * *
5364587 TGACTCATGATTT-CT-CTGATCATTTTCA---TT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * ** * *
5364617 TGACTTATGGTTTAATCTGGCTCGTTTTCATTGTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** ** **
5364652 TGACTCATGGCTTAATCAAGATTATTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** *
5364687 TGACTCATGGTTTAAT-CATAGTCATTTTCATTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
**
5364722 TGACTC--G---TGGT-CC--T--TTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * * *
5364747 TGAACTCGGTGGTTCTTATCCCTATCATTTTTCTTTTTT
1 TG-ACTC-ATGATT-TAATCCCGATC-GTTTTCATTTTT
** * * *
5364786 TGA-T-GGGTAGTTTAAT-CCAATCATTTTCA-TTTC
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
* * * * *
5364819 TAACTCTGTGGTTTAAT-CCTAGT-GTTTTCATTTTC
1 TGACTC-ATGATTTAATCCCGA-TCGTTTTCATTTTT
** * *
5364854 TGACT--TGTAGTTTAATCTAGGTTGTTTTCATTTTT
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
** * * * *
5364889 TGGGTCACGATTTAATCCCTATCGTTTTCGTCTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5364924 CGACTCACGGTTTAATCGCGATCATTTTCATTTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCA-TTTTT
*** * * * *
5364960 TGACTTGCGATTTAATCTCAATCATTCATCATTTTT
1 TGACTCATGATTTAATCCCGATCGTT-TTCATTTTT
* * * *
5364996 TGACTCGTGTTTTAATCACGATCGTTTTCATTTCT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
*** ** * **
5365031 TGACTCGCAACGTAAACCCGATCGCATTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5365066 TGACTCATGGTTTAATTCCAATCATTTTTCA---TT
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
** * **** ***
5365099 T---TCATTTTTTTATCGTTCTCGTTTTC-TAAAT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * **
5365130 TG--T-A-G-CTTAGTTCC-AGTCATTTTCATTTCC
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* ** * *
5365160 TGACTCATGCTTTAATCTTGCTCATTTT--TTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5365193 TGACTGGA-GGTTTAATCCCGGTCATTTTCATTTTT
1 TGACT-CATGATTTAATCCCGATCGTTTTCATTTTT
* ** * *
5365228 TGACTGATGATTTAAT-CTTAGTCGTTTCCTTTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * *** * *
5365263 TGGCTCATGCTTTAATGTAGGTCATTTTC-TTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** **
5365297 CTGACTGAATG-TTTAATCCCCCTTTTTTTCATTTTT
1 -TGACT-CATGATTTAATCCCGATCGTTTTCATTTTT
** * * * *
5365333 TGACTTGTGGTTTAATCCAGGTTGTTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCG-TTTTCATTTTT
* * * *
5365369 TAACT--TGTACTTTAATCCCAATCTTTTTCATTTCT
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
* * * * * *
5365404 TGACTCATGATTCAA-ACTGGTCGTATTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * *
5365438 T-ACCTCGTGGTTTAGA-CCCGATC--ATT--TTTTT
1 TGA-CTCATGATTTA-ATCCCGATCGTTTTCATTTTT
*
5365469 T---TCAT--TTT--T--CGATCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * ** *
5365495 TGACTCGTGGTTTAATTCCAATCCCAATCCTTTTTGTTTTC
1 TGACTCAT-G----ATT-TAATCCCGATCGTTTTCATTTTT
* * *
5365536 TGACACAATG-TTTAATCTCGATCGTTTTCCTTTTT
1 TGACTC-ATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5365571 TCTAGCT-AGTGGTTTAATCTCGATCATTTTCATTTTT
1 T-GA-CTCA-TGATTTAATCCCGATCGTTTTCATTTTT
* ** *
5365608 TGACTCGTGATTTAATCCTTATCGTTTTCACTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5365643 TGACT-AGTGATTTAA-CCTGGTCATTTT-TTATTTT
1 TGACTCA-TGATTTAATCCCGATCGTTTTCAT-TTTT
* * * *
5365677 TGACTCGTGATTTAATCTC-AGTCGTTGTCATTTCT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * * *
5365712 TGACTCAAGATTTAATCTCGATTGTTTTCATTTCT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** ** * * *
5365747 TAACTCGCGATTTAAAGCTGATTGTATTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * ** *
5365782 TGACTCGTGGTTTAATCCTGGCCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** * * *
5365817 TGACTCATGATTTAATTTCGGTCATTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** * * * * *
5365852 TGACTCGCGGTTTAATCTCGATCTTTTTTA-TTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *** *
5365886 TAACTCGTGAGTTAATTTTGATCGTTTTTCTTTTTT
1 TGACTCATGATTTAATCCCGATCG-TTTTCATTTTT
** * * * * *
5365922 TGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** * ** *
5365957 TGACTTGTGGTTTAATCTGGCTCGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** ** **
5365992 AGACTCATGGCTTAATCAGGATTATTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** * *
5366027 TGACTCATGGTTTAATCTAG-TCATTTTTATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* *
5366061 TAACTCATG-----GT-CC--T--TTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366086 TGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTT
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
** * *** * * **
5366122 TGA-T-GGGTAGTTTAAACTTAATCATTTTCGTTTCC
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
* * * *
5366157 TGACTCATGGTTTAATCCTGCTCATTTTTC-TTTTT
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
** * *
5366192 CTGACTGGTGGTTTAATCCCCG-TCATTTTCATTTTCT
1 -TGACTCATGATTTAAT-CCCGATCGTTTTCATTTT-T
* *** * *
5366229 T-ACTCATGGTTTAAT-TTTAGTCGTTTCCATTTTC
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * * ** * *
5366263 TGGCTCGTGCTTTAATCTAGGTCATTTTC-TTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* **
5366297 CTGACTCAATG-TTTAATCCC-ACTTGTTTTTTTTTTTTT
1 -TGACTC-ATGATTTAATCCCGA-TCG--TTTTCATTTTT
* * ** * **
5366335 TGACTCGTGGTTTAATCTAGGTTATTTTTCATTTTT
1 TGACTCATGATTTAATC-CCGATCGTTTTCATTTTT
* * * *
5366371 TAACTCGT-ACTTTAATCCC-AGTCATTTTCATTTCT
1 TGACTCATGA-TTTAATCCCGA-TCGTTTTCATTTTT
* * * * * ** *
5366406 TGACTCACGATTCAA-ACTGGTCGCATTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366440 TAACTCGTGGTTTAGTCCCGATC--ATT--TTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
*
5366471 T---TCAT--TTT--T--CGATTGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366497 TGACTCTTGGTTTAATCCCAATCCCGATCGTTTGCGTTTTC
1 TGACTCAT-GATT--T---AATCCCGATCGTTTTCATTTTT
* *
5366538 TGACTCAATG-TTTAATCTCGATCGTTTTCCTTTTT
1 TGACTC-ATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366573 CT-AGCT-AGTGGTTTTATCTCGATCATTTTCATTTTC
1 -TGA-CTCA-TGATTTAATCCCGATCGTTTTCATTTTT
* * **
5366609 TGACTCGTGGTTTAATCCTTATCGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5366644 TGACT-AGTGATTTAATCCTGGTCATTTT-TTATTTT
1 TGACTCA-TGATTTAATCCCGATCGTTTTCAT-TTTT
* * * *
5366679 TGACTCGTGATTTAATCTC-AGTCGTTGTCATTTCT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * *
5366714 TGGCTCATGATTTAATCCCGATTGTTTTCATTTCT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366749 TAACTCATGATTTAAACCTGATTGTATTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366784 TGACTCGTGGTTTAATCCTGGTCATTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5366819 TGACTCATGGTTTAGTCTCGGTCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * *
5366854 TGACTC--GCAGTTTAATCTCGATCTTTTTTATTTTT
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
* * * * * *
5366889 TAACTCGT-AGTTTAATACGGGTCATTTTCATTTTT
1 TGACTCATGA-TTTAATCCCGATCGTTTTCATTTTT
* * * *
5366924 TGACTCA-CAGTTTAATCTCGGTCATTTTCATTTTT
1 TGACTCATGA-TTTAATCCCGATCGTTTTCATTTTT
* * ** * * * *
5366959 TAACTCATGATTCAATTTCGATCATTTTTTATTCTC
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
* * ** * * * *
5366995 TGACAT-GTGATTTAGTTTCGGTGGTTTTGATTTTC
1 TGAC-TCATGATTTAATCCCGATCGTTTTCATTTTT
* ** * *
5367030 TGACTCATGATTT-ATTCTTAGTAGTTTTCAATTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* ** *
5367065 TGACAT-GTGATTTAATATCGATCATTTTCA-TTTT
1 TGAC-TCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5367099 TGACTCGTGATTTAATCTC-AGTCGTTGTCATTTCT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * *
5367134 TGACTCAAGATTTAATCCCGATTGTTTTCATTTCT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** ** * *
5367169 TAACTCGCGATTTAAAACTGATCATTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5367204 TGACTCGTGGTTTAATCCTG-TCCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGAT-CGTTTTCATTTTT
* ** * *
5367239 TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * *
5367274 TGACTC--GCAGTTTAATCTCGATCTTTTTTA-TTTC
1 TGACTCATG-A-TTTAATCCCGATCGTTTTCATTTTT
* * * *** *
5367308 TAACTCGTGAGTTAATTTTGATCGTTTTTCTTTTTT
1 TGACTCATGATTTAATCCCGATCG-TTTTCATTTTT
** * ** * *
5367344 TGACTGGTGGTTTAAT-CATAGTTGTTTCCATTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
** * ** *
5367379 TGACTTGTGGTTTAATCTGGCTCGTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
*
5367414 TGACTC--G---TGAT-CC--T--TTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** * ** * *
5367439 TGACTTGTGGTTTAATCATGCTCATTTTTC-TTTTT
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
* ** ** * * * *
5367474 CTGATTGGTGGCTTAAT-CCTAGTCATTTCCATTTTC
1 -TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* ** * *
5367510 TGACTCATGGTTTAAT-CTTAGTCATTTCCATTTTCT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTT-T
* * * ** *
5367546 CG-CTCGTGCTTTAATCTAGATCATTTTC-TTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* *
5367579 CTGACTCAATG-TTTAATACC-ACTTGTTTTTC-TTTTT
1 -TGACTC-ATGATTTAATCCCGA-TCG-TTTTCATTTTT
* * * * * *
5367615 TCACTCGTGGTTTAATCCAGGTTGTTTTTCATTTTT
1 TGACTCATGATTTAATCCCGATCG-TTTTCATTTTT
* * * *
5367651 TAACTCGT-ACTTTAATCCC-AGTCATTTTCATTTCT
1 TGACTCATGA-TTTAATCCCGA-TCGTTTTCATTTTT
* * * ** *
5367686 TGACTCATGATTCAAAT--TGGTCGCATTCATTTTC
1 TGACTCATGATT-TAATCCCGATCGTTTTCATTTTT
* * * * *
5367720 TAACCCATGGTTTAATCCTGATCGTTTTTCTTTTTT
1 TGACTCATGATTTAATCCCGATCG-TTTTCATTTTT
** * * * * *
5367756 TGACTGGTGGTTTAAT-TCTAGTTGTTTCCATTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* ** * * *
5367791 TGACTTC-TGGTTTAATCTTGGTTGTTTCCATTTTT
1 TGAC-TCATGATTTAATCCCGATCGTTTTCATTTTT
* * ** * *
5367826 TGACTTATGGTTTAATCTGGCTCGTTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* ** ** * *
5367861 TGACTCAT-AGCTTAATCAGGATTATTTACGTTTTT
1 TGACTCATGA-TTTAATCCCGATCGTTTTCATTTTT
* ** *
5367896 TGACTCATGGTTTAAT-CATAGTCATTTTCATTTTT
1 TGACTCATGATTTAATCCCGA-TCGTTTTCATTTTT
* * * * *
5367931 TGACTCGTGGTTTAATCCCCATCATTTTTCTTTTTT
1 TGACTCATGATTTAATCCCGATC-GTTTTCATTTTT
* * * *
5367967 TGA-TGGGCA-G-TTTAATCACAATCATTTTCATTTTC
1 TGACT---CATGATTTAATCCCGATCGTTTTCATTTTT
** * ** * * *
5368002 TGACTTGTGGTTTAATCTTGGTCATTTTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
** * ** * * *
5368037 TGACTTGTGGTTTAATCTGGGTTGTTTTCACTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * * * *
5368072 TGACTAATGATTTAATTCCC-ATCATTTCCATCTTC
1 TGACTCATGATTTAA-TCCCGATCGTTTTCATTTTT
* * * ** * *
5368107 CGACTCACGGTTTAATCATGGTCATTTTCATTTTTT
1 TGACTCATGATTTAATCCCGATCGTTTTCA-TTTTT
* * * *
5368143 TGACTTACGGTTTAATCTCGATCGTTCTTCATTTTT
1 TGACTCATGATTTAATCCCGATCGTT-TTCATTTTT
* * * ** * *
5368179 TTACTCGTGTTTTAATCATGATCATTTTCATTTCT
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
* * ** *
5368214 TGACTCGTGATTTAAACCCGATCGCATTCATTTTC
1 TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
*
5368249 TGACTCATGACTTAATC
1 TGACTCATGATTTAATC
5368266 GCAATCATTT
Statistics
Matches: 2955, Mismatches: 848, Indels: 526
0.68 0.20 0.12
Matches are distributed among these distances:
22 9 0.00
24 5 0.00
25 46 0.02
26 21 0.01
27 4 0.00
28 6 0.00
29 23 0.01
30 36 0.01
31 16 0.01
32 15 0.01
33 54 0.02
34 260 0.09
35 1853 0.63
36 478 0.16
37 63 0.02
38 9 0.00
39 14 0.00
40 2 0.00
41 39 0.01
42 2 0.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (35 bp):
TGACTCATGATTTAATCCCGATCGTTTTCATTTTT
Found at i:5364601 original size:16 final size:15
Alignment explanation
Indices: 5364580--5364609 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
5364570 GATCATTTTC
5364580 ATTTCTCTGACTCATG
1 ATTTCTCTGA-TCATG
5364596 ATTTCTCTGATCAT
1 ATTTCTCTGATCAT
5364610 TTTCATTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.23, G:0.10, T:0.47
Consensus pattern (15 bp):
ATTTCTCTGATCATG
Found at i:5364847 original size:34 final size:34
Alignment explanation
Indices: 5364809--5364886 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
5364799 AATCCAATCA
*
5364809 TTTTCATTTCTAACTCTGTGGTTTAATCCTA-G-TG
1 TTTTCATTTCTAACT-TGTAGTTTAAT-CTAGGTTG
*
5364843 TTTTCATTTTCTGACTTGTAGTTTAATCTAGGTTG
1 TTTTCA-TTTCTAACTTGTAGTTTAATCTAGGTTG
5364878 TTTTCATTT
1 TTTTCATTT
5364887 TTTGGGTCAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 3 0.08
34 20 0.51
35 16 0.41
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (34 bp):
TTTTCATTTCTAACTTGTAGTTTAATCTAGGTTG
Found at i:5364984 original size:36 final size:36
Alignment explanation
Indices: 5364925--5365038 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 36
5364915 TTCGTCTTTC
* * *
5364925 GACTCACGGTTTAATCGCGATCATTTTCATTTTTTT
1 GACTCGCGATTTAATCACGATCATTTTCATTTTTTT
* * * *
5364961 GACTTGCGATTTAATCTCAATCATTCATCA-TTTTTT
1 GACTCGCGATTTAATCACGATCATT-TTCATTTTTTT
* * * *
5364997 GACTCGTGTTTTAATCACGATCGTTTTCA-TTTCTT
1 GACTCGCGATTTAATCACGATCATTTTCATTTTTTT
5365032 GACTCGC
1 GACTCGC
5365039 AACGTAAACC
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
35 14 0.23
36 45 0.73
37 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (36 bp):
GACTCGCGATTTAATCACGATCATTTTCATTTTTTT
Found at i:5366078 original size:24 final size:25
Alignment explanation
Indices: 5366050--5366096 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
5366040 AATCTAGTCA
5366050 TTTTT-ATTTTTTAACTCATGGTCC
1 TTTTTCATTTTTTAACTCATGGTCC
* *
5366074 TTTTTCATTTTTTGACTCGTGGT
1 TTTTTCATTTTTTAACTCATGGT
5366097 TTAATCCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.13, C:0.15, G:0.13, T:0.60
Consensus pattern (25 bp):
TTTTTCATTTTTTAACTCATGGTCC
Found at i:5366206 original size:71 final size:71
Alignment explanation
Indices: 5366075--5366243 Score: 180
Period size: 71 Copynumber: 2.4 Consensus size: 71
5366065 TCATGGTCCT
** * * *
5366075 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATGGGTAGTTTAAACT
1 TTTTCATTTCCTGACTCATGGTTTAATCCCTATCATTTTTCTTTTTCTGATGGGTAGTTTAAACC
*
5366140 TAATCA
66 CAATCA
* * * *
5366146 TTTTCGTTTCCTGACTCATGGTTTAAT-CCTGCTCATTTTTCTTTTTCTGACT-GGTGGTTTAAT
1 TTTTCATTTCCTGACTCATGGTTTAATCCCT-ATCATTTTTCTTTTTCTGA-TGGGTAGTTTAAA
**
5366209 CCCCGTCA
64 CCCAATCA
* *
5366217 TTTTCATTTTCTTACTCATGGTTTAAT
1 TTTTCATTTCCTGACTCATGGTTTAAT
5366244 TTTAGTCGTT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
70 3 0.04
71 77 0.95
72 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.13, T:0.52
Consensus pattern (71 bp):
TTTTCATTTCCTGACTCATGGTTTAATCCCTATCATTTTTCTTTTTCTGATGGGTAGTTTAAACC
CAATCA
Found at i:5367307 original size:140 final size:141
Alignment explanation
Indices: 5366588--5368254 Score: 642
Period size: 140 Copynumber: 11.9 Consensus size: 141
5366578 TAGTGGTTTT
* * * * * * *
5366588 ATCTCGATCATTTTCATTT-TCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGT
1 ATCTCGATCTTTTTCATTTCT-TAACTCGTGATTTAATACTGATCATTTTCATTTTTTGACTCGT
* * * * * *
5366652 GATTTAATCCTGGTCATTTT-TTATTTTTGACTCGTGATTTAATCTCAGTCGTTGTCA-TTTCTT
65 GGTTTAATCCTGGTCATTTTCAT-TTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTC-T
*
5366715 GGCT--CATGATTTA
128 GACTCGCA-GATTTA
* * ** *
5366728 ATCCCGAT-TGTTTTCATTTCTTAACTCATGATTTAA-ACCTGATTGTATTCATTTTTTGACTCG
1 ATCTCGATCT-TTTTCATTTCTTAACTCGTGATTTAATA-CTGATCATTTTCATTTTTTGACTCG
*
5366791 TGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAGTCTCGGTCGTTTTCATTTTCTG
64 TGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTG
5366856 ACTCGCAG-TTTA
129 ACTCGCAGATTTA
* * * * **
5366868 ATCTCGATCTTTTTTATTTTTTAACTCGT-AGTTTAATACGGGTCATTTTCATTTTTTGACTCAC
1 ATCTCGATCTTTTTCATTTCTTAACTCGTGA-TTTAATACTGATCATTTTCATTTTTTGACTCGT
* * * * * * * * *
5366932 AGTTTAAT-CTCGGTCATTTTCATTTTTTAACTCATGATTCAATTTCGATCATTTTTTATTCTCT
65 GGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTC-GTTTTCATTTTCT
*
5366996 GACAT-G-TGATTTA
128 GAC-TCGCAGATTTA
* * * ** * * * * * *
5367009 GTTTCGGTGGTTTTGATTT-TCTGACTCATGATTT-ATTCTTAGT-AGTTTTCAATTTTTGACAT
1 ATCTCGATCTTTTTCATTTCT-TAACTCGTGATTTAATACTGA-TCA-TTTTCATTTTTTGAC-T
* * * * * * *
5367071 -GTGATTTAAT-ATCGATCATTTTCA-TTTTTGACTCGTGATTTAATCTCAGTCGTTGTCA-TTT
62 CGTGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTT
*
5367132 CTTGACTC-AAGATTTA
126 C-TGACTCGCAGATTTA
* * *
5367148 ATCCCGAT-TGTTTTCATTTCTTAACTCGCGATTTAAAACTGATCATTTTCATTTTTTGACTCGT
1 ATCTCGATCT-TTTTCATTTCTTAACTCGTGATTTAATACTGATCATTTTCATTTTTTGACTCGT
* * *
5367212 GGTTTAATCCT-GTCCGTTTTCATTTTCTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTG
65 GGTTTAATCCTGGT-CATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTG
5367276 ACTCGCAG-TTTA
129 ACTCGCAGATTTA
* * ** * * *
5367288 ATCTCGATCTTTTTTATTTC-TAACTCGTGAGTTAATTTTGATCGTTTTTCTTTTTTTGACTGGT
1 ATCTCGATCTTTTTCATTTCTTAACTCGTGATTTAATACTGATC-ATTTTCATTTTTTGACTCGT
* * ** * ** *
5367352 GGTTTAATCATAGTTGTTTCCATTTTTTGACTTGTGGTTTAATCT-GGCTCGTTTTCATTTTTTG
65 GGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGG-TCGTTTTCATTTTCTG
*
5367416 ACT--C-G---TG
129 ACTCGCAGATTTA
* * * * * * *
5367423 A--TC---CTTTTTCATTTTTTGACTTGTGGTTTAAT-CATGCTCATTTTTC-TTTTTCTGATTG
1 ATCTCGATCTTTTTCATTTCTTAACTCGTGATTTAATAC-TGATCA-TTTTCATTTTT-TGACTC
* * * * ** * *
5367481 GTGGCTTAATCCTAGTCATTTCCATTTTCTGACTCATGGTTTAATCTTAGTCATTTCCATTTTCT
63 GTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCT
* *
5367546 CG-CTCG-TGCTTTA
128 -GACTCGCAGATTTA
* * * * * * ** *
5367559 ATCTAGATCATTTTC-TTTTTCTGACTCAATG-TTTAATAC-CACTTGTTTTTC-TTTTTTCACT
1 ATCTCGATCTTTTTCATTTCT-TAACTC-GTGATTTAATACTGA--TCATTTTCATTTTTTGACT
* ** * * ** * * *
5367620 CGTGGTTTAATCCAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCCCAGTCATTTTCA-TTT
62 CGTGGTTTAATCCTGG-TCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTT
*
5367684 CTTGACT--CATGATTCAA
126 C-TGACTCGCA-GATT-TA
* *** * * * * * * *
5367701 AT-T-GGTCGCATTCATTT-TCTAACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGG
1 ATCTCGATCTTTTTCATTTCT-TAACTCGTGATTTAATACTGATC-ATTTTCATTTTTTGACTCG
* * ** * * * * *
5367763 TGGTTTAATTCTAGTTGTTTCCATTTTTTGACTTC-TGGTTTAATCTTGGTTGTTTCCATTTTTT
64 TGGTTTAATCCTGGTCATTTTCATTTTTTGAC-TCATGGTTTAATCTCGGTCGTTTTCATTTTCT
* *
5367827 GACT--TATGGTTTA
128 GACTCGCA-GATTTA
* * * * * * * * * *
5367840 ATCTGGCTCGTTTTCATTT-TCTGACTCAT-AGCTTAAT-CAGGATTATTTACGTTTTTTGACTC
1 ATCTCGATCTTTTTCATTTCT-TAACTCGTGA-TTTAATAC-TGATCATTTTCATTTTTTGACTC
* * * * * ** * * *
5367902 ATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTTTAATCCCCATCATTTTTCTTTTTT
63 GTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTC-GTTTTCATTTTC
*
5367967 TGA-TGGGCAG-TTTA
127 TGACT-CGCAGATTTA
* * * * * * * * *
5367981 ATCACAATCATTTTCATTT-TCTGACTTGTGGTTTAAT-CTTGGTCATTTTCATTTTCTGACTTG
1 ATCTCGATCTTTTTCATTTCT-TAACTCGTGATTTAATAC-TGATCATTTTCATTTTTTGACTCG
** * * * ** * * *
5368044 TGGTTTAAT-CTGGGTTGTTTTCACTTTTTGACTAATGATTTAAT-TCCCATCATTTCCATCTTC
64 TGGTTTAATCCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATCT-CGGTCGTTTTCATTTTC
* * *
5368107 CGACTCAC-GGTTTA
127 TGACTCGCAGATTTA
* * * * * *
5368121 ATCAT-GGTCATTTTCATTTTTTTGACTTACG-G-TTTAAT-CTCGATCGTTCTTCATTTTTTTA
1 ATC-TCGATCTTTTTCA-TTTCTTAAC-T-CGTGATTTAATACT-GATCATT-TTCATTTTTTGA
* * * * * * * * * **
5368182 CTCGTGTTTTAATCATGATCATTTTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTT
60 CTCGTGGTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTT
5368247 TCTGACTC
125 TCTGACTC
5368255 ATGACTTAAT
Statistics
Matches: 1151, Mismatches: 282, Indels: 186
0.71 0.17 0.11
Matches are distributed among these distances:
130 15 0.01
131 80 0.07
132 2 0.00
133 3 0.00
135 2 0.00
136 2 0.00
137 1 0.00
138 8 0.01
139 100 0.09
140 524 0.46
141 334 0.29
142 77 0.07
143 3 0.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (141 bp):
ATCTCGATCTTTTTCATTTCTTAACTCGTGATTTAATACTGATCATTTTCATTTTTTGACTCGTG
GTTTAATCCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTGAC
TCGCAGATTTA
Found at i:5367651 original size:36 final size:35
Alignment explanation
Indices: 5367601--5367668 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
5367591 TTAATACCAC
* **
5367601 TTGTTTTTCTTTTTTCACTCGTGGTTTAATCCAGG
1 TTGTTTTTCTTTTTTAACTCGTACTTTAATCCAGG
5367636 TTGTTTTTCATTTTTTAACTCGTACTTTAATCC
1 TTGTTTTTC-TTTTTTAACTCGTACTTTAATCC
5367669 CAGTCATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 9 0.31
36 20 0.69
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (35 bp):
TTGTTTTTCTTTTTTAACTCGTACTTTAATCCAGG
Found at i:5367944 original size:211 final size:213
Alignment explanation
Indices: 5367725--5368211 Score: 492
Period size: 211 Copynumber: 2.3 Consensus size: 213
5367715 TTTTCTAACC
* * **
5367725 CATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATTC-TAGTTGTTTCCATTT
1 CATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATTCACAATCATTTCCATTT
* ** *
5367789 TTTGACTTCTGGTTTAATCTTGGTTGTTTCCATTTTTTGACTTATGGTTTAATCTGGCTCGTTTT
66 TCTGACTTCTGGTTTAATCTTGGTCATTTCCATTTTCTGACTTATGGTTTAATCTGGCTCGTTTT
* ** * * * ** *
5367854 CA-TTTTCTGACTCAT-AGCTTAA-TCAGGATTATTTACGTTTTTTGACTCATGGTTTAATCATA
131 CACTTTT-TGACTAATGA-CTTAATTC-CCATCATTTACATCTTCCGACTCACGGTTTAATCATA
5367916 GTCATTTTCA-TTTTTTGACT
193 GTCATTTTCATTTTTTTGACT
* ** * *
5367936 CGTGGTTTAATCCCCATCATTTTTCTTTTTTTGA-TGG-GCAGTTTAA-TCACAATCATTTTCAT
1 CATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTG--GTTTAATTCACAATCATTTCCAT
* * * * *
5367998 TTTCTGACTTGTGGTTTAATCTTGGTCATTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTGTT
64 TTTCTGACTTCTGGTTTAATCTTGGTCATTTCCATTTTCTGACTTATGGTTTAATCTGGCTCGTT
* * *
5368063 TTCACTTTTTGACTAATGATTTAATTCCCATCATTTCCATCTTCCGACTCACGGTTTAATCATGG
129 TTCACTTTTTGACTAATGACTTAATTCCCATCATTTACATCTTCCGACTCACGGTTTAATCATAG
5368128 TCATTTTCATTTTTTTGACT
194 TCATTTTCATTTTTTTGACT
* * * * * ** *
5368148 TACGGTTTAAT-CTCGATCGTTCTTCATTTTTTT-ACTCGTGTTTTAA-TCATGATCATTTTCAT
1 CATGGTTTAATCCT-GATCGTTTTTC-TTTTTTTGACTGGTGGTTTAATTCACAATCATTTCCAT
5368210 TT
64 TT
5368212 CTTGACTCGT
Statistics
Matches: 224, Mismatches: 41, Indels: 21
0.78 0.14 0.07
Matches are distributed among these distances:
209 1 0.00
210 5 0.02
211 153 0.68
212 55 0.25
213 9 0.04
214 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (213 bp):
CATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATTCACAATCATTTCCATTT
TCTGACTTCTGGTTTAATCTTGGTCATTTCCATTTTCTGACTTATGGTTTAATCTGGCTCGTTTT
CACTTTTTGACTAATGACTTAATTCCCATCATTTACATCTTCCGACTCACGGTTTAATCATAGTC
ATTTTCATTTTTTTGACT
Found at i:5368424 original size:35 final size:35
Alignment explanation
Indices: 5368318--5368426 Score: 98
Period size: 35 Copynumber: 3.1 Consensus size: 35
5368308 AACTCGTAGC
* * *
5368318 TTAATTCC-AGTCATTTTCATTTCCTGACTCATGGA
1 TTAA-TCCTAGTCATTTTTATTTTCTGACTCATGGT
* * *
5368353 TTCATCCTACTCACTTTTCT-TTTTCTGA-TCGGTGGT
1 TTAATCCTAGTCA-TTTT-TATTTTCTGACTC-ATGGT
*
5368389 TTAATCCTGGTCATTTTTATTTTCTGACTCATGGT
1 TTAATCCTAGTCATTTTTATTTTCTGACTCATGGT
5368424 TTA
1 TTA
5368427 TTTTAGTTGT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
34 4 0.07
35 28 0.48
36 26 0.45
ACGTcount: A:0.17, C:0.21, G:0.13, T:0.49
Consensus pattern (35 bp):
TTAATCCTAGTCATTTTTATTTTCTGACTCATGGT
Found at i:5368804 original size:70 final size:70
Alignment explanation
Indices: 5368729--5368911 Score: 178
Period size: 70 Copynumber: 2.6 Consensus size: 70
5368719 TTGACTCAAT
* * *
5368729 GTTTAATCTCGGTCGTTTTCCTTTTTCT-ACTAGTGGTTTAAT-CTCGATCATTTTCAT-TTTCT
1 GTTTAATCTCAGTCGTTTTCATTTTT-TGACTAGTGATTTAATCCT-GATCATTTT-ATATTTCT
5368791 GACTCGTG
63 GACTCGTG
* * * * *
5368799 GTTTAATC-CTTGTCATTTTTATTTTTTGACTAGTGATTTAATCCTGCTCATTTTTTATTTCTGA
1 GTTTAATCTC-AGTCGTTTTCATTTTTTGACTAGTGATTTAATCCTGATCATTTTATATTTCTGA
*
5368863 CTTGTG
65 CTCGTG
* * *
5368869 ATTTAATCTCAGTCGTTGTCATTTCTTGACTCA-TGATTTAATC
1 GTTTAATCTCAGTCGTTTTCATTTTTTGACT-AGTGATTTAATC
5368912 TCGATTGTTT
Statistics
Matches: 93, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
69 3 0.03
70 86 0.92
71 4 0.04
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (70 bp):
GTTTAATCTCAGTCGTTTTCATTTTTTGACTAGTGATTTAATCCTGATCATTTTATATTTCTGAC
TCGTG
Found at i:5368874 original size:105 final size:109
Alignment explanation
Indices: 5368668--5368878 Score: 240
Period size: 105 Copynumber: 2.0 Consensus size: 109
5368658 TTTTCGATTG
5368668 TTTTCATTTTCTGACTCGTGGTTTAATCCCAATCCCATTGTTTCCATTTTTTTGACTCAATGTTT
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCAATCCCATTGTTT-CATTTTTTTGACTCAATGTTT
* * *
5368733 AATCTCGGTCGTTTTCCTTTTTCTACTAGTGGTTTAATCTCGATCA
65 AATCTCGCTCATTTT-CTTTTTCTACTAGTGATTTAATCTCGATCA
* ** *
5368779 TTTTCATTTTCTGACTCGTGGTTTAAT-CC-TTGTCATT-TTT-A-TTTTTTGACT-AGTGATTT
1 TTTTCATTTTCTGACTCGTGGTTTAATCCCAATCCCATTGTTTCATTTTTTTGACTCAATG-TTT
*
5368838 AATC-CTGCTCATTTT-TTATTTCTGACTTGTGATTTAATCTC
65 AATCTC-GCTCATTTTCTT-TTTCT-ACTAGTGATTTAATCTC
5368879 AGTCGTTGTC
Statistics
Matches: 88, Mismatches: 8, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
103 2 0.02
104 9 0.10
105 39 0.44
106 1 0.01
108 3 0.03
109 5 0.06
110 2 0.02
111 27 0.31
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (109 bp):
TTTTCATTTTCTGACTCGTGGTTTAATCCCAATCCCATTGTTTCATTTTTTTGACTCAATGTTTA
ATCTCGCTCATTTTCTTTTTCTACTAGTGATTTAATCTCGATCA
Found at i:5368928 original size:35 final size:35
Alignment explanation
Indices: 5368719--5368968 Score: 149
Period size: 35 Copynumber: 7.1 Consensus size: 35
5368709 TTCCATTTTT
* *
5368719 TTGACTCAATG-TTTAATCTCGGTCGTTTTCCTTT-
1 TTGACTC-ATGATTTAATCTCGATCGTTTTCATTTC
* * *
5368753 TTCTACT-AGTGGTTTAATCTCGATCATTTTCATTT-
1 TT-GACTCA-TGATTTAATCTCGATCGTTTTCATTTC
* * * * * *
5368788 TCTGACTCGTGGTTTAATCCTTG-TCATTTTTATTTT
1 T-TGACTCATGATTTAAT-CTCGATCGTTTTCATTTC
* * *
5368824 TTGACT-AGTGATTTAATC-CTGCTCATTTTTTATTTC
1 TTGACTCA-TGATTTAATCTC-GATC-GTTTTCATTTC
** *
5368860 -TGACTTGTGATTTAATCTC-AGTCGTTGTCATTTC
1 TTGACTCATGATTTAATCTCGA-TCGTTTTCATTTC
*
5368894 TTGACTCATGATTTAATCTCGATTGTTTTCATTTC
1 TTGACTCATGATTTAATCTCGATCGTTTTCATTTC
* * * * *
5368929 TTAACTCATGATTTAAACTCGATTGTATTCATTTT
1 TTGACTCATGATTTAATCTCGATCGTTTTCATTTC
5368964 TTGAC
1 TTGAC
5368969 CGTGGTTTAA
Statistics
Matches: 173, Mismatches: 27, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
33 1 0.01
34 14 0.08
35 142 0.82
36 16 0.09
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (35 bp):
TTGACTCATGATTTAATCTCGATCGTTTTCATTTC
Found at i:5369556 original size:36 final size:35
Alignment explanation
Indices: 5369491--5370223 Score: 204
Period size: 35 Copynumber: 21.0 Consensus size: 35
5369481 CTTTTGTTCC
*
5369491 CTGACTCATGATTTAATCCTGGTCATTTTCATTTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCA-TTTT
* * * * *
5369527 TTGATTTGTGATTTAATCATTGTTC-TTTTCATTTT
1 CTGACTCGTGATTTAATC-CTGGTCATTTTCATTTT
** ** *
5369562 CTGACTCGTGATTTAATTTTGGTTGTTTTCATTAT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCATTTT
* * *
5369597 CTAAGACGCG-G-TCTAATCCCTTG-CATTTTCATTTT
1 CT--GACTCGTGATTTAAT-CCTGGTCATTTTCATTTT
* * * * *
5369632 ATGACTCGTGGTTTATTCTTAGTCATTTTCATTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCATTTT
* * *
5369667 CTGACTCAT-AGTTTAAT-CTCGATCATTTGCATTTT
1 CTGACTCGTGA-TTTAATCCT-GGTCATTTTCATTTT
* * * ** *
5369702 CTGACCCATGGTTTAATCCTAATCATTTTTCTTTTT
1 CTGACTCGTGATTTAATCCTGGTCA-TTTTCATTTT
* * * ** *
5369738 TTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCATTTT
* * * *
5369773 TTGACT-GATGGTTTAAT-CTAGCTCGTTTTCATTTT
1 CTGACTCG-TGATTTAATCCT-GGTCATTTTCATTTT
* ** * *
5369808 -TCGACTCATGGCTTAAT-CAGGATTATTTTCATTTT
1 CT-GACTCGTGATTTAATCCTGG-TCATTTTCATTTT
* * * ** *
5369843 TTGACTCATGGTTTAATTATAGTCATTTTCATTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCATTTT
* * *
5369878 TTGACTCGTGGTTTAATCCCT-ATCATTTT--TTTT
1 CTGACTCGTGATTTAAT-CCTGGTCATTTTCATTTT
* * **
5369911 ATG---GGT-AGTTTAATCC-AATCATTTTCATTTT
1 CTGACTCGTGA-TTTAATCCTGGTCATTTTCATTTT
* * **
5369942 CTGACTTGTGGTTTAAT-CTAGGTTGTTTTCATTTT
1 CTGACTCGTGATTTAATCCT-GGTCATTTTCATTTT
* * * **
5369977 TTGACTCATGGTTTAATCCCCGTCATTTTCATCTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCAT-TTT
** *
5370013 C-GACTCACGATTTAATCGC-GGTAATTTTCATTTTT
1 CTGACTCGTGATTTAATC-CTGGTCATTTTCA-TTTT
* * *** **
5370048 TTGATTTACGATTTAAT-CTCGGTTGTTCTTCATTTT
1 CTGACTCGTGATTTAATCCT-GGTCATT-TTCATTTT
* * * **
5370084 TTGACTCGTGTTTTAATCAC-GATCGCTTTCA-TTT
1 CTGACTCGTGATTTAATC-CTGGTCATTTTCATTTT
* * * * ***
5370118 CTTGACTCGCGATTTAAACCCGATCGCATTCATTTT
1 C-TGACTCGTGATTTAATCCTGGTCATTTTCATTTT
* * * **
5370154 TTGACTCATGGTTTAATCCCCGTCATTTTCATCTTT
1 CTGACTCGTGATTTAATCCTGGTCATTTTCAT-TTT
*** *
5370190 C-GACTCACAATTTAATCGC-GGTAATTTTCATTTT
1 CTGACTCGTGATTTAATC-CTGGTCATTTTCATTTT
5370224 TTTGATTTAC
Statistics
Matches: 527, Mismatches: 124, Indels: 94
0.71 0.17 0.13
Matches are distributed among these distances:
29 10 0.02
30 8 0.02
31 6 0.01
33 12 0.02
34 30 0.06
35 343 0.65
36 104 0.20
37 13 0.02
38 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (35 bp):
CTGACTCGTGATTTAATCCTGGTCATTTTCATTTT
Found at i:5369659 original size:35 final size:34
Alignment explanation
Indices: 5369620--5374255 Score: 384
Period size: 35 Copynumber: 132.9 Consensus size: 34
5369610 TAATCCCTTG
* * *
5369620 CATTTTCATTTTATGACTCGTGGTTTATTCTTAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * *
5369655 CATTTTCATTTTCTGACTCATAGTTTAATCTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * * *
5369690 CATTTGCATTTTCTGACCCATGGTTTAATCCTAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* ** *
5369725 CATTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGT
1 CA-TTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
** * *
5369761 TGTTTCCATTTTTTGACTGATGGTTTAATCTAGCT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * *
5369796 CGTTTTCATTTTTCGACTCATGGCTTAATC-AGGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-G-T
* *
5369831 TATTTTCATTTTTTGACTCATGGTTTAATTATAGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
*
5369866 CATTTTCATTTTTTGACTCGTGGTTTAATCCCTA-T
1 CATTTTCATTTTTTGACTCATGGTTTAAT--CTAGT
* ** * *
5369901 CATTTT--TTTTATGGGT-A--GTTTAATCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
* **
5369930 CATTTTCATTTTCTGACTTGTGGTTTAATCTAGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-GT
** **
5369965 TGTTTTCATTTTTTGACTCATGGTTTAATCCCCGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * * * **
5370000 CATTTTCATCTTTCGACTCACGATTTAATCGCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * * *
5370035 AATTTTCATTTTTTTGATTTACGATTTAATCTCGGT
1 CATTTTCA-TTTTTTGACTCATGGTTTAATCT-AGT
** * *
5370071 TGTTCTTCATTTTTTGACTCGTGTTTTAATC-ACGAT
1 CATT-TTCATTTTTTGACTCATGGTTTAATCTA-G-T
** * ** * * **
5370107 CGCTTTCATTTCTTGACTCGCGATTTAAACCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
*** **
5370142 CGCATTCATTTTTTGACTCATGGTTTAATCCCCGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * *** **
5370177 CATTTTCATCTTTCGACTCACAATTTAATCGCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * * *
5370212 AATTTTCATTTTTTTGATTTACGATTTAATCTCGGT
1 CATTTTCA-TTTTTTGACTCATGGTTTAATCT-AGT
** * *
5370248 TGTTCTTCATTTTTTGACTCGTGTTTTAATC-ACGAT
1 CATT-TTCATTTTTTGACTCATGGTTTAATCTA-G-T
** * ** * * **
5370284 CGCTTTCATTTCTTGACTCGCGATTTAAACCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
*** * *
5370319 CGCATTCATTTTTTGACTCATGGTTTAATCCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* *
5370354 CATTTT--TCTTTT---TCAT--TTT--TTTA-T
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
* * * * * * ** *
5370378 CGTTCTCATTTTCTAACTCGTAGCCTAATTCCAGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
**
5370413 CATTTTCATTTCCTGACTCATGGTTTAATCCT-GCT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAG-T
* * *
5370448 AATTTTTC-TTTTTCTGAC-CGGTGGTTTAATCTCGAT
1 CA-TTTTCATTTTT-TGACTC-ATGGTTTAATCTAG-T
* *
5370484 CATTTCCATTTTCTGACTCATGGTTTAATCTTAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * *
5370519 -AGTTTCCATTTTCTGGCTCGTGCTTTAATCTATGT
1 CA-TTTTCATTTTTTGACTCATGGTTTAATCTA-GT
* * *
5370554 CATTTTC-TTTTTCTGACTCAAT-ATTTAATCCCACT
1 CATTTTCATTTTT-TGACTC-ATGGTTTAAT-CTAGT
** ** * * * *
5370589 TGTTTTTGTCTTCTGACTCGTGGTTTAATCCAGGTT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-G-T
** * * * ** *
5370625 GTTTTTTATTTTTTAACTCGTACTTTAATCCCAGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * * *
5370660 CATTTTTCATTTCTTGACTCATGATTCAAACT-GT
1 CA-TTTTCATTTTTTGACTCATGGTTTAATCTAGT
*** * * * * **
5370694 CGCATTCATTTTCTAACTCGT-GTTTAGTCCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
** *
5370728 CATTTTTTTTTCATTTTTTGATCATTTTCATTTTTTGACTCGTAGTT
1 CA-----TTTTCATTTTTTGA-C----TCATGGTTT-AATC-TAG-T
* * ** *
5370775 TAATCCCAATTGTTTTCATTTTCTGACTCAAT-GTTTAATCTCGAT
1 CATTTTC-ATT-TTTT--------GACTC-ATGGTTTAATCTAG-T
* *
5370820 CGTTTTTC-TTTTTCT-ACT-AGTGGTTTAATCTCGGT
1 C-ATTTTCATTTTT-TGACTCA-TGGTTTAATCT-AGT
* *
5370855 CATTTTCATTTTCTGACTCGTGGTTTAATCCTTA-T
1 CATTTTCATTTTTTGACTCATGGTTTAAT-C-TAGT
* * *
5370890 CGTTTTCATTTTTTGACT-AGTGATTTAATCCTGGT
1 CATTTTCATTTTTTGACTCA-TGGTTTAAT-CTAGT
* * *
5370925 CATTTT-TTATTTTTGACTCGTGATTTAATCTCAGT
1 CATTTTCAT-TTTTTGACTCATGGTTTAATCT-AGT
* * * * **
5370960 CGTTGTCATTTCTTGACTCATGATTTAATCCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
** * * **
5370995 TGTTTTCATTTCTTT-ACTCATGATTTAAACCCGAT
1 CATTTTCATTT-TTTGACTCATGGTTTAATCTAG-T
** * * * *
5371030 TGTATTCCTTTTTTGACTCGTGGTTTAATCCTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
*
5371065 CATTTT--TTTTTT-ACTCATGGTTTAATCTCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * * * *
5371097 CGTTTTCATTTTCTGACTCGCT-ATTTAATCTCGGT
1 CATTTTCATTTTTTGACTC-ATGGTTTAATCT-AGT
* * * * ** ** * *
5371132 CTTTTTTATTTTGTAACTTGTACTTTAATATGGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * *
5371167 CATTTTCATTTTTTAACTC-TCAGTTTAATCTCGGT
1 CATTTTCATTTTTTGACTCAT-GGTTTAATCT-AGT
* * ** * *
5371202 CATTTTCATTTTTTAACTCGTAATTTAATTTCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * * * * *
5371237 CATTTTTCCTTCTTT-A-ACATGTGATTTAGTTTCGGT
1 CA-TTTTCATTTTTTGACTCATG-G-TTTAATCT-AGT
** * * * * * *
5371273 GGTTTTGATTTTCTGACTAATGATTTATTCTCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
** * *
5371308 -AGTTTTCAAATTTTGA--CATGTGATTTAATATCGAT
1 CA-TTTTCATTTTTTGACTCATG-G-TTTAATCTAG-T
* * * * *
5371343 CTTTTTCATTTCTCTGACTCATGATTTAATAATGGTT
1 CATTTTCATTT-TTTGACTCATGGTTTAAT-CTAG-T
** * ** * *
5371380 GTTTTTCATTTTCTGACTTGTGATTTAATCTTGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* *
5371415 CGTTTTCATTTTTTGACTCATGGTTTAATCTTGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* *
5371450 CATTTTCATTTTTTGACTCGTGGTTTAATCTCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
** ** * * * *
5371485 TGTTTTTGTTTTCTGACTCGTGGTTTAATTTTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
** * * * * *
5371520 TGTTTTCATTTTTTGATTTACGATTTAATTCCCA-T
1 CATTTTCATTTTTTGACTCATGGTTTAA-T-CTAGT
* * *** * *
5371555 CGCTTTT-GTTACCTGACTCATGATTTAATCCTGGT
1 C-ATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * * *
5371590 CATTTTCATTTTTCTGATTCGTGATTTAATCCTTGT
1 CATTTTCATTTTT-TGACTCATGGTTTAAT-CTAGT
** * * * *
5371626 TGTTTTCATTTTCTTG-CTCGTGATTTAATTTTGGT
1 CATTTTCATTTT-TTGACTCATGGTTTAA-TCTAGT
** * * * ** ** * *
5371661 TGTTTTCATTGTCTAAGGCGCGATCTAATCCCTCA--
1 CATTTTCATTTTTTGACTCATGGTTTAAT--CT-AGT
* * *
5371696 CATTTTCATTTTATGACTCGTGGTTTATTCTCAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * * *
5371731 GATTTTC-TTTTTCTGACTCATAGTCTAATCTCGAT
1 CATTTTCATTTTT-TGACTCATGGTTTAATCTAG-T
*
5371766 CATTTTCATTTTTTGACCCATGGTTTAATCCTGATGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CT-A-GT
* * * ** *
5371803 --TTTTCTTTTTTTAATTGGTGGTTTAATCCTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
** * ** * *
5371836 TGTTTCCATTTTTTGACTTGTGGTTTAAGCT-GG
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
* * *
5371869 CTTGCTTTCATTTTCTGACTCATGGCTTAATC-AGGAT
1 CAT--TTTCATTTTTTGACTCATGGTTTAATCTA-G-T
* * *
5371906 TATTTTCATTTTTTGACTCCTAGTTTAATCATAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* *
5371941 CATTTTCATTTTTTGACTCGTGGTCTAATCGT-GAT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAG-T
* *
5371976 CCTTTTTCATTTTTTGACTCGTGGTTTAATCCTTA-T
1 -CATTTTCATTTTTTGACTCATGGTTTAAT-C-TAGT
** *
5372012 CATTTT--TTTTTATGGGT-A--GTTTAATCCTAAT
1 CATTTTCATTTTT-TGACTCATGGTTTAAT-CTAGT
* * **
5372043 CATTTTCATTTTCTGACTTATGGTTTAATCCCCGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
** * ** * * **
5372078 TGTTTTCATCTTACGACTCACGATTTAATCGCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* **
5372113 CATTTTCATTTTTTTGACTTACAGTTTAATC-ACGGT
1 CATTTTCA-TTTTTTGACTCATGGTTTAATCTA--GT
* *
5372149 CGTTCTTCATTTTTTGACTCGT-GTTTCAATC-ACGAT
1 CATT-TTCATTTTTTGACTCATGGTTT-AATCTA-G-T
* * * * * **
5372185 CGTTTTCATTTCTTGACTCGTGATTTAAACCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
*** * * * * *
5372220 CGCATTAATTTTCTAACTCATGGTTTAATCCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
** * **
5372255 CATTGTTC---TTTT---TCATTTTTTTATCATTCT
1 CATT-TTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * * *
5372285 CATTTTC-T-----AACTCGTAGCTTAATTCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
** *
5372314 CATTTTCATTTCCTGACTCATGGTTTAATCTTGCT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* *
5372349 TATTTTTCTTTTTTTGA-TCGATGGTTTAATCCT-GAT
1 CA-TTTTCATTTTTTGACTC-ATGGTTTAAT-CTAG-T
* *
5372385 CATTTCCATTTTCTGACTCATGGTTTAATCTTAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* ** * *
5372420 CGTTTTCATTTTTTGGTTCGTGCTTTAATCTATGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-GT
* *
5372455 CATTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACT
1 CATTTTCATTTTT-TGACTC-ATGGTTTAAT-CTAGT
** * * * * *
5372490 TGTTTTCGTCTTCTGACTCGTGGTTTAATCGAGGTT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-G-T
** * ** *
5372526 GTTTTTCATTTTTTAACTCATACTTTAATCCCAGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * * * *
5372561 CATTTTCATTTCTTGACTCATGATTCAAACTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
*** * * * * **
5372595 CGCATTCATTTTCTAACTCGTGGTTTAGTCCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
*
5372630 CA--TT--TTTTTT---TCAT--TTT--TCGA-T
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
* * * * * *
5372652 CGTTTTCATTTTCTAACTCGTGGTTTAATCCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
** * * *
5372687 CATTTTTGTTTTCTGAGTCAAT-GTTTAATCTCGAT
1 CATTTTCATTTTTTGACTC-ATGGTTTAATCTAG-T
* * * * *
5372722 CGTTTTC-TTTTTTCTAGTTAGTGGTTTAATCTCGGT
1 CATTTTCATTTTTT-GACTCA-TGGTTTAATCT-AGT
* * *
5372758 CATTTTCATTTTCTAACTCGTGGTTTAATTCTTA-T
1 CATTTTCATTTTTTGACTCATGGTTTAA-TC-TAGT
* * *
5372793 CGTTTTCATTTTTTGACT-AGTGATTGAATCCTAGT
1 CATTTTCATTTTTTGACTCA-TGGTTTAAT-CTAGT
* *
5372828 CATTTT--TTATTTCTGACTCGTGATTTAATCTCAGT
1 CATTTTCATT-TTT-TGACTCATGGTTTAATCT-AGT
* * * * *
5372863 CGTTGTCATTTCTTGACTCATGATTTAATCTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
** * * ** * * **
5372898 TGTTTTCATTTCTTAACTCGCGATTTAAACCCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
** * * *
5372933 TGTATTCATTTTTTGACTCGTGGTTTAATCCTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* *
5372968 CGTTTTCATTTTTTGACTCATGGTTTAATCTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * * ** * *
5373003 CGTTTTCATTTTCTAACTCGCGATTTAATCTCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * * * * **
5373038 CTTTTTTATTTTCTAACTCGTACTTTAATAC-AGGT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTA-GT
* * ** * *
5373073 TATTTTCATTTTTTGACTCGTAATTTAATCTCGGC
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* * ** * *
5373108 CATTTTCATTTTTTAACTCGTGACTTAATTTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * * * *
5373143 CATTTTTC-TATCTCTGA--CATGTGATTTAGTTTCGGT
1 CA-TTTTCAT-TTTTTGACTCATG-G-TTTAATCT-AGT
** * * * * *
5373179 GGTTTTGATTTTCTGACTCATGATTTATTCTCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
* *
5373214 -AGTTTTCGA-TTTTTGA--CATGTGATTTAATATCGAT
1 CA-TTTTC-ATTTTTTGACTCATG-G-TTTAATCTAG-T
* * * * *
5373249 CTTTTTCATTTCTCTGACTCATGATTCAAT-GAGGGTT
1 CATTTTCATTT-TTTGACTCATGGTTTAATCTA--G-T
** * ** * *
5373286 GTTTTTCATTTTCTGACTTGTGATTTAATCTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * *
5373321 CGTTTTCAGTTTTTGACTCACGGTTTAATCCT-GAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAG-T
* * * *
5373356 CATTTTAATTTTTTGACTCGTGATTTAATCTCGGT
1 CATTTTCATTTTTTGACTCATGGTTTAATCT-AGT
** ** * * * * *
5373391 TGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
** * * *
5373426 TGTTTTCATTTTTTGACTTACGGTTTAATTCCCA-T
1 CATTTTCATTTTTTGACTCATGGTTTAA-T-CTAGT
* * ** * *
5373461 CGCTTTT-GTTTCCTGACTCATGATTTAATCCTGGT
1 C-ATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * * *
5373496 CATTTTCATTTTTCTGATTCGTGATTTAATCCTTGT
1 CATTTTCATTTTT-TGACTCATGGTTTAAT-CTAGT
** * * * *
5373532 TGTTTTCATTTTTTGACTCGTGATTTAATTTTGGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
** * * * * ** * *
5373567 TGTTTTCATTGTCTAACACGCGGTCTAATCCCTCG-
1 CATTTTCATTTTTTGACTCATGGTTTAAT--CTAGT
* * *
5373602 CATTTTCATTTTATGACTCGTGGTTTATTCTTAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * *
5373637 CATTTTCATTTTCTGACTCATAGTTTAATCTCGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAG-T
* * * *
5373672 CATTTTCATTTTCTGACCCCTGGTTTAATCCTAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* * *
5373707 CGCTTTTC-TTTTCTTGA-TTAGTGGTTTAATCCTGGT
1 C-ATTTTCATTTT-TTGACTCA-TGGTTTAAT-CTAGT
** *
5373743 --TGTTTCTATTTTTTGACTTGTGGTTTAATCTGGCT
1 CAT-TTTC-ATTTTTTGACTCATGGTTTAATCTAG-T
* * * * *
5373778 CGTTTTCATTTTCTAACTCATTGCTTAATC-AGGAT
1 CATTTTCATTTTTTGACTCATGGTTTAATCTA-G-T
* * * * *
5373813 TATTTTCAGTTTTTAACTCGTGGTCTAATCATAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * *
5373848 CTTTTTCATTTTTTGACTCGTGGTTGAATCTGCGGC
1 CATTTTCATTTTTTGACTCATGGTTTAATCT--AGT
* *
5373884 CATTTTTATTTTTTTGACT--TGCTGTTTAATCTCGGT
1 CATTTTCA-TTTTTTGACTCATG--GTTTAATCT-AGT
* ** *
5373920 CAATCTTCATTTTTTGACTTGTGTTTTAATC-ACGAT
1 C-ATTTTCATTTTTTGACTCATGGTTTAATCTA-G-T
* * * *
5373956 CATTTTCATTTCTTGACTCGTGATTTAAACCT-GAT
1 CATTTTCATTTTTTGACTCATGGTTT-AATCTAG-T
*** * * * *
5373991 CGCATTCATTTTCTGACTCAAGGTTTAATCCCAAT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAGT
* *
5374026 CATTTT--TCTTTT---TCAT--TTT--TTTA-T
1 CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
* * * * * * * * *
5374050 CGTTCTCACTTTCTAACTCGTAGCTTAATTCCAGT
1 CATTTTCATTTTTTGACTCATGGTTTAA-TCTAGT
**
5374085 CATTTTCATTTCCTGACTCATGGTTTAATCCT-GCT
1 CATTTTCATTTTTTGACTCATGGTTTAAT-CTAG-T
* * **
5374120 CATTTTTC-TTTCTCTGAC-CGGTGGTTTAATCCCGGT
1 CA-TTTTCATTT-TTTGACTC-ATGGTTTAAT-CTAGT
*
5374156 CATTTCCATTTTTTGACTCATGGTTTAATCTTAGT
1 CATTTTCATTTTTTGACTCATGGTTTAATC-TAGT
* * * * *
5374191 CGTTTCCATTTTCT-AGCTCGTGCTTTAATCTATGT
1 CATTTTCATTTTTTGA-CTCATGGTTTAATCTA-GT
5374226 CATTTTC-TTTTTCTGACTCAAT-GTTTAATC
1 CATTTTCATTTTT-TGACTC-ATGGTTTAATC
5374256 CCAATTGTTT
Statistics
Matches: 3354, Mismatches: 904, Indels: 686
0.68 0.18 0.14
Matches are distributed among these distances:
22 2 0.00
24 14 0.00
25 2 0.00
26 17 0.01
28 11 0.00
29 34 0.01
30 33 0.01
31 36 0.01
32 28 0.01
33 72 0.02
34 183 0.05
35 2114 0.63
36 645 0.19
37 96 0.03
38 11 0.00
39 10 0.00
40 1 0.00
42 2 0.00
43 6 0.00
44 10 0.00
45 6 0.00
46 8 0.00
47 8 0.00
48 2 0.00
51 1 0.00
52 2 0.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.50
Consensus pattern (34 bp):
CATTTTCATTTTTTGACTCATGGTTTAATCTAGT
Found at i:5369755 original size:141 final size:138
Alignment explanation
Indices: 5369610--5370018 Score: 395
Period size: 141 Copynumber: 3.0 Consensus size: 138
5369600 AGACGCGGTC
*
5369610 TAATCCCTTGCATTTTCATTTTATGACTCGTGGTTTATTCTTAGTCATTTTCATTTTCTGACTCA
1 TAATCCCTTGCATTTTCATTTTATGACT-GTGGTTTAATC-TAGTCATTTTCATTTTCTGACTCA
* * * * * * *
5369675 TAGTTTAATCTCGATCATTTGCATTTTCTGACCCATGGTTTAATCCTAATCATTTTTCTTTTTTT
64 TGGTTTAATCTAGATTATTTTCATTTTTTGACTCATGGTTTAATCCTAATCA-TTTTCATTTTTT
*
5369740 GACTGGTGGTT
128 GACTCGTGGTT
* * * *
5369751 TAATCCTGGTTG--TTTCCATTTTTTGACTGATGGTTTAATCTAGCTCGTTTTCATTTT-TCGAC
1 TAATCC--CTTGCATTTTCATTTTATGACTG-TGGTTTAATCTAG-TCATTTTCATTTTCT-GAC
* ** *
5369813 TCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATTATAGTCATTTTCATTT
61 TCATGGTTTAATCTA-GATTATTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTT
5369877 TTTGACTCGTGGTT
125 TTTGACTCGTGGTT
* * * * **
5369891 TAATCCCTAT-CATTTT--TTTTATG--GGTAGTTTAATCCAATCATTTTCATTTTCTGACTTGT
1 TAATCCCT-TGCATTTTCATTTTATGACTGTGGTTTAATCTAGTCATTTTCATTTTCTGACTCAT
* * *** * *
5369951 GGTTTAATCTAGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGA
65 GGTTTAATCTAGATTATTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTTTGA
5370016 CTC
130 CTC
5370019 ACGATTTAAT
Statistics
Matches: 221, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
134 74 0.33
135 12 0.05
136 1 0.00
138 7 0.03
139 1 0.00
140 35 0.16
141 88 0.40
143 3 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (138 bp):
TAATCCCTTGCATTTTCATTTTATGACTGTGGTTTAATCTAGTCATTTTCATTTTCTGACTCATG
GTTTAATCTAGATTATTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTCATTTTTTGAC
TCGTGGTT
Found at i:5370040 original size:134 final size:134
Alignment explanation
Indices: 5369798--5370040 Score: 301
Period size: 134 Copynumber: 1.8 Consensus size: 134
5369788 ATCTAGCTCG
* *
5369798 TTTTCATTTTTCGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATTAT
1 TTTTCATTTTTCGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCAC
* * ** * * *
5369863 AGTCATTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTTTTATGGGTAGTTTAATCCA
66 AGTCATTTTCATCTTTCGACTCACGATTTAATCCCGATAATTTTTTTTATGGGTAGTTTAATCCA
5369928 ATCA
131 ATCA
** * *
5369932 TTTTCA-TTTTCTGACTTGTGGTTTAATCTAGG-TTGTTTTCATTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTC-GACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATC
* * * *
5369995 CCCGTCATTTTCATCTTTCGACTCACGATTTAATCGCGGTAATTTT
64 ACAGTCATTTTCATCTTTCGACTCACGATTTAATCCCGATAATTTT
5370041 CATTTTTTTG
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
133 5 0.06
134 82 0.91
135 3 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (134 bp):
TTTTCATTTTTCGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCAC
AGTCATTTTCATCTTTCGACTCACGATTTAATCCCGATAATTTTTTTTATGGGTAGTTTAATCCA
ATCA
Found at i:5370156 original size:177 final size:177
Alignment explanation
Indices: 5369969--5370359 Score: 755
Period size: 177 Copynumber: 2.2 Consensus size: 177
5369959 CTAGGTTGTT
*
5369969 TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGACTCACGATTTAATCGCGG
1 TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGACTCACAATTTAATCGCGG
5370034 TAATTTTCATTTTTTTGATTTACGATTTAATCTCGGTTGTTCTTCATTTTTTGACTCGTGTTTTA
66 TAATTTTCATTTTTTTGATTTACGATTTAATCTCGGTTGTTCTTCATTTTTTGACTCGTGTTTTA
5370099 ATCACGATCGCTTTCATTTCTTGACTCGCGATTTAAACCCGATCGCA
131 ATCACGATCGCTTTCATTTCTTGACTCGCGATTTAAACCCGATCGCA
5370146 TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGACTCACAATTTAATCGCGG
1 TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGACTCACAATTTAATCGCGG
5370211 TAATTTTCATTTTTTTGATTTACGATTTAATCTCGGTTGTTCTTCATTTTTTGACTCGTGTTTTA
66 TAATTTTCATTTTTTTGATTTACGATTTAATCTCGGTTGTTCTTCATTTTTTGACTCGTGTTTTA
5370276 ATCACGATCGCTTTCATTTCTTGACTCGCGATTTAAACCCGATCGCA
131 ATCACGATCGCTTTCATTTCTTGACTCGCGATTTAAACCCGATCGCA
**
5370323 TTCATTTTTTGACTCATGGTTTAATCCCAATCATTTT
1 TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTT
5370360 TCTTTTTCAT
Statistics
Matches: 211, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 211 1.00
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (177 bp):
TTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTTCGACTCACAATTTAATCGCGG
TAATTTTCATTTTTTTGATTTACGATTTAATCTCGGTTGTTCTTCATTTTTTGACTCGTGTTTTA
ATCACGATCGCTTTCATTTCTTGACTCGCGATTTAAACCCGATCGCA
Found at i:5370931 original size:105 final size:104
Alignment explanation
Indices: 5370749--5371654 Score: 426
Period size: 105 Copynumber: 8.6 Consensus size: 104
5370739 CATTTTTTGA
* * ** * * *
5370749 TCATTTTCATTTTTTGACTCGTAGTTTAATCCCAATTGTTTTCATTTTCTGACTCAATG-TTTAA
1 TCATTTTCATTTTCTGACTCGTGGTTTAAT-CTGATCGTTTTCATTTTTTGACT-AGTGATTTAA
* *
5370813 TCTCGATCGTTTTTCTTTTTCT-ACTAGTGGTTTAATCTCGG
64 TCTCGATCATTTTTCTTTTT-TGACTAGTGATTTAATCTCGG
*
5370854 TCATTTTCATTTTCTGACTCGTGGTTTAATCCTTATCGTTTTCATTTTTTGACTAGTGATTTAAT
1 TCATTTTCATTTTCTGACTCGTGGTTTAAT-CTGATCGTTTTCATTTTTTGACTAGTGATTTAAT
* * *
5370919 C-CTGGTCATTTTT-TATTTTTGACTCGTGATTTAATCTCAG
65 CTC-GATCATTTTTCT-TTTTTGACTAGTGATTTAATCTCGG
* * * * * *
5370959 TCGTTGTCA-TTTCTTGACTCATGATTTAATCCCGATTGTTTTCATTTCTTT-ACTCA-TGATTT
1 TCATTTTCATTTTC-TGACTCGTGGTTTAAT-CTGATCGTTTTCATTT-TTTGACT-AGTGATTT
* * ** * * * *
5371021 AAACCCGATTGTATTCCTTTTTTGACTCGTGGTTTAATC-CTGG
62 AATCTCGATCATTTTTCTTTTTTGACTAGTGATTTAATCTC-GG
* * * * *
5371064 TCATTTT--TTTT-TTACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTGACTCGCT-ATTTAA
1 TCATTTTCATTTTCTGACTCGTGGTTTAATCT-GATCGTTTTCATTTTTTGACTAG-TGATTTAA
* * * * * * * *
5371125 TCTCGGTCTTTTTTATTTTGTAACTTGT-ACTTTAATATGGG
64 TCTCGATCATTTTTCTTTTTTGACTAGTGA-TTTAATCTCGG
* * * * * * * *
5371166 TCATTTTCATTTTTTAACTC-TCAGTTTAATCTCGGTCATTTTCATTTTTTAACTCGTAATTTAA
1 TCATTTTCATTTTCTGACTCGT-GGTTTAATCT-GATCGTTTTCATTTTTTGACTAGTGATTTAA
* * * * * *
5371230 TTTCGGTCATTTTTCCTTCTTTAAC-ATGTGATTTAGTTTCGG
64 TCTCGATCATTTTT-CTTTTTTGACTA-GTGATTTAATCTCGG
** * ** * * * * **
5371272 TGGTTTTGATTTTCTGACTAATGATTTATTCTCAATAGTTTTCAAATTTTGAC-ATGTGATTTAA
1 TCATTTTCATTTTCTGACTCGTGGTTTAATCT-GATCGTTTTCATTTTTTGACTA-GTGATTTAA
* * *
5371336 TATCGATC-TTTTTCATTTCTCTGACTCA-TGATTTAATAAT-GG
64 TCTCGATCATTTTTC-TTT-TTTGACT-AGTGATTTAAT-CTCGG
** * * *
5371378 TTGTTTTTCATTTTCTGACTTGTGATTTAATCTTGATCGTTTTCATTTTTTGACTCA-TGGTTTA
1 -TCATTTTCATTTTCTGACTCGTGGTTTAATC-TGATCGTTTTCATTTTTTGACT-AGTGATTTA
* * *
5371442 ATCTTGATCA-TTTTCATTTTTTGACTCGTGGTTTAATCTCGG
63 ATCTCGATCATTTTTC-TTTTTTGACTAGTGATTTAATCTCGG
** ** * * * * *
5371484 TTGTTTTTGTTTTCTGACTCGTGGTTTAATTTTGGTTGTTTTCATTTTTTGATTTA-CGATTTAA
1 TCATTTTCATTTTCTGACTCGTGGTTTAA-TCTGATCGTTTTCATTTTTTGA-CTAGTGATTTAA
* ** * ***
5371548 T-TCCCATCGCTTTTGTTACCTGACTCA-TGATTTAATC-CTGG
64 TCT-CGATCATTTTTCTTTTTTGACT-AGTGATTTAATCTC-GG
* * * *
5371589 TCATTTTCATTTTTCTGATTCGTGATTTAATCCTTG-TTGTTTTCATTTTCTTG-CTCGTGATTT
1 TCATTTTCA-TTTTCTGACTCGTGGTTTAAT-C-TGATCGTTTTCATTTT-TTGACTAGTGATTT
5371652 AAT
62 AAT
5371655 TTTGGTTGTT
Statistics
Matches: 615, Mismatches: 136, Indels: 99
0.72 0.16 0.12
Matches are distributed among these distances:
101 3 0.00
102 67 0.11
103 1 0.00
104 23 0.04
105 299 0.49
106 147 0.24
107 72 0.12
108 2 0.00
109 1 0.00
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.52
Consensus pattern (104 bp):
TCATTTTCATTTTCTGACTCGTGGTTTAATCTGATCGTTTTCATTTTTTGACTAGTGATTTAATC
TCGATCATTTTTCTTTTTTGACTAGTGATTTAATCTCGG
Found at i:5371421 original size:107 final size:104
Alignment explanation
Indices: 5371258--5371527 Score: 247
Period size: 107 Copynumber: 2.6 Consensus size: 104
5371248 CTTTAACATG
* * * * * * **
5371258 TGATTTAGTTTCGGTGGTTTTGATTTTCTGACTAATGATTTATTCTCAATAGTTTTCAAATTTTG
1 TGATTTAATATCGGTTGTTTTTATTTTCTGACTAGTGATTTAATCTTGATAGTTTTCAAATTTTG
*
5371323 A-CATGTGATTTAATATCGATCTTTTTCATTTCTCTGACTCA
66 ACCATG-G-TTTAATATCGATCATTTTCATTT-TCTGACTCA
* * **
5371364 TGATTTAATAAT-GGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTTGATCGTTTTCATTTTT
1 TGATTTAAT-ATCGGTTGTTTTT-ATTTTCTGACTAGTGATTTAATCTTGATAGTTTTCAAATTT
* * * *
5371428 TGACTCATGGTTTAATCTTGATCATTTTCATTTTTTGACTCG
64 TGAC-CATGGTTTAATATCGATCATTTTCATTTTCTGACTCA
* * * * * * * *
5371470 TGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCGTGGTTTAATTTTGGTTGTTTTCA
1 TGATTTAATATCGGTTGTTTTTATTTTCTGACTAGTGATTTAATCTTGATAGTTTTCA
5371528 TTTTTTGATT
Statistics
Matches: 134, Mismatches: 25, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
105 31 0.23
106 41 0.31
107 57 0.43
108 1 0.01
109 4 0.03
ACGTcount: A:0.19, C:0.12, G:0.16, T:0.53
Consensus pattern (104 bp):
TGATTTAATATCGGTTGTTTTTATTTTCTGACTAGTGATTTAATCTTGATAGTTTTCAAATTTTG
ACCATGGTTTAATATCGATCATTTTCATTTTCTGACTCA
Found at i:5371713 original size:141 final size:141
Alignment explanation
Indices: 5371417--5371714 Score: 318
Period size: 141 Copynumber: 2.1 Consensus size: 141
5371407 ATCTTGATCG
* * * *
5371417 TTTTCATTTTTTGACTCATGGTTTAATCTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC
1 TTTTCATTTTATGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTTAATCTC
** * * * * *** *
5371482 GGTTGTTTTTGTTTTCTGACTCGTGGTTTAATTTTGGTTGTTTTCATTTTTTGATTTACGATTTA
66 GGTTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAAGGCACGATCTA
*
5371547 ATTCCCATCGC
131 ATTCCCATCAC
* *** * *
5371558 TTTT-GTTACCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTTAATC-
1 TTTTCATTTTATGACTCATGATTTAATCCTGATCATTTTCATTTTT-TGACTCGTGATTTAATCT
* *
5371621 CTTGTTGTTTTCATTTTCTTG-CTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAAGGCGCGAT
65 C-GGTTGTTTTCATTTTC-TGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAAGGCACGAT
5371685 CTAA-TCCC-TCAC
128 CTAATTCCCATCAC
5371697 ATTTTCATTTTATGACTC
1 -TTTTCATTTTATGACTC
5371715 GTGGTTTATT
Statistics
Matches: 126, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
139 3 0.02
140 43 0.34
141 78 0.62
142 2 0.02
ACGTcount: A:0.16, C:0.16, G:0.15, T:0.53
Consensus pattern (141 bp):
TTTTCATTTTATGACTCATGATTTAATCCTGATCATTTTCATTTTTTGACTCGTGATTTAATCTC
GGTTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAAGGCACGATCTA
ATTCCCATCAC
Found at i:5372432 original size:71 final size:70
Alignment explanation
Indices: 5372312--5372484 Score: 192
Period size: 71 Copynumber: 2.5 Consensus size: 70
5372302 CTTAATTCCA
* * * *
5372312 ATCATTTTCATTTCCTGACTCATGGTTTAATCTTGCTTATTTTTCTTTTTTTGATCGATGGTTTA
1 ATCATTTTCATTTTCTGACTCATGGTTTAATCTTGC-TAGTTTTCTTTTTTGGATCG-TGCTTTA
*
5372377 ATC-CTG
64 ATCTATG
* * *
5372383 ATCATTTCCATTTTCTGACTCATGGTTTAATCTTAG-TCGTTTTCATTTTTTGGTTCGTGCTTTA
1 ATCATTTTCATTTTCTGACTCATGGTTTAATCTT-GCTAGTTTTC-TTTTTTGGATCGTGCTTTA
5372447 ATCTATG
64 ATCTATG
*
5372454 -TCATTTTCTTTTTCTGACTCAAT-GTTTAATC
1 ATCATTTTCATTTTCTGACTC-ATGGTTTAATC
5372485 CCACTTGTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
70 41 0.47
71 46 0.52
72 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.53
Consensus pattern (70 bp):
ATCATTTTCATTTTCTGACTCATGGTTTAATCTTGCTAGTTTTCTTTTTTGGATCGTGCTTTAAT
CTATG
Found at i:5373348 original size:107 final size:105
Alignment explanation
Indices: 5373175--5373550 Score: 273
Period size: 106 Copynumber: 3.6 Consensus size: 105
5373165 GATTTAGTTT
* * * * * *
5373175 CGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAATAGTTTTC-GATTTTTGA--CATGTGA
1 CGGTTGTTTTTATTTTCTGACTCGTGATTTAATCTCGATAGTTTTCAG-TTTTTGACTCACG-G-
* * * *
5373237 TTTAAT-ATCGATCTTTTTCATTTCTCTGACTCATGATTCAATGA
63 TTTAATCCT-GATCATTTTAATTT-TCTGACTCATGATTCAATCA
* * *
5373281 GGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCAGTTTTTGACTCACGGTT
1 CGGTTGTTTTT-ATTTTCTGACTCGTGATTTAATCTCGATAGTTTTCAGTTTTTGACTCACGGTT
* * * *
5373346 TAATCCTGATCATTTTAATTTTTTGACTCGTGATTTAATCT
65 TAATCCTGATCATTTTAATTTTCTGACTCATGATTCAATCA
* * * * * * *
5373387 CGGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTTTTTGACTTACGGTTT
1 CGGTTGTTTTTATTTTCTGACTCGTGATTTAATCTCGATAGTTTTCAGTTTTTGACTCACGGTTT
* * * * *
5373452 AATTCC-CATCGCTTTT-GTTTCCTGACTCATGATTTAATC-
66 AA-TCCTGATC-ATTTTAATTTTCTGACTCATGATTCAATCA
** * * * * *
5373491 CTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTG-TTGTTTTCATTTTTTGACTC
1 C-GGTTGTTTTTA-TTTTCTGACTCGTGATTTAAT-CTCGATAGTTTTCAGTTTTTGACTC
5373551 GTGATTTAAT
Statistics
Matches: 221, Mismatches: 39, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
104 1 0.00
105 77 0.35
106 79 0.36
107 58 0.26
108 3 0.01
109 3 0.01
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (105 bp):
CGGTTGTTTTTATTTTCTGACTCGTGATTTAATCTCGATAGTTTTCAGTTTTTGACTCACGGTTT
AATCCTGATCATTTTAATTTTCTGACTCATGATTCAATCA
Found at i:5373619 original size:141 final size:141
Alignment explanation
Indices: 5373319--5373688 Score: 396
Period size: 141 Copynumber: 2.6 Consensus size: 141
5373309 TTTAATCTCG
* * *
5373319 ATCG-TTTTCAGTTTTTGACTCACGGTTTAATCCTGATCATTTTAATTTTT-TGACTCGTGATTT
1 ATCGCTTTTCA-TTTTTGACTCATGGTTTAATCCTGGTCATTTTCATTTTTCTGACTCGTGATTT
** * * * **
5373382 AATCTCGGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTTTTTGACTTAC
65 AATCTCGGTTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAACACAC
*
5373447 GGTTTAATTCCC
130 GGTCTAATTCCC
* * * *
5373459 ATCGCTTTT-GTTTCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTT
1 ATCGCTTTTCATTT-TTGACTCATGGTTTAATCCTGGTCATTTTCATTTTTCTGACTCGTGATTT
* * *
5373523 AATC-CTTGTTGTTTTCATTTTTTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAACACG
65 AATCTC-GGTTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAACACA
5373587 CGGTCTAA-TCCC
129 CGGTCTAATTCCC
* * * * *
5373599 -TCGCATTTTCATTTTATGACTCGTGGTTTATTCTTAGTCATTTTCA-TTTTCTGACTCAT-AGT
1 ATCGC-TTTTCATTTT-TGACTCATGGTTTAATCCTGGTCATTTTCATTTTTCTGACTCGTGA-T
* **
5373661 TTAATCTCGATCATTTTCATTTTCTGAC
63 TTAATCTCGGTTGTTTTCATTTTCTGAC
5373689 CCCTGGTTTA
Statistics
Matches: 189, Mismatches: 32, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
139 8 0.04
140 77 0.41
141 104 0.55
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.51
Consensus pattern (141 bp):
ATCGCTTTTCATTTTTGACTCATGGTTTAATCCTGGTCATTTTCATTTTTCTGACTCGTGATTTA
ATCTCGGTTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTGTCTAACACACG
GTCTAATTCCC
Found at i:5373890 original size:37 final size:36
Alignment explanation
Indices: 5372742--5380900 Score: 809
Period size: 35 Copynumber: 232.3 Consensus size: 36
5372732 TTTCTAGTTA
* *
5372742 GTGGTTTAATCTCGGTCA-TTTTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5372777 GTGGTTTAAT-TC--TTATCGTTTTCATTTTTTGACTA
1 GTGGTTTAATCTCGGTCAT--TTTTCATTTTTTGACTC
* * * * *
5372812 GTGATTGAATC-CTAGTCATTTTTTA-TTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * *
5372847 GTGATTTAATCTCAGTC-GTTGTCATTTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5372882 ATGATTTAATCTCGAT--TGTTTTCATTTCTTAACTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * *
5372917 GCGATTTAAAC-CCG--ATTGTATTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATT-T-TTCATTTTTTGACTC
*
5372952 GTGGTTTAATC-CTGGTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * *
5372987 ATGGTTTAATCTCGATC-GTTTTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5373022 GCGATTTAATCTCGGTC-TTTTTTATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5373057 GTACTTTAATAC-AGGTTA-TTTTCATTTTTTGACTC
1 GTGGTTTAAT-CTCGGTCATTTTTCATTTTTTGACTC
** * *
5373092 GTAATTTAATCTCGGCCA-TTTTCATTTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * * *
5373127 GTGACTTAATTTCGATCATTTTTC-TATCTCTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCAT-TTTTTGAC-TC
* * * ** * *
5373163 GTGATTTAGTTTCGGT-GGTTTTGATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** *
5373198 ATGATTTATTCTCAAT-AGTTTTCGA-TTTTTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTC-ATTTTTTGAC-TC
* * * *
5373233 GTGATTTAATATCGATC-TTTTTCATTTCTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTT-TTTGACTC
* * * *** ** * *
5373269 ATGATTCAATGAGGGTTGTTTTTCATTTTCTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5373305 GTGATTTAATCTCGATC-GTTTTCAGTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5373340 ACGGTTTAATC-CTGATCA-TTTTAATTTTTTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* ** * *
5373375 GTGATTTAATCTCGGTTGTTTTT-GTTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5373410 GTGATTTAATTTTGGT--TGTTTTCATTTTTTGACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** ** ** * **
5373445 ACGGTTTAAT-TCCCATCGCTTTT-GTTTCCTGACTC
1 GTGGTTTAATCT-CGGTCATTTTTCATTTTTTGACTC
* * *
5373480 ATGATTTAATC-CTGGTCA-TTTTCATTTTTCTGATTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTT-TGACTC
* *
5373516 GTGATTTAATC-CTTGT--TGTTTTCATTTTTTGACTC
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
* * * * * * *
5373551 GTGATTTAATTTTGGT--TGTTTTCATTGTCTAACAC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * *
5373586 GCGGTCTAATCCCTC-G-CA-TTTTCATTTTATGACTC
1 GTGGTTTAAT--CTCGGTCATTTTTCATTTTTTGACTC
* ** *
5373621 GTGGTTTATTCTTAGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5373656 ATAGTTTAATCTCGATCA-TTTTCATTTTCTGACCC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** ** * *
5373691 CTGGTTTAATC-CTAATCGCTTTTC-TTTTCTTGATTA
1 GTGGTTTAATCTC-GGTCATTTTTCATTTT-TTGACTC
* *
5373727 GTGGTTTAATC-CTGGT--TGTTTCTATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCATTTTTC-ATTTTTTGACTC
* * *
5373762 GTGGTTTAATCT-GGCTC-GTTTTCATTTTCTAACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* * * * * * *
5373797 ATTGCTTAATC-AGGATTA-TTTTCAGTTTTTAACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* *
5373832 GTGGTCTAATCAT-AGTC-TTTTTCATTTTTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* * *
5373867 GTGGTTGAATCTGCGGCCATTTTT-ATTTTTTTGACTT
1 GTGGTTTAATCT-CGGTCATTTTTCA-TTTTTTGACTC
* * *
5373904 GCT-GTTTAATCTCGGTCAATCTTCATTTTTTGACTT
1 G-TGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5373940 GTGTTTTAATCACGATCA-TTTTCATTTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *** *
5373975 GTGATTTAAAC-CTGATC-GCATTCATTTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
** * ** *
5374010 AAGGTTTAATCCCAATCATTTTTC--TTTTTCA-T-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * *
5374042 -T--TTT--T-T--ATC-GTTCTCACTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * **
5374069 GTAGCTTAATTC-CAGTCATT-TTCATTTCCTGACTC
1 GTGGTTTAA-TCTCGGTCATTTTTCATTTTTTGACTC
* * *
5374104 ATGGTTTAATC-CTGCTCATTTTTC-TTTCTCTGAC-C
1 GTGGTTTAATCTC-GGTCATTTTTCATTT-TTTGACTC
* *
5374139 GGTGGTTTAATCCCGGTCA-TTTCCATTTTTTGACTC
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** * * *
5374175 ATGGTTTAATCTTAGTC-GTTTCCATTTTCT-AGCTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGA-CTC
* **
5374210 GTGCTTTAATCTATGTCA-TTTTC-TTTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTT-TGACTC
* * ** * * *
5374245 AAT-GTTTAATCCCAAT--TGTTTTCGTCTTCTGACTC
1 -GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** ** *
5374280 GTGGTTTAATCGAGGTTGTTTTTCA-TTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
*** * * * *
5374315 GCACTTTAATCCCAGTC-TTTTTCATTTCTTGTCTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *** * * *
5374350 ATGATTCAAAT-T-GGTC-GCATTCATTTTCTAACAC
1 GTGGTT-TAATCTCGGTCATTTTTCATTTTTTGACTC
* * * **
5374384 ATGGTTTAGTCCCAATCATTTTTTTTCATTTTTTGA-TC
1 GTGGTTTAATCTCGGTCA---TTTTTCATTTTTTGACTC
* * * * * *
5374422 GT--TTTCATTTTCTGACTCATGGTTTAATCCCAATTGTTTTCATTTTTTGA
1 GTGGTTT-AATCTC-G-GTCAT--TTT--T--C-ATT-TTTTGA----CT-C
* *
5374472 GTGAATGTTTAATCTCGGTCGTTTTGC-TTTTTCT-AGC-C
1 GTG---GTTTAATCTCGGTCATTTTTCATTTTT-TGA-CTC
* * *
5374510 AGTTGTTTAATCTCGATCATTTTT-ATTTTTTGATTC
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5374546 GTGGTTTAATC-CTTATCA-TTTCCATTTTTTGA-TA
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* *
5374580 GTGATTTAATC-CTGGTCA-TTTT-ATATTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCAT-TTTTTGACTC
* * *
5374615 GTGATTTAATCTCAGTC----GTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * * *
5374647 ATGATTTAATCCCGAT--TGTTTTCACTTCTTAACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * *
5374682 GCGATTTAAAC-CCG--ATTGTATTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATT-T-TTCATTTTTTGACTC
* * * *
5374717 GCGATTTAATCTTGGTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5374752 ATGGTTTAATCTCAGTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5374787 -TCGATTTAATCTCGATC-TTTTTTATTTTTTAACTC
1 GT-GGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5374822 GTAGTTTAAT-ACGAGTCA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCG-GTCATTTTTCATTTTTTGACTC
*** * *
5374857 ACAGTTTAATC-CTGATCATTTTT-ATTTTTTAACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * ** * *
5374892 GCGATTTAATTTTGGTCATTACTCCTTCTTTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * ** * *
5374928 GTGATTTAGTTTCGGT-GGTTTTGATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** * *
5374963 ATGATTTATTCTCAAT-AGTTTTCCA-TTTTTAACAT-
1 GTGGTTTAATCTCGGTCA-TTTTTCATTTTTTGAC-TC
* * * * *
5374998 GTGATTTAATATTGATCA-TTTTCATTTCTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTT-TTTGACTC
* * ** ** * *
5375034 ATGATTTAATGGCGGTTGTTTTTCATTTTCTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5375070 GTGATTTAATCTCGATC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * *
5375105 ACGATTTAATC-CTGATCA-TTTTAATTTTTTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * **
5375140 GTAGTTTAATCTCGATTGTTTTT-A-TTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5375174 GTGGTTTAAT-TTTGT-TTGTTTTCATTTTTTGACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** ** ** * ***
5375209 ACGGTTTAAT-TCCATCGCTTTT-GTTCCCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5375243 ATGATTTAATC-CTGGTCA-TTTTCATTTTTTTGATTC
1 GTGGTTTAATCTC-GGTCATTTTTCA-TTTTTTGACTC
* * ** * * *
5375279 GTGATTTAATC-CTTGTTGTTTTT-ATTTTCTAACAC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * * * **
5375314 GTGATTTAATTTTGGT--TGTTTTCATTATCTAAAAC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** **** *
5375349 CCGACCCAATCCCTC-G-CATTTTT-ATTTTTTGATTC
1 GTGGTTTAAT--CTCGGTCATTTTTCATTTTTTGACTC
* * * *
5375384 GTGATTTATTCTCAGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * *
5375419 ATAGTTTAATCTTGATGA-TTTTCATTTTCTGACCC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * *
5375454 ATGATTTAATCTTGATCGTTTTTCTTTTTTTGACTA
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5375490 GTGGTTTAATC-CTGGT--TGTTTCCATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
*
5375525 GTGGTTTAATCT-GGCTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* * * *
5375560 ATGGCTTAATC-AGGATTA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* * * *
5375595 ATAGTTTAATCAT-AGTCA-TTTTCATTTCTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* *
5375630 GTGGTCTAATCGT-GGTCTTTTTTCATTTTTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* * ** *
5375666 GTGTTTTAATC-C-CT-ATCATT--TTTTTTGA-TAG
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACT-C
* * * ** * * *
5375697 GTAGTTCAATCCCAATC-GTTTTCATTTTCTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5375732 ATGGTTTAATCTAGAT--TGTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** * * * *
5375767 ACGGTTTAATCCCCGTCA-TTTTCATCTTTCGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** *
5375802 ACGGTTTAATCGT-GGTCA-TTTTCATTTTTTTGACTT
1 GTGGTTTAATC-TCGGTCATTTTTCA-TTTTTTGACTC
** * * * *
5375838 GCAGTTTAATCTCGATCGTTCTTCATTTTTTTCACTC
1 GTGGTTTAATCTCGGTCATTTTTCA-TTTTTTGACTC
* * * *
5375875 GTGTTTTAATCAT-GATC-GTTTTCATTTCTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* * * *** *
5375910 GTGATTTAAACTCGATC-GCATTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** * * * *
5375945 ATGGTTTAATCTTAGTC-GTTTCCATTTTCTGGCTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** *
5375980 GTGCTTTAATCTATGTCA-TTTTCTTTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** ** * * *
5376015 AAT-GTTTAATCCCACTTGTTTTT-GTGTTCTGACTC
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** *
5376050 GTGGTTTAATC-CAGGTTGTTTTTCA-TTTTTAACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
** * * *
5376085 GTACTTTAATCCCAGTCA-TTTTCATTTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *** *
5376120 ATGATTCAAACT-GGTC-GCATTCATTTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5376154 GTGGTTTAGTCCCGATCATTTTTTTTCATTTTTTGA-TC
1 GTGGTTTAATCTCGGTCA---TTTTTCATTTTTTGACTC
* * * * *
5376192 GT--TTTCATTTTTTGACTCGTGGTTTAATCCCAATCGTTTTTATTTTCTGACTC
1 GTGGTTT-A-ATCTCG-GTCAT--TTT--T--C-A----TTTT----T-TGACTC
* * * *
5376245 AAT-GTTTAATCTCGAT--TGTTTTCCTTTTTCT-AGCTA
1 -GTGGTTTAATCTCGGTCAT-TTTTCATTTTT-TGA-CTC
*
5376281 GTGGTTTAATCTCGGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** * * *
5376316 GTGGCTTAATC-C-TTACCGTTTCCATTTTTT-TCTA
1 GTGGTTTAATCTCGGT-CATTTTTCATTTTTTGACTC
* * *
5376350 GTGATTTAATC-CTGGTCATTTTTTA-TTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * * * *
5376385 ATGATTTAGTCTCAGTC-GTTGTCA-TTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * *
5376419 ATGATTTAATCCCGAT--TGTTTTCATTTCTTAACTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * * ** *
5376454 GTGATTTAAACCCGAT-GGTATTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
**** * * *
5376489 ACAATTTAATC-CTGGTCAATTTT-ATTTTTTTAACTT
1 GTGGTTTAATCTC-GGTCATTTTTCA-TTTTTTGACTC
* * * * * *
5376525 ATGGTTTAATCTCGATC-GTATTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5376560 GTGGTTTAATCTCGGTC-TTTTTTATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * **
5376595 GTAGTTTAATAC-GGGTTA-TTTTCATTTTTTCTCTC
1 GTGGTTTAAT-CTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5376630 ATAGTTTAATCCCAGTCA-TTTTCATTTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * *
5376665 ATGATTTAATTTCGATCATTTTTCGTTCTCTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * * ** *
5376701 ATGATTTAGTTTCGGT-GGTTTTGATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** * *
5376736 ATGATTTATTCTCAAT-AGTTTTCAATTTTTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * * *
5376771 GTGATTTAATATCGATCA-TTTTCATTTCTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTT-TTTGACTC
* * ** ** * *
5376807 ATGATTTAATGACGGTTGTTTTTCATTTTTTGGCTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5376843 GTGATTTAATCTCGATC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5376878 ACGGTTTAATC-CTGATCA-TTTTCATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
** * ** ** * ***
5376913 ACGGTTT-ATTTCCCATCGCTTTT-GTTCCCTGACTC
1 GTGGTTTAATCT-CGGTCATTTTTCATTTTTTGACTC
* * *
5376948 ATGATTTAATC-CTGGTCA-TTTTCATTTTTTTGATTC
1 GTGGTTTAATCTC-GGTCATTTTTCA-TTTTTTGACTC
* ** *
5376984 GTGATTTAATCTTTGT--TGTTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * * * * * **
5377019 GTGATTTAATTTTGGT--TGTTTTCGTTATCTAAGAC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * *
5377054 GTGGTCTAATCCCTC-G-CA-TTTTCATTTTATAACTT
1 GTGGTTTAAT--CTCGGTCATTTTTCATTTTTTGACTC
* * * *
5377089 ATGGTTTATTCTCAGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** *
5377124 ATAGTTTAATCTCTATCA-TTTTCATTTTTTGACAC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** * * *
5377159 ATGGTTTAATC-CTAATCGTTTTTCTTTTTTTGACTG
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * *
5377195 GTGGTTTAATC-CTGGT--TGTTTCCATTTTTTGCCTT
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
* *
5377230 GTGGTTTAATCT-GGCTC-GTTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* * * *
5377265 ATGGCTTAATC-AGGATTA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* *
5377300 CTGGTTTAATCAT-AGTCA-TTTTCATTTTTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* *
5377335 GTGGTCTAATCGT-GGTCCTTTTTCATTTTTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
** * *
5377371 GTGGTTTAATC-CTTATCATTTTTCTTTTTTTGA-TGG
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACT-C
* * ** * * *
5377407 GTAGTTTAATCCCAATC-GTTTTCATTTTCTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5377442 GTGGTTTAATCCCTAGTCA-TTTTCA-TTTTTGACTT
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
*
5377477 ATGGTTTAATCT-GAGT--TGTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCG-GTCAT-TTTTCATTTTTTGACTC
* * ** * * *
5377512 ATGGTTTAATCCCCATCGTTTTT-ATCTTTCGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * ** *
5377547 AAGGTTTAATCGCAGTCATTTTTGTTTTTTTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5377583 GCT-ATTTAATCTCGATCGTTCTTCATTTTTTGACTC
1 G-TGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * *
5377619 ATGTTTTAATCACGATC-GTTTTCATTTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * * * *
5377654 GTAATTTAAACCCGATCGTATTT-ATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** *
5377689 ATGGTTTAATCCCAATCATTTTTC--TTTTTCA-T-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5377721 -T--TTT--T-T--ATC-GTTCTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * ** *
5377748 GTAGCTTAATTC-CAGTTATTTT-CATTTCCTAACTC
1 GTGGTTTAA-TCTCGGTCATTTTTCATTTTTTGACTC
* *
5377783 ATGGTTTTAATCCTAC--TCATTTTT--TTTTCTGA-TC
1 GTGG-TTTAAT-CT-CGGTCATTTTTCATTTTTTGACTC
* * * *
5377817 GGTGGTTTAATC-CTAGT-AATTTCCATTTTTTGGCTC
1 -GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* ** * * *
5377853 ATGGTTTAATCTTAGTC-GTTTCCATTTTTTGGCTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** **
5377888 GTACTTTAATCTATGTCA-TTTTC-TTTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTT-TGACTC
* ** * * * *
5377923 AAT-GTTTAATC-C-AACTTCTTTTCGTCTTCTGACTC
1 -GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * ** *
5377958 GTGGTTTAATAAT-TGTTGTTTTTCATTTTTTAACTC
1 GTGGTTTAAT-CTCGGTCATTTTTCATTTTTTGACTC
** * * *
5377994 GTACTTTAATCCCAGTCA-TTTTCATTTCTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * * *
5378029 ATGATTCAAACT-GGTC-GTATTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5378063 GAGGTTTAGTCCCGATCATTTTT--TTTTTT-A---
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** *
5378093 ----ATT--T-TCGATC-GTTTTCACCTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** * *
5378121 GTGGTTTAATCCCAATCA-TTTTCGTTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5378156 AAT-GTTTAATCTCGATC-GTTTTCCTTTTTCT-AGC-C
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTT-TGA-CTC
*
5378191 AGTGGTTTAATCTCGATCATTTTT--TTTTTCTGACTC
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTT-TGACTC
* *
5378227 GTGGTTTAATC-C--TTATCGTTTTCATTTTTTGACTA
1 GTGGTTTAATCTCGGTCAT--TTTTCATTTTTTGACTC
* * *
5378262 GTGATTTAATC-CTGGTCATTTTTTA-TTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * * * * * * *
5378297 ATGATCTAATCTCAGTC-GTTGTCATTTCTCGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * * *
5378332 ATGATTTAATCCCGATTA-TTTTCATTTCTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5378367 ATGATTTAAAC-C--TGATTGTATTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATT-T-TTCATTTTTTGACTC
* *
5378402 GTGGTTTAATCTTGGTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5378437 ATGGTTTAATCTCGATC-GTTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * * *
5378472 GCAGTTTAATCTCGATC-TTTTTTATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5378507 GTAGTTTAATAC-AGGTCA-TTTTCATTTTTTGACTC
1 GTGGTTTAAT-CTCGGTCATTTTTCATTTTTTGACTC
*** * * * *
5378542 ACAGTTTAATCCCAGTCA-CTTTCATTTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5378577 GTGATTTAATTTCAGTCATTTTTCATTCTCTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * * ** *
5378613 ATGATTTAGTTTCGGT-GGTTTTGATTTTCTT-ACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTT-TTGACTC
* * * ** *
5378648 ATGATTTATTCTCAAT-AGTTTTTGA-TTTTTGACAT-
1 GTGGTTTAATCTCGGTCA-TTTTTCATTTTTTGAC-TC
* * * *
5378683 GTGATTTAATATCGATCA-TTTTCATTTCTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTT-TTTGACTC
* * * *** ** * * *
5378719 ATGATTGAAAGACGGTTGTTTTTCATTTTCTAACTT
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5378755 GTGATTTAATCTCGATC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5378790 ATTGTTTAATC-CTGATCATTTTT-ATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* ** *
5378825 GTGGTTTAATCTTGGTTGTTTTT-GTTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *
5378860 GTGGTTTAATTTTGGT--TGTTTTCATTTTTTGACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** ** * ****
5378895 ACGGTTTAAT-TCCCATCATTTTT-GTTCCCCGACT-
1 GTGGTTTAATCT-CGGTCATTTTTCATTTTTTGACTC
* *
5378929 GATGATTTAATC-CAGGTCA-TTTTCATTTTTCTGATTC
1 G-TGGTTTAATCTC-GGTCATTTTTCATTTTT-TGACTC
* * *
5378966 GTGATTTAATC-CTTGT--TGTTTTCATTTTCTGACTC
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
* * ** * * * * **
5379001 GTGATTTAATTTTAGT--TGTTCTCATTATCTAAGAC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * *
5379036 GCGGTCTAATCCCTC-GT-A-TTTTCATGTTATGACTC
1 GTGGTTTAAT--CTCGGTCATTTTTCATTTTTTGACTC
* * *
5379071 GTGGTTTATTCTCAGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * *** *
5379106 ATAGTTTAATCTTAATCA-TTTTCATTTTTTGGC-C
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5379140 TATGGTTTAATC-CTGATCGTTTTTCTTTTTTTGACTG
1 -GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* *
5379177 GTGGTTTAATC-CTGGT--TGTTTCCATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
* *
5379212 GTGGTTTAATCT-GGCTC-GTTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
** * * *
5379247 AAGGCTTAATC-AGGATTA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
** * **
5379282 ACGGTTTAATC-C--TCATCGTTTTCATCTTCCGACTC
1 GTGGTTTAATCTCGGTCAT--TTTTCATTTTTTGACTC
** * * *
5379317 ACGGTTTAATCACGATCA-TTTTCATTTTTTTGACTT
1 GTGGTTTAATCTCGGTCATTTTTCA-TTTTTTGACTC
** *
5379353 GCAGTTTAATCTCGGTCATTCTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** * *
5379389 GTGTTTTAATCACAATC-GTTTTCATTTCTTGACTTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * *** * *
5379425 -TGATTTAAAC-CTGATC-GCATTCATCTTCTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * ** *
5379459 ATGGTTTAATCCCAATCATTTTTC--TTTTTCA-T-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5379491 -T--TTT--T-T--ATC-GTTCTCATTTTCTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** *
5379518 GTAGCTTAATTC-CAGTCATT-TTCATTTCCTAACTC
1 GTGGTTTAA-TCTCGGTCATTTTTCATTTTTTGACTC
* * *
5379553 ATGGTTTAATC-CTGCTCATTTTTC-TTTCTCTGA-TC
1 GTGGTTTAATCTC-GGTCATTTTTCATTT-TTTGACTC
* * * *
5379588 GATGGTTTAATCCCGATCA-TTTCCATTTTCTGACTC
1 G-TGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* ** * * *
5379624 ATGGTTTAATCTTAGT--TGTTTCCAATTTTTGGCTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * *** *
5379659 GTGCTTTGATCGATGTCATTTTT--TTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** ** * * * *
5379693 AAT-GTTTAATCCCACTTGTTTTT-GTCTTCTAACTC
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * ** *
5379728 ATGGTTTAATCCCAATCA-TTTTCGTTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * * *
5379763 AAT-GTTTAATCTTGATC-GTTTTCCTTTTTCT-AGCTA
1 -GTGGTTTAATCTCGGTCATTTTTCATTTTT-TGA-CTC
* *
5379799 GTGGTTTAATCTCAGTCA-TTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5379834 GTGGTTTAATC-C--TTATCGTTTTCATTTTTTGACTA
1 GTGGTTTAATCTCGGTCAT--TTTTCATTTTTTGACTC
* * *
5379869 GTGATTTAATCCTAC--TCATCTTTT-A-TTTCTGACTT
1 GTGGTTTAAT-CT-CGGTCAT-TTTTCATTTTTTGACTC
* * * * * *
5379904 GTGATTTAATCTCAGTC-GTTGTCATTTCTCGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5379939 ATGATTTAAT-TC--TGATTGTTTTCATTTCTTAACTC
1 GTGGTTTAATCTCGGTCA-T-TTTTCATTTTTTGACTC
* * * * *
5379974 GCGATTTAAAC-CCG--ATTGTATTCATTTTTTGATTC
1 GTGGTTTAATCTCGGTCATT-T-TTCATTTTTTGACTC
*
5380009 GTGGTTTAATC-CTGGTC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* * *
5380044 ATGGTTTAATCTCGAT--TGTTTTCATTTTCTGACTC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * * *
5380079 -TCGATTTAATCTCGATCTTTTTTTATTTTTTAACTC
1 GT-GGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5380115 GTGATTTAATTTCGGTCATTTTTCGTTCTTTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGAC-TC
* * * ** * *
5380151 GTGATTTAGTTTCGGT-GGTTTTGATTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * * *
5380186 ATGATTTATTCTCAGT-AGTTTTCGA-TTTTTGACAT-
1 GTGGTTTAATCTCGGTCATTTTTC-ATTTTTTGAC-TC
* * * * *
5380221 GTGATTTAATATCGATCA-TTTTCATTCTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * ** * * *
5380256 ATGATTTAATGAT-GGTTGTTTTTCATTTTCTAACTT
1 GTGGTTTAAT-CTCGGTCATTTTTCATTTTTTGACTC
* * * *
5380292 TTGATTTAATCTCGATC-GTTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * * * *
5380327 ACGTTTTAATCTTGATCA-TTTTCATTTTTTAACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
** * *
5380362 GTGGTTTAATCTCGGTTGTTTCTC-TTTTCTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5380397 GTGGTTTAATTTTGGT--TGTTTTCATTTTGTGACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
** ** ** * ****
5380432 ACGGTTTAAT-TCCCATCGCTTTT-GTTCCCCGACTC
1 GTGGTTTAATCT-CGGTCATTTTTCATTTTTTGACTC
* * * *
5380467 ATGATTTAATCTTGGTCA-TTTTCATTTTTTTGATTC
1 GTGGTTTAATCTCGGTCATTTTTCA-TTTTTTGACTC
* * *
5380503 GTGATTTAATC-CTTGT--TGTTTTCATTTTCTGACTC
1 GTGGTTTAATCTC-GGTCAT-TTTTCATTTTTTGACTC
* * ** * * * **
5380538 GTGATTTAATTTTAGT--TGTTTTCATTATCTAAGAC
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * ** *
5380573 GCGGTCTAATCCCTCTCA-TTTTCATTTTATGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* *
5380608 GTGGTTTATTCTCAGTCA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5380643 ATAGTTTAATCTCGATCA-TTTTCATTTTTTGACAC
1 GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
* * * *
5380678 ATGGTTTAATC-CTGATCATTTTTCTTTTTTTGACTG
1 GTGGTTTAATCTC-GGTCATTTTTCATTTTTTGACTC
* *
5380714 GTGGTTTAATC-CTGGT--TGTTTCTATTTTTTGACTT
1 GTGGTTTAATCTC-GGTCATTTTTC-ATTTTTTGACTC
* * * *
5380749 GTTGTTTAATCT-GG-CTTGTTTTCATTTTCTGACTT
1 GTGGTTTAATCTCGGTCAT-TTTTCATTTTTTGACTC
* * * *
5380784 ATGGCTTAATC-AGGATTA-TTTTCATTTTTTGACTC
1 GTGGTTTAATCTCGG-TCATTTTTCATTTTTTGACTC
* * *
5380819 GTTGTTTAATCAT-AGTCATTTTT-ATTTTTTGACTT
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
* * *
5380854 ATGGTCTAATCGT-GGTCTTTTTTCATTTTTTGACTC
1 GTGGTTTAATC-TCGGTCATTTTTCATTTTTTGACTC
5380890 GTGGTTTAATC
1 GTGGTTTAATC
5380901 CCAATCATTT
Statistics
Matches: 5931, Mismatches: 1605, Indels: 1175
0.68 0.18 0.13
Matches are distributed among these distances:
22 4 0.00
23 17 0.00
24 13 0.00
25 16 0.00
26 5 0.00
27 3 0.00
28 3 0.00
29 9 0.00
30 7 0.00
31 19 0.00
32 38 0.01
33 55 0.01
34 419 0.07
35 3850 0.65
36 1210 0.20
37 136 0.02
38 31 0.01
39 28 0.00
40 6 0.00
42 2 0.00
43 8 0.00
44 8 0.00
45 1 0.00
46 1 0.00
47 5 0.00
49 5 0.00
50 6 0.00
51 1 0.00
52 7 0.00
53 6 0.00
54 6 0.00
55 6 0.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.50
Consensus pattern (36 bp):
GTGGTTTAATCTCGGTCATTTTTCATTTTTTGACTC
Found at i:5374137 original size:36 final size:36
Alignment explanation
Indices: 5374084--5374185 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 36
5374074 TTAATTCCAG
*
5374084 TCATTTTCATTTC-CTGACTCATGGTTTAATCCTGC
1 TCATTTTCATTTCTCTGACTCATGGTTTAATCCCGC
* *
5374119 TCATTTTTC-TTTCTCTGAC-CGGTGGTTTAATCCCGG
1 TCA-TTTTCATTTCTCTGACTC-ATGGTTTAATCCCGC
* *
5374155 TCATTTCCATTT-TTTGACTCATGGTTTAATC
1 TCATTTTCATTTCTCTGACTCATGGTTTAATC
5374186 TTAGTCGTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
35 27 0.48
36 29 0.52
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.47
Consensus pattern (36 bp):
TCATTTTCATTTCTCTGACTCATGGTTTAATCCCGC
Found at i:5375031 original size:71 final size:71
Alignment explanation
Indices: 5374946--5375115 Score: 189
Period size: 71 Copynumber: 2.4 Consensus size: 71
5374936 GTTTCGGTGG
* * *
5374946 TTTTGATTTTCTGACTCATGATTTATTCTCAATAGTTTTCCATTTT-TAACATGTGATTTAATAT
1 TTTTCATTTTCTGACTCATGATTTAATCGCAATAGTTTTCCATTTTCTAACATGTGATTTAATAT
*
5375010 TGATCA
66 CGATCA
* ** * * * * *
5375016 TTTTCATTTCTCTGACTCATGATTTAATGGCGGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TTTTCATTT-TCTGACTCATGATTTAATCGCAATAGTTTTCCATTTTCTAACATGTGATTTAATA
*
5375081 TCGATCG
65 TCGATCA
* *
5375088 TTTTCATTTTTTGACTCACGATTTAATC
1 TTTTCATTTTCTGACTCATGATTTAATC
5375116 CTGATCATTT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
70 8 0.10
71 46 0.56
72 28 0.34
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (71 bp):
TTTTCATTTTCTGACTCATGATTTAATCGCAATAGTTTTCCATTTTCTAACATGTGATTTAATAT
CGATCA
Found at i:5375204 original size:104 final size:107
Alignment explanation
Indices: 5374946--5375218 Score: 261
Period size: 107 Copynumber: 2.6 Consensus size: 107
5374936 GTTTCGGTGG
* * * * * * **
5374946 TTTTGATTTTCTGACTCATGATTTATTCTCAATAGTTTTCCA-TTTTTAACAT-GTGATTTAATA
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTT-CATTTTTTGAC-TCACGATTTAATA
* * * *
5375009 TTGATCATTTTCATTTCTCTGACTCATGATTTAATGGCGGTTGT
64 CTGATCATTTTAATTTCTCTGACTCATGATTTAATCGCGATTGT
* *
5375053 TTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATCCT
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATACT
* * *
5375118 GATCATTTTAATTT-TTTGACTCGT-AGTTTAATCTCGATTGT
66 GATCATTTTAATTTCTCTGACTCATGA-TTTAATCGCGATTGT
* * * * * * *
5375159 TTTT-ATTTT-TGACTCGTGGTTTAATTTTGTTTGTTTTCATTTTTTGACTTACGGTTTAAT
1 TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAAT
5375219 TCCATCGCTT
Statistics
Matches: 138, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
104 43 0.31
105 6 0.04
106 27 0.20
107 62 0.45
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (107 bp):
TTTTCATTTTCTGACTCGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGATTTAATACT
GATCATTTTAATTTCTCTGACTCATGATTTAATCGCGATTGT
Found at i:5376198 original size:17 final size:18
Alignment explanation
Indices: 5376176--5376211 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
5376166 CGATCATTTT
5376176 TTTTCATTTTTTGA-TCG
1 TTTTCATTTTTTGACTCG
5376193 TTTTCATTTTTTGACTCG
1 TTTTCATTTTTTGACTCG
5376211 T
1 T
5376212 GGTTTAATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.64
Consensus pattern (18 bp):
TTTTCATTTTTTGACTCG
Found at i:5376811 original size:106 final size:107
Alignment explanation
Indices: 5376666--5376875 Score: 246
Period size: 107 Copynumber: 2.0 Consensus size: 107
5376656 TTTTAACTCA
* * * ** *
5376666 TGATTTAATTTCGATCATTTTTCGTTCTCTGACATATGATTTAGTTTCGG-TGGTTTTGATTTTT
1 TGATTTAATATCGATCATTTTTCGTTCTCTAACATATGATTTAATGACGGTTGGTTTTCATTTTT
*
5376730 TGACTCATGATTTATTCTCAATAGTTTTCAATTTTTGACATG
66 TGACTCATGATTTAATCTCAATAGTTTTCAATTTTTGACATG
* *
5376772 TGATTTAATATCGATCA-TTTTCATTTCTCTAAC-TCATGATTTAATGACGGTTGTTTTTCATTT
1 TGATTTAATATCGATCATTTTTC-GTTCTCTAACAT-ATGATTTAATGACGGTTGGTTTTCATTT
* ** * * *
5376835 TTTGGCTTGTGATTTAATCTCGATCGTTTTCATTTTTTGAC
64 TTTGACTCATGATTTAATCTCAATAGTTTTCAATTTTTGAC
5376876 TCACGGTTTA
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
105 6 0.07
106 36 0.42
107 44 0.51
ACGTcount: A:0.20, C:0.13, G:0.14, T:0.52
Consensus pattern (107 bp):
TGATTTAATATCGATCATTTTTCGTTCTCTAACATATGATTTAATGACGGTTGGTTTTCATTTTT
TGACTCATGATTTAATCTCAATAGTTTTCAATTTTTGACATG
Found at i:5377221 original size:141 final size:140
Alignment explanation
Indices: 5377076--5377350 Score: 327
Period size: 141 Copynumber: 2.0 Consensus size: 140
5377066 CTCGCATTTT
* * * *
5377076 CATTTTATAACTTATGGTTTATTCTCAG-TCATTTTCATTTTCTGACTCATAGTTTAATCTCTAT
1 CATTTTATAACTTATGGTTTAATCT-AGCTCATTTTCATTTTCTGACTCATAGCTTAATCACGAT
* * * * *
5377140 CATTTTCATTTTTTGACACATGGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAAT
65 CATTTTCATTTTTTGACACATGGTTTAATCATAATC-ATTTTCATTTTTTGACTCGTGGTCTAAT
5377205 CCTGGTTGTTTC
129 CCTGGTTGTTTC
* ** * * * * * *
5377217 CATTTTTTGCCTTGTGGTTTAATCTGGCTCGTTTTCATTTTCTGACTCATGGCTTAATCAGGATT
1 CATTTTATAACTTATGGTTTAATCTAGCTCATTTTCATTTTCTGACTCATAGCTTAATCACGATC
* * * *
5377282 ATTTTCATTTTTTGACTCCTGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCTAATCG
66 ATTTTCATTTTTTGACACATGGTTTAATCATAATCATTTTCATTTTTTGACTCGTGGTCTAATCC
5377347 TGGT
131 TGGT
5377351 CCTTTTTCAT
Statistics
Matches: 111, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
140 30 0.27
141 81 0.73
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.51
Consensus pattern (140 bp):
CATTTTATAACTTATGGTTTAATCTAGCTCATTTTCATTTTCTGACTCATAGCTTAATCACGATC
ATTTTCATTTTTTGACACATGGTTTAATCATAATCATTTTCATTTTTTGACTCGTGGTCTAATCC
TGGTTGTTTC
Found at i:5377362 original size:141 final size:141
Alignment explanation
Indices: 5377107--5377522 Score: 360
Period size: 141 Copynumber: 3.0 Consensus size: 141
5377097 TTCTCAGTCA
* * * *
5377107 TTTTCATTTTCTGACTCATAGTTTAATCTCTATCATTTTCATTTTTTGACACATGGTTTAATCCT
1 TTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTTTGACACATGGTTTAATCAT
* * * * * *
5377172 AATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGCCTTGTGGTTT
66 AATCGATTTTCATTTTTTGACTCGTGGTCTAATCCTGGTTGTTTCCATTTTTTGACTCGTGGTTT
5377237 AATCTGGCTCG
131 AATCTGGCTCG
* * * * *
5377248 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCCTGGTTTAATCAT
1 TTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTTTGACACATGGTTTAATCAT
* * *
5377313 AGTC-ATTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCT-TTTTCATTTTTTGACTCGTGGT
66 AATCGATTTTCATTTTTTGACTCGTGGTCTAATCCTGGT--TGTTTCCATTTTTTGACTCGTGGT
** *
5377376 TTAATCCT-TATCAT
129 TTAAT-CTGGCTC-G
* * ** * * * * * ***
5377390 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCCAATCGTTTTCATTTTCTGACTTGTGGTTTAATCC
1 TTTTCATTTTCTGACT-CATAGCTTAATCACGATCATTTTCATTTTTTGACACATGGTTTAAT-C
* * ** * * *
5377454 CTAGTC-ATTTTCA-TTTTTGACTTATGGTTTAAT-CTGAGTTGTTTTCATTTTTTGACTCATGG
64 ATAATCGATTTTCATTTTTTGACTCGTGGTCTAATCCTG-GTTGTTTCCATTTTTTGACTCGTGG
5377516 TTTAATC
128 TTTAATC
5377523 CCCATCGTTT
Statistics
Matches: 226, Mismatches: 41, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
140 31 0.14
141 114 0.50
142 68 0.30
143 13 0.06
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (141 bp):
TTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTTTGACACATGGTTTAATCAT
AATCGATTTTCATTTTTTGACTCGTGGTCTAATCCTGGTTGTTTCCATTTTTTGACTCGTGGTTT
AATCTGGCTCG
Found at i:5377578 original size:212 final size:212
Alignment explanation
Indices: 5377071--5377581 Score: 527
Period size: 212 Copynumber: 2.4 Consensus size: 212
5377061 AATCCCTCGC
* * * * * *
5377071 ATTTTCATTTTATAACTTATGGTTTATTCTCAGTCATTTTCAT-TTTCTGACTCATA-GTTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCATTTTCATCTTTC-GACTCA-AGGTCTAAT
* * *
5377134 CTCTA-TCA-TTTTCATTTTTTGACACATGGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGT
64 CGC-AGTCATTTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTTCTTTTTTTGACTGGT
* *** * * * * *
5377197 GGTTTAATCCTGGTTGTTTCCATTTTTTGCCTTGTGGTTTAATCTGGCTCGTTTTCATTTTCTGA
128 AGTTTAATCCCAATCGTTTCCATTTTCTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTCTGA
5377262 CTCATGGCTTAATCAGGATT
193 CTCATGGCTTAATCAGGATT
* * * * **
5377282 ATTTTCATTTTTTGACTCCTGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCTAATCG
1 ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCATTTTCATCTTTCGACTCAAGGTCTAATCG
** * * *
5377347 TGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCTTATCATTTTTCTTTTTTTGA-TGGGTAG
66 CAGTCATTTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTTCTTTTTTTGACT-GGTAG
*
5377411 TTTAATCCCAATCGTTTTCATTTTCTGACTTGTGGTTTAATCCCTAG-TCATTTTCATTTT-TGA
130 TTTAATCCCAATCGTTTCCATTTTCTGACTTGTGGTTTAAT--CTAGCTCATTTTCATTTTCTGA
* * *
5377474 CTTATGGTTTAATC-TGAGTT
193 CTCATGGCTTAATCAGGA-TT
* * * * *
5377494 GTTTTCATTTTTTGACTCATGGTTTAATCCCCA-TCGTTTTTATCTTTCGACTCAAGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAAT-CACAGTCATTTTCATCTTTCGACTCAAGGTCTAATC
**
5377558 GCAGTCATTTTTGTTTTTTTGACT
65 GCAGTCATTTTTCATTTTTTGACT
5377582 TGCTATTTAA
Statistics
Matches: 243, Mismatches: 48, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
211 53 0.22
212 173 0.71
213 14 0.06
214 3 0.01
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (212 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCATTTTCATCTTTCGACTCAAGGTCTAATCG
CAGTCATTTTTCATTTTTTGACTCATGGTTTAATCCTAATCATTTTTCTTTTTTTGACTGGTAGT
TTAATCCCAATCGTTTCCATTTTCTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTCTGACTC
ATGGCTTAATCAGGATT
Found at i:5377610 original size:177 final size:175
Alignment explanation
Indices: 5377072--5377712 Score: 494
Period size: 177 Copynumber: 3.6 Consensus size: 175
5377062 ATCCCTCGCA
* * * * * *
5377072 TTTTCATTTTATAACTTATGGTTTATTCTC-AGTCATTTTCATTTTCTGACTCATAGTTTAATCT
1 TTTTCATTTTCTGACTCATGGTTTAATCACGA-TCATTTTCATTTT-TGACTCATGGTTTAATCT
* * * * * * * * ***
5377136 CTA-TCATTTTCATTTTTTGACACATGGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGT
64 -GAGTCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATCTTTCGACTCAAGGT
* * * * * * * *
5377200 TTAATCCTGGT--TGTTTCCATTTTTTGCCTTG-TGGTTTAATCTGGCTCG
128 TTAATCCT-ATCAT-TTTTCTTTTTTTG-ATGGCTAGTTTAATCTCGATCG
* * * *
5377248 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCCTGGTTTAATCAT
1 TTTTCATTTTCTGACTCATGGTTTAATCACGATCATTTTCA-TTTTTGACTCATGGTTTAATC-T
* * * **** * * * **
5377313 -AGTCATTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTT
64 GAGTCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATCTTTCGACTCAAGGTT
* * *
5377377 TAATCCTTATCATTTTTCTTTTTTTGATGGGTAGTTTAATCCCAATCG
129 TAATCC-TATCATTTTTCTTTTTTTGATGGCTAGTTTAATCTCGATCG
** * * *
5377425 TTTTCATTTTCTGACTTGTGGTTTAATCCCTAGTCATTTTCATTTTTGACTTATGGTTTAATCTG
1 TTTTCATTTTCTGACTCATGGTTTAATCACGA-TCATTTTCATTTTTGACTCATGGTTTAATCTG
* * *
5377490 AGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCATCGTTTTT-ATCTTTCGACTCAAGGTTT
65 AGTCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATCTTTCGACTCAAGGTTT
* *
5377554 AATCGC-AGTCATTTTTGTTTTTTTGACTTGCTA-TTTAATCTCGATCG
130 AATC-CTA-TCATTTTTCTTTTTTTGA-TGGCTAGTTTAATCTCGATCG
* * * * ** *
5377601 TTCTTCATTTTTTGACTCATGTTTTAATCACGATCGTTTTCATTTCTTGACTCGTAATTTAAACC
1 TT-TTCATTTTCTGACTCATGGTTTAATCACGATCATTTTCATTT-TTGACTCATGGTTT-AATC
*
5377666 CGA-TCGTATTT-ATTTTTTGACTCATGGTTTAATCCCAATCATTTTTC
63 TGAGTCGT-TTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTC
5377713 TTTTTCATTT
Statistics
Matches: 375, Mismatches: 72, Indels: 34
0.78 0.15 0.07
Matches are distributed among these distances:
175 2 0.01
176 170 0.45
177 186 0.50
178 17 0.05
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.51
Consensus pattern (175 bp):
TTTTCATTTTCTGACTCATGGTTTAATCACGATCATTTTCATTTTTGACTCATGGTTTAATCTGA
GTCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTTCATCTTTCGACTCAAGGTTTA
ATCCTATCATTTTTCTTTTTTTGATGGCTAGTTTAATCTCGATCG
Found at i:5377672 original size:142 final size:141
Alignment explanation
Indices: 5377410--5377717 Score: 336
Period size: 142 Copynumber: 2.2 Consensus size: 141
5377400 TTGATGGGTA
* * * * * * *
5377410 GTTTAATCCCAATC-GTTTTCATTTTCTGACTTG-TGGTTTAATCCCTAGTCATT-TTCATTTTT
1 GTTTAATCCCAATCATTTTTCTTTTTTTGACTTGCT-ATTTAATCTCGA-TCGTTCTTCATTTTT
* * * * ** * *
5377472 GACTTATGGTTTAATCTGAGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCATCGTTTTTAT
64 GACTCATGGTTTAATCCGAGTCGTTTTCATTTCTTGACTCATAATTTAAACCCCATCGTATTTAT
5377537 CTTTCGACTCAAG
129 CTTTCGACTCAAG
* * *
5377550 GTTTAATCGCAGTCATTTTTGTTTTTTTGACTTGCTATTTAATCTCGATCGTTCTTCATTTTTTG
1 GTTTAATCCCAATCATTTTTCTTTTTTTGACTTGCTATTTAATCTCGATCGTTCTTCA-TTTTTG
* * *
5377615 ACTCATGTTTTAATCACGA-TCGTTTTCATTTCTTGACTCGTAATTTAAACCCGATCGTATTTAT
65 ACTCATGGTTTAATC-CGAGTCGTTTTCATTTCTTGACTCATAATTTAAACCCCATCGTATTTAT
* * *
5377679 TTTTTGACTCATG
129 CTTTCGACTCAAG
5377692 GTTTAATCCCAATCATTTTTCTTTTT
1 GTTTAATCCCAATCATTTTTCTTTTT
5377718 CATTTTTTTA
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
140 16 0.12
141 28 0.21
142 90 0.66
143 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (141 bp):
GTTTAATCCCAATCATTTTTCTTTTTTTGACTTGCTATTTAATCTCGATCGTTCTTCATTTTTGA
CTCATGGTTTAATCCGAGTCGTTTTCATTTCTTGACTCATAATTTAAACCCCATCGTATTTATCT
TTCGACTCAAG
Found at i:5379593 original size:36 final size:35
Alignment explanation
Indices: 5379533--5379634 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 35
5379523 TTAATTCCAG
* * * * *
5379533 TCATTTTCATTTCCTAACTCATGGTTTAATCCTGC
1 TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
*
5379568 TCATTTTTC-TTTCTCTGA-TCGATGGTTTAATCCCGA
1 TCA-TTTCCATTT-TCTGACTC-ATGGTTTAATCCCGA
5379604 TCATTTCCATTTTCTGACTCATGGTTTAATC
1 TCATTTCCATTTTCTGACTCATGGTTTAATC
5379635 TTAGTTGTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
35 28 0.49
36 29 0.51
ACGTcount: A:0.19, C:0.24, G:0.11, T:0.47
Consensus pattern (35 bp):
TCATTTCCATTTTCTGACTCATGGTTTAATCCCGA
Found at i:5379794 original size:71 final size:71
Alignment explanation
Indices: 5379495--5379902 Score: 227
Period size: 71 Copynumber: 5.8 Consensus size: 71
5379485 TTTCATTTTT
* * * * * * * *
5379495 TTATCGTTCTCA-TTTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTCCTAACTCATGGTT
1 TTATCGTTTTCATTTTTCTAACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGGTT
5379559 TAATCC
66 TAATCC
** * * * * * *
5379565 TGCTCATTTTTC-TTTCTCTGA-TCGATGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGG
1 TTATC-GTTTTCATTTTTCTAACTAG-TGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGG
5379628 TTTAAT-C
64 TTTAATCC
* * * ** * * * * * *
5379635 TTAGTTGTTTCCAATTTT-TGGCTCGTGCTTTGAT-CGATGTCATTTT-TTTTTCTGACTCAAT-
1 TTA-TCGTTTTCATTTTTCTAACTAGTGGTTTAATCCCA-ATCATTTTCATTTTCTGACTC-ATG
5379696 GTTTAATCC
63 GTTTAATCC
* * * * *
5379705 -CACTTGTTTT--TGTCTTCTAACTCA-TGGTTTAATCCCAATCATTTTCGTTTTTTGACTCAAT
1 TTA-TCGTTTTCAT-TTTTCTAACT-AGTGGTTTAATCCCAATCATTTTCATTTTCTGACTC-AT
5379766 -GTTTAAT-C
62 GGTTTAATCC
* * * * *
5379774 TTGATCGTTTTCCTTTTTCTAGCTAGTGGTTTAATCTCAGTCATTTTCATTTTCTGACTCGTGGT
1 TT-ATCGTTTTCATTTTTCTAACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGGT
5379839 TTAATCC
65 TTAATCC
* * * * *
5379846 TTATCGTTTTCATTTTT-TGACTAGTGATTTAATCCTACTCATCTTTTA-TTTCTGACT
1 TTATCGTTTTCATTTTTCTAACTAGTGGTTTAATCCCAATCAT-TTTCATTTTCTGACT
5379903 TGTGATTTAA
Statistics
Matches: 256, Mismatches: 60, Indels: 44
0.71 0.17 0.12
Matches are distributed among these distances:
68 3 0.01
69 44 0.17
70 88 0.34
71 117 0.46
72 4 0.02
ACGTcount: A:0.18, C:0.20, G:0.12, T:0.50
Consensus pattern (71 bp):
TTATCGTTTTCATTTTTCTAACTAGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGGTT
TAATCC
Found at i:5380108 original size:105 final size:105
Alignment explanation
Indices: 5379724--5380406 Score: 380
Period size: 106 Copynumber: 6.5 Consensus size: 105
5379714 TTGTCTTCTA
* * ** * * * * *
5379724 ACTCATGGTTTAATCCCAATCATTTTCGTTTTTTGACTCAATG-TTTAATCTTGATC-GTTTTCC
1 ACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGACTC--TGATTTAATCTCGATCTTTTTTCA
* * * *
5379787 TTTTTCT-AGCTAGTGGTTTAATCTCAGTCATTTTCATTTTCTG
64 TTTTT-TGA-CTCGTGATTTAATCTCGGTCATTTTCATTTTTTG
* * * * * * *
5379830 ACTCGTGGTTTAATC-CTTATCGTTTTCATTTTTTGACTAGTGATTTAATC-CTACTCATCTTTT
1 ACTCATGGTTTAATCTC-GATTGTTTTCATTTTCTGACT-CTGATTTAATCTCGA-TC-TTTTTT
* * * * * * *
5379893 -A-TTTCTGACTTGTGATTTAATCTCAGTCGTTGTCATTTCTCG
62 CATTTTTTGACTCGTGATTTAATCTCGGTCATTTTCATTTTTTG
* * * * * * *
5379935 ACTCATGATTTAAT-TCTGATTGTTTTCA-TTTCTTAACTCGCGATTTAAACCCGAT-TGTATTC
1 ACTCATGGTTTAATCTC-GATTGTTTTCATTTTC-TGACTC-TGATTTAATCTCGATCTTTTTTC
* * *
5379997 ATTTTTTGATTCGTGGTTTAATC-CTGGTCGTTTTCATTTTTTG
63 ATTTTTTGACTCGTGATTTAATCTC-GGTCATTTTCATTTTTTG
*
5380040 ACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGACTCTCGATTTAATCTCGATCTTTTTTTAT
1 ACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGACTCT-GATTTAATCTCGATCTTTTTTCAT
* * * *
5380105 TTTTTAACTCGTGATTTAATTTCGGTCATTTTTCGTTCTTTG
65 TTTTTGACTCGTGATTTAATCTCGGTCA-TTTTCATTTTTTG
* * * * * * **
5380147 A--CATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTC-AGT-AGTTTT
1 ACTCATG-G-TTTAATCTCGATTGTTTTCATTTTCTGACTC-TGATTTAATCTCGA-TCTTTTTT
* * * *
5380208 CGA-TTTTTGACAT-GTGATTTAATATCGATCATTTTCATTCTCTG
62 C-ATTTTTTGAC-TCGTGATTTAATCTCGGTCATTTTCATTTTTTG
* * * * * *
5380252 ACTCATGATTTAATGAT-GGTTGTTTTTCATTTTCTAACTTTTGATTTAATCTCGATC-GTTTTC
1 ACTCATGGTTTAAT-CTCGATTG-TTTTCATTTTCTGAC-TCTGATTTAATCTCGATCTTTTTTC
** * * * *
5380315 ATTTTTTGACTCACGTTTTAATCTTGATCATTTTCATTTTTTA
63 ATTTTTTGACTCGTGATTTAATCTCGGTCATTTTCATTTTTTG
* * *
5380358 ACTCGTGGTTTAATCTCGGTTGTTTCTC-TTTTCTGACTCGTGGTTTAAT
1 ACTCATGGTTTAATCTCGATTGTTT-TCATTTTCTGACTC-TGATTTAAT
5380407 TTTGGTTGTT
Statistics
Matches: 451, Mismatches: 88, Indels: 77
0.73 0.14 0.12
Matches are distributed among these distances:
103 4 0.01
104 6 0.01
105 187 0.41
106 191 0.42
107 58 0.13
108 5 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (105 bp):
ACTCATGGTTTAATCTCGATTGTTTTCATTTTCTGACTCTGATTTAATCTCGATCTTTTTTCATT
TTTTGACTCGTGATTTAATCTCGGTCATTTTCATTTTTTG
Found at i:5380607 original size:141 final size:141
Alignment explanation
Indices: 5380306--5380637 Score: 329
Period size: 141 Copynumber: 2.4 Consensus size: 141
5380296 TTTAATCTCG
* * * * *
5380306 ATCG-TTTTCATTTTTTGACTCACGTTTTAATCTTGATCATTTTCA-TTTTTTAACTCGTGGTTT
1 ATCGCTTTTCATTTTATGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTAACTCGTGATTT
* * **
5380369 AATCTCGGTTGTTTCTCTTTTCTGACTCGTGGTTTAATTTTGGTTGTTTTCATTTTGTGACTTAC
66 AATCTCGGTTGTTTCTCTTTTCTGACTCGTGATTTAATTTTAGTTGTTTTCATTTTAAGAC-TAC
*
5380434 GGTTTAATTCCC
130 GGTCTAATTCCC
* **** * *
5380446 ATCGCTTTT-GTTCCCCGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTGATTCGTGATTT
1 ATCGCTTTTCATTTTATGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTAACTCGTGATTT
*
5380510 AATC-CTTGTTGTTT-TCATTTTCTGACTCGTGATTTAATTTTAGTTGTTTTCATTATCTAAGAC
66 AATCTC-GGTTGTTTCTC-TTTTCTGACTCGTGATTTAATTTTAGTTGTTTTCATT-T-TAAGAC
*
5380573 -GCGGTCTAA-TCCC
127 TACGGTCTAATTCCC
* * * * **
5380586 -TCTCATTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTCATTTTTT
1 ATCGC-TTTTCATTTTATGACTCATGATTTAATCTTGGTCATTTTCATTTTTT
5380638 GACTCATAGT
Statistics
Matches: 155, Mismatches: 29, Indels: 15
0.78 0.15 0.08
Matches are distributed among these distances:
139 3 0.02
140 43 0.28
141 104 0.67
142 1 0.01
143 4 0.03
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.52
Consensus pattern (141 bp):
ATCGCTTTTCATTTTATGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTAACTCGTGATTT
AATCTCGGTTGTTTCTCTTTTCTGACTCGTGATTTAATTTTAGTTGTTTTCATTTTAAGACTACG
GTCTAATTCCC
Found at i:5381118 original size:36 final size:34
Alignment explanation
Indices: 5381000--5381203 Score: 135
Period size: 35 Copynumber: 5.8 Consensus size: 34
5380990 AATATGGGTT
* *
5381000 GTTTTCATTTTTTGACTCAC-AGTTTAATCCCGTC
1 GTTTTCATTTTTTGACTCACGA-TTTAATACAGTC
* * *
5381034 GTTTTCATCTTTCGACTCACGATTTAATCACGGTC
1 GTTTTCATTTTTTGACTCACGATTTAAT-ACAGTC
* * *
5381069 ATTTTCATCTTTTTGACTTACGATTTAATGTCAGTC
1 GTTTTCAT-TTTTTGACTCACGATTTAAT-ACAGTC
** *
5381105 GTTCTTCATTTTTTGACTCGTGTTTTAAT-CACGATC
1 GTT-TTCATTTTTTGACTCACGATTTAATACA-G-TC
* * **
5381141 GGTTTCATTTCTTGACTCGTGATTTAA-ACCAGATC
1 GTTTTCATTTTTTGACTCACGATTTAATA-CAG-TC
** * *
5381176 GCATTCATTTTTTGACTCATGGTTTAAT
1 GTTTTCATTTTTTGACTCACGATTTAAT
5381204 CCCAATCATT
Statistics
Matches: 137, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
34 26 0.19
35 61 0.45
36 45 0.33
37 5 0.04
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (34 bp):
GTTTTCATTTTTTGACTCACGATTTAATACAGTC
Found at i:5381294 original size:35 final size:34
Alignment explanation
Indices: 5381237--5381384 Score: 100
Period size: 35 Copynumber: 4.2 Consensus size: 34
5381227 TTAACGTTCT
* * * * *
5381237 CATTTTCTAACTCATAGCTTAATTCCAGTCGTTTT
1 CATTTTTTGACTCATGGTTTAA-TCCAGTCGTTTC
* * ** *
5381272 CATTTGTTGACTCATGGTTTAATCCTGCTTATTTTT
1 CATTTTTTGACTCATGGTTTAATCCAG--TCGTTTC
* * *
5381308 CTTTTTTCTGAC-CGATGGTTTAATCCCGGTCATTTC
1 CATTTTT-TGACTC-ATGGTTTAAT-CCAGTCGTTTC
*
5381344 CATTTTTTGACTCATGGTTTAATCTTAGTCGTTTC
1 CATTTTTTGACTCATGGTTTAATC-CAGTCGTTTC
5381379 CATTTT
1 CATTTT
5381385 CTAGCTCGTG
Statistics
Matches: 88, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
34 5 0.06
35 44 0.50
36 22 0.25
37 14 0.16
38 3 0.03
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (34 bp):
CATTTTTTGACTCATGGTTTAATCCAGTCGTTTC
Found at i:5382217 original size:106 final size:107
Alignment explanation
Indices: 5382082--5382289 Score: 242
Period size: 107 Copynumber: 2.0 Consensus size: 107
5382072 TTAACTCGTG
* * * ** *
5382082 ATTTAATTTCGATCATTTTTCGTTCTCTGACAT-GTGATTTAGTTTTGG-TGGTTTTGATTTTCT
1 ATTTAATATCGATCATTTTTCGTTCTCTGAC-TCATGATTTAATGATGGTTGGTTTTCATTTTCT
* *
5382145 GACTCATGATTTATTCACAGTAGTTTTCAATTTTTGACATGTA
65 GACTCATGATTTAATCACAATAGTTTTCAATTTTTGACATGTA
* *
5382188 ATTTAATATCGATCA-TTTTCATTTCTCTGACTCATGATTTAATGATGGTTGTTTTTCATTTTCT
1 ATTTAATATCGATCATTTTTC-GTTCTCTGACTCATGATTTAATGATGGTTGGTTTTCATTTTCT
** * * *
5382252 GACTTGTGATTTAATCTCAATCGTTTTCATTTTTTGAC
65 GACTCATGATTTAATCACAATAGTTTTCAATTTTTGAC
5382290 TCACGATTTA
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
105 6 0.07
106 34 0.40
107 44 0.52
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.51
Consensus pattern (107 bp):
ATTTAATATCGATCATTTTTCGTTCTCTGACTCATGATTTAATGATGGTTGGTTTTCATTTTCTG
ACTCATGATTTAATCACAATAGTTTTCAATTTTTGACATGTA
Found at i:5382223 original size:71 final size:71
Alignment explanation
Indices: 5382133--5382299 Score: 185
Period size: 71 Copynumber: 2.4 Consensus size: 71
5382123 GTTTTGGTGG
* *
5382133 TTTTGATTTTCTGACTCATGATTTATTCACAGTAG-TTTTCAATTTT-TGACATGTAATTTAATA
1 TTTTCATTTTCTGACTCATGATTTAATCACAGTAGTTTTTC-ATTTTCTGACATGTAATTTAATA
*
5382196 TCGATCA
65 TCAATCA
* ** * * * *
5382203 TTTTCATTTCTCTGACTCATGATTTAATGATGGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TTTTCATTT-TCTGACTCATGATTTAATCACAGTAGTTTTTCATTTTCTGACATGTAATTTAATA
*
5382268 TCAATCG
65 TCAATCA
* *
5382275 TTTTCATTTTTTGACTCACGATTTA
1 TTTTCATTTTCTGACTCATGATTTA
5382300 GTCCTGATCA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
70 8 0.10
71 40 0.49
72 33 0.41
ACGTcount: A:0.23, C:0.14, G:0.12, T:0.51
Consensus pattern (71 bp):
TTTTCATTTTCTGACTCATGATTTAATCACAGTAGTTTTTCATTTTCTGACATGTAATTTAATAT
CAATCA
Found at i:5382572 original size:141 final size:141
Alignment explanation
Indices: 5382133--5382618 Score: 331
Period size: 141 Copynumber: 3.5 Consensus size: 141
5382123 GTTTTGGTGG
* * * ** *
5382133 TTTTGATTTTCTGACTCATGATTTATTCACAGT-AGTTTTCA-ATTTTTGA--CATGTAATTTAA
1 TTTTCATTTTATGACTCATGATTTAATCATGGTCA-TTTTCATTTTTTTGACTCATG--ATTTAA
* * * ** * *
5382194 TATCGATCATTTTCATTTCTCTGACTCATGATTTAATGATGGTTGTTTTTCATTTTCTGACT-TG
63 TCTCGGTTATTTTCATTT-TCTGACTCATGATTTAATTTTGGTTG-TTTTCATTTTATGACTACG
* *
5382258 TGATTTAA-TCTCAATCG-
126 -G-TCTAATTC-CCATCGC
* * * * * * *
5382275 TTTTCATTTTTTGACTCACGATTTAGTCCTGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCT
1 TTTTCATTTTATGACTCATGATTTAATCATGGTCATTTTCATTTTTTTGACTCATGATTTAATCT
* ** * * * *
5382339 CGGTTGTTTTTGTTTTCTGACTTATGGTTTAATTTTGGTTGTTTTCATTTTTTGACTTACGGTTT
66 CGGTTATTTTCATTTTCTGACTCATGATTTAATTTTGGTTGTTTTCATTTTATGAC-TACGGTCT
5382404 AATTCCCATCGC
130 AATTCCCATCGC
* **** *
5382416 TTTT-GTTCCCCGACTCATGATTTAATCATGGTCATTTTCATTTTTTTGATTCATGATTTAATC-
1 TTTTCATTTTATGACTCATGATTTAATCATGGTCATTTTCATTTTTTTGACTCATGATTTAATCT
* * *
5382479 CTTGTTATTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCTATGAC-GCGGT
66 C-GGTTATTTTCATTTTCTGACTCATGATTTAATTTTGGTTGTTTTCATT-T-TATGACTACGGT
5382543 CTAA-TCCC-TCGC
128 CTAATTCCCATCGC
* * * *
5382555 ATTTTCATTTTATGACTCGTGGTTTATTTTCA--GTCATTTTCA-TTTTTTGAC-CTATGGTTTA
1 -TTTTCATTTTATGACTCATGATTTA--ATCATGGTCATTTTCATTTTTTTGACTC-ATGATTTA
5382616 ATC
62 ATC
5382619 CTGATCGTTT
Statistics
Matches: 272, Mismatches: 56, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
139 5 0.02
140 78 0.29
141 120 0.44
142 57 0.21
143 9 0.03
144 3 0.01
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (141 bp):
TTTTCATTTTATGACTCATGATTTAATCATGGTCATTTTCATTTTTTTGACTCATGATTTAATCT
CGGTTATTTTCATTTTCTGACTCATGATTTAATTTTGGTTGTTTTCATTTTATGACTACGGTCTA
ATTCCCATCGC
Found at i:5383280 original size:340 final size:339
Alignment explanation
Indices: 5382873--5383579 Score: 1092
Period size: 340 Copynumber: 2.1 Consensus size: 339
5382863 ATCCCAATCG
* ** *
5382873 TTTTCATTTACTGACTTGTGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGGTTTATTCTG
1 TTTTCATTTCCTGACTCATGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGGTTTAATCTG
* ** *
5382938 GGTTGTTTTCATTTTTTGACTCACGGTTTAATCCCTATCGTTTTTGTCTTCTAACTCACGGTTTA
66 GGTTGTTTTCATTTTTTGACTCACGGTTTAAT-CCTATCATTTTCATCTTCCAACTCACGGTTTA
* * ** * *
5383003 ATTGCGATCATTTTCATTTTTTTTTCTTACGATTTAATCTCGGTCATTCTT-AATTTTTGGCTCG
130 ATCGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTTCAATTTTTGACTCA
* * ** * *
5383067 TGTTTTAATCATGATCTTTTTTATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTG
195 TGTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTG
*
5383132 ACTCATGGGTTAATCCAAATCATTTTTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGT
260 ACTCATGGGTTAAT-CAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGT
5383197 AGCTTAATTCCAGTCA
324 AGCTTAATTCCAGTCA
* * *
5383213 TTTTCATTTCCTGACTCATGGTTTAATCCTGTTCGTTTTCATTTTTTGACTTGTGGTTTAATCTG
1 TTTTCATTTCCTGACTCATGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGGTTTAATCTG
** *
5383278 GGTTGTTTTCATTTTTTGACTCACGGTTTAATTTTGTCATTTTCATCTTCCAACTCACGGTTTAA
66 GGTTGTTTTCATTTTTTGACTCACGGTTTAATCCTATCATTTTCATCTTCCAACTCACGGTTTAA
* * *
5383343 TCGCGATAATTTTCATTTTTTTGACTTGCGATTTAATCTCGGTCGTTCTTCATTTTTTGACTCAT
131 TCGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTTCAATTTTTGACTCAT
5383408 GTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGA
196 GTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGA
* **
5383473 CTCATGGTTTAATCTTATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTAG
261 CTCATGGGTTAATCAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTAG
5383538 CTTAATTCCAGTCA
326 CTTAATTCCAGTCA
5383552 TTTTCATTTCCTGACTCATGGTTTAATC
1 TTTTCATTTCCTGACTCATGGTTTAATC
5383580 TTGCTCATTT
Statistics
Matches: 333, Mismatches: 33, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
339 161 0.48
340 172 0.52
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (339 bp):
TTTTCATTTCCTGACTCATGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGGTTTAATCTG
GGTTGTTTTCATTTTTTGACTCACGGTTTAATCCTATCATTTTCATCTTCCAACTCACGGTTTAA
TCGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTTCAATTTTTGACTCAT
GTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGA
CTCATGGGTTAATCAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTAG
CTTAATTCCAGTCA
Found at i:5383334 original size:104 final size:106
Alignment explanation
Indices: 5383209--5383433 Score: 269
Period size: 104 Copynumber: 2.1 Consensus size: 106
5383199 CTTAATTCCA
* * * ** * *
5383209 GTCATTTTCATTTCCTGACTCATGGTTTAATC-CTGTTCGTTTTCA-TTTTTTGACTTGTGGTTT
1 GTCATTTTCATTTCCTAACTCACGGTTTAATCGC-GATAATTTTCATTTTTTTGACTTGCGATTT
* *
5383272 AATCTGGGTTGTT-TTCATTTTTTGACTCACGGTTTAATTTT
65 AATCTCGGTCGTTCTTCATTTTTTGACTCACGGTTTAATTTT
5383313 GTCATTTTCATCTTCC-AACTCACGGTTTAATCGCGATAATTTTCATTTTTTTGACTTGCGATTT
1 GTCATTTTCAT-TTCCTAACTCACGGTTTAATCGCGATAATTTTCATTTTTTTGACTTGCGATTT
* * **
5383377 AATCTCGGTCGTTCTTCATTTTTTGACTCATGTTTTAATCAT
65 AATCTCGGTCGTTCTTCATTTTTTGACTCACGGTTTAATTTT
*
5383419 GATCGTTTTCATTTC
1 G-TCATTTTCATTTC
5383434 TTGACTCAAG
Statistics
Matches: 102, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
104 33 0.32
105 32 0.31
106 28 0.27
107 9 0.09
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (106 bp):
GTCATTTTCATTTCCTAACTCACGGTTTAATCGCGATAATTTTCATTTTTTTGACTTGCGATTTA
ATCTCGGTCGTTCTTCATTTTTTGACTCACGGTTTAATTTT
Found at i:5383430 original size:35 final size:34
Alignment explanation
Indices: 5381602--5383487 Score: 484
Period size: 35 Copynumber: 54.0 Consensus size: 34
5381592 TCATTTTTCC
* ** **
5381602 ATCGTTTTCATTTTCTGACTTGTGGTTTAATCCCA
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
5381637 ATCGTTTTCATTTTTTGACTCAAT-GTTTAATCTCG
1 ATCGTTTTCATTTTTTGACTC-ATGGTTTAATCT-G
5381672 A-CTGTTTTTC-TTTTTCT-AGC-CAGTGGTTTAATCTCG
1 ATC-G-TTTTCATTTTT-TGA-CTCA-TGGTTTAATCT-G
* * * *
5381708 GTCATTTTCATTTTTTGACTCGTGGTTTAATCCTT
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* *
5381743 ATCATTTTCATTTTTTGACT-AGTGATTTAATCCTG
1 ATCGTTTTCATTTTTTGACTCA-TGGTTTAAT-CTG
* * * * *
5381778 GTCATTTT--TTATTTCTGACTCGTGATTTAATCTT
1 ATCGTTTTCATT-TTT-TGACTCATGGTTTAATCTG
* * * * **
5381812 AGTCATTGTCATTTCTTGACTCATGATTTAATCCCA
1 A-TCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * * * *
5381848 ATTGTTTTCATTTCTTAACTCATGATTTAAACTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * *
5381883 ATTGTATTCATTTTTTGACTCGTGGTTTAATCCTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* *
5381918 GTCGTTTTCATTTTTTGACACATGGTTTAATCTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* ****
5381953 GTCGTTTTCATTTTTTGACTCGCACTTTAATCTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * * * * * *
5381988 ATCTTTTTTATTTTCTAACTCGTAGTTTAATACGG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * **
5382023 GTCATTTTCATTTTTTGACTCACAGTTTAATCTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * * * * *
5382058 GTCATTTTCATTTTTTAACTCGTGATTTAATTTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * * * * *
5382093 ATCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTTG
1 ATC-GTTTTCATTTTTTGACTCATG-G-TTTA-ATCTG
* * * * * * **
5382129 GTGGTTTTGATTTTCTGACTCATGATTTATTCAC
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCTG
* * * *
5382163 AGTAGTTTTCAATTTTTGA--CATGTAATTTAATATCG
1 A-TCGTTTTCATTTTTTGACTCATG--GTTTAATCT-G
* * * *
5382199 ATCATTTTCATTTCTCTGACTCATGATTTAATGATG
1 ATCGTTTTCATTT-TTTGACTCATGGTTTAAT-CTG
* * * ** * *
5382235 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCA
1 ATCG-TTTTCATTTTTTGACTCATGGTTTAATCT-G
* * *
5382271 ATCGTTTTCATTTTTTGACTCACGATTTAGTCCTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* *
5382306 ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * ** * * *
5382341 GTTGTTTTTGTTTTCTGACTTATGGTTTAATTTTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAA-TCTG
* * * * **
5382376 GTTGTTTTCATTTTTTGACTTACGGTTTAATTCCC
1 ATCGTTTTCATTTTTTGACTCATGGTTTAA-TCTG
* **** *
5382411 ATCGCTTTT-GTTCCCCGACTCATGATTTAATCATG
1 ATCG-TTTTCATTTTTTGACTCATGGTTTAATC-TG
* * * *
5382446 GTCATTTTCATTTTTTTGATTCATGATTTAATCCTTG
1 ATCGTTTTCA-TTTTTTGACTCATGGTTTAAT-C-TG
** * * * *
5382483 -TTATTTTCATTTTCTGACTCGTGATTTAATTTTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAA-TCTG
* * * * * *
5382517 GTTGTTTTCATTATCTATGACGC--GGTCTAATC-C
1 ATCGTTTTCATT-T-TTTGACTCATGGTTTAATCTG
* * * * * *
5382550 CTCGCATTTTCATTTTATGACTCGTGGTTTATTTTC
1 ATCG--TTTTCATTTTTTGACTCATGGTTTAATCTG
*
5382586 AGTCATTTTCATTTTTTGAC-CTATGGTTTAATCCTG
1 A-TCGTTTTCATTTTTTGACTC-ATGGTTTAAT-CTG
* * ** *
5382622 ATCGTTTTCTTTTTTTGATTGGTGGTTTAGTCCTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * * * **
5382657 GTTGTTTCCATTTTTTAACTTGTGGTTTAATCTGG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * * *
5382692 CTAGTTTTCATTTTCTGACTCATGGCTTAAT-TAGG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT--G
** * *
5382727 ATTATTTTCATTTTTTGACTCGTCGTTTAATCATTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATC--TG
* * * *
5382763 -TCATTTTAATTTTTTGACTCGTGGTCTAATCGTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATC-TG
* * * *
5382797 GTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCTT
1 ATC-GTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * * **
5382833 ATCATTTTTCTTTTTTTGA-TGGC-TAGTTTAATCCCA
1 ATC-GTTTTCATTTTTTGACT--CATGGTTTAAT-CTG
** **
5382869 ATCGTTTTCATTTACTGACTTGTGGTTTAATCCTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * * ** *
5382904 GTCGTTTTCATTTTCTAACTTGTGGTTTATTCTGG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * *
5382939 GTTGTTTTCATTTTTTGACTCACGGTTTAATCCCT-
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT--CTG
** * * * *
5382974 ATCGTTTTTGTCTTCTAACTCACGGTTTAAT-TGCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT--G
* ** * * *
5383009 ATCATTTTCATTTTTTTTTCTTACGATTTAATCTCG
1 ATCGTTTTCA-TTTTTTGACTCATGGTTTAATCT-G
* * * * * *
5383045 GTCATTCTT-AATTTTTGGCTCGTGTTTTAATCATG
1 ATCGTT-TTCATTTTTTGACTCATGGTTTAATC-TG
* * * * * * *
5383080 ATCTTTTTTATTTCTTGACTCGTGATTTAAACCCG
1 ATCGTTTTCATTTTTTGACTCATGGTTT-AATCTG
** * **
5383115 ATCGCATTCATTTTTTGACTCATGGGTTAATCCAA
1 ATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* * *
5383150 ATCATTTT--TCTTTT---TCAT--TTT--T-TT
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCTG
* * * * * * *
5383174 ATCGTTCTCATTTTCTAACTCGTAGCTTAAT-TCC
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* **
5383208 AGTCATTTTCATTTCCTGACTCATGGTTTAATCCTG
1 A-TCGTTTTCATTTTTTGACTCATGGTTTAAT-CTG
* **
5383244 TTCGTTTTCATTTTTTGACTTGTGGTTTAATCTGG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT-G
* * * *
5383279 GTTGTTTTCATTTTTTGACTCACGGTTTAATTTTG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAA-TCTG
* * *** * *
5383314 -TCATTTTCATCTTCCAACTCACGGTTTAATCGCG
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATC-TG
**
5383348 ATAATTTTCATTTTTTTGACT--TGCGATTTAATCTCG
1 ATCGTTTTCA-TTTTTTGACTCATG-G-TTTAATCT-G
* *
5383384 GTCGTTCTTCATTTTTTGACTCATGTTTTAATCATG
1 ATCGTT-TTCATTTTTTGACTCATGGTTTAATC-TG
* * * * *
5383420 ATCGTTTTCATTTCTTGACTCAAGATTTAAACCCG
1 ATCGTTTTCATTTTTTGACTCATGGTTT-AATCTG
** * *
5383455 ATCGCATTCATTCTCTGACTCATGGTTTAATCT
1 ATCGTTTTCATTTTTTGACTCATGGTTTAATCT
5383488 TATCATTTGT
Statistics
Matches: 1382, Mismatches: 355, Indels: 229
0.70 0.18 0.12
Matches are distributed among these distances:
24 6 0.00
26 5 0.00
28 2 0.00
29 3 0.00
30 4 0.00
31 2 0.00
32 1 0.00
33 23 0.02
34 72 0.05
35 963 0.70
36 249 0.18
37 45 0.03
38 7 0.01
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (34 bp):
ATCGTTTTCATTTTTTGACTCATGGTTTAATCTG
Found at i:5383588 original size:35 final size:34
Alignment explanation
Indices: 5383548--5383694 Score: 109
Period size: 35 Copynumber: 4.2 Consensus size: 34
5383538 CTTAATTCCA
*
5383548 GTCATTTTCATTTCCTGACTCATGGTTTAATCTT
1 GTCATTTTCATTTTCTGACTCATGGTTTAATCTT
* * **
5383582 GCTCATTTT-TTTTTCTGA-TCGGTGGTTTAATCCC
1 G-TCATTTTCATTTTCTGACTC-ATGGTTTAATCTT
** *
5383616 GATCATTTTCATTTTCTGTGTCACGGTTTAATCTT
1 G-TCATTTTCATTTTCTGACTCATGGTTTAATCTT
* * * * * *
5383651 AGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTAG
1 -GTCATTTTCATTTTCTGACTCATGGTTTAATCT-T
5383687 GTCATTTT
1 GTCATTTT
5383695 TTTTGACTCA
Statistics
Matches: 85, Mismatches: 22, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
33 2 0.02
34 26 0.31
35 54 0.64
36 3 0.04
ACGTcount: A:0.15, C:0.20, G:0.16, T:0.50
Consensus pattern (34 bp):
GTCATTTTCATTTTCTGACTCATGGTTTAATCTT
Found at i:5383683 original size:339 final size:338
Alignment explanation
Indices: 5382873--5383662 Score: 967
Period size: 339 Copynumber: 2.3 Consensus size: 338
5382863 ATCCCAATCG
* ** * * * * * * **
5382873 TTTTCATTTACTGACTTGTGGTTTAATCCTGGTCGTTTTCATTTTCTAACTTGTGGTTTATTCTG
1 TTTTCATTTCCTGACTCATGGTTTAATCCTGCTCATTTT-ATTTTTTGACTGGTGGTTTAATCCC
* ** * * * *** * *
5382938 GGTTGTTTTCATTTTTTGACTCACGGTTTAATCCCTA-TCGTTTTTGTCTTCTAACTCACGGTTT
65 GATCATTTTCATTTTCTGACTCACGGTTTAAT--TTAGTCATTTCCATCTTCCAACTCACGCTTT
* * ** * *
5383002 AATTGCGATCATTTTCATTTTTTTTTCTTACGATTTAATCTCGGTCATTCTTAATTTTTGGCTCG
128 AATCGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTTAATTTTTGACTCA
* * ** * *
5383067 TGTTTTAATCATGATCTTTTTTATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTG
193 TGTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTG
*
5383132 ACTCATGGGTTAATCCAAATCATTTTTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGT
258 ACTCATGGGTTAATCCAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGT
5383197 AGCTTAATTCCAGTCA
323 AGCTTAATTCCAGTCA
* * * **
5383213 TTTTCATTTCCTGACTCATGGTTTAATCCTGTTCGTTTTCATTTTTTGACTTGTGGTTTAATCTG
1 TTTTCATTTCCTGACTCATGGTTTAATCCTGCTCATTTT-ATTTTTTGACTGGTGGTTTAATCCC
* ** * * * *
5383278 GGTTGTTTTCATTTTTTGACTCACGGTTTAATTTTGTCATTTTCATCTTCCAACTCACGGTTTAA
65 GATCATTTTCATTTTCTGACTCACGGTTTAATTTAGTCATTTCCATCTTCCAACTCACGCTTTAA
* * *
5383343 TCGCGATAATTTTCATTTTTTTGACTTGCGATTTAATCTCGGTCGTTCTTCATTTTTTGACTCAT
130 TCGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTT-AATTTTTGACTCAT
5383408 GTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGA
194 GTTTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGA
* **
5383473 CTCATGGTTTAAT-CTTATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTA
259 CTCATGGGTTAATCCAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTA
5383537 GCTTAATTCCAGTCA
324 GCTTAATTCCAGTCA
*
5383552 TTTTCATTTCCTGACTCATGGTTTAATCTTGCTCATTTT-TTTTTCTGA-TCGGTGGTTTAATCC
1 TTTTCATTTCCTGACTCATGGTTTAATCCTGCTCATTTTATTTTT-TGACT-GGTGGTTTAATCC
** *
5383615 CGATCATTTTCATTTTCTGTGTCACGGTTTAATCTTAGTCGTTTCCAT
64 CGATCATTTTCATTTTCTGACTCACGGTTTAAT-TTAGTCATTTCCAT
5383663 TTTCTGGCTC
Statistics
Matches: 398, Mismatches: 47, Indels: 11
0.87 0.10 0.02
Matches are distributed among these distances:
337 6 0.02
338 41 0.10
339 179 0.45
340 172 0.43
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (338 bp):
TTTTCATTTCCTGACTCATGGTTTAATCCTGCTCATTTTATTTTTTGACTGGTGGTTTAATCCCG
ATCATTTTCATTTTCTGACTCACGGTTTAATTTAGTCATTTCCATCTTCCAACTCACGCTTTAAT
CGCGATAATTTTCATTTTTTTGACTTACGATTTAATCTCGGTCATTCTTAATTTTTGACTCATGT
TTTAATCATGATCGTTTTCATTTCTTGACTCAAGATTTAAACCCGATCGCATTCATTCTCTGACT
CATGGGTTAATCCAAATCATTTGTCTTTTTCATTTTTTTATCGTTCTCATTTTCTAACTCGTAGC
TTAATTCCAGTCA
Found at i:5384331 original size:105 final size:104
Alignment explanation
Indices: 5383988--5384379 Score: 280
Period size: 105 Copynumber: 3.8 Consensus size: 104
5383978 TGAATCTCGA
*** ** * * *
5383988 TCATTTTCATTTTTTGACTCGTGGTTTAATCCTTATCATTTTCATTTTTTGACT-AGTGATTTAA
1 TCATTTTCATTTTTTGACTCAAAGTTTAATCCCGATCATTTTCATTTTCTAACTCA-CGATTTAA
* * * *
5384052 TC-CTGGTCATTTTTTATTTCTGACTCGT-GATTTAAT-CTCAG
65 TCTC-GATCA-TTTTTATTTTTAACTCGTAG-TTTAATAC-GAG
* * * ** ***
5384093 TCATTGTCATTTCTTGACTC-ATGATTTAATCCCGATTGTTTTCA-TTTCTTAACTCAATTTTTA
1 TCATTTTCATTTTTTGACTCAAAG-TTTAATCCCGATCATTTTCATTTTC-TAACTCACGATTTA
* * * * *
5384156 AAC-CTGATTGCA--TTCATTTTTAACTCGTGGTTTAATCCTAG
64 ATCTC-GA-T-CATTTTTATTTTTAACTCGTAGTTTAATACGAG
* * * * * *
5384197 TCGTTTTTATTTTTTGACTTAAAGTTTAATCTCGATCGTTTTCATTTTCTGACTCACGATTTAAT
1 TCATTTTCATTTTTTGACTCAAAGTTTAATCCCGATCATTTTCATTTTCTAACTCACGATTTAAT
* *
5384262 CTCGATCTTTTTTATTTTCTAACTTGTAGTTTAATACGAG
66 CTCGATCATTTTTATTTT-TAACTCGTAGTTTAATACGAG
* * **
5384302 TCATTTTCATTTTTTGACTCACAGTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAAT
1 TCATTTTCATTTTTTGACTCAAAGTTTAATCCCGATCATTTTCATTTTCTAACTCACGATTTAAT
*
5384367 TTCGATCATTTTT
66 CTCGATCATTTTT
5384380 CGTTCTCTGA
Statistics
Matches: 224, Mismatches: 50, Indels: 26
0.75 0.17 0.09
Matches are distributed among these distances:
102 1 0.00
103 1 0.00
104 79 0.35
105 139 0.62
106 2 0.01
107 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (104 bp):
TCATTTTCATTTTTTGACTCAAAGTTTAATCCCGATCATTTTCATTTTCTAACTCACGATTTAAT
CTCGATCATTTTTATTTTTAACTCGTAGTTTAATACGAG
Done.