Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 36 of 109
Found at i:5384373 original size:35 final size:35
Alignment explanation
Indices: 5383980--5384378 Score: 227
Period size: 35 Copynumber: 11.4 Consensus size: 35
5383970 CTAGTGGTTG
*
5383980 AATCTCGATCATTTTCATTTTTTGACTCGTGGTTT
1 AATCTCGATCATTTTCATTTTTTGACTCGTGATTT
* *
5384015 AATC-CTTATCATTTTCATTTTTTGACTAGTGATTT
1 AATCTC-GATCATTTTCATTTTTTGACTCGTGATTT
*
5384050 AATC-CTGGTCATTTT--TTATTTCTGACTCGTGATTT
1 AATCTC-GATCATTTTCATT-TTT-TGACTCGTGATTT
* * *
5384085 AATCTC-AGTCATTGTCATTTCTTGACTCATGATTT
1 AATCTCGA-TCATTTTCATTTTTTGACTCGTGATTT
* ** * * * *
5384120 AATCCCGATTGTTTTCATTTCTTAACTCAAT-TTTT
1 AATCTCGATCATTTTCATTTTTTGACTC-GTGATTT
* * *
5384155 AAAC-CTGATTGCA--TTCA-TTTTTAACTCGTGGTTT
1 AATCTC-GA-T-CATTTTCATTTTTTGACTCGTGATTT
* * * *
5384189 AATC-CTAGTCGTTTTTATTTTTTGACT--TAAAGTTT
1 AATCTCGA-TCATTTTCATTTTTTGACTCGT-GA-TTT
* * **
5384224 AATCTCGATCGTTTTCATTTTCTGACTCACGATTT
1 AATCTCGATCATTTTCATTTTTTGACTCGTGATTT
* * * * *
5384259 AATCTCGATCTTTTTTATTTTCTAACTTGT-AGTTT
1 AATCTCGATCATTTTCATTTTTTGACTCGTGA-TTT
* **
5384294 AAT-ACGAGTCATTTTCATTTTTTGACTC-ACAGTTT
1 AATCTCGA-TCATTTTCATTTTTTGACTCGTGA-TTT
* *
5384329 AATCCCGATCATTTTCATTTTTTAACTCGTGATTT
1 AATCTCGATCATTTTCATTTTTTGACTCGTGATTT
*
5384364 AATTTCGATCATTTT
1 AATCTCGATCATTTT
5384379 TCGTTCTCTG
Statistics
Matches: 284, Mismatches: 54, Indels: 52
0.73 0.14 0.13
Matches are distributed among these distances:
32 1 0.00
33 6 0.02
34 28 0.10
35 233 0.82
36 14 0.05
37 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (35 bp):
AATCTCGATCATTTTCATTTTTTGACTCGTGATTT
Found at i:5385661 original size:35 final size:35
Alignment explanation
Indices: 5385513--5395549 Score: 1457
Period size: 35 Copynumber: 285.1 Consensus size: 35
5385503 AATCTCGTCA
* * * **
5385513 TTTTCATTTTTAATAACTCGTGGTTTAATCCTTATCG
1 TTTTCATTTTT--TGACTCATGATTTAATCCCGATCG
* *
5385550 TTTTCA-TTTTTGACT-AGTGATTTAAT-CCTAGTCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGA-TCG
* * * *
5385584 TTTT--TTATTTCTAACTCGTGATTTAATCTC-AGTCA
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGA-TCG
* * *
5385619 TTGTCATTTATTGACTCATGATTTAATCCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * *
5385654 TTTTCATTTCCTAACTCATGATTTAAACCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5385689 TATTCATTTTTTGACTCGTGGTTTAATCCTGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5385724 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5385759 TTTTCATTTTCTGACTCACGATTTAATCTCGATCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * * *
5385794 TTTTTATTTTCTAACTCAT-AGTGTAATACAGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* *
5385829 TTTTCATTTTTTGACTCA-CAGTTTAATCCCGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * * * **
5385864 TTTTCATTTTTTAACTCGTGATTTAATTTCGGTTAT
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* * * * * ** * *
5385900 TTTTCCTTCTCTGACAT-GTGATTTAGTTTCGGTGG
1 TTTTCATTTTTTGAC-TCATGATTTAATCCCGATCG
* * * * *
5385935 TTTTGATTTTCTGACTCATGATTTATTCTC-AGTAG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * ** *
5385970 TTTTTGA-TTTTTGACAT-GTGATTTAATATCGATCA
1 -TTTTCATTTTTTGAC-TCATGATTTAATCCCGATCG
** * *
5386005 TTTTCATTTCTTTGACTCATGATTTAATGGCGGTTG
1 TTTTCATTT-TTTGACTCATGATTTAATCCCGATCG
* * ** *
5386041 TTTTTCATTTTCTGATTTGTGATTTAATCTCGATCG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5386077 TTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * *
5386112 TTTTCATTTTTTGAATCGTGGTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *** * *
5386147 TTTTTGTTTTCTGTCTCTTGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5386182 TTTTCATTTTTTGACTTATGGTTTAATTCCC-ATCAC
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATC-G
* *** * * *
5386218 TTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * *
5386252 TTTTCATTTTTCTGATTGGTGATTTAATCCTTG-TTG
1 TTTTCATTTTT-TGACTCATGATTTAATCC-CGATCG
* *** * *
5386288 TTTTCATTTTTTGACTCGTGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *
5386323 -TTTCATTATCTAAGA-TGC--GGTCTAATCCCTCA-CA
1 TTTTCATT-T-TTTGACT-CATGATTTAATCCC-GATCG
* * * **** *
5386357 TTTTCATTTTATGACTCGTGGTTT-ATTGTAAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * *
5386392 TTTTCATTTTCTGACTCAT-AGTTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * * *
5386427 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* ** * ** * *
5386463 TTTTCTTTTTTTGACTGGTGGTTTAATCTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * ** * *
5386498 TTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** ** **
5386533 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * ** *
5386568 TTTTTATTTTTTGGCTCATGGTTTAAT-CATAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * * ** * *
5386603 TTTTTATTTTTTGACTCGTGGTCTAATCGAGGTCTT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* * * *
5386639 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* ** * *
5386675 TTTTCTTTTTTTGA-T-GGGTAGTTTAATCTCAATCG
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
** * *
5386710 TTTTCATTTTTTGACTTGTGGTTTAATCTC-AGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * *
5386745 TCTTCGA-TTTTTGACTCATGATTTAGTCTCGATCT
1 TTTTC-ATTTTTTGACTCATGATTTAATCCCGATCG
* * * *** * *
5386780 TTTTTATTTTCTAACTCAT-AGTTTAATATGGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
** * * * *
5386815 TTTTCATTTTTTGACTCACAATTCAAACCCGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** *
5386850 TTTTCATTTTTTAACTCGTGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** * *
5386885 TTTT--TTGTTCTCTGACAT-GTGATTTAGTTTCGGTGG
1 TTTTCATT-TT-T-TGAC-TCATGATTTAATCCCGATCG
* * * *
5386921 TTTTGATTTTCTGACTCATGATTTATTCTCCG-TAG
1 TTTTCATTTTTTGACTCATGATTTAATC-CCGATCG
* * ** *
5386956 TTTTTGA-TTTTTGACAT-GTGATTTAATATCGATCA
1 -TTTTCATTTTTTGAC-TCATGATTTAATCCCGATCG
* ** * *
5386991 TTTTCATTTCTCTGACTCATGATTTAA-CGATGGTTG
1 TTTTCATTT-TTTGACTCATGATTTAATC-CCGATCG
* ** ** *
5387027 TTTTTCATTTTGTGACTTGTGATTTAATCTGGATCA
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5387063 TTTTCATTTTTTGACTCA-CAGTTTAATCCTGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * *
5387098 TTTTCATTTTTTGACTCATGGTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *** *
5387133 CTTTTTTTTTTTTGATTCGTGGTTTAATTTTGGTCG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* **
5387169 TTTTCATTTTTTGACTTACAATTTAATTCCC-ATCG
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* *** * *
5387204 CTTTT-GTTCCCTGACTCATGATTTAAT-CCTAGTCA
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * ** *
5387239 TTTTCATTTTTTTGATTCGTGATTTAATCTTTG-TTG
1 TTTTCA-TTTTTTGACTCATGATTTAATC-CCGATCG
* * *** * *
5387275 TTTTTATTTTCTGACTCATGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * ** ** ***
5387310 TTTTCATTATCTAAAACGCGGCCTAATCCC--TCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *
5387343 CATTTTCATTTTATGACTCATGGTTTATTCTC-AGTCA
1 --TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * *
5387380 TTTTCATTTTCTGACTCAT-AGTTTAATCTCAATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * * **
5387415 TTTTCATTTTCTAACCCATGGTTTAATCATGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * * * *
5387450 TTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** * ** * *
5387486 TTTCCATTTTTTTACTTGTGGTTTAATCTAGCTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** ** **
5387521 TTTTTATTTTATGACTCATGGCTTAATCAGGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5387556 TTTTCATTTTTTGACTCATGGTTTAAT-CATAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * ** * *
5387591 TTTTCATTTTTTGACTCGTGGTGTAATCGTGGTCCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGAT-CG
* * * *
5387627 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* * * *
5387663 TTTTCTTTTTTTGA-TGGGCA-G-TTTAATTCCAATCA
1 TTTTCATTTTTTGACT---CATGATTTAATCCCGATCG
* * * **
5387698 TTTTCATTTTCTGACTTATGGTTTAATCTTGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * ** * *
5387733 TTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5387768 TTTTCATTTTTTGACTCATGGTTTAATCCTCG-TAG
1 TTTTCATTTTTTGACTCATGATTTAATCC-CGATCG
* * * *
5387803 TTTTAATCTTCTGACTCACTG-TTTAATCCCGATCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGATCG
* * * **
5387838 ATTTCACTTTTTAACTCATGATTTAATTTCGATC-
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * ** *
5387872 TTTT-TTTCTTCTCTGACAT-GTGATTTAGTTTC-AGTGG
1 TTTTCATT-TT-T-TGAC-TCATGATTTAATCCCGA-TCG
* * * * *
5387909 TTTTGATTTTTTGACTCATGATTTATTCTCAATAG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5387944 TTTTCGA-TTTTTGACAT-GTGATTTAATATCGATCA
1 TTTTC-ATTTTTTGAC-TCATGATTTAATCCCGATCG
* * * *
5387979 TTTTCATTTCTCTGACTCATGATTTAATGACTG-TTG
1 TTTTCATTT-TTTGACTCATGATTTAAT-CCCGATCG
* * ** ** *
5388015 TTTTTCATTTTCTAACTTGTGATTTAATTTCGATTG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5388051 TTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * **
5388086 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTAT
1 TTTTCATTTTTTGACTCATGATTTAATC-CCGATCG
*** * *
5388122 TTTTC-TTTTTTGACTCATGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5388156 TTTTCATTTTTTGACTTATGGTTTAATTCCC-ATCG
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* *** * * *
5388191 CTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5388226 TTTTCATTTTTCTGATTCATGATTTAATCCTTG-TTG
1 TTTTCATTTTT-TGACTCATGATTTAATCC-CGATCG
* * * ** *** * *
5388262 TTTTTATTTTCTAACTTGTGATTTAATTTTGCTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*** * * * * *
5388297 TTTTCATTATCCAAGACGC--GGTCTAATATCTCG--CA
1 TTTTCATT-T-TTTGACTCATGAT-TTA-ATCCCGATCG
* * * * *
5388332 TTTTCATTTTATGACTCGTGATTTATTCTC-AGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * *
5388367 TTTTCATTTTCTGACTCAT-AGTTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* *
5388402 TTTTCATTTTCTGA-TCCAT-AGTTTAATCCTGATTCG
1 TTTTCATTTTTTGACT-CATGA-TTTAATCCCGA-TCG
** * * * *
5388438 TTTTTC-TTTTTTGACTGGTGGTTTAATCCTGGTTG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * ** * *
5388473 -TTTCTACTTTTTGACTTATGGTGTAATCTGGCTCA
1 TTTTC-ATTTTTTGACTCATGATTTAATCCCGATCG
* ** ** **
5388508 TTTTCATTTTCTGACTCATGGCTTAATCAGGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* **
5388543 TTTTCATTTTTTGACTCATGGTTTAAT-CATAGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * ** * *
5388578 TTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGAT-CG
* * ** * * *
5388614 TTTTCTTTTTTTTACTTGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* * *
5388650 TTTTCTTTTTTTGA-T-AGGTAGTTTAATCCCAATCG
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
* * *
5388685 TTTTCATTTTCTGACTTAT-AGTTTAATCCTGATCG
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* ** * ** * *
5388720 TTTTCATTTTCTGACTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5388755 TTTTCATTTTTTGACTCATGGTTTAATCCCCG-TTG
1 TTTTCATTTTTTGACTCATGATTTAAT-CCCGATCG
* * * * * *
5388790 CTTTCATCTTCTGACTCATGGTTTAATCGCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
***
5388825 TTTTCAGTTTTTTGACTTGC-TG-TTTAATCTTAATCG
1 TTTTCA-TTTTTTGAC-T-CATGATTTAATCCCGATCG
* * * ** *
5388861 TTCTTCATTTTTTTGACTTATGTTTTCATTACGATCA
1 TT-TTCA-TTTTTTGACTCATGATTTAATCCCGATCG
* *
5388898 TTTTCATTTTTTGACTCGTGATTTAAACCCGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * *
5388933 CATTCATTTTTTGACTCATGGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5388968 TTTT--TCTTTT---TCATTTTTTTAT--C-AT--
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * * *
5388993 TCTT-ATTTTCTAACTCGT-AGCTTAATTCC-AGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
** * ** *
5389027 TTTTCATTTCCTGACTCATGGTTTAAT-CTTATTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * ** * *
5389062 ATTT--TTTTCTGACTGGTGGTTTAATCCCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * **
5389095 TTTCCATTTTTTGACTCATGGTTTAAT-CTTAGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * * * ** * *
5389130 TTTCCATTTTTCGGCTCGTGCTTTAATCTAGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5389165 TTTTCTTTTTTTGACTCAATG-TTTAATCCC-ACTTG
1 TTTTCATTTTTTGACTC-ATGATTTAATCCCGA-TCG
* * * * *
5389200 TTTTCGTTTTCTGACTCGATGGA-TTAATCCAGGTTG
1 TTTTCATTTTTTGACTC-AT-GATTTAATCCCGATCG
* * *
5389236 TCTTTCATTTTTTAACTCGT-ACTTTAATCCC-AGTCA
1 T-TTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
* * * * * *
5389272 TTTTCGTTTCTTGACTCATGATTCAA-ACTGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * * *
5389306 CATTCATTTTCTAACTCATGGTTTAGTCCCGATCATTTT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC----G
* ** * * *
5389345 TTTTCATTTTTCGATCGTTTTCATTTTTTGA-CTC-ATGG
1 TTTTCATTTTTTGA-C----TCATGATTTAATCCCGATCG
* *
5389383 TTTAATCCCAATCATTTTCGTTTTTTGACTCAATG-TTTAATCTCGGTCG
1 -TT--T-----TCA------TTTTTTGACTC-ATGATTTAATCCCGATCG
* * * * *
5389432 TTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTCGGTCA
1 TTTTCATTTTT-TGA-CTCA-TGATTTAATCCCGATCG
* * * **
5389468 TTTTCATTTTTTAACTCGTGGTTTAATCCTTATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5389503 TTTTCATTTTTTGACT-AGTGATTTAAT-CCTAGTCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGA-TCG
* * * *
5389538 TTTT--TTATTTCTAACTCGTGATTTAATCTC-AGTCA
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGA-TCG
* * *
5389573 TTGTCATTTATTGACTCATGATTTAATCCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * ** *
5389608 TTTTCATTTCCTAACTCACGATTTAAACTTGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * ** *
5389643 TATTCATTTTTTAACTCGTGGTTTAATCCTGGCCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5389678 TTTTCATTTTTTGACTCATGGTTTAATCTC-AGTAG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
** * * *
5389713 TTTTCGGTTTTTGACTCATGATTTAGTCTCGATCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *** * *
5389748 TTTTTATTTTCTAACTCAT-AGTTTAATATGGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
** * *
5389783 TTTTCATTTTTTGACTCACAATTTAATCCCGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** *
5389818 TTTTCATTTTTTAACTCGTGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** *
5389853 TTTT--TTGTTCTCTGACAT-GTGATTTAGTTTCGATGG
1 TTTTCATT-TT-T-TGAC-TCATGATTTAATCCCGATCG
* * * * *
5389889 TTTTGATTTTCTGACTCATGATTTATTCTC-AGTAG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * *** *
5389924 TTTTTGA-TTTTTAACAT-GTGATTTAATATTGATCA
1 -TTTTCATTTTTTGAC-TCATGATTTAATCCCGATCG
* *** * *
5389959 TTTTCATTTCTCTGACTCATGATTTAATGATGGTTG
1 TTTTCATTT-TTTGACTCATGATTTAATCCCGATCG
** *
5389995 CTTTTCATTTTTTGACTTGTGATTTAATCTCGATCG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *
5390031 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * *
5390066 TTTTTGTTTTTTGACTCATGATTTAATCCTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * **
5390101 TTTTCATTTTTTTGATTCGTGATTTAATCCTTG-TTA
1 TTTTCA-TTTTTTGACTCATGATTTAATCC-CGATCG
*** * *
5390137 TTTTCATTTTTTGACTCATGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * *
5390172 TTTTCATTATCTAAGACGC--GATCTAATCCC--TCG
1 TTTTCATT-T-TTTGACTCATGATTTAATCCCGATCG
* * * * * * *
5390205 TATTTTCATTTTATGACTCGTGGTTTACTCTCAATCA
1 --TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5390242 TTTTCATTTTCTGACTCAT-AGTTTAATCTTGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * * *
5390277 TTTTCATTTTCTGACCCATGGTTTAATCCTGATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* * ** * * * *
5390313 TTTTCTTTTTTTCACTGGTGCTTTAAT-CCTAGCTT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
** * *
5390348 TTTTCATTTTTTGACT--TGTAGTTTAATCTGGCTCA
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
* * ** * * **
5390383 TTTTCATTTTCTGACTTATGGCTTAGTCAAC-ATTA
1 TTTTCATTTTTTGACTCATGATTTAATC-CCGATCG
* ** *
5390418 TTTTCATTTTTTGACTCATGGTTTAAT-CATAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * * ** * *
5390453 TTTTCATTTTTTAACTCGTGGTCTAATCGTGGTCCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGAT-CG
* * ** *
5390489 TTTTCATTTTTTGACTCGTGGTTTAATCCATATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** *
5390524 TTTTCTTTTTTTGATTGGT-AGTTTAATCCCAATCG
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* ** * ** * *
5390559 TTTTCATTTTCTGACTTGTGGTTTAATCATGGTCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * *** * *
5390594 TTTTCATTTTTTGACTTGTGGTTTAATATGGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*
5390629 TTTTCATTTTTTGACTCATGCTTTAATCCCTG-TCG
1 TTTTCATTTTTTGACTCATGATTTAATCCC-GATCG
* * * * ** * *
5390664 TTTTCATCTTTCGACTCACGGTTTAATTGCGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*** * *
5390699 TTTTCATTTTTTTGACTTGCGATTTAATCTCGGTCG
1 TTTTCA-TTTTTTGACTCATGATTTAATCCCGATCG
* * * **
5390735 TTCTTTATTTTTCGACTCGTG-TCTTAATCATGATCG
1 TT-TTCATTTTTTGACTCATGAT-TTAATCCCGATCG
* * *
5390771 TTTTCATTTCTTGACTCGTGATTTAA-ACCGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *
5390805 CATTCATTTTCTGACTCATGGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*
5390840 TTTT--TCTTTTTCACT--T--TTT--T----ATCG
1 TTTTCAT-TTTTTGACTCATGATTTAATCCCGATCG
* * * * * * * *
5390864 TTCTCATTTTCTAACTCGT-AGCTTAATTCCAATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
** * * * *
5390899 TTTTCATTTCCTGACTCATGGTTTAATCCTGTTCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* *** ** *
5390935 TTTTC-TTTTTCAGACAGGTGGGTTAATCCC-AGTCA
1 TTTTCATTTTT-TGACTCATGATTTAATCCCGA-TCG
* * * * **
5390970 TTTCCATTTTCTGGCTCATGGTTTAAT-CTTAGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * * * ** * *
5391005 TTTCCATTTTCTGGCTCGTGCTTTAATCTAGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5391040 ATTTC-TTTTTCTGACTCAATG-TTTAATCCC-ACTTG
1 TTTTCATTTTT-TGACTC-ATGATTTAATCCCGA-TCG
* * * ** * *
5391075 TTTTCATTTTCTGACTCGTGGTTTAATCGAGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5391110 TTTTTCATTTTTTAACTCGT-ACTTTAATCTCTG-TCA
1 -TTTTCATTTTTTGACTCATGA-TTTAATC-CCGATCG
* * * **
5391146 TTTTCATTTCTTGACTCATGATTCAAACTTG-TCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * * * * * *
5391180 CATTCATTTTCTAACTCGTGGTTTAGTCTCAATCATTTTT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-----G
** * ** *
5391220 TTTTCATTTTTTGATCGTTTTCATTTTCTGACTCGAGGTC-
1 TTTTCATTTTTTGA-C-TCATGATTTAAT--CCCGA--TCG
** * ** * * * **
5391260 TAATCCCAATCATTTTCGTTTTC-TGACTCAA---CGTTTAA
1 T--TTTC-AT--TTTTTG-ACTCATGATTTAATCCCG-ATCG
* * ** * * * *
5391298 TATCGATCGTTTTCTTTTTTCTAGCTAGTGGTTTAATCGCGGTCA
1 T-T--TTCATTT---TTTGACT--C-A-TGATTTAATCCCGATCG
* * **
5391343 TTTTCATTTTTTGACTCGTGGTTTAATCCTTATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * *
5391378 TTTTCATTTTTTGACT-AGTGATTTAATCTTGGTCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGATCG
* * *
5391413 TTTT--TTATTTATAACTCATGATTTAATCTC-AGTAG
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGA-TCG
* * * *
5391448 TTGTCATTTCTTGACTCATGATTTAATCCTGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *
5391483 TTTTCATTTCCTAACTCACGATTTAAACCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *
5391518 TATTCATTTTTTAACTCGTGGTTTAATCCTGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5391553 TTTTCATTTTTTGACTCATGGTTTAATCTCGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * *
5391588 TTTTCATTTTCTGACTCGCGGTTTAATCTCGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * * *
5391623 TTTTTATTTTCTAACTCAT-AGTTTAATACGGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
*
5391658 TTTTCATTTTTTGACTCAT-AGTTTAATCCCGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * ** * *
5391693 TTTTAATTTTTTGACTCGTGGTTTAATTTCGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * *** * *
5391728 TTTTTGTTTTCTGACTCACGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
***
5391763 TTTTCATTTTTTGACTTGCGATTTAATTCCC-ATCG
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* * ** * * * *
5391798 CTTTC-TGACTCATGATTCATGATTTAATCCTGGTCA
1 TTTTCAT--TTTTTGACTCATGATTTAATCCCGATCG
* * *
5391834 TTTTCATTTTTCATTTTGACT-AGTGATTTAATCCTGGTCA
1 TTTTCA---TT--TTTTGACTCA-TGATTTAATCCCGATCG
* * *
5391874 TTTT--TTATTTCTAACTCGTGATTTAATCTC-AGTCG
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGA-TCG
* * *
5391909 TTGTCATTTTTTGAC-CATGATTTAATCCTGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * * *
5391943 TTTTCATTTCCTAACTCACGATTTAAACCCAATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * *
5391978 TATTCATTTTTTGACTCGTGGTTTAATTCTGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *
5392013 TTTTCA-TTTTTGACTTATGGTTTAATCCTGTTCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
** ** * *
5392048 TTTTC-TTTTTCTGACTGGTGGGTTAATCTCGATCA
1 TTTTCATTTTT-TGACTCATGATTTAATCCCGATCG
* * **
5392083 TTTTCATTTTCTGACTCATGGTTTAAT-CTTAGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * ** * *
5392118 TTTCCATTTTTTGGCTCATGCTTTAATCTAGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*
5392153 TTTTC-TTTTTCTGACTCAATG-TTTAATCCC-ACTTG
1 TTTTCATTTTT-TGACTC-ATGATTTAATCCCGA-TCG
** * * * ** * *
5392188 TTTTTGTTTTTTGACTCGTGGTCTAATCTAGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * **
5392223 TTTTTCATTTTTTAACTCGT-ACTTTAAT-CCTAGTTA
1 -TTTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
* * * * *
5392259 TTTTCATTTCTTGACTCATGATTCAA-ACTGTTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * * *
5392293 CATTCTTTTTTTAACTCGTGGTTTAGTCCCGATCATTTTTCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCG---A----TC----G
* ** * **
5392339 TTTTCATTTTCTGACTCGCGGTTTAATCCTAATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * *
5392374 TTTTTGTTTTCTGACTCAATG-TTTAATCTCGATCG
1 TTTTCATTTTTTGACTC-ATGATTTAATCCCGATCG
* * * * *
5392409 TTTTCCTTTTTCT-AGC-AAGTGGTTTAATCTCGATCA
1 TTTTCATTTTT-TGA-CTCA-TGATTTAATCCCGATCG
* * ** * **
5392445 TTTTCATTTTCTAACTTGTGGTTTAATCCTTATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5392480 TTTTCACTTTTTGACT-AGTGATTTAAT-CCTAGTCA
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGA-TCG
* * * *
5392515 TTTT--TTATTTCTAACTCGTGATTTAATCTCAATCG
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGATCG
* * ** *
5392550 TTGTCATTTCTTGACTCATGATTTAATCTTGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *
5392585 TTTTCATTTCGTAACTCACGATTTAAACCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5392620 TATTCATTTTTTGACTCGTGGTTTAATCCTGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5392655 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** * * **
5392690 TTTTTATTTTCTGACTCGCGGTTTAATCTCGATTT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *** * *
5392725 TTTTTATTTTTTAACTCGT-AGTTTACTATGGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * *
5392760 TTTTCATTTTTTGACTCA-CAGCTTAATCCTGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* * * * * *
5392795 TTTTTATTTTTTGACTCGTGGTTT-ATCTCGGTTCC
1 TTTTCATTTTTTGACTCATGATTTAATC-CCGATCG
* * *** * *
5392830 TTTT-GTTTTCTGACTCATGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5392864 TTTTCATTTTTTGACTTACGGTTTAATTCCC-ATCG
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* *** * * *
5392899 CTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * **
5392934 TTTTCATTTTTCTGATTCGTGATTTAATCCTTG-TTT
1 TTTTCATTTTT-TGACTCATGATTTAATCC-CGATCG
* *** * *
5392970 TTTTCATTTTTTGACTCGTGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * *
5393005 TTTTCATTATCTAAGA-TGC--GGTCTAATCCC--TCG
1 TTTTCATT-T-TTTGACT-CATGATTTAATCCCGATCG
* * * * * *
5393038 CATTTTCATTTTATGACTCGTGGTTTATTCTC-AGTCA
1 --TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * *
5393075 TTTTCATTTTCTGACTCAT-AGTTTAA-CCTTGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCC-CGATCG
5393110 TTTTCATTTTTTGA-TCCATGATTTAATCCCGATCG
1 TTTTCATTTTTTGACT-CATGATTTAATCCCGATCG
* ** * * * *
5393145 TTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * ** * *
5393181 -TTTCTAGTTTTTGACTTGTGGTTTAATCTAGACCA
1 TTTTC-ATTTTTTGACTCATGATTTAATCCCGATCG
* * ** **
5393216 TTTTCATTTTCTGACTCATGACTTAATCAGGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** **
5393251 TTTTCATTTTTTGACTCATGGCTTAATCATAGTAT--
1 TTTTCATTTTTTGACTCATGATTTAATC-CCG-ATCG
* ** * * *
5393286 TTTTAATTTTTTGACTTGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* ** *
5393322 TTTTCTTTTTTTGA-T-GGGTACTTTAATCCCAATCG
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
*
5393357 TTTTCATTTTCTGACT--TGTAGTTTAATCCCGATCG
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
* ** * * **
5393392 TTTTCATTTTTTGATTTGTGGTTTAAT-CTGGGCTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
*
5393427 TTCTCATTTTTTGACTCATTG-TTTAATCCCCG-TCG
1 TTTTCATTTTTTGACTCA-TGATTTAAT-CCCGATCG
* * * * * * *
5393462 TTTTCATCTTCTGACTCACGGTTTAATCGCGGTCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
** *** * * *
5393498 TTTTGTTTTTTTGACTTGCGGTTTAATCTCGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * *
5393533 TTCTTCATTTTTTGACTTGTGTTTTAATCACAATCG
1 TT-TTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5393569 TTTTCATTTCTTGACT-AGTGATTTAAACCCGATCG
1 TTTTCATTTTTTGACTCA-TGATTTAATCCCGATCG
** * * * * *
5393604 CATTCATTTTCTGACTAATGGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* **
5393639 TTTT--TCTTTT---TCAT--TTT--T--TTATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** * * * * *
5393663 TTCTCATTTCCTAACTCGT-AGCTTAATTCC-AGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
** * * * *
5393698 TTTTCATTTCCTGACTCATGGTTTAATCCTGTTCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* * *
5393734 TTTTC-TTTTTCTGACTGATGGTTTAATCCC-AGTCA
1 TTTTCATTTTT-TGACTCATGATTTAATCCCGA-TCG
* * ** *
5393769 TTTCCATTTTTTGACTCATGGTTTAAT-CTTAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * ** *
5393804 TTTCCATTTTCTTG-CT-AGTGCTTTAGT-CTAAGTCA
1 TTTTCATTTT-TTGACTCA-TGATTTAATCCCGA-TCG
*
5393839 TTTTC-TTTTTCTGACTCAATG-TTTAATCCC-ACTTG
1 TTTTCATTTTT-TGACTC-ATGATTTAATCCCGA-TCG
* * * * * *
5393874 TTTTCGTTTTCTAACTCATGGTTTAATCCATG-TTG
1 TTTTCATTTTTTGACTCATGATTTAATCC-CGATCG
* * * *
5393909 TTTTTCATTTTTTAACTCGT-ACTTTAATCTC-AGTCA
1 -TTTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
* * * * **
5393945 TTTTCATTTCTTAACTCATGATTCAAACTAG-TCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * * * *
5393979 CATTCATTTTCTAACTCGTGGTTTAGTCTCGATC-
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
*
5394013 -ATT--TTTTTT---TCAT--TTT--T--CGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * *
5394036 TTTTCATTTTCTGACTCGTGGTTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCAT-GATTTAATCCCGATCG
* * * *
5394072 TTTTCATTTTCTGACTCAATG-TTTAATCTCGGTCA
1 TTTTCATTTTTTGACTC-ATGATTTAATCCCGATCG
* * **
5394107 TTTTCATTTTTTGACTCGTGGTTTAATCCTTATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** ** * *
5394142 TTTTCATTTTTTGACTGGTGATTTAATCTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* *
5394177 TTTT--TTATTTATGACTCGTGATTTAATCTC-AGTCG
1 TTTTCATT-TTT-TGACTCATGATTTAATCCCGA-TCG
* * *
5394212 TTGTCATTTTTTGACTCATGATTTAATCCTGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * *
5394247 TTTTAATTTCTTAACTCGTGATTTAAACCCGATTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * *
5394282 TATTCATTTTTTGACTCGTGGTTTAATCCTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5394317 GTTTCATTTTTTGACTCATGGTTTAATCTCGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5394352 TTTTCATTTTCTGACTCATGATTTAATCTCGATCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * * * *
5394387 TTTTTATTTTCTAACTCGT-AGTTTAATACGGGTCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* **
5394422 TTTTCATTTTTTGACTCAT-AGTTTAATCTC-AGTTA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGA-TCG
* ** ** *
5394457 TTTTCATTTTTTAACTTGTGATTTAATTTCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5394492 TTTT--TTGTTCTCTGACAT-ATGATTTAGTTTCGGT-G
1 TTTTCATT-TT-T-TGAC-TCATGATTTAATCCCGATCG
* * * * * *
5394527 TTTTTGATTTTCTGACTCATCATTTATTCTC-AGTAG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* ** *
5394563 TTTTCGA-TTTTTGACAT-GTGATTTAATATCGATCA
1 TTTTC-ATTTTTTGAC-TCATGATTTAATCCCGATCG
* *** *
5394598 TTTTCATTTCTTCGACTCATGATTTAATGATGATTG
1 TTTTCATTT-TTTGACTCATGATTTAATCCCGATCG
** **
5394634 TTTTTCATTTTTTGACTTGTGATTTAATCTTGATCG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5394670 TTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5394705 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTC-
1 TTTTCATTTTTTGACTCATGATTTAATC-CCGATCG
** * *** * *
5394740 TTTTTGTTTTCTGACTCATGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5394775 TTTT--TTTTTT-ACTTACGGTTTAATTCCC-ATCG
1 TTTTCATTTTTTGACTCATGATTTAA-TCCCGATCG
* *** ** * *
5394807 CTTTT-AATCCCTGACTCATGATTTAATCTTGGTCA
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5394842 TTTTCATTTTTTTGATTCATGATTTAATCCTTG-TTG
1 TTTTCA-TTTTTTGACTCATGATTTAATCC-CGATCG
* * *** * *
5394878 TTTTCATTTTCTGACTCGTGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * ** * * *
5394913 TTTTCATTATCTCAGACGTGGTCTAATCCTTCGCAT--
1 TTTTCATTTTTTGACTCATGATTTAATCC--CG-ATCG
* * * * * * * *
5394949 TTTT-ATTTTATGGCTCGTGTTTTATTTCAG-TCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5394982 TTTTCATTTTCTGACTCAT-AGTTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGA-TTTAATCCCGATCG
* **
5395017 TTTTCATTTTCTGAC-CAAT-AGTTTAATCATGATCG
1 TTTTCATTTTTTGACTC-ATGA-TTTAATCCCGATCG
* * ** * * *
5395052 TTTTTCTTTTTTTGATTGGTGGTTTAAT-CCTAGTTG
1 -TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
** * ** * *
5395088 -TTTCTATTTTTTGACTTGTGGTTTAATCTGGCTCA
1 TTTTC-ATTTTTTGACTCATGATTTAATCCCGATCG
** ** **
5395123 TTTTCATTTTTTGACTCATGGCTTAATCAGGATTA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* ** *
5395158 TTTTCATTTTTTGACTCATGGTTTAAT-CATAGTCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGA-TCG
* * * *
5395193 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCAT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATC-G
* ** ** *
5395229 TTTTCTTTTTTTGA-T-GGGTAGTTTAATCCTAATTG
1 TTTTCATTTTTTGACTCATG-A-TTTAATCCCGATCG
* ** * * *
5395264 TTTTCATTTTCTGACTTGTGGTTTAATCCTGGTCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * ** * ** * *
5395299 TTTTCATTTTCTGATTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5395334 TTCTCATTTTTTGACTCATGGTTTAATCCCCG-TCA
1 TTTTCATTTTTTGACTCATGATTTAAT-CCCGATCG
* ** * * *
5395369 TTTTCATCTTCCGACTCATGGTTTAATCGCGATCA
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
* * * * * *
5395404 TTTTCATTTTTTTAACTTACGGTTTAATCTCGGTCG
1 TTTTCA-TTTTTTGACTCATGATTTAATCCCGATCG
* * * *
5395440 TTCTTCATTTTTTGACTCGTGTTTTCATCACGATCG
1 TT-TTCATTTTTTGACTCATGATTTAATCCCGATCG
* * *
5395476 TTTTCATTTCTTGACTCGTGATTTAAACCCGATCG
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
** * * * *
5395511 CATTCATTTTCTGACTCATGGTTTAATCCCAATCT
1 TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
5395546 TTTT
1 TTTT
5395550 TCTTTTTCAT
Statistics
Matches: 7337, Mismatches: 2063, Indels: 1202
0.69 0.19 0.11
Matches are distributed among these distances:
22 5 0.00
24 15 0.00
25 10 0.00
26 17 0.00
27 3 0.00
28 8 0.00
29 15 0.00
30 15 0.00
31 11 0.00
32 17 0.00
33 114 0.02
34 458 0.06
35 4817 0.66
36 1455 0.20
37 189 0.03
38 17 0.00
39 22 0.00
40 40 0.01
41 4 0.00
42 17 0.00
43 13 0.00
44 13 0.00
45 8 0.00
46 31 0.00
47 6 0.00
48 7 0.00
49 2 0.00
51 1 0.00
52 7 0.00
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGATTTAATCCCGATCG
Found at i:5385803 original size:105 final size:105
Alignment explanation
Indices: 5385513--5410387 Score: 2594
Period size: 105 Copynumber: 235.9 Consensus size: 105
5385503 AATCTCGTCA
* * *
5385513 TTTTCATTTTTAATAACTCGTGGTTTAATCCTT-ATCGTTTTCATTTT-TGACT-AGTGATTTAA
1 TTTTCATTTTT--TGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCA-TGATTTAA
* * * * * * *
5385575 TC-CTAGTCATTTTTTA-TTTCTAACTCGTGATTTAAT-CTCAGTCA
62 TCTCGA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * ** * * * * * *
5385619 TTGTCATTTATTGACTCATGATTTAATCCCGATTGTTTTCATTTCCTAACTCATGATTTAAACCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
*
5385684 GAT-TGTATTCATTTTTTGACTCGTGGTTTAATCCTGATCG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
*
5385724 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCACGATTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * * *
5385789 GATCTTTTTTATTTTCTAACTCATAGTGTAATACAGATCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** ** * * * * * *
5385829 TTTTCATTTTTTGACTCACAGTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * * * *
5385894 GGTTATTTTTCCTTCTCTGACAT-GTGATTTAGT-TTCGGTGG
66 -GATCTTTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GATCG
* * * * ** * * * *
5385935 TTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGATTTT-TGACAT-GTGATTTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGAC-TCATGATTTAATC
* * * * * *
5385998 TCGATCATTTTCATTTCTTTGACTCATGATTTAATGGC-GGTTG
64 TCGATCTTTTTCATTT-TTTGACTCGTGGTTTAAT-CCTGATCG
* * ** * * * * * *
5386041 TTTTTCATTTTCTGATTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATC-
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * *
5386105 CTGATCATTTTCATTTTTTGAATCGTGGTTTAAT-CTCGGTTG
65 C-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
** * * * * * * * * *
5386147 TTTTTGTTTTCTGTCTCTTGATTTAATTTTGGTCATTTTCATTTTTTGACTTATGGTTTAAT-TC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT-
* * * *** * * * *
5386211 CCATCACTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
65 CGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * * * *
5386252 TTTTCATTTTTCTGATTGGTGATTTAATCCTT-GTTGTTTTCATTTTTTGACTCGTGATTTAATT
1 TTTTCATTTTT-TGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * ** * * * *
5386316 TTGGT-TGTTTCATTATCTAAGA-T-GCGGTCTAATCCCTCA-CA
64 TCGATCTTTTTCATT-T-TTTGACTCGTGGTTTAAT-CCTGATCG
* * * * ** *
5386357 TTTTCATTTTATGACTCGTGGTTTATTGTAAGTCATTTTCATTTTCTGACTCAT-AGTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATCT
* * * * *
5386421 CGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCAT
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* ** * * * ** * *
5386463 TTTTCTTTTTTTGACTGGTGGTTTAATCTTGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * ** **
5386528 GCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATTA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * * * * **
5386568 TTTTTATTTTTTGGCTCATGGTTTAATCATAGTCATTTTTATTTTTTGACTCGTGGTCTAATCGA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5386633 GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCAT
66 GATC-TTTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATC-G
* ** * *** * ** *
5386675 TTTTCTTTTTTTGA-TGGGTAGTTTAATCTCAATCGTTTTCATTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACT-CATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * *
5386739 C-AGTCGTCTTCGA-TTTTTGACTCATGATTTAGT-CTCGATCT
65 CGA-TCTTTTTC-ATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * ** * * *
5386780 TTTTTATTTTCTAACTCATAGTTTAATATGGGTCATTTTCATTTTTTGACTCACAATTCAAACCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * *
5386845 GGTCATTTTCATTTTTTAACTCGTGATTTAAT-TTCGATCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * *
5386885 TTTT--TTGTTCTCTGA--CATGTGATTTAGT-TTCGGTGGTTTTGATTTTCTGACTCATGATTT
1 TTTTCATT-TT-T-TGACTCATG-G-TTTAATCTT-GGTCGTTTTCATTTTCTGACTCATGATTT
* * * * * *
5386945 ATTCTCCG-TAGTTTTTGA-TTTTTGACAT-GTGATTTAAT-ATCGATCA
60 AATCT-CGAT-CTTTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GATCG
* * * * * **
5386991 TTTTCATTTCTCTGACTCATGATTTAA-CGATGGTTGTTTTTCATTTTGTGACTTGTGATTTAAT
1 TTTTCATTT-TTTGACTCATGGTTTAATC-TTGGTCG-TTTTCATTTTCTGACTCATGATTTAAT
* * *** *
5387055 CTGGATCATTTTCATTTTTTGACTCACAGTTTAATCCTGATCA
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * *
5387098 TTTTCATTTTTTGACTCATGGTTTAATCTCGGTTGCTTTTTTTTTTTTGATTCGTGGTTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATCT
* * * ***** *
5387163 TGGTCGTTTTCATTTTTTGACTTACAATTTAATTCC-CATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAA-TCCTGATCG
* *** * * * * * * *
5387204 CTTTT-GTTCCCTGACTCATGATTTAATCCTAGTCATTTTCATTTTTTTGATTCGTGATTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAATC
* * * * * * ** * *
5387268 TTTGTTGTTTTT-ATTTTCTGACTCATGATTTAATTTTGGTTG
64 -TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * ** ** ** * * * * * *
5387310 TTTTCATTATCTAAAACGCGGCCTAATCCCTCG-CATTTTCATTTTATGACTCATGGTTTATTCT
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * *
5387374 C-AGTCATTTTCATTTTCTGACTCATAGTTTAAT-CTCAATCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * ** *
5387415 TTTTCATTTTCTAACCCATGGTTTAATCATGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATCT
* * * * * *
5387479 CTGGT-TGTTTCCATTTTTTTACTTGTGGTTTAAT-CTAGCTCA
65 C-GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * ** * *
5387521 TTTTTATTTTATGACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC-
* * * * * *
5387585 TAG-TCATTTTCATTTTTTGACTCGTGGTGTAATCGTGGTCCT
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGAT-CG
* * * * * *
5387627 TTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGA-TGGGCA-G-TTTA
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTC-GTTTTCATTTTCTGACT---CATGATTTA
* * * ** *
5387688 AT-TCCAATCATTTTCATTTTCTGACTTATGGTTTAATCTTGATCG
61 ATCT-CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * *
5387733 TTTTCATTTTTTGACTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAAT-CT
** * * * * * *
5387798 CG-TAGTTTTAATCTTCTGACTCACT-GTTTAATCCCGATCA
65 CGATCTTTTTCATTTTTTGACTC-GTGGTTTAATCCTGATCG
* * * * * * * * *
5387838 ATTTCACTTTTTAACTCATGATTTAAT-TTCGATCTTTTTTTC-TTCTCTGACAT-GTGATTTAG
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTC--GTTTTCATTTTCTGAC-TCATGATTTAA
* ** * * * * * *
5387900 TTTC-AGTGGTTTTGATTTTTTGACTCATGATTT-ATTCTCAATAG
62 TCTCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * *
5387944 TTTTCGA-TTTTTGA--CATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAA
1 TTTTC-ATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTT-TCTGACTCATGATTTAA
* * * * * * * *
5388006 TGACT-GTTGTTTTTCATTTTCTAACTTGTGATTTAAT-TTCGATTG
62 T--CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * *
5388051 TTTTCATTTTTTGACTCACGGTTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * ** * *
5388116 GGTTATTTTTC-TTTTTTGACTCATGATTTAATTTTGGTCA
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* *** * **
5388156 TTTTCATTTTTTGACTTATGGTTTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * * * *
5388219 -CTGGTCATTTTCATTTTTCTGATTCATGATTTAATCCTTG-TTG
64 TC-GATCTTTTTCATTTTT-TGACTCGTGGTTTAATCC-TGATCG
* * * ** * * * * * * * * *
5388262 TTTTTATTTTCTAACTTGTGATTTAATTTTGCTTGTTTTCATTATCCAAGACGC--GGTCTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATT-TTC-TGACTCATGAT-TTA-A
* * * * * *
5388325 TCTCG--CATTTTCATTTTATGACTCGTGATTT-ATTCTCAGTCA
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * *
5388367 TTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGA-TCCAT-AGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACT-CATGA-TTTAATC
* * *
5388430 -CTGATTCGTTTTTC-TTTTTTGACTGGTGGTTTAATCCTGGTTG
64 TC-GA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * **
5388473 -TTTCTACTTTTTGACTTATGGTGTAATC-TGGCTCATTTTCATTTTCTGACTCATGGCTTAATC
1 TTTTC-ATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC
** * *
5388536 AGGAT-TATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCG
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * ** * *
5388578 TTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCCTTTTTCTTTTTTTTACTTGTGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGT-CGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * **
5388643 CTATCATTTTTCTTTTTTTGA-TAGGTAGTTTAATCCCAATCG
65 CGATC-TTTTTCATTTTTTGACT-CGTGGTTTAATCCTGATCG
* * * * * ** * *
5388685 TTTTCATTTTCTGACTTATAGTTTAATCCTGATCGTTTTCATTTTCTGACTTGTGGTTTAATCTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5388750 GGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCCCG-TTG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* * * ** * * *
5388790 CTTTCATCTTCTGACTCATGGTTTAATCGCGATCATTTTCAGTTTTTTGACTTGC-TG-TTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGAC-T-CATGATTTAAT
** * ** * * * *
5388853 CTTAATCGTTCTTCATTTTTTTGACTTATGTTTTCATTAC-GATCA
63 CTCGATC-TTTTTCA-TTTTTTGACTCGTGGTTT-AATCCTGATCG
* * * ** * ** * * *
5388898 TTTTCATTTTTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5388963 AATCATTTTTC--TTTTTCA-T--T--TTT--T--T-ATCA
66 GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * ** * * *
5388992 TTCTT-ATTTTCTAACTCGTAGCTTAAT-TCCAGTCATTTTCATTTCCTGACTCATGGTTTAATC
1 TT-TTCATTTTTTGACTCATGGTTTAATCT-TGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* ** * * * *
5389055 T-TATTCAATTT--TTTTCTGACTGGTGGTTTAATCCCGATCA
64 TCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * *
5389095 TTTCCATTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTT-TCGGCTCGTGCTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCT-GACTCATGATTTAATCT
* * * * * * *
5389159 AGGTCATTTTCTTTTTTTGACTCAAT-GTTTAATCC-CACTTG
65 CGATCTTTTTCATTTTTTGACTC-GTGGTTTAATCCTGA-TCG
* * * ** * * * *
5389200 TTTTCGTTTTCTGACTCGATGGATTAATCCAGGTTGTCTTTCATTTTTTAACTCGT-ACTTTAAT
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTCGT-TTTCATTTTCTGACTCATGA-TTTAAT
* * * * * * * * *
5389264 C-CCAGTCATTTTCGTTTCTTGACTCATGATTCAA-ACTGGTCG
63 CTCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * * * *
5389306 CATTCATTTTCTAACTCATGGTTTAGTC----CCG--ATCATTTT-T---T-TTCATTT--T-TC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * ** *
5389357 GATCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * *
5389397 TTTTCGTTTTTTGACTCAAT-GTTTAATCTCGGTCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAA
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTCGTTTT-CATTTTCTGA-CTCA-TGATTTAA
* * * *
5389459 TCTCGGTCATTTTCATTTTTTAACTCGTGGTTTAATCCTTATCG
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * *
5389503 TTTTCATTTTTTGACT-AGTGATTTAATCCTAGTCATTTT-TTATTTCTAACTCGTGATTTAATC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCAT-TTTCTGACTCATGATTTAATC
* * * * * * *
5389566 TC-AGTCATTGTCATTTATTGACTCATGATTTAATCCCGATTG
64 TCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * * * * * * * *
5389608 TTTTCATTTCCTAACTCACGATTTAAACTTGATTGTATTCATTTTTTAACTCGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
** * * * *
5389672 TGGCCATTTTCATTTTTTGACTCATGGTTTAAT-CTCAGTAG
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
** * * * * * * * *
5389713 TTTTCGGTTTTTGACTCATGATTTAGTCTCGATCTTTTTTATTTTCTAACTCAT-AGTTTAATAT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATCT
* * * **** * * *
5389777 GGGTCATTTTCATTTTTTGACTCACAATTTAATCCCGGTCA
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * *
5389818 TTTTCATTTTTTAACTCGTGATTTAAT-TTCGATCATTTT-TTGTTCTCTGACAT-GTGATTTAG
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTCGTTTTCAT-TT-TCTGAC-TCATGATTTAA
* ** * * * * * * *
5389880 TTTCGATGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAGTAG
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * *
5389924 TTTTTGA-TTTTT-A-ACATGTGATTTAATATTGATCATTTTCATTTCTCTGACTCATGATTTAA
1 -TTTTCATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTT-TCTGACTCATGATTTAA
* * * * *
5389986 TGATGGTTGC-TTTTCATTTTTTGACTTGTGATTTAAT-CTCGATCG
62 T-CTCGAT-CTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * ** *
5390031 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTGTTTTTTGACTCATGATTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * **
5390095 TGGTCATTTTCATTTTTTTGATTCGTGATTTAATCCTTG-TTA
66 -GATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCC-TGATCG
* * * * * *
5390137 TTTTCATTTTTTGACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GATCTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCT--GACTCATGATTTAAT-
* * * * *
5390200 CCTCG-T-ATTTTCATTTTATGACTCGTGGTTTACT-CTCAATCA
63 -CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * *
5390242 TTTTCATTTTCTGACTCATAGTTTAATCTTGATCATTTTCATTTTCTGACCCATGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * *
5390306 TGATCATTTTTCTTTTTTTCACTGGTGCTTTAATCCT-AGCTT
66 -GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
** * * * ** *
5390348 TTTTCATTTTTTGACTTGTAGTTTAATC-TGGCTCATTTTCATTTTCTGACTTATGGCTTAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC-
* * * *
5390412 AC-AT-TATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCA
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * *
5390453 TTTTCATTTTTTAACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGT-CGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * **
5390517 CATATCATTTTCTTTTTTTGATTGGTAGTTTAATCCCAATCG
65 C-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * * ** * * *
5390559 TTTTCATTTTCTGACTTGTGGTTTAATCATGGTCTTTTTCATTTTTTGACTTGTGGTTTAATATG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5390624 GGT-TGTTTTCATTTTTTGACTCATGCTTTAATCCCTG-TCG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* * * * * * ***
5390664 TTTTCATCTTTCGACTCACGGTTTAAT-TGCGGTCATTTTCATTTTTTTGACTTGCGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCGTTTTCA-TTTTCTGACTCATGATTTAATC
* * *
5390728 TCGGTCGTTCTTT-ATTTTTCGACTCGT-GTCTTAATCATGATCG
64 TCGATC-TT-TTTCATTTTTTGACTCGTGGT-TTAATCCTGATCG
* * * * * * ** * *
5390771 TTTTCATTTCTTGACTCGTGATTTAAAC-CGATCGCATTCATTTTCTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5390835 AATCATTTTTC--TTTTT--CAC-T--TTT--T--T-ATCG
66 GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * *** * * *
5390864 TTCTCATTTTCTAACTCGTAGCTTAAT-TCCAATCATTTTCATTTCCTGACTCATGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * ** * * *
5390927 CTGTTCATTTTTC-TTTTTCAGACAGGTGGGTTAATCC-CAGTCA
65 C-GATC-TTTTTCATTTTT-TGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * * *
5390970 TTTCCATTTTCTGGCTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* ** * * *
5391035 GGTCAATTTC-TTTTTCTGACTCAAT-GTTTAATCC-CACTTG
66 GATCTTTTTCATTTTT-TGACTC-GTGGTTTAATCCTGA-TCG
* * ** * * * *
5391075 TTTTCATTTTCTGACTCGTGGTTTAATCGAGGTTGTTTTTCATTTTTTAACTCGT-ACTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGA-TTTAATC
* * * * * * *
5391139 TCTG-TCATTTTCATTTCTTGACTCATGATTCAAACTTG-TCG
64 TC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * *** *
5391180 CATTCATTTTCTAACTCGTGGTTTAGTCTCAATC-ATTT--TTTT-T---TCAT--TTT--T-T-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * ** *
5391232 GATCGTTTTCATTTTCTGACTCGAGGTCTAATCCCAATCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * *
5391272 TTTTCGTTTTCTGACTCAACGTTTAATATCGATCGTTTTCTTTTTTCT-AGCT-AGTGGTTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTC-ATTTTCTGA-CTCA-TGATTTAAT
* * * *
5391335 CGCGGTCATTTTCATTTTTTGACTCGTGGTTTAATCCTTATCG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * *
5391378 TTTTCATTTTTTGACT-AGTGATTTAATCTTGGTCATTTT-TTATTTATAACTCATGATTTAATC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCAT-TTTCTGACTCATGATTTAATC
** * * * * *
5391441 TC-AGTAGTTGTCATTTCTTGACTCATGATTTAATCCTGATTG
64 TCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * ** * * * * * * *
5391483 TTTTCATTTCCTAACTCACGATTTAAACCCGATTGTATTCATTTTTTAACTCGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5391547 TGATCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGGTCG
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* ** * * * *
5391588 TTTTCATTTTCTGACTCGCGGTTTAATCTCGATCGTTTTTATTTTCTAACTCAT-AGTTTAATAC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAAT-C
* * * * * * *
5391652 -GGGTCATTTTCATTTTTTGACTCATAGTTTAATCCCGATCA
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * ** * *
5391693 TTTTAATTTTTTGACTCGTGGTTTAAT-TTCGGTTGTTTTTGTTTTCTGACTCACGATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * *
5391757 TGGTCATTTTCATTTTTTGACTTGCGATTTAATTCC-CATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAA-TCCTGATCG
* * ** * * * *
5391798 CTTTC-TGACTCATGATTCATGATTTAATCCTGGTCATTTTCATTTTTCATTTTGACT-AGTGAT
1 TTTTCAT--TTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTC----TGACTCA-TGAT
* * * * * *
5391861 TTAATC-CTGGTCATTTTTTA-TTTCTAACTCGTGATTTAAT-CTCAGTCG
58 TTAATCTC-GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * * * *
5391909 TTGTCATTTTTTGAC-CATGATTTAATCCTGATTGTTTTCATTTCCTAACTCACGATTTAAACCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5391973 AAT-TGTATTCATTTTTTGACTCGTGGTTTAATTCTGGTCG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * ** **
5392013 TTTTCA-TTTTTGACTTATGGTTTAATCCTGTTCATTTTTCTTTTTCTGACTGGTGGGTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTTCTGACTCATGATTTAATCT
* * * *
5392077 CGATCATTTTCATTTTCTGACTCATGGTTTAAT-CTTAGTCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * *
5392118 TTTCCATTTTTTGGCTCATGCTTTAATCTAGGTCATTTTCTTTTTCTGACTCAATG-TTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTC-ATGATTTAATCT
* ** * * *
5392181 CCA-CTTGTTTTTGTTTTTTGACTCGTGGTCTAAT-CTAGGTTG
65 CGATC-T-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * ** * * ** * *
5392223 TTTTTCATTTTTTAACTCGTACTTTAATCCTAGTTATTTTCA-TTTCTTGACTCATGATTCAAAC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATC
* *** * * * *
5392287 T-GTTCGCATTCTTTTTTTAACTCGTGGTTTAGTCCCGATCATTTTTCGATTG
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTA------ATC----CT-GATCG
* ** * ** **
5392339 TTTTCATTTTCTGACTCGCGGTTTAATCCTAATCGTTTTTGTTTTCTGACTCAATG-TTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTC-ATGATTTAATCT
* * ** *
5392403 CGATCGTTTTCCTTTTTCT-AGCAAGTGGTTTAAT-CTCGATCA
65 CGATCTTTTTCATTTTT-TGA-CTCGTGGTTTAATCCT-GATCG
* * ** *
5392445 TTTTCATTTTCTAACTTGTGGTTTAATCCTT-ATCGTTTTCACTTTT-TGACT-AGTGATTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCA-TTTTCTGACTCA-TGATTTAAT
* * * * * *
5392507 C-CTAGTCATTTTTTA-TTTCTAACTCGTGATTTAAT-CTCAATCG
63 CTCGA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * *
5392550 TTGTCATTTCTTGACTCATGATTTAATCTTGATTGTTTTCA-TTTCGTAACTCACGATTTAAACC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATCT
*
5392614 CGAT-TGTATTCATTTTTTGACTCGTGGTTTAATCCTGATCG
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** *
5392655 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTTATTTTCTGACTCGCGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * * *
5392720 GATTTTTTTTATTTTTTAACTCGTAGTTTACT-ATGGGTCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
** * * * * * * * *
5392760 TTTTCATTTTTTGACTCACAGCTTAATCCTGATCATTTTTATTTTTTGACTCGTGGTTT-ATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * * ** * *
5392824 GGTTCCTTTT-GTTTTCTGACTCATGATTTAATTTTGGTCA
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * *** * **
5392864 TTTTCATTTTTTGACTTACGGTTTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * * **
5392927 -CTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTG-TTT
64 TC-GATCTTTTTCATTTTT-TGACTCGTGGTTTAATCC-TGATCG
* * * * * * *
5392970 TTTTCATTTTTTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGA-TGC--GGTCTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCT--GACT-CATGATTTAAT
* * * * *
5393032 CCCTCG--CATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCA
63 --CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5393075 TTTTCATTTTCTGACTCATAGTTTAACCTTGATCATTTTCATTTTTTGA-TCCATGATTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACT-CATGATTTAATCT
* * * *
5393139 CGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
65 CGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * ** * * *
5393181 -TTTCTAGTTTTTGACTTGTGGTTTAATCTAGACCATTTTCATTTTCTGACTCATGACTTAATCA
1 TTTTC-ATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * *
5393245 GGAT-TATTTTCATTTTTTGACTCATGGCTTAATCATAGTAT--
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-G-ATCG
* ** * * * * * **
5393286 TTTTAATTTTTTGACTTGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGA-T-GGGTACTTTAA
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTC-GTTTTCATTTTCTGACTCATG-A-TTTAA
* * * * * * *
5393348 TCCCAATCGTTTTCATTTTCTGACTTGTAGTTTAATCCCGATCG
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * *
5393392 TTTTCATTTTTTGATTTGTGGTTTAATC-TGGGCTGTTCTCATTTTTTGACTCATTG-TTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTTCTGACTCA-TGATTTAAT-
* * * * ** * *
5393455 CCCG-TCGTTTTCATCTTCTGACTCACGGTTTAATCGC-GGTCAT
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATC-CTGATC-G
** *** * * ** * *
5393498 TTTTGTTTTTTTGACTTGCGGTTTAATCTCGGTCGTTCTTCATTTTTTGACTTGTGTTTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTT-TTCATTTTCTGACTCATGATTTAATCT
* * * * * * *
5393563 CAATCGTTTTCATTTCTTGACTAGTGATTTAAACCCGATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * ** * * * *
5393604 CATTCATTTTCTGACTAATGGTTTAATCCCAATCATTTTTCTTTTTCATTTTTTTATCGTTC-TC
1 TTTTCATTTTTTGACTCATGG-TT--T---AATC-TTGGTCGTTTTCATTTTCTGA-C--TCATG
* * *
5393668 ATTTCCTAA-CTCGTAGCTTAATTCCAGTCATTTTCATTTCCTGACTCATGGTTTAATCCTGTTC
56 A-TT--TAATCTCG-ATCTT--TT----TCA--TT--TTT--TGACTCGTGGTTTAATCCTGATC
*
5393732 AT
105 -G
* *** * * * *
5393734 TTTTC-TTTTTCTGACTGATGGTTTAATCCCAGTCATTTCCATTTTTTGACTCATGGTTTAATCT
1 TTTTCATTTTT-TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * * *
5393798 -TAGTCATTTCCATTTTCTTG-CTAGTGCTTTAGT-CTAAGTCA
65 CGA-TCTTTTTCATTTT-TTGACTCGTGGTTTAATCCTGA-TCG
**** * * * *
5393839 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTAACTCATGGTTTAATC
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * ** * *
5393902 -CATGTTGTTTTTCATTTTTTAACTCGTACTTTAAT-CTCAGTCA
64 TC--GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * ** * * * *
5393945 TTTTCATTTCTTAACTCATGATTCAAAC-TAGTCGCATTCATTTTCTAACTCGTGGTTTAGTCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5394009 GATCATTTTTTTTTCATTTTTCGA-TCGT--TTTCATTTTCTGACTCGTGG
66 GATC-----TTTTTCATTTTTTGACTCGTGGTTT-A-ATCCTGA-TC---G
* * * ** * * ** ** * **
5394057 TTTTAATCCCAATCATTTTCATTTTC-TGACTCAATGTTTAATC-TCGGTCATTTTC--ATTTTT
1 -TTT--T--C-AT-TTTTTGA--CTCATGGTTTAAT-CTTGGTCGT-TTTCATTTTCTGA-CTCA
* * * * * * *
5394118 TGACTCGTGGTTTAATC-CTTATCGTTTTCATTTTTTGACTGGTGATTTAATCTTGGTCA
54 TGA-T------TTAATCTC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * *
5394177 TTTT--TTATTTATGACTCGTGATTTAATCTCAGTCGTTGTCATTTTTTGACTCATGATTTAATC
1 TTTTCATT-TTT-TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * * * * *
5394240 -CTGAT-TGTTTTAATTTCTTAACTCGTGATTTAAACCCGATTG
64 TC-GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * *
5394282 TATTCATTTTTTGACTCGTGGTTTAATCCTGGTTGGTTTCATTTTTTGACTCATGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * * *
5394347 GGTCGTTTTCATTTTCTGACTCATGATTTAAT-CTCGATCT
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * *
5394387 TTTTTATTTTCTAACTCGTAGTTTAATAC-GGGTCATTTTCATTTTTTGACTCAT-AGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATC
* * * * *
5394450 TC-AGT-TATTTTCATTTTTTAACTTGTGATTTAAT-TTCGATCA
64 TCGA-TCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * *
5394492 TTTT--TTGTTCTCTGACAT-ATGATTTAGT-TTCGGT-GTTTTTGATTTTCTGACTCATCATTT
1 TTTTCATT-TT-T-TGAC-TCATGGTTTAATCTT-GGTCG-TTTTCATTTTCTGACTCATGATTT
* ** * * *
5394552 ATTCTC-AGTAGTTTTCGA-TTTTTGACAT-GTGATTTAAT-ATCGATCA
60 AATCTCGA-TCTTTTTC-ATTTTTTGAC-TCGTGGTTTAATCCT-GATCG
* * ** * * * **
5394598 TTTTCATTTCTTCGACTCATGATTTAATGATGATTGTTTTTCATTTTTTGACTTGTGATTTAATC
1 TTTTCATTT-TTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * ** *
5394663 TTGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCA
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** *
5394705 TTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTC-TTTTTGTTTTCTGACTCATGATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * *** *
5394769 TGGTCATTTT--TTTTTT-ACTTACGGTTTAATTCC-CATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAA-TCCTGATCG
* *** * * * *
5394807 CTTTT-AATCCCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTGATTCATGATTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAAT-
* * * ** * *
5394871 CTTG-T-TGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTG
63 CTCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * ** * * * * * * * * * *
5394913 TTTTCATTATCTCAGACGTGGTCTAATCCTTCG-CATTTTTATTTTATGGCTCGTG-TTTTATTT
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5394976 C-AGTCATTTTCATTTTCTGACTCATAGTTTAAT-CTCGATCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * ** *
5395017 TTTTCATTTTCTGAC-CAATAGTTTAATCATGATCGTTTTTCTTTTTTTGATTGGTGGTTTAATC
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * * *
5395081 -CTAGT-TGTTTCTATTTTTTGACTTGTGGTTTAAT-CTGGCTCA
64 TCGA-TCTTTTTC-ATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * ** * *
5395123 TTTTCATTTTTTGACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGTTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC-
* * *
5395187 TAG-TCATTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCAT
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATC-G
* ** * * ** * ** *
5395229 TTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATTGTTTTCATTTTCTGACTTGTGGTTTAATC-
1 TTTTCATTTTTTGACT-CATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * *
5395292 CTGGTCGTTTTCATTTTCTGATTTGTGGTTTAAT-CTGGGTTG
65 C-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* *** * * * * *
5395334 TTCTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTCCGACTCATGGTTTAATCGC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *** *
5395399 GATCATTTTCATTTTTTTAACTTACGGTTTAAT-CTCGGTCG
66 GATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * ** * * *
5395440 TTCTTCATTTTTTGACTCGTGTTTTCATCACGATCGTTTTCA-TTTCTTGACTCGTGATTTAAAC
1 TT-TTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATC
* *** * * **
5395504 CCGATCGCATTCATTTTCTGACTCATGGTTTAATCCCAATC-
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * *
5395545 TTTT--TTCTTTT---TCAT--TTT--T-TT-ATAGTTCTCATTTTCTAACTCGT-AGCTTAAT-
1 TTTTCATT-TTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATC
* ** * * * *
5395597 TCCAGT-TATTTTCATTTCCTAACTCATGGTTTAATCCTGTTCAT
64 TCGA-TCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* * ** * * * *
5395641 TTTTC-TTTTGCTGACTAATGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 TTTTCATTTT-TTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * * * * *
5395705 -TAGTCGTTTCCATTTTCTGGCTCATGCTTTAGT-CTAGGTCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
*** * * * *
5395746 TTTTC-TTTTTTCGACTCAAT-GTTTAATCTCACTTGTCTTT-GTTTTCTGACTCGTGGTTTAAT
1 TTTTCATTTTTT-GACTC-ATGGTTTAATCTTGGTCGT-TTTCATTTTCTGACTCATGATTTAAT
* * * * ** * *
5395808 CTAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCACAG-TCA
63 CT-CGATCTTTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCG
* ** * * * * * *
5395852 TTTTCATTTCTTGACTCATCATTAAAAC-TGGTCGCATTT-ATTTTCTAACTCATGGTTTAGTC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5395914 CTGATCATTTTTTTTTATTTTTCGA-TCGT--TTTCATTTTCTGACTTG
65 C-GATC----TTTTTCATTTTTTGACTCGTGGTTT-A-ATCCTGA-TCG
** ** ** * * ** * * *
5395960 TGGT-ATAATCCGA---ATCGTTT--TCCTT-TTC-TGACTCAATGTT-TAATCTCGATTGTTTT
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGT-TTTC-ATTTTCTGA-CTC-A-TGATTT
** * * * * * * * * * *
5396016 CCTTTCTCTAGCTAGTGGTTT-A-ATCTT-AGTCAT-TTTTATTTTCTAACTCG
60 --AATCTCGATCT--T--TTTCATTTTTTGACTCGTGGTTTA-ATCCTGA-TCG
* ** * * * * * * * **
5396066 TGGTTTAATCCTTATCTT-TTTCAT-TTTTGA-C-TAGT-GATTT-A-ATCCTG-GTCATTTTTT
1 T--TTTCAT--TT-T-TTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTT
* * * * * ** * * ** *
5396123 ATTTATGACTCGTGAT-TTAATCTCAGTCGTTGTCATTTTTTGATTAATGATTTAATCTCG
60 A---AT--CTC--GATCTT--TTTCA-T-TTTTTGACTCGTGGTTTAAT--CCTGA--TCG
* *** * * * * * * * * * *
5396183 ATTGTTTTCATTTCTTAACTCGTGATTTAAACTCGATTGTATTCATTTTTTGACTCGT-AGTTTA
1 TTTTCATT---TT-TTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTA
* * *
5396247 ATC-CTGGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCG
61 ATCTC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * *
5396292 TTTTCATTTTCTGACTCGA-GATTTAATC-TGGATCTTTTTTATTTTCTAACTCGT-AGTTTAAT
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGA-TTTAAT
* * *** * *
5396354 AC-GGGTCATTTTT-ATTTTTTGACTCACAGTTTAATCC-CAGTCA
63 -CTCGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5396397 TTTTCATTTTTTAACTCATGATTTAAT-TTCGGTCATTTTTCGTTCTCTGACAT-GTGATTTAGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTC-GTTTTCATTTTCTGAC-TCATGATTTAAT
* * ** * * * * * *
5396460 TTCGGTGGTTTTGATTTTTCTGACTCATGATTT-ATTCTCAGTAG
63 CTCGATCTTTTTCATTTTT-TGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5396504 TTTTTGA-TTTTTGACAT-ATGATTTAATATCGATCATTTTCATTTCTCTAACTCATGATTTAA-
1 -TTTTCATTTTTTGAC-TCATGGTTTAATCTTGGTCGTTTTCATTT-TCTGACTCATGATTTAAT
* * * * * * *
5396566 CGACGGTTGTTTTTCA-TTTCTGACTTGTGATTTCAT-CTCGATCG
63 C-TC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * *
5396610 TTTTCATTTTTTGACTCACGGTTTAATCCTGATCATTTTCAATTTT-TAACTCGTGGTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTC-ATTTTCTGACTCATGATTTAATCT
* ** * * * ** * *
5396674 CGGT-TGTTTTTGTTTTCTGACTCATGATTTAATTTTGGTCA
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * *** * *
5396715 TTTTCATTTTTTGCCTTACGGTTTAAT-TCCCATCGCTTTT--GTTCCTTGACTCATGATTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCG-TTTTCATTTTC-TGACTCATGATTTAAT
* * * * *
5396777 CTTGGTCATTTTCATTTTTCTGACTCGTGATTTAATCCTTG-TTG
63 CTCGATCTTTTTCATTTTT-TGACTCGTGGTTTAATCC-TGATCG
* * * * * ** * *
5396821 TTTTCATTTTCTGA--CATGTGATTTAATTTTTGTTGTTTTCATTATC-GA-AGATGCGGTCTAA
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTTTCTGACTCAT--GATTTAA
* * * * * *
5396882 TCCCTCG-T-ATTTTCATTTTATGATTCGTGGTTT-ATTCTCAGTCA
62 T--CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * ** * * * * * * *
5396926 TTTTCATTTTCTAACACATAATTTAATCTCGATCATTTTTATTTTTTGACCCATGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5396990 TGATCATTTTT--TTTTTT-ACTGGTGGTTTAATCTTGGTTG
66 -GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** ** * *
5397029 TTTCCATTTTTTGACTTGTGGTTTAATC-TGGCTTATTTTCATTTTTTGACTCAT-AGCTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGA-TTTAATC
** * * * *
5397092 AGGAT-TATTTTTATTTTTTGACTCATGGTTTAATCAT-AGTCA
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5397134 TTTTCATTTTTTGACTCGTGGTTTAATCGTGGTCCTTTTTCATTTTTTAACTCATGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGT-CGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * ** *
5397199 CTATCATTTT--TTTTATG---GGTAG-TTAATCCCAATCA
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * *
5397234 TTTTCATTTTTTGACTTGTGGTTTAATCTTGGTCGTTTTCATTTTCTGATTTATGGTTTAATCTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5397299 GGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCCT-ATCG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* * * ** * * * ***
5397339 TTTTCATCTTTCGACTCACGGTTTAATCGCGATCATTTTCAATTTTTTGACTTGCGATTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTC-ATTTTCTGACTCATGATTTAATCT
*
5397404 CGAT-TGTTCTTCATTTTTTTACTCGT-GTCTTAATCAC-GATCG
65 CGATCT-TT-TTCATTTTTTGACTCGTGGT-TTAATC-CTGATCG
* * * * ** * ** * * *
5397446 TTTTCATTTCTTGACTCGTGATTTAAACCCGATCGCATTCATTTTCTGACTTATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5397511 AATCCTTTTTC--TTTTTCA-T--T--TTT--T--T-ATCG
66 GAT-CTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * * *
5397540 TTCTCATTTTCTAACTCATAGCTTAAT-TTCAGTCATTTTCATTTCCTGACTCATGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5397603 CTGTTCATTTTTC-TTTTTCTGACTAGTGGTTTAATCCCGGTCA
65 C-GATC-TTTTTCATTTTT-TGACTCGTGGTTTAATCCTGATCG
* * * * * ** * *
5397646 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTTGTGCTTTAATCTA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * *
5397711 GGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCC-CACTTG
66 GATCTTTTTCATTTTT-TGACTC-GTGGTTTAATCCTGA-TCG
* * * * *** * * * *
5397751 TTTTCGTTTTCTAACTCGTGGTTTAATCCCAGTCATTTTCA-TTTCTTGACTCGTGATTCAAACT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATCT
* *** * * * * **
5397815 -GGTCGCATTCATTTTCTAACTCGTGGTTTAGTACCAATCATTTTT
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAAT-CC--TGA--TCG
* * **** * *
5397860 TTTTAATTTTTCAATCATTTTTTTTGACTCGTGGTTTAATCCCAATCATTTTCGTTTTCTGACTC
1 TTTTCA--TTT---T--T------TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTC
* * * *
5397925 ATGATTTAATCTCGATCGTTTTCA-TTTTTGACTCGTGATTTAAT-CTCGGTTG
53 ATGATTTAATCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
** * * * * * * * *
5397977 TTTTTGTTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACTTACGGTTTAAT-TC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT-
* * *** * * *
5398041 CCATCGCTTTT-ATTCCATGACTCATGATTTAATCCTTG-TCA
65 CGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCC-TGATCG
* * * * ** *
5398082 TTTTCATTTTTCTGATTCGTGATTTAATCCTT-GTTGTTTTCATTTTCTGACTTGTGATTTAATT
1 TTTTCATTTTT-TGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * ** * * *
5398146 TTGGT-TGTTTTCATTATCTAAGACAC--GGTCTAATCCCTCG--CA
64 TCGATCT-TTTTCATT-T-TTTGACTCGTGGTTTAAT-CCT-GATCG
* * * * *** * *
5398188 TTTTCATTTTATGACTCGTGATTTATTCCCAGTCATTTTCATTTTCTGA-TCCATGGTTT-ATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACT-CATGATTTAATCT
* * * *
5398250 CTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATACT-AGTTG
65 C-GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * *
5398293 -TTTCTAGTTTTTGACTTATGGTTTAATC-TGGCTCATTTTCATTTTCTGGCTCATGACTTAATC
1 TTTTC-ATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC
** * ** *
5398356 AGGAT-TATTTTCATTTTTTGACTCATGGTTTAATTAT-AGTCT
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * ** * *
5398398 TTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTTGTGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTTCTGACTCATGATTTAATCT
* * ** * **
5398463 CTATC--ATT--TTTTTT-ACGGGTAGTTTAATCCCAATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * ** * *
5398499 TTTTTATTTTCTGACTTGTGGTTTAATCCTGGTTGTTTTCATTTTTTGATTTGTGGTTTAATCTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5398564 GGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCCTG-TCG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* ** * * * * *
5398604 TTTTCATCTTCCGACTC-TCGGTTTAATCGTGGTCATTTTCATTTTTTTGACTTACGATTTAATC
1 TTTTCATTTTTTGACTCAT-GGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAATC
* *
5398668 TTGATCGTTCTTT-ATTTTTTGACTCGTGTTTTAATCAC-GATCG
64 TCGATC-TT-TTTCATTTTTTGACTCGTGGTTTAATC-CTGATCG
* * * * * ** * * *
5398711 TTTTCATTTCTTAACTCGTGATTTAAACCCGATCGTATTT-ATTTTTTGACTCATGGTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGT-TTTCATTTTCTGACTCATGATTTAATCT
* * * * * * * * *
5398775 -TAGTCGTTTCCATTTTCTGGCTCGTGCTTTAGT-CTAGGTCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* *** * ** * *
5398816 TTTTCTTTTTTTGACTCAAT-GTTTAA-C-TCACCTATTTTTGTTTTTTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTC-GTTTTCATTTTCTGACTCATGATTTAATC
* * ** ** * *
5398878 -CAAGTTGTTTTTCATTTTTCAACTCGTACTTT-ATCAT-AGTCA
64 TC--GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * * * *
5398920 TTTTCATTTCTTGACTCATGATTCAAAC-TGGTCGTATTCATTTTCTAACTCGTGGTTTAGTCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5398984 GATC--ATT--TTTTTT---TCAT--TTT--T-C-GATCA
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * ** *
5399011 TTTTCATTTTCTGACTCGTGGTTTAATCCTAATCGTTTTCCTTTTCTGACTCAATG-TTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTC-ATGATTTAATCT
* * * *
5399075 C-AGTCGTTTTCCTTTTTCT-AGCTAGTGGTTTAAT-CTCGATTG
65 CGA-TCTTTTTCATTTTT-TGA-CTCGTGGTTTAATCCT-GATCG
* * * * ** * ** * * *
5399117 TTCTTCATTTTTTTAACTCGTGTTTTAGTCACGATTTTTTTTA-TTTCTTGACTCCTGATTTAAA
1 TT-TTCA-TTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAAT
* *** * * ** *
5399181 CCCGATCGCATTCATTTTCTGACTCATGGTTTAATCCCAATCA
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * *
5399224 TTTT-A-CTTCT---TCAT--TTT--T-TT-ATCGTTCTCATTTTCTAAGTCGT-AGCTTAAT-T
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATCT
* * ** * * *
5399276 CCAGTCATTTTCATTTCCTGACTCATGGTTTAATCCTGTTCAT
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
*** * * * * * * *
5399319 TTTTC-TTTTTCTGACTGGGGGTTTAATCCTGATCATTTCCATTTTCTAACTTA-AAGTTTAATC
1 TTTTCATTTTT-TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATC
* * * * * * * *
5399382 -CTAGTCGTTTCCATTTTCT-AGCTCGTGCTTTAGT-CTAGGTCA
64 TCGA-TCTTTTTCATTTTTTGA-CTCGTGGTTTAATCCT-GATCG
* **** * * * *
5399424 TTTTC-TTTTTCTGACTAAAT-GTTTAATCGCACTTGTTTTCGTTTTCTGACTCGTGGTTTAATC
1 TTTTCATTTTT-TGACT-CATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * * ** * *
5399487 TAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCC-CAGTCA
64 T-CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * ** * * * * *
5399530 TTTTCATTTCTTGACTCATGATTCAAAC-TGGTCGCATTCATTTTCTAACTCGTGGTTTAGTCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5399594 GATC-ATTT--TTTTTT---TCAT--TTT--T-C-AATCG
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* **** *
5399622 TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGATTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5399687 GATCGTTTTCATTTTTTGACTCATGGTTTAATCTTGATCT
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * ** *
5399727 TTTTCATTTTTTGACTCGTGATTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAA-TCT
* * *** * *
5399792 GGA-C-ATTT--TTTTTT-ACTTACGGTTTAATTCTTATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* *** * * * * * *
5399828 CTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTGATTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAAT-
* * * * ** * *
5399892 CTTG-T-TGTTTTCATTTTCTGACTTGTGATTTAATTTTGGTTG
63 CTCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * * * *
5399934 TTTTCATTATTTAAGACGC--GATCTAATCCCTCGT-ATTTTCATTTTATGACTCATGTTTTATT
1 TTTTCATT-TTT-TGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAAT
* *
5399996 CTC-AGTCATTTTCATTTTTTGA-TCCATGGTTTAATCCTGATCG
63 CTCGA-TCTTTTTCATTTTTTGACT-CGTGGTTTAATCCTGATCG
* ** * ** *
5400039 TTTTTCTTTTTTTGACTGGTGGTTTAATAC-TGGTCGTTTTTAGTTTT-TGACTTGTGGTTTAAT
1 -TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAAT
* * * * * ** **
5400102 CTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTA
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * ** * * * *
5400145 TTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTTATTTTTTGACTCATGGTCTAATCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC-T
* *
5400210 -GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCAT
65 CGATC-TTTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATC-G
* *** * **** * ** *
5400252 TTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCATTTTCA-TTTCTGACTTGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * ** * *
5400315 TAGTCATTTTT-ATTTTTTGATTTATGGTTTAAT-CTGGGTTG
66 GA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
*** * * * * * *
5400356 TTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACGGTTTAATCGC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *** * *
5400421 TG-TCATTTTCATTTTTTTGACTTACGGTTTAAT-CTCAGTTG
66 -GATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * *
5400462 TTCTTCATTTTTTGACTCGTGTTTTAATCATGATCGTTTTCA-TTTCTTGACTCGTGATTTAAAC
1 TT-TTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATC
* ** * * * * * * ** *
5400526 CCGAT-TGCATTCAATTTCTAACACATAGTTTAATCCCAATCAT
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* * * * *
5400569 TTTTC-TTTTCCTGACTTATGGTTTAATCCTGGTCGTTTTCATTTTTTGACTCATGGTTTAATCT
1 TTTTCATTTT-TTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
** * ** * *
5400633 CGATCGATTTCATTTTTTGAATCACGATTTAATCTTGATC-
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * *
5400673 TTTCTTATTTTCTAACTCGTAGTTTAATAC-GGGTCATTTTCATTTTTTGACTAACA-G-TTTAA
1 TTT-TCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACT--CATGATTTAA
** * * * * *
5400735 TCTCGATCACTTTCATTTTTTTACTCGTGATTTAAT-TTCGGTCAT
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC-G
* * * * * * * *
5400780 TTTTCGTTCTCTGA--CATGTGATTTAGT-TTCGGTGGTTTTGACTTTCTGACTCATGATTTACT
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTT-GGTCGTTTTCATTTTCTGACTCATGATTTAAT
* * * * * * *
5400842 TTC-AGTAGTTTTTGA-TTTTTAACAT-GTGATTTAAT-ATCGATCA
63 CTCGA-T-CTTTTTCATTTTTTGAC-TCGTGGTTTAATCCT-GATCG
* * *** * ** *
5400885 TTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGACTTAATC
1 TTTTCATTT-TTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * *
5400950 TCGATCATTTTCATTTTTTGA-TTGACGGTTTAATCAC-GATCA
64 TCGATCTTTTTCATTTTTTGACTCG-TGGTTTAATC-CTGATCG
* * * * ** * * *
5400992 TTTTCATTTTTTCACTCATGGATTAATCTCGGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *** *
5401057 GGTCATTTTCA-TTTTTGATTTACGGTTTAATTCC-CATCG
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAA-TCCTGATCG
* *** * * * * * *
5401096 CTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGATTCGTTATTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAATC
* * * ** * **
5401160 -C-TTCTTGTTTTCATTTTCTGACAT-GTGATTTAATTTTGGTTT
64 TCGATC-T-TTTTCATTTTTTGAC-TCGTGGTTTAATCCTGATCG
** * * * * * * * * *
5401202 TTTTCATTATCTAAGACGC--GGTCTAATCCTCGT-ATTTTCATTTTATGACTCGTGGTTTATTC
1 TTTTCATT-T-TTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * * *
5401264 TC-AGTCATTTTT-AATTTTTAACTCATAGTTTAAT-CTCGATCA
64 TCGA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * ** * * ** *
5401306 TTTTCATTTTTTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5401370 CTGGT-TGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA
65 C-GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
** * ** * **
5401412 TTTTCATTTTTTGACTCATGACTTAAT-TAGGATTATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC-
* * * * * * *
5401476 TAG-TATTTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTT
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* * * * * * ***
5401518 TTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGACGGGT-AGTTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTC-GTTTTCATTTTCTGACTCATGA-TTTAAT
* * * * * * *
5401581 CCCAATCGTTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCA
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * *
5401623 TTTTTATTTTTTGATTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAAT-CT
* * ** *
5401688 CG-T-TGTTTTCATCTTGTGACTCACGGTTTAATCGCTG-TCA
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCG
** * * *
5401728 TTTTCATTTTTTTGACT--TGCGATTTAATCTCAGTCGTTCTTCATTTTTTGACTCGTGTTTTAA
1 TTTTCA-TTTTTTGACTCATG-G-TTTAATCTTGGTCGTT-TTCATTTTCTGACTCATGATTTAA
* * * * * *
5401791 TCAT-GATCGTTTTCATTTCTTGACTCATGATTTAA-ACTCGATTG
62 TC-TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
** * * * * **** * *
5401835 CATTCAATTTCTGACTCACGGTTTGATCCCAATCATTTTTC-TTTTCCTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTT-CTGACTCATGATTTAATC
* * * *
5401899 -CTGCTCATTTTTC-TTTTTCTGACTGGTGGTTTAATCCCGATCA
64 TC-GATC-TTTTTCATTTTT-TGACTCGTGGTTTAATCCTGATCG
* * * * * * *
5401942 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCATGCTTTAATCTA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * *
5402007 GGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCC-CACTTG
66 GATCTTTTTCATTTTT-TGACTC-GTGGTTTAATCCTGA-TCG
* * * * * *
5402047 TTTTCATTTTCTGACTCATGGTTTAATCTAGGTTGTTTTTCATTTTTTAACTCGT-ACTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGA-TTTAATC
* * * * * * * *
5402111 -CCAGTCATTTTCATTTCTTGACTCATGATTCAA-ACTGGTCG
64 TCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * * * * **
5402152 CGTTCATTTTCTAACCCGTGGTTTAGTCTCGAT-AATTT--TTTT-T---TCAT--TTT--T-T-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5402204 GATCGTTTTCAATTTCTGACTCGTGGTTTAATCC-GAATCC
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTG-ATCG
* * * * * *
5402244 TTTTCGTTTTCTGACTCAAT-GTTTAATCTCGATCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAA
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTCGTTTT-CATTTTCTGA-CTCA-TGATTTAA
* * *
5402306 TCTCGGTCATTTTT-ATTTTTTGACTCATGGTTTAATCCTTATCG
62 TCTCGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * *
5402350 TTTTCATTTTTTGACT-ACTGATTTAATCCTGGTCATTTT-TTGTTTCTGACTCGTGATTTAATC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCAT-TTTCTGACTCATGATTTAATC
* * * * * * *
5402413 TCAATCCTTGTCATTTTTTGACTCATGATTTAATCCCGATTG
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * ** * * * * ** *
5402455 TTTTCATCTCTTAACT--TGCGATTTAAACCCGATTGTATTCATTTTTTGACTTGTGGTTTAATC
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * *
5402518 -CTGGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCG
64 TC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* ** * * * * * * * *
5402560 TTTTCATTTTTTGAATCCCGATTTAATCTTGATCCTTTTTATTTTCTAACCCGT-AGTTTAAT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATCT
* * ***
5402623 CGAGTCATTTTCATTTCTTGACTCACAGTTTAAT-CTCGATCG
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * * *
5402665 CTTTCATTTTTTTACTCGTGATTTAAT-TTCGGTCACTTTTCGTTCTCTAACAT-GTGATTTAGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTC-GTTTTCATTTTCTGAC-TCATGATTTAAT
* * ** * * * * * * * *
5402728 TTCGGTGGTTTTGACTTTTTGACTCATGATTTACT-TTCAGTAG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * *
5402771 TTTTCGA-TTTTT-A-ACATGTGATTTAATATCGATCATTTTCATTTCTCTGATTCATGATTTAA
1 TTTTC-ATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTT-TCTGACTCATGATTTAA
** * * * * * *
5402833 TGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAAT-CTCGATCT
62 TCTC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * *
5402878 TTTTCATTTTTTGATTGACGGTTTAATCATGATCATTTTCATTTTTTCACTCATGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* ** * * * ** * *
5402943 GGT-TGTTTTTGTTTTCTGACTCTTGATTTAATTTTGGTCA
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * *** * **
5402983 TTTTCA-TTTTTGATTTACGGTTTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * ** *
5403045 -CTGGTCATTTTCATTTTTTTGATTCGTTATTTAATCCTTG-TTG
64 TC-GATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCC-TGATCG
* * * * * * * *
5403088 TTTTCATTTTCT-A-ACATGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTCTAA
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTTTCT--GACTCATGATTTAA
* * * * *
5403149 TCCCTCG-T-ATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCA
62 T--CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * * *
5403193 TTTTTAATTTTTAACTCATAGTTTAATCTCGATCATTTCCATTTTCTGACCCAT-AGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATCT
* * * * *
5403256 CTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
65 C-GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * ** *
5403299 TTTCCATTTTTTGACTTGTGGTTTAATC-TGGCTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * *
5403363 GGAT-TATTTTCATTTTTTGACTCATGGCTTAATCATAGTAT--
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-G-ATCG
* * * * * * *
5403404 TTTTCATTTTTTGACTCATGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGT-CGTTTTCATTTTCTGACTCATGATTTAATCT
* ** * **
5403469 CTATCATTTTTC-TTTTCTTGACGGGTAGTTTAATCCCAATCG
65 CGATC-TTTTTCATTTT-TTGACTCGTGGTTTAATCCTGATCG
* ** * * * * * ** * * *
5403511 TTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCATTTTTATTTTTTGATTTGTGGTTTAATTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5403575 GGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCCCG-TTG
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* * * * * * *** *
5403615 TTTTCATCTTGTGACTCACGGTTTAATCGCT-GTCATTTTCATTTTTTTGACTTGCGGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATC-TTGGTCGTTTTCA-TTTTCTGACTCATGATTTAATC
* * *
5403679 TC-AGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCATGATCG
64 TCGA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * ** * * ** * * * *
5403722 TTTTCATTTCTTGACTCGTGATTTAAACCCGATTGCATTCAATTTT-TGATTCACGATTTGATCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTC-ATTTTCTGACTCATGATTTAATCT
* * * * *
5403786 CAATCATTTTT--TTTTCTTGACTCATGATTTAATCCTGCTCAT
65 CGATC-TTTTTCATTTT-TTGACTCGTGGTTTAATCCTGATC-G
* ** ** * * * *
5403828 TTTTC-TTTTTCCGACTGGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 TTTTCATTTTT-TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * * *
5403892 -TAGTCATTTCCATTTTCTGGCTCGTGCTTTAAT-CTAGGTCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
**** * * * *
5403933 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTGACTCGTGGTTTTAAT
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCAT-GATTTAAT
* * * * **
5403996 CTAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCCT-AGTCG
63 CT-CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * ** * * * *
5404040 TTTTCATTTCTTGACTCATGATTCAAAC-TGGTCGCGTTCATTTTCTAACTCGTGGTTTAGTCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
**
5404104 GATCTTTTTTTTTTCATTTTTTGA-TCGT--TTTCAATTTTTGACTCG
66 GATC-----TTTTTCATTTTTTGACTCGTGGTTT-AA-TCCTGA-TCG
* **** * ** * * * * * * **
5404149 TGGTTTAATCCGAAT-CCTTTTCGTTT--TC-TGACTCAATGTTT-AATCTC-GA-TCGTTTTCC
1 T--TTTCAT-TTTTTGACTCATGGTTTAATCTTG-GTC-GT-TTTCATTTTCTGACTCATGAT--
** * * * * * * ** * *** * *
5404207 TTTTTCTAGCTAGTGGTTTAATCTCGGTCGTTTTCATTTTTTGACTCATGGTTTAATCCTTATCG
58 TTAATCT--CGA-T-CTTT--T-TC-AT-TTTTTGA-CTCGTG-GT--TTAATC----CTGATCG
* * * * *
5404272 TTTTCATTTTTTGACT-ACTGATTTAATCCTAGTCATTTT--TTAATTCTGACTCGTGATTTAAT
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCATT--TTCTGACTCATGATTTAAT
* * * * * * *
5404334 CTCAATCGTTGTCATTTTTTGACTCATGATTTAATCCCGATTG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * ** * * * ** *
5404377 TTTTCATTTCTTAACTCGCGATTTAAACCCGATTGTATTCATTTTCTGACTTGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * ** *
5404441 TGGTCGTTTTCATTTTTTGACTTATGGTTTAAT-TTCGATCG
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * *
5404482 TTTTCATTTTTCGAATCGTGATTTAATCTTGATC-TTTCTTATTTTCTAACTCAT-AGTTTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTT-TCATTTTCTGACTCATGA-TTTAATC
** * ****
5404545 GGGGT-TATTTTCATTTTTTGACTCACAATTTAAT-CTCGATCG
64 TCGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * * *
5404587 CTTTCATTTTTTTACTCGTGATTTAAT-TTCGATCATTTTTCGTTCTCTGACAT-GTGATTTAGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTC-GTTTTCATTTTCTGAC-TCATGATTTAAT
* * ** * * * ** * * * * *
5404650 TTCGGTGGTTTTGACTTTCTGACTCACGATTTACT-TTCAGTAG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5404693 TTTTCGA-TTTTTAACAT-TTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAAT
1 TTTTC-ATTTTTTGAC-TCATGGTTTAATCTTGGTCGTTTTCATTT-TCTGACTCATGATTTAAT
** * * * * * *
5404756 GACAGTTGTTTTTCATTTTCTGACTTGTGATTTAAT-CTCGATCA
63 CTC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * * *
5404800 TTTTCATTTTTTGATTGACGATTTAATCATGATCATTTTCATTTTTTCACTCATGGTTTAATCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
** * * ** * *
5404865 GAT-TGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCA
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * *** * **
5404905 TTTTCA-TTTTTGATTTACGGTTTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCT-TGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * ** ** *
5404967 -CTGGTCATTTTCATTTTTTTGATTCGTTATTTAATCCTTCTTG
64 TC-GATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * *
5405010 TTTTCATTTTCTGA--CATGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTCTAA
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTTTCT--GACTCATGATTTAA
* * * * *
5405071 TCCTTCG-T-ATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCA
62 T-C-TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * * * *
5405115 TTTTTAATATTTAACTCATAGTTTAATCTCGATCATTTTCATTTTTTGAC-CTAT-AGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTC-ATGA-TTTAATC
* * * * *
5405178 -CTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
64 TC-GATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* *** * * ** *
5405221 TTTCCATTTTTTGACTTGGGGTTTAATC-TGGCTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * *
5405285 GGAT-TATTTTCATTTTTTGACTCATGGCTTAATCATAGTAT--
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-G-ATCG
* * * * * *
5405326 TTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5405390 C---C--TTTCATTTTTTTAATCGCGATTTAATCTTGATC-
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * * * * *
5405425 TTTCTTATTTCCTAACTCGTAGTTTAATAC-GGGTCATTTTCA-TTTCTTGACTCA-CAGTTTAA
1 TTT-TCATTTTTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTC-TGACTCATGA-TTTAA
* * * * * *
5405487 TCTCGATCGCTTTT-ATTTTTTTACTCGTGATTTAAT-TTCGGTCAT
62 TCTCGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATC-G
* * * * * * *
5405532 TTTTCGTTCTCTGA--CATGTGATTTAGT-TTCGGTGGTTTT-GTCTTTCTGACTCATGATTTAC
1 TTTTCATTTTTTGACTCATG-G-TTTAATCTT-GGTCGTTTTCAT-TTTCTGACTCATGATTTAA
* ** * * * *
5405593 TTTC-AGTAGTTTTCGA-TTTTTAACGT-GTGATTTAAT-ATCGATCA
62 TCTCGA-TCTTTTTC-ATTTTTTGAC-TCGTGGTTTAATCCT-GATCG
* * *** * **
5405637 TTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATC
1 TTTTCATTT-TTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * *
5405702 TCGATCATTTTCATTTTTTGA-TTGATGGTTTAATCAT-ATCA
64 TCGATCTTTTTCATTTTTTGACTCG-TGGTTTAATCCTGATCG
* * * **
5405743 TTTTCATTTTTTCACTCATGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAAAT-T
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTT-AATCT
* * * * * *** *
5405807 TGGTCATTTTCATTTTAT-ATTTACGGTTTAATTCC-CATCG
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAA-TCCTGATCG
* *** * * * * * * *
5405847 CTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTTATTTAATC
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAAT-
* * * ** * *
5405911 CTTG-T-TGTTTTCATTTTCTGACAT-GTGATTTAATTTTGGTTG
63 CTCGATCT-TTTTCATTTTTTGAC-TCGTGGTTTAATCCTGATCG
** * * * ** * * * * *
5405953 TTTTCATTATCTAAGACGC--GGTCTAATCCCTCCT-ATTTTCATTTTATGACTCGTGGTTTATT
1 TTTTCATT-T-TTTGACTCATGGTTTAAT-CTTGGTCGTTTTCATTTTCTGACTCATGATTTAAT
* * * * *
5406015 CTC-AGTCATTTTTAATTTTTAG-CTCATAGTTTAAT-CTCGATCA
63 CTCGA-TC-TTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * ** * * ** *
5406058 TTTTCATTTTCTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5406122 CTGGT-TGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA
65 C-GATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * ** * **
5406164 TTTTCATTTTTTGACTCATGGCTTAATC-AGGATTATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATC-
* * * * * * *
5406228 TAG-TATTTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTT
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* * * * ***
5406270 TTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTC-TTTTCTTGACGGGT-AGTTTAA
1 TTTTCATTTTTTGACTCATGGTTTAAT-CTTGGTC-GTTTTCATTTTC-TGACTCATGA-TTTAA
* * * * * *
5406332 TCCCAATCGTTTTCA-TTTTTGACTTGTGGTTTAATCCTGGTCA
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * *
5406375 TTTTTATTTTTTGATTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * ** *
5406440 CAT-TGTTTTCATCTTGTGACTCACGGTTTAATCGCTG-TCA
66 GATCT-TTTTCATTTTTTGACTCGTGGTTTAATC-CTGATCG
*** *** * * *
5406480 TTTTCATTTTTTTGACTTGCGGTTTAATCTCAATCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTTTGACTCATGGTTTAATCTTGGTCGTT-TTCATTTTCTGACTCATGATTTAATC
* * * * * * *
5406545 AT-GATCGTTTTCATTTCTTGACTAGTGATTTAAACCCGATTG
64 -TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * **** * *
5406587 TATTCAATTTCTGACTCACGATTTGATCCCAATCATTTTTC-TTTTCCTGACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTC-GTTTTCATTTT-CTGACTCATGATTTAATC
* * *** * *
5406651 -CTGCTTATTTTTC-TTTTTCTGAAGGGTGGTTTAATCCCGATCA
64 TC-G-ATCTTTTTCATTTTT-TGACTCGTGGTTTAATCCTGATCG
* * * * * * * *
5406694 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * *
5406759 GGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCC-CACTTG
66 GATCTTTTTCATTTTT-TGACTC-GTGGTTTAATCCTGA-TCG
* * * * * * * *
5406799 TTTTCGTTTTCTGACTCGTGGTTTTAATCTAGGTTGTTTTTCATTTTTTAACTCGT-ACTTTAAT
1 TTTTCATTTTTTGACTCATGG-TTTAATCTTGGTCG-TTTTCATTTTCTGACTCATGA-TTTAAT
* * * * * * * *
5406863 C-CCAGTCATTTTCATTTCTTGACTCATGATTCAA-ACTGGTCG
63 CTCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * * * **
5406905 CGTTCATTTTCTAACTCGTGGTTTAGTCTCGAT-AATTT--TTTT-T---TCAT--TTT--T-T-
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5406957 GATCGTTTTCAATTTTTGACTCGTGGTTTAATCC-GAATCC
66 GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTG-ATCG
** * * * *
5406997 TTTTTGTTTTCTGACTCAAT-GTTTAATCTCGGTCGTTTTTCTTTTTCT-AGCT-AGTGGTTTAA
1 TTTTCATTTTTTGACTC-ATGGTTTAATCTTGGTCG-TTTTCATTTTCTGA-CTCA-TGATTTAA
* * * *
5407059 TCTCGGTCGTTTTCATTTTTTGACTCATGGTTTAATCCTTATCG
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * *
5407103 TTTTCATTTTTTGAC-CACTAATTTAATCCTGGTCATTTT-TTATTTCTGACTCGTGATTTAATC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCAT-TTTCTGACTCATGATTTAATC
* * * * * * *
5407166 TCAATCGTTGTCATTTTTTGACTCATGATTTAATCCCGATTG
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * ** * * * * ** *
5407208 TTTTCATTTCTTAACTCGCGATTTAAACCCGATTGTATTCATTTTTTGACTTGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * *
5407272 TGGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCG
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * *
5407313 TTTTCATTTTTTGAATCACGATTTAATCTTGATC-TTTCTTATTTTCTAACTCGT-AGTTTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTT-TCATTTTCTGACTCATGA-TTTAAT-
* * * * *** *
5407376 C-GGGTCATTTTCACTTTTTGACTCACAGTTTAAT-CTCGATCA
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * * *
5407418 TTTTCATTTTTTTACTCGTGATTTAAT-TTCGGTCATTTTTCGTTCTCTAACAT-GTGATTTAGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTT-GGTC-GTTTTCATTTTCTGAC-TCATGATTTAAT
* * ** * * * * * * * * *
5407481 TTCGTTGGTTTTGACTTTCTGACTCATGATTTACT-TTCAGTTG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * *
5407524 TTTTCGA-TTTTT-A-ACATGTGATTTAATATCGATCATTTTCATTTCTCCGACTTCATGATTTA
1 TTTTC-ATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCATTT-TCTGAC-TCATGATTTA
** * * * * *
5407586 ATGACGTTGTTTTTCATTTTCTGGACTTGTGATTTAAT-C---TCG
61 ATCTCGATCTTTTTCATTTT-TTGACTCGTGGTTTAATCCTGATCG
* * * * * ** *
5407628 TAATTTCA-TTTTTGATTAACGGTTTAATCATGATTATTTTCATTTT-TGCACTCATG-GTTAAT
1 T--TTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTG-ACTCATGATTTAAT
* ** * * ** * *
5407690 CTCGGT-TGTTTTTGTTTTTTGAC-GGCTGATTTAATTTTGGTCA
63 CTCGATCT-TTTTCATTTTTTGACTCG-TGGTTTAATCCTGATCG
* * * * * **
5407733 TTTTCA-TTTTTGATTTA-CGTTTAATTCCT-ATCGCTTTTGC-TTCCCTGACTCAT-ATTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAA-TCTTGGTCG-TTTT-CATTTTCTGACTCATGATTTAAT
* * ** ** *
5407793 C-CTGGT-TATTTTCATTTTTTTGATTCGTTATTTTAATCCTTCTGTG
63 CTC-GATCT-TTTTCA-TTTTTTGACTCG-TGGTTTAATCCTGAT-CG
* ** * * * * *
5407839 TTTTCATTTTCTGA--CATGTGATTTTAAT-TTTTTAATGTTTTCATTATCTAAGACGC--GGTC
1 TTTTCATTTTTTGACTCATG-G--TTTAATCTTGGT--CGTTTTCATTTTCT--GACTCATGATT
* * * * * *
5407899 TAATC-C-CTCGTATTTCA-TTTATGACTCGTGGTTT-ATTCTCAGTCAT
59 TAATCTCGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TC-G
* * * * * * *
5407945 TTTTAATTTTAGTAACTCATAGTTTAATCTCGATCATTTTCATTTTCTGAC-CAT-AGTTTAATC
1 TTTTCATTTT-TTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAATC
* * * * *
5408008 -CTAATCATTTTTCTTTTTTTTGACTGGTGGTTTAATCCTGGTTG
64 TC-GATC-TTTTTC-ATTTTTTGACTCGTGGTTTAATCCTGATCG
* ** * * ** *
5408052 TTTCCA-TTTTTGACTTGTGG-TTAATC-TGGCTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * *
5408114 GGAT-TATTTTCAATTTTTGACTCATGGCTTAATCATAGTAT--
65 CGATCT-TTTTCATTTTTTGACTCGTGGTTTAATCCT-G-ATCG
* * * * *
5408155 TTTTCATTTTTT-ACTCATTGGTCTAATCGTGGTCTTTTTCATTTT-TG----ATGGTTTAATCC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * **
5408214 CTATCATTTTTCTTTTTTTTTGAC-GGTAGTTTAATCCCAATCG
65 CGATC-TTTTTC--ATTTTTTGACTCGTGGTTTAATCCTGATCG
** * * * * ** *
5408257 -TTTCA-TTTTTGACTTGTGGTTT-ATCCTGGTTCATTTTTATTTT-TTACCTTTGTGGTTTAAT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGG-TCGTTTTCATTTTCTGA-C-TCATGATTTAAT
* * * * *
5408318 CTGGGT-TGTTTCATTTTTTGACTCATGGTTTAATCC-CA-CTG
63 CTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATC-G
* * ** * * * *** *
5408359 TTGTTTCATCTTGTGACTCACAGTTTAATCACT-GTCATTTTCATTTTTTTGACTTGCGGTTTAA
1 -T-TTTCATTTTTTGACTCATGGTTTAATC-TTGGTCGTTTTCA-TTTTCTGACTCATGATTTAA
* * * * *
5408423 TCTCGGTCGTTCTTCATTTTTTGAATCGTGTTTTAATCATGATCG
62 TCTCGATC-TTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * **** * ** * * * *
5408468 TTGTCATTTCTTGACTCGTGATTCAAACCCAATTGCATTCAATTTCTGACTCATGGTTTGATCCC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * * *
5408533 AATCATTTTTC-TTTTCCTGACTCATGGTTTAATCCTGCTCAT
66 GATC-TTTTTCATTTT-TTGACTCGTGGTTTAATCCTGATC-G
** ** * * * *
5408575 TTTTC-TTTTTGTGACTGGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 TTTTCATTTTT-TGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * * *
5408639 -TAGTCGTTTCCATTTTCTGGCTCGTGCTTTAAT-CTAGGTCA
65 CGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
**** * * * *
5408680 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCATTTTTTGACTCGTGGTTTAATC
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC
* * * * ** * *
5408743 TAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCC-CAGTCA
64 T-CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * ** * * *
5408786 TTTTCATTTCTTGACTCATGATTCAAAC-TGGTCGCGTTCATTTTCTAACTCATGGTTTAGTCTC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* *
5408850 GATCATTTTTTCTTTCATTTTTT-AATCGT--TTTCAATTTCTGACTCGTGG
66 GATC-----TT-TTTCATTTTTTGACTCGTGGTTT-AA-TCCTGA-TC---G
* * * ** * * ** ** * **
5408899 TTTAATCCGAATCCTTTTCATTTTC-TGACTCAATGTTTAATC-TCGGTCGTTTTCCTTTTTCTA
1 TTT--T-C--AT-TTTTTGA--CTCATGGTTTAAT-CTTGGTCGT-TTTCATTTT-C--TGACT-
* * * *
5408962 GCTAGTGGTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTTATCG
52 -C-A-TGATTTAATCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** *
5409019 TTTTCATTTTTTGACT-ACTGATTTAATCCTGGTTATTTT-TTATTTCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCA-TGGTTTAATCTTGGTCGTTTTCAT-TTTCTGACTCATGATTTAATC
* * * * * * *
5409082 TCAATCGTTGTCATTTTTTGACTCATGATTTAATCCCGATTG
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * ** * * * * * * * ** *
5409124 TTTTCATTTCTTAACTCGCGATTTAAACCTGATTGTATTCATTTTTTGACTTGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
* * * *
5409188 TGGTCATTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCA
66 -GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * *
5409229 TTTTCATTTTTTGAATCACGATTTAATCTTGATC-TTTCTTATTTTCTAACTCGT-AGTTTAATA
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTT-TCATTTTCTGACTCATGA-TTTAAT-
* * * * *
5409292 C-GGGTCATTTTCACTTTTTTGACTC--AGTTTAAT-CTCGATCA
63 CTCGATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * * * *
5409333 TTTAT-ATTTTTTTACTCGTGATTTAAT-TTCGGTCATTTTTCGTTCTCTGACAT-GTGATTTAG
1 TTT-TCATTTTTTGACTCATGGTTTAATCTT-GGTC-GTTTTCATTTTCTGAC-TCATGATTTAA
* * ** * * * * * * * * *
5409395 TTTCGGTGGTTTTGACTTTCTGACTCATGATTTACT-TTCAGTAG
62 TCTCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * *
5409439 TTTTCGA-TTTTT-A-ACATGTGATTTAATATCGATCATTTTCATTTTTCCGACTCATGATTTAA
1 TTTTC-ATTTTTTGACTCATG-G-TTTAATCTTGGTCGTTTTCA-TTTTCTGACTCATGATTTAA
** * * * * * *
5409501 TGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAAT-CTCGATCA
62 TCTC-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * * * ** *
5409546 TTTTCATTTTTTGATTAACGGTTTAATCATGATTATTTTCATTTT-TGCACTCATGGTTTAATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTG-ACTCATGATTTAATCT
* * * * * ** * *
5409610 CAGTTGTTTTT-GTTTTCTGACTCGTGATTTAATTTTGGTCA
65 C-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * **
5409651 TTTTCA-TTTTTGATTTACGGTTTAATTCCT-ATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 TTTTCATTTTTTGACTCATGGTTTAA-TCTTGGTCG-TTTTCATTTTCTGACTCATGATTTAATC
* * * * *
5409713 -CTAGTCATTTTCATTTTTTGACTTGTGGTTTAAT-CTGGTTCA
64 TCGA-TCTTTTTCATTTTTTGACTCGTGGTTTAATCCT-GATCG
* * * ** * * *
5409755 TTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTCATTTTTTGACTCATGGTCTAATCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATC-T
* *
5409820 -GGTCTTTTTTCATTTTTTGACAT-GTGGTTTAGTTTTATCCTAATCG
65 CGATC-TTTTTCATTTTTTGAC-TCGTGGTTTA-----ATCCTGATCG
* ** * * ** *
5409866 TTTTTCTTTTTTTGACTGGTGGTTTAATCTTGGTTGTTTCCATTTTCTGACTTGTGGTTTAATCT
1 -TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * * * * ** **
5409931 GGCTCTTTTTCCTTTTCTGACTCATGGCTTAATCAGGATTA
65 CGATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
* * * * * * * * * *
5409972 TTTTCATTTTTTGACTTATGGTTTAATCATAGTCATTTTCATTTTTTGAGAT-GTGGTCTACTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGA-CTCATGATTTAATC-
* * * *
5410036 T-GGTCCTTTTTCATTTTTTGACTTGTAGTTTAGTCCCT-ATCG
64 TCGAT-CTTTTTCATTTTTTGACTCGTGGTTTAAT-CCTGATCG
* ** * **** * ** *
5410078 TTTT--TTTTTTTA-TGGGTAGTTTAATCCCAATCGTTTTGATTTTCTGACTTGTGGTTTAATC-
1 TTTTCATTTTTTGACT-CATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCT
* * * ** ** * **
5410139 CTGGTCGTTTTCATTTTTTGATTTTTCTTTTAAT-CTAGGTTTT
65 C-GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCT--GATCG
* **** * *
5410182 TTTTCATTTTTTGACTCACGGTTTAATCCCCTTCGTTTTCATCTTCCGACTCAT-AGTTTAATAC
1 TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGA-TTTAAT-C
* *** * *
5410246 -CGATCATTTTCATTTTTTTGACTTACGATTTAAT-CTCAGTCG
64 TCGATCTTTTTCA-TTTTTTGACTCGTGGTTTAATCCTGA-TCG
* * * * * * *
5410288 TTCTTCATTTTTTGACTCGTGTTTTAATCATGATCATTTTCA-TTTCTTGACTCGTGATTTAAAC
1 TT-TTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTC-TGACTCATGATTTAATC
* * * *
5410352 TCAATCGTATTCATTTTTTGACTCATGGTTTAATCC
64 TCGATCTTTTTCATTTTTTGACTCGTGGTTTAATCC
5410388 CAATCATTTT
Statistics
Matches: 17966, Mismatches: 5042, Indels: 3521
0.68 0.19 0.13
Matches are distributed among these distances:
90 25 0.00
91 120 0.01
92 137 0.01
93 90 0.01
94 252 0.01
95 33 0.00
96 44 0.00
97 21 0.00
98 33 0.00
99 80 0.00
100 173 0.01
101 158 0.01
102 164 0.01
103 441 0.02
104 1317 0.07
105 6095 0.34
106 5303 0.30
107 2114 0.12
108 351 0.02
109 152 0.01
110 47 0.00
111 115 0.01
112 111 0.01
113 49 0.00
114 20 0.00
115 76 0.00
116 41 0.00
117 38 0.00
118 15 0.00
119 17 0.00
120 36 0.00
121 23 0.00
122 95 0.01
123 75 0.00
124 27 0.00
125 8 0.00
126 6 0.00
127 5 0.00
128 9 0.00
129 38 0.00
130 12 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (105 bp):
TTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCATGATTTAATCTC
GATCTTTTTCATTTTTTGACTCGTGGTTTAATCCTGATCG
Found at i:5385957 original size:71 final size:70
Alignment explanation
Indices: 5385858--5386103 Score: 235
Period size: 71 Copynumber: 3.5 Consensus size: 70
5385848 AGTTTAATCC
* * * *
5385858 CGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGGTTATTTTTCCTTCTCTGACATGTGATT
1 CGATCGTTTTCATTTTTTGACTCATGATTTAATTTCGGTTATTTTTCATT-TCTGACATGTGATT
* *
5385923 TAGTTT
65 TAATAT
* * * * * * *
5385929 CGGTGGTTTTGATTTTCTGACTCATGATTT-ATTCTCAG-TAGTTTTTGATTTTTGACATGTGAT
1 CGATCGTTTTCATTTTTTGACTCATGATTTAATT-TCGGTTA-TTTTTCATTTCTGACATGTGAT
5385992 TTAATAT
64 TTAATAT
* ** * **
5385999 CGATCATTTTCATTTCTTTGACTCATGATTTAATGGCGGTTGTTTTTCATTTTCTGATTTGTGAT
1 CGATCGTTTTCATTT-TTTGACTCATGATTTAATTTCGGTTATTTTTCA-TTTCTGACATGTGAT
*
5386064 TTAATCT
64 TTAATAT
* *
5386071 CGATCGTTTTCATTTTTTGACTCACGGTTTAAT
1 CGATCGTTTTCATTTTTTGACTCATGATTTAAT
5386104 CCTGATCATT
Statistics
Matches: 139, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
70 33 0.24
71 71 0.51
72 35 0.25
ACGTcount: A:0.19, C:0.14, G:0.15, T:0.52
Consensus pattern (70 bp):
CGATCGTTTTCATTTTTTGACTCATGATTTAATTTCGGTTATTTTTCATTTCTGACATGTGATTT
AATAT
Found at i:5386431 original size:70 final size:69
Alignment explanation
Indices: 5385501--5397471 Score: 989
Period size: 70 Copynumber: 170.6 Consensus size: 69
5385491 NNNNNNNNNN
* *
5385501 TTAATCTCG-TCATTTTCATTTTTAATAACTCGTGGTTTAATCCTTA-TCGTTTTCA-TTTTTGA
1 TTAATCTCGATCATTTTCATTTTT--TGACTCGTGGTTTAAT-C-TAGTCATTTTCATTTTTTGA
5385563 CT-AGT-GAT
62 CTCA-TAG-T
* * * * *
5385571 TTAATC-CTAGTCATTTT--TTATTTCTAACTCGTGATTTAATCTCAGTCATTGTCATTTATTGA
1 TTAATCTCGA-TCATTTTCATT-TTT-TGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGA
5385633 CTCAT-GAT
62 CTCATAG-T
* ** ** * * * * ** ** *
5385641 TTAATCCCGATTGTTTTCATTTCCTAACTCATGATTTAAACCCGATTGTATTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
* *
5385706 GTGGT
65 ATAGT
* * * * *
5385711 TTAATC-CTGATCGTTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACT
*
5385775 CA-CGAT
64 CATAG-T
* * * * * * *
5385781 TTAATCTCGATCTTTTTTATTTTCTAACTCATAGTGTAATAC-AGATCATTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
*
5385845 CACAGT
64 CATAGT
* * * * * * * * *
5385851 TTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGGTTATTTTTCCTTCTCTGA--
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA-TTTTCATTTTTTGACT
*
5385914 CATGTGAT
64 CAT-AG-T
* * * ** * * * * * *
5385922 TTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGT-AGTTTTTGA-TTTTTGA-
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA--TTTTCATTTTTTGAC
*
5385984 -CATGTGAT
63 TCAT-AG-T
* * * * *
5385992 TTAATATCGATCATTTTCATTTCTTTGACTCATGATTTAATGGCGGTTGT--TTTTCATTTTCTG
1 TTAATCTCGATCATTTTCATTT-TTTGACTCGTGGTTTAAT--C--TAGTCATTTTCATTTTTTG
* **
5386055 ATTTGT-GAT
61 ACTCATAG-T
* ** *
5386064 TTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCT-GATCATTTTCATTTTTTGAAT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
* *
5386128 CGTGGT
64 CATAGT
* ** ** * * * * * * *
5386134 TTAATCTCGGTTGTTTTTGTTTTCTGTCTCTTGATTTAATTTTGGTCATTTTCATTTTTTGACTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACTC
*
5386199 ATGGT
65 ATAGT
* * *** * * *
5386204 TTAAT-TCCCATCACTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGA
1 TTAATCT-CGATCA-TTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTT-TGA
* **
5386267 TTGGT-GAT
62 CTCATAG-T
* ** * * * **
5386275 TTAATCCTTG-TTGTTTTCATTTTTTGACTCGTGATTTAATTTTGGT--TGTTTCATTATCTAAG
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCAT-TTTCATT-T-TTTG
*
5386337 A-TGC--GGT
61 ACT-CATAGT
* * * * *
5386344 CTAATCCCTC-A-CATTTTCATTTTATGACTCGTGGTTTATTGTAAGTCATTTTCATTTTCTGAC
1 TTAAT--CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5386407 TCATAGT
63 TCATAGT
* * * *
5386414 TTAATCTCGATCATTTTCATTTTCTGACCCATGGTTTAATCCT-GATCATTTTTCTTTTTTTGAC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCA-TTTTCATTTTTTGAC
** *
5386478 TGGTGGT
63 TCATAGT
* * ** * * * *
5386485 TTAATCTTGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
* *
5386550 ATGGC
65 ATAGT
** * * * * *
5386555 TTAATCAGGATTATTTTTATTTTTTGGCTCATGGTTTAATCATAGTCATTTTTATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5386620 GTGGT
65 ATAGT
* ** * * *
5386625 CTAATCGAGGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTCTTTTTTTGA
1 TTAATCTCGATC-ATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCA-TTTTCATTTTTTGA
**
5386689 -TGGGTAGT
62 CT-CATAGT
* * * * *
5386697 TTAATCTCAATCGTTTTCATTTTTTGACTTGTGGTTTAATCTCAGTCGTCTTCGA-TTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTC-ATTTTTTGACT
5386761 CAT-GAT
64 CATAG-T
* * * * * * * * *
5386767 TTAGTCTCGATCTTTTTTATTTTCTAACTCATAGTTTAATATGGGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACTC
* *
5386832 ACAAT
65 ATAGT
* * * * * * * *
5386837 TCAAACCCGGTCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCATTTT--TTGTTCTCTGA
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATT-TT-T-TGA
*
5386900 --CATGTGAT
62 CTCAT-AG-T
* * * ** * * * * * * *
5386908 TTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCCGT-AGTTTTTGA-TTTTTGA-
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA--TTTTCATTTTTTGAC
*
5386970 -CATGTGAT
63 TCAT-AG-T
* * * * * ** *
5386978 TTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAA-CGATGGTTGTTTTTCATTTTGTGA
1 TTAATCTCGATCATTTTCATTT-TTTGACTCGTGGTTTAATC--TAG-TCATTTTCATTTTTTGA
**
5387042 CTTGT-GAT
62 CTCATAG-T
* ***
5387050 TTAATCTGGATCATTTTCATTTTTTGACTCACAGTTTAATCCT-GATCATTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
*
5387114 CATGGT
64 CATAGT
* ** * * * *
5387120 TTAATCTCGGTTGC-TTTTTTTTTTTTGATTCGTGGTTTAATTTTGGTCGTTTTCATTTTTTGAC
1 TTAATCTC-GAT-CATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGAC
* * *
5387184 TTACAAT
63 TCATAGT
* * * *** * *
5387191 TTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTAGTCATTTTCATTTTTTTGA
1 TTAATCT-CGATC-ATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCA-TTTTTTGA
* *
5387254 TTCGT-GAT
62 CTCATAG-T
* ** * * * * * * ** * * * **
5387262 TTAATCTTTG-TTGTTTTTATTTTCTGACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAAA
1 TTAATC-TCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACT
*** *
5387326 CGCGGC
64 CATAGT
* * * * *
5387332 CTAATCCCTCG--CATTTTCATTTTATGACTCATGGTTTATTCTCAGTCATTTTCATTTTCTGAC
1 TTAAT--CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5387395 TCATAGT
63 TCATAGT
* * * * * * *
5387402 TTAATCTCAATCATTTTCATTTTCTAACCCATGGTTTAATC-ATGATCGTTTTTCTTTTTTTGAC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTA-G-TC-ATTTTCATTTTTTGAC
** *
5387466 TGGTGGT
63 TCATAGT
* ** * * * * *
5387473 TTAATC-CTGGTTGTTTCCATTTTTTTACTTGTGGTTTAATCTAGCTCATTTTTATTTTATGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
* *
5387537 CATGGC
64 CATAGT
** * *
5387543 TTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5387608 GTGGT
65 ATAGT
* * * *
5387613 GTAATCGT-GGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTCTTTTTTTG
1 TTAATC-TCGAT-CATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCA-TTTTCATTTTTTG
***
5387676 A-TGGGCAGT
61 ACT-CATAGT
* * ** * *
5387685 TTAAT-TCCAATCATTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTTTGACT
1 TTAATCT-CGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
** *
5387749 TGTGGT
64 CATAGT
* * ** * * * * *
5387755 TTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCTCGT-AGTTTTAATCTTCTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCA-TTTTCATTTTTTGACT
5387819 CACT-GT
64 CA-TAGT
* * * * * * * * *
5387825 TTAATCCCGATCAATTTCACTTTTTAACTCATGATTTAATTTCGATC-TTTT-TTTCTTCTCTGA
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATT-TT-T-TGA
*
5387888 --CATGTGAT
62 CTCAT-AG-T
* * ** * * * * *
5387896 TTAGTTTC-AGTGGTTTTGATTTTTTGACTCATGATTTATTCTCAAT-AGTTTTCGA-TTTTTGA
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA-TTTTC-ATTTTTTGA
*
5387958 --CATGTGAT
62 CTCAT-AG-T
* * * * ** * *
5387966 TTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACT-GTTGTTTTTCATTTTCTAA
1 TTAATCTCGATCATTTTCATTT-TTTGACTCGTGGTTTAAT--CTAG-TCATTTTCATTTTTTGA
**
5388030 CTTGT-GAT
62 CTCATAG-T
* ** **
5388038 TTAATTTCGATTGTTTTCATTTTTTGACTCACGGTTTAATCCT-GATCATTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
* *
5388102 CGTGGT
64 CATAGT
* * * * * *
5388108 TTAATCTCGGTTATTTTTC-TTTTTTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACT
1 TTAATCTCGATCA-TTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACT
* *
5388172 TATGGT
64 CATAGT
* * * *** * * *
5388178 TTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGA
1 TTAATCT-CGATC-ATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTT-TGA
*
5388241 TTCAT-GAT
62 CTCATAG-T
* ** * * * * * * * ** ***
5388249 TTAATCCTTG-TTGTTTTTATTTTCTAACTTGTGATTTAATTTTGCTTGTTTTCATTATCCAAGA
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATT-T-TTTGA
* *
5388313 CGC--GGT
62 CTCATAGT
* * * * *
5388319 CTAATATCTCG--CATTTTCATTTTATGACTCGTGATTTATTCTCAGTCATTTTCATTTTCTGAC
1 -TTA-ATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5388382 TCATAGT
63 TCATAGT
* * * * *
5388389 TTAATCTCGATCATTTTCATTTTCTGA-TCCATAGTTTAATCCTGATTCGTTTTTC-TTTTTTGA
1 TTAATCTCGATCATTTTCATTTTTTGACT-CGTGGTTTAAT-CT-AGTC-ATTTTCATTTTTTGA
** *
5388452 CTGGTGGT
62 CTCATAGT
* * ** * * *
5388460 TTAATC-CTGGT--TGTTTCTACTTTTTGACTTATGGTGTAATCTGGCTCATTTTCATTTTCTGA
1 TTAATCTC-GATCAT-TTTC-ATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGA
* *
5388522 CTCATGGC
62 CTCATAGT
** * * *
5388530 TTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCGTTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5388595 GTGGT
65 ATAGT
* * * * * * *
5388600 CTAATCGT-GGTCCTTTTTCTTTTTTTTACTTGTGGTTTAATCCCTA-TCATTTTTCTTTTTTTG
1 TTAATC-TCGAT-CATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCA-TTTTCATTTTTTG
5388663 A-T-AGGTAGT
61 ACTCA--TAGT
* * * * ** * * *
5388672 TTAATCCCAATCGTTTTCATTTTCTGACTTATAGTTTAATCCT-GATCGTTTTCATTTTCTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
** *
5388736 TGTGGT
64 CATAGT
* * ** * ** *** * *
5388742 TTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGCTTTCATCTTCTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
*
5388807 ATGGT
65 ATAGT
* * * *
5388812 TTAATCGCGATCATTTTCAGTTTTTTGACTTGCT-GTTTAATCTTAATCGTTCTTCATTTTTTTG
1 TTAATCTCGATCATTTTCA-TTTTTTGACTCG-TGGTTTAATC-TAGTCATT-TTCA-TTTTTTG
*
5388876 ACTTAT-GTT
61 ACTCATAG-T
* * * ** ***
5388885 TTCAT-TACGATCATTTTCATTTTTTGACTCGTGATTTAAACCCGATCGCATTCATTTTTTGACT
1 TTAATCT-CGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
*
5388949 CATGGT
64 CATAGT
* * * * *
5388955 TTAATCCCAATCATTTT--TCTTTTTCA-T--T--TTT--T-TA-TCATTCTT-ATTTTCTAACT
1 TTAATCTCGATCATTTTCAT-TTTTTGACTCGTGGTTTAATCTAGTCATT-TTCATTTTTTGACT
* *
5389008 CGTAGC
64 CATAGT
* ** * * * *
5389014 TTAAT-TCCAGTCATTTTCATTTCCTGACTCATGGTTTAATCTTATTCAATTT--TTTTCTGACT
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACT
** *
5389076 GGTGGT
64 CATAGT
* * * * * * *
5389082 TTAATCCCGATCATTTCCATTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTTCGGCTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
*
5389147 GT-GCT
65 ATAG-T
* * * * * * ** * *
5389152 TTAATCTAGGTCATTTTCTTTTTTTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTC-GTGGTTTAAT-CTAGTCATTTTCATTTTTTGACT
* *
5389216 CGATGGA
64 C-ATAGT
* ** * ** * * *
5389223 TTAATC-CAGGTTGTCTTTCATTTTTTAACTCGTACTTTAATCCCAGTCATTTTCGTTTCTTGAC
1 TTAATCTC-GATCAT-TTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGAC
5389287 TCAT-GAT
63 TCATAG-T
* * * *** * * * * ** *
5389294 TCAAACT-GGTCGCATTCATTTTCTAACTCATGGTTTAGTCCCGATCATTTTTTTTCATTTTTCG
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCA----TTTTCATTTTTTG
*
5389358 A-TCGT--T
61 ACTCATAGT
* *** * * ** * * * ** * * * ***
5389364 TTCAT-TTTTTGA--CTCATGGTTTAATCCCAATCATTT--TC--GT-TTTTTGACTCAATG--T
1 TTAATCTCGATCATTTTCATTTTTTGA-CTC-GTGGTTTAATCTAGTCATTTTCATTTTTTGACT
* *
5389419 -TTAAT
64 CATAGT
* *** * * * * * *
5389424 CT-CGGTCG-T--TTTCCTTTTTCTAG-CTAGTGGTTTAATCTCGGTCATTTTCATTTTTTAACT
1 TTAATCTCGATCATTTTCATTTT-TTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACT
* *
5389484 CGTGGT
64 CATAGT
* * * * *
5389490 TTAATC-CTTATCGTTTTCATTTTTTGACTAGTGATTTAATCCTAGTCATTTT--TTATTTCTAA
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATT-TTT-TGA
*
5389552 CTCGT-GAT
62 CTCATAG-T
* * * * ** ** ** *
5389560 TTAATCTC-AGTCATTGTCATTTATTGACTCATGATTTAATCCCGATTGTTTTCATTTCCTAACT
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
*
5389624 CA-CGAT
64 CATAG-T
* * ** * * * *
5389630 TTAAACTTGATTGTATTCATTTTTTAACTCGTGGTTTAATCCTGGCCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
*
5389695 ATGGT
65 ATAGT
** * * * * * * * *
5389700 TTAATCTC-AGT-AGTTTTCGGTTTTTGACTCATGATTTAGTCTCGATCTTTTTTATTTTCTAAC
1 TTAATCTCGA-TCA-TTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGAC
5389763 TCATAGT
63 TCATAGT
* * * **** ** *
5389770 TTAATATGGGTCATTTTCATTTTTTGACTCACAATTTAATCCCGGTCATTTTCATTTTTTAACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
*
5389835 GT-GAT
65 ATAG-T
* * * * * ** * *
5389840 TTAATTTCGATCATTTT--TTGTTCTCTGACAT-GTGATTTAGTTTCGATGGTTTTGATTTTCTG
1 TTAATCTCGATCATTTTCATT-TT-T-TGAC-TCGTGGTTTAATCTAG-TCATTTTCATTTTTTG
5389902 ACTCAT-GAT
61 ACTCATAG-T
* * * * * * *
5389911 TTATTCTC-AGT-AGTTTTTGA-TTTTTAACAT-GTGATTTAATATTGATCATTTTCATTTCTCT
1 TTAATCTCGA-TCA--TTTTCATTTTTTGAC-TCGTGGTTTAATCTAG-TCATTTTCATTT-TTT
5389972 GACTCAT-GAT
60 GACTCATAG-T
* * * * * * *
5389982 TTAATGATGGTTGC-TTTTCATTTTTTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGAC
1 TTAAT-CTCGAT-CATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGAC
* *
5390046 TCGTGGT
63 TCATAGT
* ** ** * * * *
5390053 TTAATCTCGGTTGTTTTTGTTTTTTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCA-TTTTTTGACT
*
5390118 CGT-GAT
64 CATAG-T
* * * * * * ** **
5390124 TTAATCCTTG-TTATTTTCATTTTTTGACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAGA
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATT-T-TTTGA
* *
5390188 CGC-GA-T
62 CTCATAGT
* * * * *
5390194 CTAATCCCTCG-T-ATTTTCATTTTATGACTCGTGGTTTACTCTCAATCATTTTCATTTTCTGAC
1 TTAAT--CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5390257 TCATAGT
63 TCATAGT
* * * * * *
5390264 TTAATCTTGATCATTTTCATTTTCTGACCCATGGTTTAATCCT-GATCATTTTTCTTTTTTTCAC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCA-TTTTCATTTTTTGAC
**
5390328 TGGT-GCT
63 TCATAG-T
* * * * * * *
5390335 TTAATC-CTAGCTTTTTTCATTTTTTGACTTGTAGTTTAATCTGGCTCATTTTCATTTTCTGACT
1 TTAATCTCGATC-ATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
* * *
5390399 TATGGC
64 CATAGT
* * * * *
5390405 TTAGTCAAC-ATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTAACT
1 TTAATC-TCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACT
* *
5390469 CGTGGT
64 CATAGT
* * * *
5390475 CTAATCGT-GGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCATA-TCATTTTCTTTTTTTGA
1 TTAATC-TCGAT-CATTTTCATTTTTTGACTCGTGGTTTAAT-C-TAGTCATTTTCATTTTTTGA
* **
5390538 TTGGTAGT
62 CTCATAGT
* * * * * * * *
5390546 TTAATCCCAATCGTTTTCATTTTCTGACTTGTGGTTTAATCATGGTCTTTTTCATTTTTTGACTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5390611 GTGGT
65 ATAGT
* * * ** * * * * *
5390616 TTAATATGGGTTGTTTTCATTTTTTGACTCATGCTTTAATCCCT-GTCGTTTTCATCTTTCGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCATTTTCATTTTTTGACT
**
5390680 CACGGT
64 CATAGT
* * * * * * * *
5390686 TTAAT-TGCGGTCATTTTCATTTTTTTGACTTGCGATTTAATCTCGGTCGTTCTTTATTTTTCGA
1 TTAATCT-CGATCATTTTCA-TTTTTTGACTCGTGGTTTAATCT-AGTCATT-TTCATTTTTTGA
*
5390750 CTCGT-GT
62 CTCATAGT
* * * * * *** *
5390757 CTTAATCAT-GATCGTTTTCATTTCTTGACTCGTGATTTAAAC-CGATCGCATTCATTTTCTGAC
1 -TTAATC-TCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGAC
*
5390820 TCATGGT
63 TCATAGT
* * * * * * *
5390827 TTAATCCCAATCATTTT--TCTTTTT--CAC-T--TTT--T-TA-TCGTTCTCATTTTCTAACTC
1 TTAATCTCGATCATTTTCAT-TTTTTGACTCGTGGTTTAATCTAGTCATTTTCATTTTTTGACTC
* *
5390881 GTAGC
65 ATAGT
* ** * *
5390886 TTAAT-TCCAATCATTTTCATTTCCTGACTCATGGTTTAATCCT-GTTCATTTTTC-TTTTTCAG
1 TTAATCT-CGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCA-TTTTCATTTTT-TG
*** * *
5390948 ACAGGTGGG
61 ACTCATAGT
* * * * * * * * *
5390957 TTAATC-CCAGTCATTTCCATTTTCTGGCTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCT
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACT
*
5391021 CGT-GCT
64 CATAG-T
* * * * * * ** *
5391027 TTAATCTAGGTCAATTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCATTTTCTGAC
1 TTAATCTCGATCATTTTCATTTTT-TGACTC-GTGGTTTAAT-CTAGTCATTTTCATTTTTTGAC
* *
5391090 TCGTGGT
63 TCATAGT
** * ** * ** * *
5391097 TTAATCGAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCTCTGTCATTTTCATTTCTTGACT
1 TTAATC-TCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACT
5391162 CAT-GAT
64 CATAG-T
* * * *** * * * *
5391168 TCAAACTTG-TCGCATTCATTTTCTAACTCGTGGTTTAGTCTCAATCATTTTTTTTTCATTTTTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA-----TTTTCATTTTTT
*
5391232 GATCGTTTTCAT-TT
60 GA-C----TCATAGT
* ** *** * * *
5391246 TCTGA-CTCGAGGTCTAATCCCAATCATTTTCGTTTTCTGACTCAACGTTTAATATCGATCGTTT
1 T-TAATCTCGA--TC--AT---TTTCA-TT----TTT-TGACTCGTGGTTTAATCTAG-TCATTT
* *
5391310 TC-TTTTTTCTAGCT-AGTGGT
51 TCATTTTTT-GA-CTCA-TAGT
* * *
5391330 TTAATCGCGGTCATTTTCATTTTTTGACTCGTGGTTTAATCCTTA-TCGTTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-C-TAGTCATTTTCATTTTTTGACT
5391394 -AGT-GAT
64 CA-TAG-T
* * * * * * *
5391400 TTAATCTTGGTCATTTT--TTATTTATAACTCATGATTTAATCTCAGT-AGTTGTCATTTCTTGA
1 TTAATCTCGATCATTTTCATT-TTT-TGACTCGTGGTTTAATCT-AGTCA-TTTTCATTTTTTGA
5391462 CTCAT-GAT
62 CTCATAG-T
** ** * ** * * ** ** * *
5391470 TTAATC-CTGATTGTTTTCATTTCCTAACTCACGATTTAAACCCGATTGTATTCATTTTTTAACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
* *
5391534 CGTGGT
64 CATAGT
* * * * *
5391540 TTAATC-CTGATCGTTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACT
***
5391604 CGCGGT
64 CATAGT
* * * * * * **
5391610 TTAATCTCGATCGTTTTTATTTTCTAACTCATAGTTTAATACGGGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
5391675 ATAGT
65 ATAGT
* * * * ** ** *
5391680 TTAATCCCGATCATTTTAATTTTTTGACTCGTGGTTTAATTTCGGTTGTTTTTGTTTTCTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACTC
*
5391745 A-CGAT
65 ATAG-T
* * * * * * * ** * **
5391750 TTAATTTTGGTCATTTTCATTTTTTGACTTGCGATTTAATTCCCA-TCGCTTTC-TGACTCATGA
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-T-CTAGTCATTTTCAT--TTTTTGA
*
5391813 TTCAT-GAT
62 CTCATAG-T
* * * *
5391821 TTAATC-CTGGTCATTTTCATTTTTCATTTTGACTAGTGATTTAATCCTGGTCATTTT--TTATT
1 TTAATCTC-GATCATTTTCA---TT--TTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATT-TT
* *
5391883 TCTAACTCGT-GAT
58 T-TGACTCATAG-T
* * * * ** ** *
5391896 TTAATCTC-AGTCGTTGTCATTTTTTGAC-CATGATTTAATCCT-GATTGTTTTCATTTCCTAAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGAC
*
5391958 TCA-CGAT
63 TCATAG-T
* * * ** * * * *
5391965 TTAAACCCAATTGTATTCATTTTTTGACTCGTGGTTTAATTCTGGTCGTTTTCA-TTTTTGACTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACTC
*
5392029 ATGGT
65 ATAGT
* * * * *
5392034 TTAATC-CTGTTCATTTTTC-TTTTTCTGACTGGTGGGTTAATCTCGATCATTTTCATTTTCTGA
1 TTAATCTC-GATCA-TTTTCATTTTT-TGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGA
*
5392097 CTCATGGT
62 CTCATAGT
* * * * * *
5392105 TTAATCT-TAGTCGTTTCCATTTTTTGGCTCATGCTTTAATCTAGGTCATTTTC-TTTTTCTGAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTA-GTCATTTTCATTTTT-TGAC
5392168 TCA-ATGT
63 TCATA-GT
* ** ** * ** *
5392175 TTAATC-CCACTTGTTTTTGTTTTTTGACTCGTGGTCTAATCTAGGTTGTTTTTCATTTTTTAAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTA-G-TCATTTTCATTTTTTGAC
* *
5392239 TCGTACT
63 TCATAGT
* * * * * * * *** * *
5392246 TTAATC-CTAGTTATTTTCATTTCTTGACTCATGATTCAAACT-GTTCGCATTCTTTTTTTAACT
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
* *
5392309 CGTGGT
64 CATAGT
* * * * * **
5392315 TTAGTCCCGATCATTTTTCGATTGTTTTCATTTTCTGACTCGCGGTTTAATCCTAATCGTTTTTG
1 TTAATCTCGATCA-TTTTC-A------T--TTTT-TGACTCGTGGTTTAAT-CTAGTCATTTTCA
*
5392380 TTTTCTGACTCA-ATGT
54 TTTTTTGACTCATA-GT
* * ** * * *
5392396 TTAATCTCGATCGTTTTCCTTTTTCT-AGCAAGTGGTTTAATCTCGATCATTTTCATTTTCTAAC
1 TTAATCTCGATCATTTTCATTTTT-TGA-CTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGAC
** *
5392460 TTGTGGT
63 TCATAGT
* * * * * *
5392467 TTAATC-CTTATCGTTTTCACTTTTTGACTAGTGATTTAATCCTAGTCATTTT--TTATTTCTAA
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATT-TTT-TGA
*
5392529 CTCGT-GAT
62 CTCATAG-T
* * * * * * * ** ** *
5392537 TTAATCTCAATCGTTGTCATTTCTTGACTCATGATTTAATCTTGATTGTTTTCATTTCGTAACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
*
5392602 A-CGAT
65 ATAG-T
* * ** * *
5392607 TTAAACCCGATTGTATTCATTTTTTGACTCGTGGTTTAATCCT-GATCGTTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
*
5392671 CATGGT
64 CATAGT
* * * * * * * ** * *
5392677 TTAATCTTGGTCGTTTTTATTTTCTGACTCGCGGTTTAATCTCGATTTTTTTTATTTTTTAACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
*
5392742 GTAGT
65 ATAGT
* * * * *** * *
5392747 TTACTATGGGTCATTTTCATTTTTTGACTCACAGCTTAATCCT-GATCATTTTTATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
* *
5392811 CGTGGT
64 CATAGT
* * * * * * * *
5392817 TT-ATCTCGGTTCCTTTT-GTTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACT
* **
5392880 TACGGT
64 CATAGT
* * * *** * * *
5392886 TTAAT-TCCCATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGA
1 TTAATCT-CGATC-ATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTT-TGA
* *
5392949 TTCGT-GAT
62 CTCATAG-T
* ** * * * ** **
5392957 TTAATCCTTG-TTTTTTTCATTTTTTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGA
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATT-T-TTTGA
*
5393021 -TGC--GGT
62 CT-CATAGT
* * * *
5393027 CTAATCCCTCG--CATTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTCATTTTCTGAC
1 TTAAT--CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5393090 TCATAGT
63 TCATAGT
* * * * ** * *
5393097 TTAACCTTGATCATTTTCATTTTTTGA-TCCATGATTTAATCCCGATCGTTTTTCTTTTTTTGAC
1 TTAATCTCGATCATTTTCATTTTTTGACT-CGTGGTTTAATCTAG-TC-ATTTTCATTTTTTGAC
** *
5393161 TGGTGGT
63 TCATAGT
* * * * *
5393168 TTAATC-CTGGT--TGTTTCTAGTTTTTGACTTGTGGTTTAATCTAGACCATTTTCATTTTCTGA
1 TTAATCTC-GATCAT-TTTC-ATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGA
*
5393230 CTCAT-GAC
62 CTCATAG-T
** * * * *
5393238 TTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGT-ATTTTTAATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCA-TTTTCATTTTTTGACT
** *
5393302 TGTGGT
64 CATAGT
* * * * ** * * * *
5393308 TTAATCCCTATCATTTTTCTTTTTTTGA-TGGGTACTTTAATCCCAATCGTTTTCATTTTCTGAC
1 TTAATCTCGATCA-TTTTCATTTTTTGACT-CGTGGTTTAAT-CTAGTCATTTTCATTTTTTGAC
**
5393372 TTGTAGT
63 TCATAGT
* * * * * *
5393379 TTAATCCCGATCGTTTTCATTTTTTGATTTGTGGTTTAATCTGGGC-TGTTCTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAGTCAT-TT-TCATTTTTTGACT
*
5393443 CATTGT
64 CATAGT
* * * * ** ** **
5393449 TTAATCCCCG-TCGTTTTCATCTTCTGACTCACGGTTTAATCGCGGTCATTTTTGTTTTTTTGAC
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCA-TTTTCATTTTTTGAC
****
5393513 TTGCGGT
63 TCATAGT
* * * * * * * *
5393520 TTAATCTCGGTCGTTCTTCATTTTTTGACTTGTGTTTTAATCACAATCGTTTTCATTTCTTGACT
1 TTAATCTCGATCATT-TTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACT
5393585 -AGT-GAT
64 CA-TAG-T
* * *** * ** * * *
5393591 TTAAACCCGATCGCATTCATTTTCTGACTAATGGTTTAATCCCAATCATTTT--TCTTTT---TC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
5393651 AT--T
65 ATAGT
* * * ** * * * * **
5393654 TT--T-T-TATCGTTCTCATTTCCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTCCTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACTC
*
5393715 ATGGT
65 ATAGT
* * *
5393720 TTAATC-CTGTTCATTTTTC-TTTTTCTGACT-GATGGTTTAATCCCAGTCATTTCCATTTTTTG
1 TTAATCTC-GATCA-TTTTCATTTTT-TGACTCG-TGGTTTAAT-CTAGTCATTTTCATTTTTTG
*
5393782 ACTCATGGT
61 ACTCATAGT
* * * * *
5393791 TTAATCT-TAGTCATTTCCATTTTCTTG-CTAGTGCTTTAGTCTAAGTCATTTTC-TTTTTCTGA
1 TTAATCTCGA-TCATTTTCATTTT-TTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTT-TGA
5393853 CTCA-ATGT
62 CTCATA-GT
* ** * * * * * ** *
5393861 TTAATC-CCACTTGTTTTCGTTTTCTAACTCATGGTTTAATCCATGTTGTTTTTCATTTTTTAAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTA-G-TCATTTTCATTTTTTGAC
* *
5393925 TCGTACT
63 TCATAGT
* * * * * * *** * *
5393932 TTAATCTC-AGTCATTTTCATTTCTTAACTCATGATTCAAACTAGTCGCATTCATTTTCTAACTC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTAGTCATTTTCATTTTTTGACTC
* *
5393996 GTGGT
65 ATAGT
* * * * ** * *
5394001 TTAGTCTCGATCATTTTTTTTTCATTTTTCGA-TCGT--TTTCAT-T-TTC-TGACTCGTGGTTT
1 TTAATCTCGATCA-----TTTTCATTTTTTGACTCGTGGTTTAATCTAGTCAT-TTTCAT-TTTT
* * *
5394060 TAATCCCAATCATT
59 TGA-CTC-AT-AGT
* * * *** * * * ** * * ** *
5394074 TTCATTTTCTGACTCAATGTTTAATCTCGGTCATTTTCATTTTTTGA-CTCGTGGTTTAATCCTT
1 TT-AATCTC-GA-TC-AT-TTTCAT-TTTTTGA--CTCGTGGTTTAATCTAGTCATTT--TCATT
**
5394138 ATCGTTT---TCATTTT
56 -T--TTTGACTCATAGT
* * * * * *
5394152 TTGA-CTGGTGATTTAATCTTGGTCATTTTTTATTTATGACTCGTGATTTAATCTCAGTCGTTGT
1 TTAATCT--CGA--TCAT-TT--TCA----TT-TTT-TGACTCGTGGTTTAATCT-AGTCATTTT
5394216 CATTTTTTGACTCAT-GAT
52 CATTTTTTGACTCATAG-T
** * * * * * ** ** *
5394234 TTAATC-CTGATTGTTTTAATTTCTTAACTCGTGATTTAAACCCGATTGTATTCATTTTTTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
* *
5394298 CGTGGT
64 CATAGT
* *** * * * *
5394304 TTAATC-CTGGTTGGTTTCATTTTTTGACTCATGGTTTAATCTCGGTCGTTTTCATTTTCTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACT
5394368 CAT-GAT
64 CATAG-T
* * * * * **
5394374 TTAATCTCGATCTTTTTTATTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
5394439 ATAGT
65 ATAGT
* * * * * *
5394444 TTAATCTC-AGTTATTTTCATTTTTTAACTTGTGATTTAATTTCGATCATTTT--TTGTTCTCTG
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATT-TT-T-TG
5394506 A--CATATGAT
61 ACTCATA-G-T
* * * ** * * * ** *
5394515 TTAGTTTCGGTGTTTTTGATTTTCTGACTCATCATTTATTCTCAGT-AGTTTTCGA-TTTTTGA-
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA-TTTTC-ATTTTTTGAC
*
5394577 -CATGTGAT
63 TCAT-AG-T
* * * * * * **
5394585 TTAATATCGATCATTTTCATTTCTTCGACTCATGATTTAATGATGATTGTTTTTCATTTTTTGAC
1 TTAATCTCGATCATTTTCATTT-TTTGACTCGTGGTTTAAT-CT-AGTCATTTTCATTTTTTGAC
**
5394650 TTGT-GAT
63 TCATAG-T
* * **
5394657 TTAATCTTGATCGTTTTCATTTTTTGACTCACGGTTTAATCCT-GATCATTTTCATTTTTTGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
* *
5394721 CGTGGT
64 CATAGT
* ** * * * * *
5394727 TTAATCTCGGTTC-TTTTTGTTTTCTGACTCATGATTTAATTTTGGTCATTTT--TTTTTT-ACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACT
* **
5394788 TACGGT
64 CATAGT
* * * *** * * *
5394794 TTAAT-TCCCATCGCTTTT-AATCCCTGACTCATGATTTAATCTTGGTCATTTTCATTTTTTTGA
1 TTAATCT-CGATC-ATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCA-TTTTTTGA
*
5394857 TTCAT-GAT
62 CTCATAG-T
* ** * * * * ** * * * **
5394865 TTAATCCTTG-TTGTTTTCATTTTCTGACTCGTGATTTAATTTTGGTTGTTTTCATTATCTCAGA
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACT
* *
5394929 CGTGGT
64 CATAGT
* * * * * * *
5394935 CTAATCCTTCG--CATTTTTATTTTATGGCTCGT-GTTTTATTTCAGTCATTTTCATTTTCTGAC
1 TTAAT-C-TCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
5394997 TCATAGT
63 TCATAGT
* * * * *
5395004 TTAATCTCGATCATTTTCATTTTCTGAC-CAATAGTTTAATC-ATGATCGTTTTTCTTTTTTTGA
1 TTAATCTCGATCATTTTCATTTTTTGACTC-GTGGTTTAATCTA-G-TC-ATTTTCATTTTTTGA
* ** *
5395067 TTGGTGGT
62 CTCATAGT
* * *
5395075 TTAATC-CTAGT--TGTTTCTATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGA
1 TTAATCTCGA-TCAT-TTTC-ATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGA
* *
5395137 CTCATGGC
62 CTCATAGT
** * *
5395145 TTAATCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5395210 GTGGT
65 ATAGT
* * * * * * ** *
5395215 TTAATCCCTATCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCCTAATTGTTTTCATTTTCTGAC
1 TTAATCTCGATCA-TTTTCATTTTTTGACT-CGTGGTTTAAT-CTAGTCATTTTCATTTTTTGAC
** *
5395279 TTGTGGT
63 TCATAGT
* * * * * * ** *
5395286 TTAATC-CTGGTCGTTTTCATTTTCTGATTTGTGGTTTAATCTGGGTTGTTCTCATTTTTTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGACT
*
5395350 CATGGT
64 CATAGT
* * ** * ** *
5395356 TTAATCCCCG-TCATTTTCATCTTCCGACTCATGGTTTAATCGCGATCATTTTCATTTTTTTAAC
1 TTAAT-CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCA-TTTTTTGAC
* **
5395420 TTACGGT
63 TCATAGT
* * * * * *
5395427 TTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTCATC-ACGATCGTTTTCATTTCTTGAC
1 TTAATCTCGATCATT-TTCATTTTTTGACTCGTGGTTTAATCTA-G-TCATTTTCATTTTTTGAC
*
5395491 TCGT-GAT
63 TCATAG-T
* * *** * * * *
5395498 TTAAACCCGATCGCATTCATTTTCTGACTCATGGTTTAATCCCAATC-TTTT--TTCTTTT---T
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATT-TTTTGACT
**
5395557 CATTTTT
64 CA-TAGT
** * * ** * * **
5395564 TTATAGT-TC--TCATTTTCTAACTCGTAGCTTAATTC-CAG-TT-AT-T-TTCATTTCCTAACT
1 TTA-A-TCTCGATCATTTTC--A-T--T-TTTTGACTCGTGGTTTAATCTAGTCATTTTC-ATTT
** * * *
5395621 CATG-GT-TTAAT
57 TTTGACTCATAGT
* * * ** ** ** * *
5395632 CCT-GT-TC-AT--TTTTCTTTTGCTGACTAATGGTTTAATCCCGATCATTTCCATTTTCTGACT
1 -TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
*
5395692 CATGGT
64 CATAGT
* * * * * * * *
5395698 TTAATCT-TAGTCGTTTCCATTTTCTGGCTCATGCTTTAGTCTAGGTCATTTTC-TTTTTTCGAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTA-GTCATTTTCATTTTTT-GAC
5395761 TCA-ATGT
63 TCATA-GT
* * ** *
5395768 TTAATCTC-A-C-TTGTCTTTGTTTTCTGACTCGTGGTTTAATCTAGGTTGTTTTTCATTTTTTA
1 TTAATCTCGATCATTTTC-AT-TTTT-TGACTCGTGGTTTAATCTA-G-TCATTTTCATTTTTTG
* *
5395830 ACTCGTACT
61 ACTCATAGT
* * * ** * * * * *
5395839 TTAATCAC-AGTCATTTTCATTTCTTGACTCATCATTAAAACTGGTCGCA-TTT-ATTTTCTAAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCTAGT--CATTTTCATTTTTTGAC
*
5395901 TCATGGT
63 TCATAGT
* * * * *
5395908 TTAGTC-CTGATCA-TTT--TTTTTT-A----T--TTT--TCGA-TCGTTTTCATTTTCTGACTT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTAGTCATTTTCATTTTTTGACTC
* *
5395959 GTGGT
65 ATAGT
* * * * * * ** * *
5395964 ATAATC-CGAATCGTTTTCCTTTTCTGACTCAAT-GTTTAATCTCGATTGTTTTCCTTTCTCT-A
1 TTAATCTCG-ATCATTTTCATTTTTTGACTC-GTGGTTTAATCTAG-TCATTTTCATTT-TTTGA
*
5396026 GCT-AGTGGT
62 -CTCA-TAGT
* * * * *
5396035 TTAATCT-TAGTCATTTTTATTTTCTAACTCGTGGTTTAATCCTTA-TCTTTTTCA-TTTTTGAC
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAAT-C-TAGTCATTTTCATTTTTTGAC
5396097 T-AGT-GAT
63 TCA-TAG-T
* * * *
5396104 TTAATC-CTGGTCATTTT--TTATTTATGACTCGTGATTTAATCTCAGTCGTTGTCATTTTTTGA
1 TTAATCTC-GATCATTTTCATT-TTT-TGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGA
* *
5396166 TTAAT-GAT
62 CTCATAG-T
** * * * * * ** *
5396174 TTAATCTCGATTGTTTTCATTTCTTAACTCGTGATTTAAACTCGATTGTATTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
*
5396239 GTAGT
65 ATAGT
* * * * * *
5396244 TTAATC-CTGGTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTCTGACT
1 TTAATCTC-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACT
*
5396308 C-GAGAT
64 CATAG-T
* * * * * * ** *
5396314 TTAATCTGGATCTTTTTTATTTTCTAACTCGTAGTTTAATACGGGTCATTTTTATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAGTCATTTTCATTTTTTGACTC
*
5396379 ACAGT
65 ATAGT
* * * * * * * * *
5396384 TTAATC-CCAGTCATTTTCATTTTTTAACTCATGATTTAATTTCGGTCATTTTTCGTTCTCTGA-
1 TTAATCTCGA-TCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCA-TTTTCATTTTTTGAC
*
5396447 -CATGTGAT
63 TCAT-AG-T
* * * ** * * * * *
5396455 TTAGTTTCGGTGGTTTTGATTTTTCTGACTCATGATTTATTCTCAGT-AGTTTTTGA-TTTTTGA
1 TTAATCTCGATCATTTTCATTTTT-TGACTCGTGGTTTAATCT-AGTCA--TTTTCATTTTTTGA
5396518 --CATATGAT
62 CTCATA-G-T
* * * * * * ** *
5396526 TTAATATCGATCATTTTCATTTCTCTAACTCATGATTTAA-CGACGGTTGTTTTTCA-TTTCTGA
1 TTAATCTCGATCATTTTCATTT-TTTGACTCGTGGTTTAATCTA--G-TCATTTTCATTTTTTGA
**
5396589 CTTGT-GAT
62 CTCATAG-T
* * ** * *
5396597 TTCATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCT-GATCATTTTCAATTTTTAACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
* *
5396661 CGTGGT
64 CATAGT
* ** ** * * * * * * *
5396667 TTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGCCTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACTC
**
5396732 ACGGT
65 ATAGT
* * * ** * * *
5396737 TTAAT-TCCCATCGCTTTT-GTTCCTTGACTCATGATTTAATCTTGGTCATTTTCATTTTTCTGA
1 TTAATCT-CGATC-ATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTT-TGA
*
5396800 CTCGT-GAT
62 CTCATAG-T
* ** * * * * ** * *
5396808 TTAATCCTTG-TTGTTTTCATTTTCTGACAT-GTGATTTAATTTTTGTTGTTTTCA-TTATCGA-
1 TTAAT-CTCGATCATTTTCATTTTTTGAC-TCGTGGTTTAA-TCTAGTCATTTTCATTTTTTGAC
** *
5396869 AGATGCGGT
63 TCAT--AGT
* * * * * *
5396878 CTAATCCCTCG-T-ATTTTCATTTTATGATTCGTGGTTTATTCTCAGTCATTTTCATTTTCTAAC
1 TTAAT--CTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCT-AGTCATTTTCATTTTTTGAC
* *
5396941 ACATAAT
63 TCATAGT
* * * *
5396948 TTAATCTCGATCATTTTTATTTTTTGACCCATGGTTTAATCCT-GATCATTTT--TTTTTTTACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT-CTAG-TCATTTTCATTTTTTGACT
** *
5397010 GGTGGT
64 CATAGT
* * ** * * * *
5397016 TTAATCTTGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTTATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAG-TCATTTTCATTTTTTGACTC
*
5397081 ATAGC
65 ATAGT
** * * *
5397086 TTAATCAGGATTATTTTTATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTC
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
* *
5397151 GTGGT
65 ATAGT
* * * * *
5397156 TTAATCGT-GGTCCTTTTTCATTTTTTAACTCATGGTTTAATCCCTA-TCATTTT--TTTTATG-
1 TTAATC-TCGAT-CATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCATTTTCATTTTTTGA
**
5397216 --GGTAG-
62 CTCATAGT
* * * * * * * *
5397221 TTAATCCCAATCATTTTCATTTTTTGACTTGTGGTTTAATCTTGGTCGTTTTCATTTTCTGATTT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTC
*
5397286 ATGGT
65 ATAGT
* * ** * * * *
5397291 TTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCTA-TCGTTTTCATCTTTCGACT
1 TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAAT--CTAGTCATTTTCATTTTTTGACT
**
5397355 CACGGT
64 CATAGT
* * * * * ** *
5397361 TTAATCGCGATCATTTTCAATTTTTTGACTTGCGATTTAATCTCGATTGTTCTTCATTTTTTTAC
1 TTAATCTCGATCATTTTC-ATTTTTTGACTCGTGGTTTAATCTAG-TCATT-TTCATTTTTTGAC
*
5397426 TCGT-GT
63 TCATAGT
* * * *
5397432 CTTAATCACGATCGTTTTCATTTCTTGACTCGTGATTTAA
1 -TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAA
5397472 ACCCGATCGC
Statistics
Matches: 8652, Mismatches: 2346, Indels: 1805
0.68 0.18 0.14
Matches are distributed among these distances:
54 1 0.00
55 4 0.00
56 23 0.00
57 8 0.00
58 4 0.00
59 107 0.01
60 24 0.00
61 9 0.00
62 8 0.00
63 16 0.00
64 42 0.00
65 44 0.01
66 47 0.01
67 63 0.01
68 229 0.03
69 622 0.07
70 4168 0.48
71 2290 0.26
72 579 0.07
73 75 0.01
74 44 0.01
75 29 0.00
76 29 0.00
77 14 0.00
78 12 0.00
79 22 0.00
80 20 0.00
81 34 0.00
82 27 0.00
83 8 0.00
84 15 0.00
86 10 0.00
87 9 0.00
91 2 0.00
92 14 0.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (69 bp):
TTAATCTCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTAGTCATTTTCATTTTTTGACTCA
TAGT
Found at i:5386806 original size:212 final size:212
Alignment explanation
Indices: 5386387--5386831 Score: 508
Period size: 212 Copynumber: 2.1 Consensus size: 212
5386377 GTTTATTGTA
* * * * ** * *
5386387 AGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATC-ATTTTCATTTTCTGACCCATGGTTT
1 AGTCATTTTCATTTTTTGACTCGTGGTCTAATCGAGGTCTTTTTTCATTTTCTGACCCATGGTTT
* *** *
5386451 AATCCTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATCTTGGTTGTTTCCATTTTTTGACTTG
66 AATCCTGATCATTTTTCTTTTTTTGACTGGTAGTTTAATCTCAATCGTTTCCATTTTTTGACTTG
* * * * * *
5386516 TGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTTATTTTTTG
131 TGGTTTAATCTAGCTCATCTTCATTTTCTGACTCATGACTTAATCACGATTATTTTTATTTTCTA
* *
5386581 GCTCATGGTTTAATCAT-
196 ACTCATAGTTTAAT-ATG
* * * *
5386598 AGTCATTTTTATTTTTTGACTCGTGGTCTAATCGAGGTCTTTTTTCATTTTTTGACTCGTGGTTT
1 AGTCATTTTCATTTTTTGACTCGTGGTCTAATCGAGGTCTTTTTTCATTTTCTGACCCATGGTTT
*
5386663 AATCCCT-ATCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCTCAATCGTTTTCATTTTTTGACT
66 AAT-CCTGATCATTTTTCTTTTTTTGACT-GGTAGTTTAATCTCAATCGTTTCCATTTTTTGACT
* * * *
5386726 TGTGGTTTAATCTCAG-TCGTCTTCGATTTT-TGACTCATGATTTAGTCTCGATCT-TTTTTATT
129 TGTGGTTTAATCT-AGCTCATCTTC-ATTTTCTGACTCATGACTTAATCACGAT-TATTTTTATT
5386788 TTCTAACTCATAGTTTAATATG
191 TTCTAACTCATAGTTTAATATG
*
5386810 GGTCATTTTCATTTTTTGACTC
1 AGTCATTTTCATTTTTTGACTC
5386832 ACAATTCAAA
Statistics
Matches: 195, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
211 34 0.17
212 151 0.77
213 10 0.05
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (212 bp):
AGTCATTTTCATTTTTTGACTCGTGGTCTAATCGAGGTCTTTTTTCATTTTCTGACCCATGGTTT
AATCCTGATCATTTTTCTTTTTTTGACTGGTAGTTTAATCTCAATCGTTTCCATTTTTTGACTTG
TGGTTTAATCTAGCTCATCTTCATTTTCTGACTCATGACTTAATCACGATTATTTTTATTTTCTA
ACTCATAGTTTAATATG
Found at i:5387008 original size:71 final size:70
Alignment explanation
Indices: 5386897--5387080 Score: 192
Period size: 71 Copynumber: 2.6 Consensus size: 70
5386887 TTTTGTTCTC
* * * ** * *
5386897 TGACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTC-TCCGTAGTTTTT
1 TGACATGTGATTTAATATCGATCATTTTCATTTTCTGACTCATGATTTA-ACAT-CGTAGTTTTT
*
5386961 GATTTT-
64 CATTTTG
* *
5386967 TGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAACGATGGTTGTTTTT
1 TGACATGTGATTTAATATCGATCATTTTCATTT-TCTGACTCATGATTTAAC-ATCGTAGTTTTT
5387032 CATTTTG
64 CATTTTG
* * * *
5387039 TGACTTGTGATTTAATCTGGATCATTTTCATTTTTTGACTCA
1 TGACATGTGATTTAATATCGATCATTTTCATTTTCTGACTCA
5387081 CAGTTTAATC
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
70 28 0.29
71 37 0.39
72 31 0.32
ACGTcount: A:0.20, C:0.13, G:0.17, T:0.51
Consensus pattern (70 bp):
TGACATGTGATTTAATATCGATCATTTTCATTTTCTGACTCATGATTTAACATCGTAGTTTTTCA
TTTTG
Found at i:5387173 original size:106 final size:105
Alignment explanation
Indices: 5385691--5387864 Score: 377
Period size: 106 Copynumber: 20.6 Consensus size: 105
5385681 CCCGATTGTA
* * * * * *
5385691 TTCATTTTTTGACTCGTGGTTTAATCCTGATCGTTTTCATTTTTTGACTCATGGTTTAATCTTGG
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATC-CGG
* * * ** * * *
5385756 TCG-TTTTCATTTTCTGACTCACGATTTAA-TCTCGATCTTT
65 TTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAG-TCATT
* * * * * * ** * *
5385796 TTTATTTTCTAACTCATAGTGTAATACAGATCATTTTCATTTTTTGACTCACAGTTTAATCCCGA
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCGGT
* * * * *
5385861 T-CATTTTCATTTTTTAACTCGTGATTTAATT-TCGGTTATTT
66 TGC-TTTTTATTTTTTGACTCGTGGTTTAATTCT-AGTCA-TT
* * * * * * ** * * *
5385902 TTCCTTCTCTGA--CATGTGATTTAGT-TTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCT
1 TTCATTTTCTGACTCAT-AG-TTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATC-
* * * *
5385964 CAGTAG-TTTTTGA-TTTTTGACAT-GTGATTTAATATCGA-TCATT
62 CGGTTGCTTTTT-ATTTTTTGAC-TCGTGGTTTAAT-TCTAGTCATT
* * * * ** * ** *
5386007 TTCATTTCTTTGACTCAT-GATTTAATGGCGGTTGTTTTTCATTTTCTGATTTGTGATTTAATCT
1 TTCATTT-TCTGACTCATAG-TTTAAT-CCTGATCATTTTCATTTTCTGACTCATGGTTTAATC-
* * * ** *
5386071 CGATCG-TTTTCATTTTTTGACTCACGGTTTAATCCT-GATCATT
62 CGGTTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAG-TCATT
* * * * * ** ** * * * **
5386114 TTCATTTTTTGAATCGTGGTTTAAT-CTCGGTTGTTTTTGTTTTCTGTCTCTTGATTTAATTTTG
1 TTCATTTTCTGACTCATAGTTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAA-TCCG
* ** *
5386178 G-T-CATTTTCATTTTTTGACTTATGGTTTAATTCCCA-TCACTT
64 GTTGC-TTTTTATTTTTTGACTCGTGGTTTAATT-CTAGTCA-TT
* ** * * ** *
5386220 TT-GTTCCCTGACTCAT-GATTTAATCCTGGTCATTTTCATTTTTCTGATTGGTGATTTAATCCT
1 TTCATTTTCTGACTCATAG-TTTAATCCTGATCATTTTCA-TTTTCTGACTCATGGTTTAATCC-
* * * * *
5386283 TGTTG-TTTTCATTTTTTGACTCGTGATTTAATTTTGGT--TGT
63 GGTTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAGTCAT-T
* * * * * *
5386324 TTCATTATCTAAGA-TGC--GGTCTAATCCCTCA-CATTTTCATTTTATGACTCGTGGTTT-AT-
1 TTCATTTTCT--GACT-CATAGTTTAAT-CCTGATCATTTTCATTTTCTGACTCATGGTTTAATC
* * * * * * *
5386383 -TGTAAGTCATTTTCATTTTCTGACTCATAGTTTAA-TCTCGATCATT
62 CGGT-TG-C-TTTTTATTTTTTGACTCGTGGTTTAATTCTAG-TCATT
* * * * ** *
5386429 TTCATTTTCTGACCCATGGTTTAATCCTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATCTTG
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCA-TTTTCATTTTCTGACTCATGGTTTAATC-CG
** * *
5386494 GTTG-TTTCCATTTTTTGACTTGTGGTTTAA-TCTGGCTCATT
64 GTTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAG-TCATT
* * ** * * * * *
5386535 TTCATTTTCTGACTCATGGCTTAATCAGGATTATTTTTATTTTTTGGCTCATGGTTTAAT-C-AT
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCGGT
* * * *
5386598 AGTCATTTTTATTTTTTGACTCGTGGTCTAA-TCGAGGTCTTTT
66 TG-C-TTTTTATTTTTTGACTCGTGGTTTAATTCTA-GTC-ATT
* * * * * ** *
5386641 TTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGA-TGGGTAGTTTAATCT
1 TTCATTTTCTGACTCATAGTTTAAT-CCTGATCA-TTTTCATTTTCTGACT-CATGGTTTAATC-
** * * * * *
5386704 CAATCG-TTTTCATTTTTTGACTTGTGGTTTAA-TCTCAGTCGTC
62 CGGTTGCTTTTTATTTTTTGACTCGTGGTTTAATTCT-AGTCATT
* * * * * **
5386747 TTCGATTTT-TGACTCAT-GATTTAGT-CTCGATCTTTTTTATTTTCTAACTCATAGTTTAATAT
1 TTC-ATTTTCTGACTCATAG-TTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * **** * ** **
5386809 GGGT-CATTTTCATTTTTTGACTCACAATTCAAACCCGGTCATT
63 GGTTGC-TTTTTATTTTTTGACTCGTGGTTTAATTCTAGTCATT
* * * * *
5386852 TTCATTTTTTAACTCGT-GATTTAAT-TTCGATCATTTT-TTGTTCTCTGA--CATGTGATTTAG
1 TTCATTTTCTGACTCATAG-TTTAATCCT-GATCATTTTCAT-TT-TCTGACTCATG-G-TTTA-
* * * * * * * *
5386912 TTTCGG-TGGTTTTGATTTTCTGACTCATGATTT-ATTCTCCGT-AGTTT
59 ATCCGGTTGCTTTTTATTTTTTGACTCGTGGTTTAATTCT-AGTCA--TT
* * * *
5386959 TTGATTTT-TGA--CATGTGATTTAAT-ATCGATCATTTTCATTTCTCTGACTCATGATTTAA-C
1 TTCATTTTCTGACTCAT-AG-TTTAATCCT-GATCATTTTCATTT-TCTGACTCATGGTTTAATC
* * * * *
5387019 GATGGTTG-TTTTTCATTTTGTGACTTGTGATTTAA-TCTGGATCATT
62 --CGGTTGCTTTTT-ATTTTTTGACTCGTGGTTTAATTCTAG-TCATT
* * *
5387065 TTCATTTTTTGACTCACAGTTTAATCCTGATCATTTTCATTTTTTGACTCATGGTTTAATCTCGG
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATC-CGG
* * * * *
5387130 TTGCTTTTTTTTTTTTGATTCGTGGTTTAATTTTGGTCGTT
65 TTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAGTCATT
* * * * * * * ** *
5387171 TTCATTTTTTGACTTACAATTTAATTCC-CATCGCTTTT-GTTCCCTGACTCATGATTTAATCC-
1 TTCATTTTCTGACTCATAGTTTAA-TCCTGATC-ATTTTCATTTTCTGACTCATGGTTTAATCCG
* * * * * **
5387233 -TAGTCATTTTCATTTTTTTGATTCGTGATTTAA-TCTTTGTTGTT
64 GTTG-C-TTTTTA-TTTTTTGACTCGTGGTTTAATTC-TAGTCATT
* ** * ** * * ** ** ** *
5387277 TTTATTTTCTGACTCAT-GATTTAATTTTGGTTGTTTTCATTATCTAAAACGCGGCCTAATCC-C
1 TTCATTTTCTGACTCATAG-TTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCGG
* * * *
5387340 TCGCATTTTCATTTTATGACTCATGGTTT-ATTCTCAGTCATT
65 TTGC-TTTTTATTTTTTGACTCGTGGTTTAATTCT-AGTCATT
* * * **
5387382 TTCATTTTCTGACTCATAGTTTAAT-CTCAATCATTTTCATTTTCTAACCCATGGTTTAATCATG
1 TTCATTTTCTGACTCATAGTTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCGG
* * * * * **
5387446 AT-CGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTT
65 TTGC-TTTTT-ATTTTTTGACTCGTGGTTTAATTCTAGTCATT
* * * ** * * * * * *
5387488 TCCATTTTTTTACTTGTGGTTTAAT-CTAGCTCATTTTTATTTTATGACTCATGGCTTAATCAGG
1 TTCATTTTCTGACTCATAGTTTAATCCT-GATCATTTTCATTTTCTGACTCATGGTTTAATCCGG
* * *
5387552 ATT-ATTTTCATTTTTTGACTCATGGTTTAA-TCATAGTCATT
65 -TTGCTTTTTATTTTTTGACTCGTGGTTTAATTC-TAGTCATT
* * * * * * * * * *
5387593 TTCATTTTTTGACTCGTGGTGTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCC-C
1 TTCATTTTCTGACTCATAGTTTAATCCTGAT-CATTTTCATTTTCTGACTCATGGTTTAATCCGG
* * * *
5387657 TAT-CATTTTTCTTTTTTTGA-T-GGGCAGTTTAATTCCAATCATT
65 T-TGC-TTTTT-ATTTTTTGACTCGTG--GTTTAATTCTAGTCATT
* * * * * ** *
5387700 TTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTTTGACTTGTGGTTTAATCTGGG
1 TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATC-CGG
* * * *
5387765 TTG-TTTTCATTTTTTGACTCATGGTTTAATCCTCGT-AGTT
65 TTGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAGTCA-TT
* * * * * *
5387805 TTAATCTTCTGACTCACT-GTTTAATCCCGATCAATTTCACTTTT-TAACTCATGATTTAAT
1 TTCATTTTCTGACTCA-TAGTTTAATCCTGATCATTTTCA-TTTTCTGACTCATGGTTTAAT
5387865 TTCGATCTTT
Statistics
Matches: 1516, Mismatches: 408, Indels: 290
0.68 0.18 0.13
Matches are distributed among these distances:
100 3 0.00
101 1 0.00
102 2 0.00
103 11 0.01
104 70 0.05
105 504 0.33
106 646 0.43
107 255 0.17
108 15 0.01
109 4 0.00
110 5 0.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (105 bp):
TTCATTTTCTGACTCATAGTTTAATCCTGATCATTTTCATTTTCTGACTCATGGTTTAATCCGGT
TGCTTTTTATTTTTTGACTCGTGGTTTAATTCTAGTCATT
Found at i:5387486 original size:176 final size:176
Alignment explanation
Indices: 5387275--5387655 Score: 383
Period size: 176 Copynumber: 2.2 Consensus size: 176
5387265 ATCTTTGTTG
* * * ** *
5387275 TTTTT-ATTTTCTGACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAAACGCGGCCTAATCC
1 TTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTTCCATTATCTAAAACGCGGCCTAATCC
** * *
5387339 CTCGCATTTTCATTTTATGACTCATGGTTTATTCTCA-G-TCATTTTCATTTTCTGACTCATAGT
66 AGCGCATTTTCATTTTATGACTCATGGCTTA--ATCAGGATCATTTTCATTTTCTGACTCATAGT
* *
5387402 TTAATC-TCAATCATTTTCATTTTCTAACCCATGGTTTAATCATGATCG
129 TTAATCAT-AATCATTTTCATTTTCTAACCCATGGTGTAATCATGATCC
* * * * * *** * ** *
5387450 TTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTTACTTGTGGTTTAATCT
1 TTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTTCCATTATCTAAAACGCGGCCTAATCC
* * * * *
5387515 AGCTCATTTTTATTTTATGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGTTT
66 AGCGCATTTTCATTTTATGACTCATGGCTTAATCAGGATCATTTTCATTTTCTGACTCATAGTTT
* * * * * * *
5387580 AATCATAGTCATTTTCATTTTTTGACTCGTGGTGTAATCGTGGTCC
131 AATCATAATCATTTTCATTTTCTAACCCATGGTGTAATCATGATCC
5387626 TTTTTCATTTTTTGACTCGTGGTTTAATCC
1 TTTTTCATTTTTTGACTCGTGGTTTAATCC
5387656 CTATCATTTT
Statistics
Matches: 164, Mismatches: 38, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
174 3 0.02
175 6 0.04
176 154 0.94
177 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (176 bp):
TTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTTCCATTATCTAAAACGCGGCCTAATCC
AGCGCATTTTCATTTTATGACTCATGGCTTAATCAGGATCATTTTCATTTTCTGACTCATAGTTT
AATCATAATCATTTTCATTTTCTAACCCATGGTGTAATCATGATCC
Found at i:5387881 original size:212 final size:210
Alignment explanation
Indices: 5387344--5387877 Score: 506
Period size: 212 Copynumber: 2.5 Consensus size: 210
5387334 AATCCCTCGC
* *
5387344 ATTTTCATTTTATGACTCATGGTTT-ATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCCTC-GTCATTTTCATTTTCTGACTCATAGTTTAATC
* * * *
5387408 TCAATCATTTTCATTTTCTAACCCATGGTTTAATCAT-GATCGTTTTTCTTTTTTTGACTGGTGG
65 CCGATCATTTTCATTTT-TAACTCATGGTTTAAT-ATCGATCATTTTTCTTTTTTTGACTGGTGG
** ** * * * * *
5387472 TTTAATCCTGGTTGTTTCCATTTTTTTACTTGTGGTTTAATCTAGCTCATTTTTATTTTATGACT
128 TTTAATCCTAATCATTTCCATTTTCTGACTTATGGTTTAATCTAGATCATTTTCATTTTATGACT
5387537 CATGGCTTAATCAGGATT
193 CATGGCTTAATCAGGATT
* * * * * * *
5387555 ATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTGTAATCG
1 ATTTTCATTTTTTGACTCATGGTTTAATCCTCGTCATTTTCATTTTCTGACTCATAGTTTAATCC
* * * * * ** *
5387620 TGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA-TGG-GCA
66 CGAT-CATTTTCA-TTTTTAACTCATGGTTTAATATCGATCATTTTTCTTTTTTTGACTGGTG--
* * * *
5387683 GTTTAATTCC-AATCATTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTTTGA
127 GTTTAA-TCCTAATCATTTCCATTTTCTGACTTATGGTTTAATCTAGATCATTTTCATTTTATGA
** * * *
5387747 CTTGTGGTTTAATCTGGGTT
191 CTCATGGCTTAATCAGGATT
* * *
5387767 GTTTTCATTTTTTGACTCATGGTTTAATCCTCGT-AGTTTTAATCTTCTGACTCACT-GTTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAATCCTCGTCA-TTTTCATTTTCTGACTCA-TAGTTTAAT
* * * *
5387830 CCCGATCAATTTCACTTTTTAACTCATGATTTAATTTCGATCTTTTTT
64 CCCGATCATTTTCA-TTTTTAACTCATGGTTTAATATCGATCATTTTT
5387878 TCTTCTCTGA
Statistics
Matches: 255, Mismatches: 59, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
210 1 0.00
211 89 0.35
212 157 0.62
213 8 0.03
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (210 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCCTCGTCATTTTCATTTTCTGACTCATAGTTTAATCC
CGATCATTTTCATTTTTAACTCATGGTTTAATATCGATCATTTTTCTTTTTTTGACTGGTGGTTT
AATCCTAATCATTTCCATTTTCTGACTTATGGTTTAATCTAGATCATTTTCATTTTATGACTCAT
GGCTTAATCAGGATT
Found at i:5388607 original size:987 final size:987
Alignment explanation
Indices: 5385720--5390164 Score: 4772
Period size: 987 Copynumber: 4.5 Consensus size: 987
5385710 TTTAATCCTG
* * * *
5385720 ATCGTTTTCATTTTTTGACTCATGGTTTAATCTTGGTCGTTTTCATTTTCTGACTCACGATTTAA
1 ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTCTGACTCATGATTTAA
* * * * * *
5385785 TCTCGATCTTTTTTATTTTCTAACTCATAGTGTAATAC-AGATCATTTTCATTTTTTGACTCACA
66 TCTCGATCTTTTTCATTTTCTAACTCATAGTTTAATCCTCG-TCATTTTCATCTTCTGACTCACA
* *
5385849 GTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGGT-TATTTTTCCTTCTCTG
130 GTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCT-TTTTTTCTTCTCTG
5385913 ACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGAT
194 ACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGAT
* * *
5385978 TTTTGACATGTGATTTAATATCGATCATTTTCATTTCTTTGACTCATGATTTAATGGCGGTTGTT
259 TTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACTGTTGTT
*
5386043 TTTCATTTTCTGATTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTG
324 TTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTG
* * * * * *
5386108 ATCATTTTCATTTTTTGAATCGTGGTTTAATCTCGGTTGTTTTTGTTTTCTGTCTCTTGATTTAA
389 ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTTCTTTTTTGACTCATGATTTAA
*
5386173 TTTTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCACTTTTGTTCCCTGACTCATGA
454 TTTTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCGCTTTTGTTCCCTGACTCATGA
* * *
5386238 TTTAATCCTGGTCATTTTCATTTTTCTGATTGGTGATTTAATCCTTGTTGTTTTCATTTTTTGAC
519 TTTAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTGTTGTTTTTATTTTCTGAC
* *
5386303 TCGTGATTTAATTTTGGTTG-TTTCATTATCTAAGATGCGGTCTAATCCCTCACATTTTCATTTT
584 TCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGCGGTCTAATCCCTCGCATTTTCATTTT
* *
5386367 ATGACTCGTGGTTTATTGTAAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTC
649 ATGACTCGTGGTTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTC
* *
5386432 ATTTTCTGACCCATGGTTTAATCCTGATCATTTTTCTTTTTTTGACTGGTGGTTTAATCTTGGTT
714 ATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTT
5386497 GTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCA
779 GTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCA
* * *
5386562 GGATTATTTTTATTTTTTGGCTCATGGTTTAATCATAGTCATTTTTATTTTTTGACTCGTGGTCT
844 GGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCT
* *
5386627 AATCGAGGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATGG
909 AATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATGG
5386692 GTAGTTTAA-TCTCA
974 GTAGTTTAATTC-CA
* * * *
5386706 ATCGTTTTCATTTTTTGACTTGTGGTTTAATC-TCAGTCGTCTTCGATTTT-TGACTCATGATTT
1 ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGA-TCGTTTTC-ATTTTCTGACTCATGATTT
* * * * * *
5386769 AGTCTCGATCTTTTTTATTTTCTAACTCATAGTTTAAT-ATGGGTCATTTTCATTTTTTGACTCA
64 AATCTCGATCTTTTTCATTTTCTAACTCATAGTTTAATCCT-CGTCATTTTCATCTTCTGACTCA
* * * * * *
5386833 CAATTCAAACCCGGTCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCATTTTTTGTTCTCT
128 CAGTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCTTTTTTTCTTCTCT
*
5386898 GACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCCGTAGTTTTTGA
193 GACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGA
*
5386963 TTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAACGA-TGGTTG
258 TTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACT-GTTG
* * * *
5387027 TTTTTCATTTTGTGACTTGTGATTTAATCTGGATCATTTTCATTTTTTGACTCACAGTTTAATCC
322 TTTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCC
* * * * * *
5387092 TGATCATTTTCATTTTTTGACTCATGGTTTAATCTCGGTTGCTTTTTTTTTTTTGATTCGTGGTT
387 TGATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTT-ATTTTTCTTTTTTGACTCATGATT
* ***
5387157 TAATTTTGGTCGTTTTCATTTTTTGACTTACAATTTAATTCCCATCGCTTTTGTTCCCTGACTCA
451 TAATTTTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCGCTTTTGTTCCCTGACTCA
* * *
5387222 TGATTTAATCCTAGTCATTTTCATTTTTTTGATTCGTGATTTAATCTTTGTTGTTTTTATTTTCT
516 TGATTTAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTGTTGTTTTTATTTTCT
* * *
5387287 GACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAAACGCGGCCTAATCCCTCGCATTTTCAT
581 GACTCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGCGGTCTAATCCCTCGCATTTTCAT
* *
5387352 TTTATGACTCATGGTTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCAATCATT
646 TTTATGACTCGTGGTTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATT
* *
5387417 TTCATTTTCTAACCCATGGTTTAATCATGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTG
711 TTCATTTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTG
* * * *
5387482 GTTGTTTCCATTTTTTTACTTGTGGTTTAATCTAGCTCATTTTTATTTTATGACTCATGGCTTAA
776 GTTGTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAA
5387547 TCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGG
841 TCAGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGG
*
5387612 TGTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA
906 TCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGA
*
5387677 TGGGCAGTTTAATTCCA
971 TGGGTAGTTTAATTCCA
* * ** *
5387694 ATCATTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTTTGACTTGTGGTTTAA
1 ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTCTGACTCATGATTTAA
* * * * * *
5387759 TCTGGGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCTCGT-AGTTTTAATCTTCTGACTCAC
66 TCTCGATCT-TTTTCATTTTCTAACTCATAGTTTAATCCTCGTCA-TTTTCATCTTCTGACTCAC
* * * *
5387822 TGTTTAATCCCGATCAATTTCACTTTTTAACTCATGATTTAATTTCGATCTTTTTTTCTTCTCTG
129 AGTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCTTTTTTTCTTCTCTG
* * * *
5387887 ACATGTGATTTAGTTTCAGTGGTTTTGATTTTTTGACTCATGATTTATTCTCAATAGTTTTCGAT
194 ACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGAT
5387952 TTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACTGTTGTT
259 TTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACTGTTGTT
* * *
5388017 TTTCATTTTCTAACTTGTGATTTAATTTCGATTGTTTTCATTTTTTGACTCACGGTTTAATCCTG
324 TTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTG
5388082 ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTTCTTTTTTGACTCATGATTTAA
389 ATCATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTTCTTTTTTGACTCATGATTTAA
5388147 TTTTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCGCTTTTGTTCCCTGACTCATGA
454 TTTTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCGCTTTTGTTCCCTGACTCATGA
* *
5388212 TTTAATCCTGGTCATTTTCATTTTTCTGATTCATGATTTAATCCTTGTTGTTTTTATTTTCTAAC
519 TTTAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTGTTGTTTTTATTTTCTGAC
* * * **
5388277 TTGTGATTTAATTTTGCTTGTTTTCATTATCCAAGACGCGGTCTAATATCTCGCATTTTCATTTT
584 TCGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGCGGTCTAATCCCTCGCATTTTCATTTT
*
5388342 ATGACTCGTGATTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTC
649 ATGACTCGTGGTTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTC
* *
5388407 ATTTTCTGATCCATAGTTTAATCCTGATTCGTTTTTC-TTTTTTGACTGGTGGTTTAATCCTGGT
714 ATTTTCTGACCCATGGTTTAATCCTGA-TCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGT
* * * *
5388471 TGTTTCTACTTTTTGACTTATGGTGTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATC
778 TGTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATC
*
5388536 AGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCGTTTTCATTTTTTGACTCGTGGTC
843 AGGATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTC
* * * *
5388601 TAATCGTGGTCCTTTTTCTTTTTTTTACTTGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATA
908 TAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATG
*
5388666 GGTAGTTTAATCCCA
973 GGTAGTTTAATTCCA
* * ** *
5388681 ATCGTTTTCATTTTCTGACTTATAGTTTAATCCTGATCGTTTTCATTTTCTGACTTGTGGTTTAA
1 ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTCTGACTCATGATTTAA
* * * * * * *** **
5388746 TCTGGGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGCTTTCATCTTCTGACTCATG
66 TCTCGATCT-TTTTCATTTTCTAACTCATAGTTTAATCCTCGTCATTTTCATCTTCTGACTCACA
* * * *
5388810 GTTTAATCGCGATCATTTTCAGTTTTTTGACTTGCTG-TTTAATCTT-AATCGTTCTTCATTT-T
130 GTTTAATCCCGATCATTTTCA-TTTTTTAACTCG-TGATTTAAT-TTCGATC-TT-TT--TTTCT
* * * * * ** * * * ** * *
5388872 T-T-TGACTTATGTTTTCA-TTACGATCATTTTCATTTTTTGACTCGTGATTTAAAC-CCGATCG
188 TCTCTGACATGTGATTT-AGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAG-TAG
** * ** * * * *
5388933 -CATTCATTTTTTGACTCATG-G-TTTAATCCCAATCATTTTTCTTTTTCATTTTTTTATCATTC
251 TTTTTGA-TTTTTGA--CATGTGATTTAATATCGATCA-TTTTC-ATTTC----TCTGA-C--TC
* * * ** * *
5388995 TTAT-TTTCTAACTCGTAGCTTAATTCCAGTCATTTTCATTTCCTGACTCATGGTTTAATCT-TA
304 --ATGATT-TAA-T-G-A-C-T-GTT---GT--TTTTCATTTTCTGACTTGTGATTTAATCTCGA
** * *** * * *
5389058 TTCAATTT--TTTTCTGACTGGTGGTTTAATCCCGATCATTTCCATTTTTTGACTCATGGTTTAA
355 -TCGTTTTCATTTTTTGACTCACGGTTTAATCCTGATCATTTTCATTTTTTGACTCGTGGTTTAA
** ** * * * * * * * * *
5389121 TCTTAG-TCGTTTCCATTTTTCGGCTCGTGCTTTAATCTAGGTCATTTTCTTTTTTTGACTCAAT
419 TCTCGGTTATTTTTC-TTTTTTGACTCATGATTTAATTTTGGTCATTTTCATTTTTTGACT-TAT
* ** * **
5389185 -GTTTAA-TCCCACTTG-TTTTCGTTTTCTGACTCGATGGA-TTAATCCAGGTTGTCTTTCATTT
482 GGTTTAATTCCCA-TCGCTTTT-GTTCCCTGACTC-AT-GATTTAATCCTGGTCAT-TTTCATTT
* * ** ** ** * * ** * *
5389246 TT-TAACTCGT-ACTTTAATCCCAG-TCATTTTCGTTTCTTGACTCATGATTCAA-ACTGGTCGC
542 TTCTGATTCGTGA-TTTAATCCTTGTTGTTTTTATTTTC-TGACTCGTGATTTAATTTTGGTTGT
* * ** ** * * * ** *
5389307 ATTCATTTTCTAACTCATGGTTTAGT-CC-CG-A---TCATTTT-T---T-TTCATTT-TTC-GA
605 TTTCATTATCTAAGACGCGGTCTAATCCCTCGCATTTTCATTTTATGACTCGTGGTTTATTCTCA
* * * * * * * *
5389359 -TCGTTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTCGTTTTTTGACTCAAT-GTTTA
670 GTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGAC-CCATGGTTTA
* * * * ** * *
5389422 AT-CTCGGTCGTTTTCCTTTTTCT-AGCTAGTGGTTTAAT-CTCGGTCATTTTCATTTTTTAACT
734 ATCCT-GATCGTTTTTCTTTTTTTGA-CTGGTGGTTTAATCCT-GGTTGTTTCCATTTTTTGACT
* ** * * ** *
5389484 CGTGGTTTAATCCT-TATCGTTTTCATTTTTTGACT-AGTGATTTAATCCTAGTCATT-TTTT-A
796 TGTGGTTTAAT-CTGGCTCATTTTCATTTTCTGACTCA-TGGCTTAAT-C-AG-GATTATTTTCA
* * * * * * * * * ** *
5389545 -TTTCTAACTCGTGATTTAATC-TCAGTCATTGTCATTTATTGACTCATGATTTAATCCCGAT--
856 TTTTTTGACTCATGGTTTAATCAT-AGTCATTTTCATTTTTTGACTCGTGGTCTAATCGTGGTCC
** * ** * * * * * * *
5389606 TGTTTTCATTTCCTAACTCACGATTTAA--ACT-TGATTGTATTCATTTTTTAACT-CGTGGTTT
920 T-TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATT-T-TTCTTTTTTTGA-TGGGTAGTTT
*
5389667 AA-TCCTG
981 AATTCC-A
** * * * * * *
5389674 GCCATTTTCATTTTTTGACTCATGGTTTAATC-TCAGTAGTTTTCGGTTTT-TGACTCATGATTT
1 ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGA-TCGTTTTC-ATTTTCTGACTCATGATTT
* * * * * *
5389737 AGTCTCGATCTTTTTTATTTTCTAACTCATAGTTTAAT-ATGGGTCATTTTCATTTTTTGACTCA
64 AATCTCGATCTTTTTCATTTTCTAACTCATAGTTTAATCCT-CGTCATTTTCATCTTCTGACTCA
* * * *
5389801 CAATTTAATCCCGGTCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCATTTTTTGTTCTCT
128 CAGTTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCTTTTTTTCTTCTCT
*
5389866 GACATGTGATTTAGTTTCGATGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGA
193 GACATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGA
* *
5389931 TTTTTAACATGTGATTTAATATTGATCATTTTCATTTCTCTGACTCATGATTTAATGA-TGGTTG
258 TTTTTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACT-GTTG
* * **
5389995 CTTTTCATTTTTTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCGTGGTTTAAT-C
322 TTTTTCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCC
* ** ** * * * * *
5390059 TCGGTTGTTTTTGTTTTTTGACTCATGATTTAATC-CTGGTCA-TTTTCATTTTTTTGATTCGTG
387 T-GATCATTTTCATTTTTTGACTCGTGGTTTAATCTC-GGTTATTTTTC--TTTTTTGACTCATG
* * * *
5390122 ATTTAATCCTT-GTTATTTTCATTTTTTGACTCATGATTTAATT
448 ATTTAAT-TTTGGTCATTTTCATTTTTTGACTTATGGTTTAATT
5390165 TTGGTTGTTT
Statistics
Matches: 2929, Mismatches: 427, Indels: 219
0.82 0.12 0.06
Matches are distributed among these distances:
969 29 0.01
970 2 0.00
971 53 0.02
972 40 0.01
973 3 0.00
974 3 0.00
977 1 0.00
978 1 0.00
979 1 0.00
980 5 0.00
981 2 0.00
982 2 0.00
984 1 0.00
985 4 0.00
986 383 0.13
987 814 0.28
988 754 0.26
989 80 0.03
990 20 0.01
991 76 0.03
992 34 0.01
993 126 0.04
994 39 0.01
995 166 0.06
996 9 0.00
997 9 0.00
998 10 0.00
999 3 0.00
1000 5 0.00
1001 1 0.00
1002 2 0.00
1003 8 0.00
1004 1 0.00
1005 1 0.00
1006 3 0.00
1007 2 0.00
1008 15 0.01
1009 141 0.05
1010 41 0.01
1011 39 0.01
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (987 bp):
ATCGTTTTCATTTTCTGACTTATGGTTTAATCTTGATCGTTTTCATTTTCTGACTCATGATTTAA
TCTCGATCTTTTTCATTTTCTAACTCATAGTTTAATCCTCGTCATTTTCATCTTCTGACTCACAG
TTTAATCCCGATCATTTTCATTTTTTAACTCGTGATTTAATTTCGATCTTTTTTTCTTCTCTGAC
ATGTGATTTAGTTTCGGTGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTGATTT
TTGACATGTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACTGTTGTTTT
TCATTTTCTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCACGGTTTAATCCTGAT
CATTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTATTTTTCTTTTTTGACTCATGATTTAATT
TTGGTCATTTTCATTTTTTGACTTATGGTTTAATTCCCATCGCTTTTGTTCCCTGACTCATGATT
TAATCCTGGTCATTTTCATTTTTCTGATTCGTGATTTAATCCTTGTTGTTTTTATTTTCTGACTC
GTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGCGGTCTAATCCCTCGCATTTTCATTTTAT
GACTCGTGGTTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCAT
TTTCTGACCCATGGTTTAATCCTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGT
TTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGG
ATTATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTCTAA
TCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGATGGGT
AGTTTAATTCCA
Found at i:5388852 original size:212 final size:213
Alignment explanation
Indices: 5388331--5388853 Score: 519
Period size: 212 Copynumber: 2.5 Consensus size: 213
5388321 AATATCTCGC
* * * * * ** * *
5388331 ATTTTCATTTTATGACTCGTGATTTATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCGCTTTCATTTTCTGACTCATGGTTTAATCG
* * * *
5388396 CGATCATTTTCATTTTCTGA--TCCATAGTTTAAT-CCTGATTCGTTTTTCTTTTTTGACTGGTG
66 CGATCATTTTCATTTTTTGACTTGC-TAGTTTAATCCCTGATTCATTTTTCTTTTTTGACTGGTA
*** * * *
5388458 GTTTAATCCTGGTTGTTTCTACTTTTTGACTTATGGTGTAATCTGGCTCATTTTCATTTTCTGAC
130 GTTTAATCCCAATCGTTTCTACTTTTTGACTTATAGTGTAATCTGGATCATTTTCATTTTCTGAC
5388523 TCATGGCTTAATCAGGATT
195 TCATGGCTTAATCAGGATT
* * * * *
5388542 ATTTTCATTTTTTGACTCATGGTTTAATCATAGTCGTTTTCATTTTTTGACTCGTGGTCTAATCG
1 ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCGCTTTCATTTTCTGACTCATGGTTTAATCG
* * * * * *
5388607 TGGTCCTTTTTCTTTTTTTTACTTG-TGGTTTAATCCCT-A-TCATTTTTCTTTTTTTGA-TAGG
66 CGAT-CATTTTCATTTTTTGACTTGCTAGTTTAATCCCTGATTCATTTTTC-TTTTTTGACT-GG
* *
5388668 TAGTTTAATCCCAATCGTTT-T-CATTTTCTGACTTATAGTTTAATCCT-GATCGTTTTCATTTT
128 TAGTTTAATCCCAATCGTTTCTAC-TTTT-TGACTTATAGTGTAAT-CTGGATCATTTTCATTTT
** * * *
5388730 CTGACTTGTGGTTTAATCTGGGTT
190 CTGACTCATGGCTTAATCAGGATT
* * * * *
5388754 GTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGCTTTCATCTTCTGACTCATGGTTTAATCG
1 ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCGCTTTCATTTTCTGACTCATGGTTTAATCG
5388819 CGATCATTTTCAGTTTTTTGACTTGCT-GTTTAATC
66 CGATCATTTTCA-TTTTTTGACTTGCTAGTTTAATC
5388854 TTAATCGTTC
Statistics
Matches: 251, Mismatches: 50, Indels: 21
0.78 0.16 0.07
Matches are distributed among these distances:
210 1 0.00
211 75 0.30
212 168 0.67
213 6 0.02
214 1 0.00
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (213 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCACAGTCGCTTTCATTTTCTGACTCATGGTTTAATCG
CGATCATTTTCATTTTTTGACTTGCTAGTTTAATCCCTGATTCATTTTTCTTTTTTGACTGGTAG
TTTAATCCCAATCGTTTCTACTTTTTGACTTATAGTGTAATCTGGATCATTTTCATTTTCTGACT
CATGGCTTAATCAGGATT
Found at i:5390040 original size:142 final size:141
Alignment explanation
Indices: 5389865--5390163 Score: 330
Period size: 142 Copynumber: 2.1 Consensus size: 141
5389855 TTTTGTTCTC
* * * * * *
5389865 TGACATGTGATTTAGTTTCGATGGTTTTGATTTTCTGACTCATGATTTATTCTCAGTAGTTTTTG
1 TGACTTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGATTTAATCTCAGTAGTTTTTG
* * *
5389930 ATTTTTAACAT-GTGATTTAATATTGATCATTTTCATTTCTCTGACTCATGATTTAATGATGGTT
66 ATTTTTAAC-TCATGATTTAATACTGATCATTTTCATTTCTCTGACTCATGATTTAATCATGGTT
*
5389994 GCTTTTCATTTTT
130 -ATTTTCATTTTT
* * * * *
5390007 TGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCGTGGTTTAATCTCGGTTGTTTTTG
1 TGACTTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGATTTAATCTCAGTAGTTTTTG
* * * * * * * * * *
5390072 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTGATTTAATCCTTGTTA
66 ATTTTTAACTCATGATTTAATACTGATCATTTTCATTTCTCTGACTCATGATTTAATCATGGTTA
5390137 TTTTCATTTTT
131 TTTTCATTTTT
**
5390148 TGACTCATGATTTAAT
1 TGACTTGTGATTTAAT
5390164 TTTGGTTGTT
Statistics
Matches: 129, Mismatches: 27, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
141 26 0.20
142 103 0.80
ACGTcount: A:0.19, C:0.12, G:0.15, T:0.54
Consensus pattern (141 bp):
TGACTTGTGATTTAATCTCGATCGTTTTCATTTTCTGACTCATGATTTAATCTCAGTAGTTTTTG
ATTTTTAACTCATGATTTAATACTGATCATTTTCATTTCTCTGACTCATGATTTAATCATGGTTA
TTTTCATTTTT
Found at i:5390340 original size:141 final size:140
Alignment explanation
Indices: 5390207--5390656 Score: 415
Period size: 141 Copynumber: 3.2 Consensus size: 140
5390197 ATCCCTCGTA
* * **
5390207 TTTTCATTTTATGACTCGTGGTTTACTCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCAA
* * * * * * *
5390272 GATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCATTTTTCTTTTTTTCACTGGTGCTTT
66 AATCATTTTCATTTTCTGACTCATGGTTTAATCATGATCATTTTTCATTTTTTAACTCGTGGTTT
5390337 AATCCTAGCTT
131 AATCCTAG-TT
* * *** * * * *
5390348 TTTTCATTTTTTGACTTGTAGTTTAATCTGGCTCATTTTCATTTTCTGACTTATGGCTTAGTCAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCAA
* * * *
5390413 CATTATTTTCATTTTTTGACTCATGGTTTAATCAT-AGTCA-TTTTCATTTTTTAACTCGTGGTC
66 AATCATTTTCATTTTCTGACTCATGGTTTAATCATGA-TCATTTTTCATTTTTTAACTCGTGGTT
* *
5390476 TAATCGTGGTCCT
130 TAATCCTAGT--T
* * * ** *
5390489 TTTTCATTTTTTGACTCGTGGTTTAATC-CATATCATTTTCTTTTTTTGATTGGTAGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCA-ATCATTTTCATTTTCTGACTCATAGTTTAATCA
* * ** * * *
5390553 CAATCGTTTTCATTTTCTGACTTGTGGTTTAATCATGGTC-TTTTTCATTTTTTGACTTGTGGTT
65 AAATCATTTTCATTTTCTGACTCATGGTTTAATCATGATCATTTTTCATTTTTTAACTCGTGGTT
* *
5390617 TAAT-ATGGGTT
130 TAATCCT-AGTT
* *
5390628 GTTTTCATTTTTTGACTCATGCTTTAATC
1 -TTTTCATTTTTTGACTCGTGGTTTAATC
5390657 CCTGTCGTTT
Statistics
Matches: 248, Mismatches: 53, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
139 2 0.01
140 53 0.21
141 193 0.78
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.52
Consensus pattern (140 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCAA
AATCATTTTCATTTTCTGACTCATGGTTTAATCATGATCATTTTTCATTTTTTAACTCGTGGTTT
AATCCTAGTT
Found at i:5390389 original size:211 final size:210
Alignment explanation
Indices: 5389996--5390390 Score: 465
Period size: 211 Copynumber: 1.9 Consensus size: 210
5389986 TGATGGTTGC
* * * * * * *
5389996 TTTTCATTTTTTGACTTGTGATTTAATCTCGATCGTTTTCATTTTTTGACTCGTGGTTTAATCTC
1 TTTTCATTTTATGACTCGTGATTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCTC
* ** ** * * * * *
5390061 GGTTGTTTTTGTTTTTTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTGATTT
66 GATCATTTTCATTTTCTGACCCATGATTTAATCCTGATCATTTTCATTTTTTTCACTCGTGATTT
* * **
5390126 AATCCTTGTTATTTTCATTTTTTGACTCATGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC
131 AATCCTAGTTATTTTCATTTTTTGACT-ATGATTTAATTCTGGTCATTTTCATTATCTAAGACGC
5390191 GATCTAATCCCTCGTA
195 GATCTAATCCCTCGTA
* * *
5390207 TTTTCATTTTATGACTCGTGGTTTACTCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCTT
1 TTTTCATTTTATGACTCGTGATTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCTC
* * *
5390272 GATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCATTTTTC-TTTTTTTCACTGGTGCTT
66 GATCATTTTCATTTTCTGACCCATGATTTAATCCTGATCA-TTTTCATTTTTTTCACTCGTGATT
5390336 TAATCCTAGCTT-TTTTCATTTTTTGACT-TGTAGTTTAA-TCTGGCTCATTTTCATT
130 TAATCCTAG-TTATTTTCATTTTTTGACTATG-A-TTTAATTCTGG-TCATTTTCATT
5390391 TTCTGACTTA
Statistics
Matches: 152, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
209 2 0.01
210 5 0.03
211 138 0.91
212 7 0.05
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (210 bp):
TTTTCATTTTATGACTCGTGATTTAATCTCAATCATTTTCATTTTCTGACTCATAGTTTAATCTC
GATCATTTTCATTTTCTGACCCATGATTTAATCCTGATCATTTTCATTTTTTTCACTCGTGATTT
AATCCTAGTTATTTTCATTTTTTGACTATGATTTAATTCTGGTCATTTTCATTATCTAAGACGCG
ATCTAATCCCTCGTA
Found at i:5390600 original size:176 final size:176
Alignment explanation
Indices: 5390206--5390620 Score: 428
Period size: 176 Copynumber: 2.4 Consensus size: 176
5390196 AATCCCTCGT
* * * * * *
5390206 ATTTTCATTTTATGACTCGTGGTTTACTC-TCAATCATTTTCATTTTCTGACTCATAGTTTAATC
1 ATTTTCATTTTCTGACTTGTGGTTTAATCAT-AATCTTTTTCATTTTTTGACTCATGGTTTAATC
* * * * *
5390270 TTGATCATTTTCATTTTCTGACCCATGGTTTAATCCTGATCATTTTTCTTTTTTTCACTGGTGCT
65 TAGATCATTTTCATTTTCTAACCCATGGTCTAATCCTGATCATTTTTCATTTTTTCACTCGTGCT
* ****
5390335 TTAATCCTAGCTTTTTTCATTTTTTGACTTGTAGTTTAATCTGGCTC
130 TTAATCCTAGCTATTTTCATTTTTTGACTTGTAGTTTAATCCCAATC
* * *
5390382 ATTTTCATTTTCTGACTTATGGCTTAGTCA-ACAT-TATTTTCATTTTTTGACTCATGGTTTAAT
1 ATTTTCATTTTCTGACTTGTGGTTTAATCATA-ATCT-TTTTCATTTTTTGACTCATGGTTTAAT
* * * * * * *
5390445 CATAG-TCATTTTCATTTTTTAACTCGTGGTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTG
64 C-TAGATCATTTTCATTTTCTAACCCATGGTCTAATCCTGATCATTTTTCATTTTTTCACTCGTG
* * *
5390509 GTTTAATCCATATC-ATTTTCTTTTTTTGA-TTGGTAGTTTAATCCCAATC
128 CTTTAATCC-TAGCTATTTTCATTTTTTGACTT-GTAGTTTAATCCCAATC
* ** **
5390558 GTTTTCATTTTCTGACTTGTGGTTTAATCATGGTCTTTTTCATTTTTTGACTTGTGGTTTAAT
1 ATTTTCATTTTCTGACTTGTGGTTTAATCATAATCTTTTTCATTTTTTGACTCATGGTTTAAT
5390621 ATGGGTTGTT
Statistics
Matches: 195, Mismatches: 36, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
175 3 0.02
176 186 0.95
177 6 0.03
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (176 bp):
ATTTTCATTTTCTGACTTGTGGTTTAATCATAATCTTTTTCATTTTTTGACTCATGGTTTAATCT
AGATCATTTTCATTTTCTAACCCATGGTCTAATCCTGATCATTTTTCATTTTTTCACTCGTGCTT
TAATCCTAGCTATTTTCATTTTTTGACTTGTAGTTTAATCCCAATC
Found at i:5391966 original size:69 final size:68
Alignment explanation
Indices: 5391847--5392021 Score: 158
Period size: 69 Copynumber: 2.5 Consensus size: 68
5391837 TCATTTTTCA
* ** * * *
5391847 TTTTGACTAGTGATTTAATCCTGGTCATT-TTTT-ATTTCTAACTCGTGATTTAATCTCAGTCGT
1 TTTTGACCA-TGATTTAATCCT-G--ATTGTTTTCATTTCTAACTCACGATTTAAACCCAATCGT
5391910 -TGTCATT
62 AT-TCATT
*
5391917 TTTTGACCATGATTTAATCCTGATTGTTTTCATTTCCTAACTCACGATTTAAACCCAATTGTATT
1 TTTTGACCATGATTTAATCCTGATTGTTTTCATTT-CTAACTCACGATTTAAACCCAATCGTATT
5391982 CATT
65 CATT
* * * * *
5391986 TTTTGACTCGTGGTTTAATTCTGGTCGTTTTCATTT
1 TTTTGAC-CATGATTTAATCCTGATTGTTTTCATTT
5392022 TTGACTTATG
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
66 3 0.03
67 4 0.05
68 5 0.06
69 44 0.50
70 32 0.36
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (68 bp):
TTTTGACCATGATTTAATCCTGATTGTTTTCATTTCTAACTCACGATTTAAACCCAATCGTATTC
ATT
Found at i:5393225 original size:106 final size:106
Alignment explanation
Indices: 5393040--5393526 Score: 282
Period size: 106 Copynumber: 4.6 Consensus size: 106
5393030 ATCCCTCGCA
* * * ** * * ** * *
5393040 TTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCATTTTCATTTTCTGACTCATAGTTTAACCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCT-GGTTGTTTTAATTTTTTGACTTGTGGTTTAATCT
* *
5393104 TGATCATTTTCATTTTTTGATCCATGATTTAATCCCGATCGT
65 AGACCATTTTCATTTTTTGATCCATGATTTAATCCCGATCGT
* * *
5393146 TTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCT-AGTTTTTGACTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTT-TAATTTTTTGACTTGTGGTTTAATCT
* * **
5393210 AGACCATTTTCATTTTCTGA-CTCATGACTTAATCAGGAT--T
65 AGACCATTTTCATTTTTTGATC-CATGATTTAATCCCGATCGT
* * * *
5393250 ATTTTCATTTTTTGACTCATGGCTTAATCATAGTAT-TTTTAATTTTTTGACTTGTGGTTTAATC
1 -TTTTCATTTTTTGACTCGTGGTTTAATCCTGGT-TGTTTTAATTTTTTGACTTGTGGTTTAATC
*** * * *** *
5393314 CCTATCATTTTTCTTTTTTTGATGGGT-ACTTTAATCCCAATCG-
64 TAGACCA-TTTTCATTTTTTGATCCATGA-TTTAATCCCGATCGT
* * * * * * * * *
5393357 TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCGTTTTCATTTTTTGATTTGTGGTTTAATCTG
1 TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTTTAATTTTTTGACTTGTGGTTTAATCTA
* ** *
5393422 GGCTGTTCTCATTTTTTGA-CTCATTG-TTTAATCCCCG-TCG-
66 GACCATTTTCATTTTTTGATC-CA-TGATTTAAT-CCCGATCGT
* * ** ** *
5393462 TTTTCATCTTCTGACTCACGGTTTAATCGC-GGTCAT-TTTTGTTTTTTTGACTTGCGGTTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATC-CTGGT--TGTTTTAATTTTTTGACTTGTGGTTTAAT
5393525 CT
63 CT
5393527 CGGTCGTTCT
Statistics
Matches: 287, Mismatches: 75, Indels: 38
0.72 0.19 0.09
Matches are distributed among these distances:
104 2 0.01
105 103 0.36
106 177 0.62
107 5 0.02
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (106 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTGTTTTAATTTTTTGACTTGTGGTTTAATCTA
GACCATTTTCATTTTTTGATCCATGATTTAATCCCGATCGT
Found at i:5393594 original size:142 final size:141
Alignment explanation
Indices: 5393343--5393650 Score: 318
Period size: 142 Copynumber: 2.2 Consensus size: 141
5393333 TGATGGGTAC
* * * *
5393343 TTTAATCCCAATC-GTTTTCATTTTCTGACTTGTAGTTTAATCCCGATCGTTTTCATTTTTTGAT
1 TTTAATCCCAATCATTTTTCTTTTTCTGACTTGCAGTTTAATCCCGATCGTTTTCATTTTTTGAC
*** * * * **
5393407 TTGTGGTTTAATCTGGGCTGTTCTCATTTTTTGACTCATTGTTTAATCCCCG-TCGTTTTCATCT
66 TTGTGGTTTAATCCAAGCTGTTCTCATTTCTTGACTCAGTGTTTAA-ACCCGATCGCATTCATCT
*
5393471 TCTGACTCACGG
130 TCTGACTAACGG
* ** * * * * *
5393483 TTTAATCGCGGTCATTTTTGTTTTTTTGACTTGCGGTTTAATCTCGGTCGTTCTTCATTTTTTGA
1 TTTAATCCCAATCATTTTTCTTTTTCTGACTTGCAGTTTAATCCCGATCGTT-TTCATTTTTTGA
* * *
5393548 CTTGTGTTTTAATCACAATC-GTTTTCATTTCTTGACT-AGTGATTTAAACCCGATCGCATTCAT
65 CTTGTGGTTTAATC-CAAGCTGTTCTCATTTCTTGACTCAGTG-TTTAAACCCGATCGCATTCAT
* *
5393611 TTTCTGACTAATGG
128 CTTCTGACTAACGG
5393625 TTTAATCCCAATCATTTTTCTTTTTC
1 TTTAATCCCAATCATTTTTCTTTTTC
5393651 ATTTTTTTAT
Statistics
Matches: 132, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
140 10 0.08
141 37 0.28
142 84 0.64
143 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (141 bp):
TTTAATCCCAATCATTTTTCTTTTTCTGACTTGCAGTTTAATCCCGATCGTTTTCATTTTTTGAC
TTGTGGTTTAATCCAAGCTGTTCTCATTTCTTGACTCAGTGTTTAAACCCGATCGCATTCATCTT
CTGACTAACGG
Found at i:5393748 original size:36 final size:34
Alignment explanation
Indices: 5393685--5395808 Score: 226
Period size: 35 Copynumber: 61.2 Consensus size: 34
5393675 AACTCGTAGC
* *
5393685 TTAATTCCAGTCATTTTCATTTCCTGACTCATGGT
1 TTAA-TCCAGTCATTTTCTTTTTCTGACTCATGGT
* *
5393720 TTAATCCTGTTCATTTTTCTTTTTCTGACTGATGGT
1 TTAATCCAG-TCA-TTTTCTTTTTCTGACTCATGGT
*
5393756 TTAATCCCAGTCATTTCCATTTTT-TGACTCATGGT
1 TTAAT-CCAGTCATTTTC-TTTTTCTGACTCATGGT
* * * *
5393791 TTAATCTTAGTCATTTCCATTTTCTTG-CT-AGTGCT
1 TTAATC-CAGTCATTTTCTTTTTC-TGACTCA-TGGT
* *
5393826 TTAGTCTAAGTCATTTTCTTTTTCTGACTCAAT-GT
1 TTAATC-CAGTCATTTTCTTTTTCTGACTC-ATGGT
* ** * *
5393861 TTAATCCCACTTGTTTTCGTTTTCTAACTCATGGT
1 TTAAT-CCAGTCATTTTCTTTTTCTGACTCATGGT
** * * **
5393896 TTAATCCATGTTGTTTTTCATTTTT-TAACTCGTACT
1 TTAATCCA-G-TCATTTTC-TTTTTCTGACTCATGGT
* * *
5393932 TTAATCTCAGTCATTTTC-ATTTCTTAACTCATGAT
1 TTAATC-CAGTCATTTTCTTTTTC-TGACTCATGGT
* * * *** * * *
5393967 TCAAACTAGTCGCATTCATTTTCTAACTCGTGGT
1 TTAATCCAGTCATTTTCTTTTTCTGACTCATGGT
*
5394001 TTAGTCTC-GATCA--TT-TTTTT-T---TCAT--T
1 TTAATC-CAG-TCATTTTCTTTTTCTGACTCATGGT
* * * *
5394027 TT--TCGA-TCGTTTTCATTTTCTGACTCGTGGTT
1 TTAATCCAGTCATTTTCTTTTTCTGACTCATGG-T
* *
5394059 TTAATCCCAATCATTTTCATTTTCTGACTCAAT-GT
1 TTAAT-CCAGTCATTTTCTTTTTCTGACTC-ATGGT
* *
5394094 TTAATCTCGGTCATTTTCATTTTT-TGACTCGTGGT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* ** *
5394129 TTAATCCTTA-TCGTTTTCATTTTT-TGACTGGTGAT
1 TTAATCC--AGTCATTTTC-TTTTTCTGACTCATGGT
** * * *
5394164 TTAATCTTGGTCATTTT-TTATTTATGACTCGTGAT
1 TTAATC-CAGTCATTTTCTT-TTTCTGACTCATGGT
* * *
5394199 TTAATCTCAGTCGTTGTCATTTTT-TGACTCATGAT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* * * *
5394234 TTAATCC--TGATTGTT-TTAATTTCTTAACTCGTGAT
1 TTAATCCAGTCATT-TTCTT--TTTC-TGACTCATGGT
* * ** * *
5394269 TTAAACCCGATTGTATTCATTTTT-TGACTCGTGGT
1 TTAATCCAG-TCATTTTC-TTTTTCTGACTCATGGT
* ***
5394304 TTAATCCTGGTTGGTTTCATTTTT-TGACTCATGGT
1 TTAATCC-AGTCATTTTC-TTTTTCTGACTCATGGT
* * * *
5394339 TTAATCTCGGTCGTTTTCATTTTCTGACTCATGAT
1 TTAATC-CAGTCATTTTCTTTTTCTGACTCATGGT
* * * *
5394374 TTAATCTC-GATC-TTTTTTATTTTCTAACTCGTAGT
1 TTAATC-CAG-TCATTTTCT-TTTTCTGACTCATGGT
** *
5394409 TTAATACGGGTCATTTTCATTTTT-TGACTCATAGT
1 TTAAT-CCAGTCATTTTC-TTTTTCTGACTCATGGT
* * ** *
5394444 TTAATCTCAGTTATTTTCATTTTT-TAACTTGTGAT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* *
5394479 TTAATTTC-GATCATTTT-TTGTTCTCTGACAT-ATGAT
1 TTAA-TCCAG-TCATTTTCTT-TT-TCTGAC-TCATGGT
* * * ** ** **
5394515 TTAGTTTCGGTGTTTTTGATTTTCTGACTCATCAT
1 TTA-ATCCAGTCATTTTCTTTTTCTGACTCATGGT
* *
5394550 TTATTCTCAGT-AGTTTTCGATTTT-TGA--CATGTGAT
1 TTAATC-CAGTCA-TTTTC-TTTTTCTGACTCATG-G-T
* *
5394585 TTAATATC-GATCATTTTCATTTCTTC-GACTCATGAT
1 TTAAT-CCAG-TCATTTTC-TTT-TTCTGACTCATGGT
* ** ** *
5394621 TTAAT-GATGATTGTTTTTCATTTTT-TGACTTGTGAT
1 TTAATCCA-G--TCATTTTC-TTTTTCTGACTCATGGT
** * *
5394657 TTAATCTTGATCGTTTTCATTTTT-TGACTCACGGT
1 TTAATCCAG-TCATTTTC-TTTTTCTGACTCATGGT
* *
5394692 TTAATCCTGATCATTTTCATTTTT-TGACTCGTGGT
1 TTAATCCAG-TCATTTTC-TTTTTCTGACTCATGGT
* *
5394727 TTAATCTCGGTTC-TTTT-TGTTTTCTGACTCATGAT
1 TTAATC-CAG-TCATTTTCT-TTTTCTGACTCATGGT
*** * *
5394762 TTAATTTTGGTCATTTT-TTTTT-T-ACTTACGGT
1 TTAA-TCCAGTCATTTTCTTTTTCTGACTCATGGT
* ** ** *
5394794 TTAATTCCCA-TCGCTTTT-AATCCCTGACTCATGAT
1 TTAA-T-CCAGTC-ATTTTCTTTTTCTGACTCATGGT
** * * *
5394829 TTAATCTTGGTCATTTTCATTTTTTTGATTCATGAT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* ** * * *
5394865 TTAATCCTTGTTGTTTTCATTTTCTGACTCGTGAT
1 TTAATCC-AGTCATTTTCTTTTTCTGACTCATGGT
*** ** * * * ** *
5394900 TTAATTTTGGTTGTTTTCATTATCTCAGACGTGGT
1 TTAA-TCCAGTCATTTTCTTTTTCTGACTCATGGT
* * * * * *
5394935 CTAATCC-TTCGCATTTT-TATTTTATGGCTCGTGTT
1 TTAATCCAGT--CATTTTCT-TTTTCTGACTCATGGT
* * * *
5394970 TTATTTCAGTCATTTTCATTTTCTGACTCATAGT
1 TTAATCCAGTCATTTTCTTTTTCTGACTCATGGT
* *
5395004 TTAATCTC-GATCATTTTCATTTTCTGAC-CAATAGT
1 TTAATC-CAG-TCATTTTCTTTTTCTGACTC-ATGGT
* * * **
5395039 TTAAT-CATGATCGTTTTTCTTTTTTTGATTGGTGGT
1 TTAATCCA-G-TC-ATTTTCTTTTTCTGACTCATGGT
* **
5395075 TTAATCCTAGT--TGTTTCTATTTTTTGACTTGTGGT
1 TTAATCC-AGTCAT-TTTCT-TTTTCTGACTCATGGT
** *
5395110 TTAATCTGGCTCATTTTCATTTTT-TGACTCATGGC
1 TTAATCCAG-TCATTTTC-TTTTTCTGACTCATGGT
*
5395145 TTAAT-CAGGATTATTTTCATTTTT-TGACTCATGGT
1 TTAATCCA-G-TCATTTTC-TTTTTCTGACTCATGGT
* *
5395180 TTAATCATAGTCATTTTCATTTTT-TGACTCGTGGT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* ** *
5395215 TTAATCCCTA-TCATTTTTCTTTTTTTGA-TGGGTAGT
1 TTAAT-CC-AGTCA-TTTTCTTTTTCTGACT-CATGGT
* ** * **
5395251 TTAATCCTAATTGTTTTCATTTTCTGACTTGTGGT
1 TTAATCC-AGTCATTTTCTTTTTCTGACTCATGGT
* * * * **
5395286 TTAATCCTGGTCGTTTTCATTTTCTGATTTGTGGT
1 TTAATCC-AGTCATTTTCTTTTTCTGACTCATGGT
** ** *
5395321 TTAATCTGGGTTGTTCTCATTTTT-TGACTCATGGT
1 TTAATC-CAGTCATTTTC-TTTTTCTGACTCATGGT
* * * *
5395356 TTAATCCCCGTCATTTTCATCTTCCGACTCATGGT
1 TTAAT-CCAGTCATTTTCTTTTTCTGACTCATGGT
* * * *
5395391 TTAATCGC-GATCATTTTCATTTTTTTAACTTACGGT
1 TTAATC-CAG-TCATTTTC-TTTTTCTGACTCATGGT
* * * *
5395427 TTAATCTCGGTCGTTCTTCATTTTT-TGACTCGTGTT
1 TTAATC-CAGTCATT-TTC-TTTTTCTGACTCATGGT
* * * * *
5395463 TTCAT-CACGATCGTTTTC-ATTTCTTGACTCGTGAT
1 TTAATCCA-G-TCATTTTCTTTTTC-TGACTCATGGT
* * *** *
5395498 TTAAACCCGATCGCATTCATTTTCTGACTCATGGT
1 TTAATCCAG-TCATTTTCTTTTTCTGACTCATGGT
* **
5395533 TTAATCCCAATC-TTTT-TTCTTT-T---TCATTTT
1 TTAAT-CCAGTCATTTTCTT-TTTCTGACTCATGGT
* * * * * * *
5395563 TTTAT--AG---TTCTCATTTTCTAACTCGTAGC
1 TTAATCCAGTCATTTTCTTTTTCTGACTCATGGT
* * * *
5395592 TTAATTCCAGTTATTTTCATTTCCTAACTCATGGT
1 TTAA-TCCAGTCATTTTCTTTTTCTGACTCATGGT
* * *
5395627 TTAATCCTGTTCATTTTTCTTTTGCTGACTAATGGT
1 TTAATCCAG-TCA-TTTTCTTTTTCTGACTCATGGT
* * *
5395663 TTAATCCCGATCATTTCCATTTTCTGACTCATGGT
1 TTAATCCAG-TCATTTTCTTTTTCTGACTCATGGT
* * * * * *
5395698 TTAATCTTAGTCGTTTCCATTTTCTGGCTCATGCT
1 TTAATC-CAGTCATTTTCTTTTTCTGACTCATGGT
* *
5395733 TTAGTCTAGGTCATTTTCTTTTT-TCGACTCAAT-GT
1 TTAATCCA-GTCATTTTCTTTTTCT-GACTC-ATGGT
* ** * *
5395768 TTAATCTCACTTGTCTTT-GTTTTCTGACTCGTGGT
1 TTAATC-CAGTCAT-TTTCTTTTTCTGACTCATGGT
5395803 TTAATC
1 TTAATC
5395809 TAGGTTGTTT
Statistics
Matches: 1559, Mismatches: 351, Indels: 358
0.69 0.15 0.16
Matches are distributed among these distances:
22 2 0.00
24 4 0.00
25 10 0.01
26 6 0.00
27 1 0.00
28 3 0.00
29 9 0.01
30 10 0.01
31 3 0.00
32 26 0.02
33 32 0.02
34 127 0.08
35 953 0.61
36 317 0.20
37 47 0.03
38 7 0.00
39 2 0.00
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.51
Consensus pattern (34 bp):
TTAATCCAGTCATTTTCTTTTTCTGACTCATGGT
Found at i:5395115 original size:106 final size:103
Alignment explanation
Indices: 5395002--5395361 Score: 289
Period size: 106 Copynumber: 3.4 Consensus size: 103
5394992 CTGACTCATA
* *
5395002 GTTTAATCTCGATCATTTTCATTTTCTGACCAATAGTTTAATCATGATCGTTTTTCTTTTTTTGA
1 GTTTAATCTCGATCATTTTCATTTTTTGACC-ATAGTTTAATCATGAT-GTTTTTCATTTTTTGA
5395067 TTGGTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTTGTG
64 TT-GTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTTGTG
* * * * *
5395108 GTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGAT-TATTTTCATTTTTTGA
1 GTTTAATCTCGATCATTTTCATTTTTTGAC-CATAGTTTAATCATGATGT-TTTTCATTTTTTGA
** * *
5395172 CTCATGGTTTAATCATAGTCAT-TTTC-ATTTTTTGACTCGTG
64 -TTGTGGTTTAATCCTAGT--TGTTTCTATTTTTTGACTTGTG
* * * *** * * *
5395213 GTTTAATCCCTATCATTTTTCTTTTTTTGATGGGTAGTTTAATCCTAAT-TGTTTTCATTTTCTG
1 GTTTAATCTCGATCA-TTTTCATTTTTTGA-CCATAGTTTAATCATGATGT-TTTTCATTTTTTG
* * * *
5395277 ACTTGTGGTTTAATCCTGGTCGTTT-TCATTTTCTGATTTGTG
63 A-TTGTGGTTTAATCCTAGTTGTTTCT-ATTTTTTGACTTGTG
* * ** * *
5395319 GTTTAATCTGGGTTGTTCTCATTTTTTGACTCATGGTTTAATC
1 GTTTAATCTCGATCATTTTCATTTTTTGAC-CATAGTTTAATC
5395362 CCCGTCATTT
Statistics
Matches: 197, Mismatches: 46, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
104 1 0.01
105 76 0.39
106 118 0.60
107 2 0.01
ACGTcount: A:0.17, C:0.14, G:0.16, T:0.53
Consensus pattern (103 bp):
GTTTAATCTCGATCATTTTCATTTTTTGACCATAGTTTAATCATGATGTTTTTCATTTTTTGATT
GTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTTGTG
Found at i:5395253 original size:141 final size:141
Alignment explanation
Indices: 5394979--5395256 Score: 325
Period size: 141 Copynumber: 2.0 Consensus size: 141
5394969 TTTATTTCAG
* *
5394979 TCATTTTCATTTTCTGACTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCAATAGTTTAAT
1 TCATTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTCTGACCAATAGTTTAAT
* * * * * *
5395044 CATGATCGTTTTTCTTTTTTTGATTGGTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTTGTGG
66 CATGATCGATTTTCATTTTTTGACTCGTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTGGTAG
5395109 TTTAATCTGGC
131 TTTAATCTGGC
* * * * * *
5395120 TCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTGACTC-ATGGTTTAA
1 TCATTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTCTGAC-CAATAGTTTAA
*
5395184 TCAT-AGTC-ATTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTCT-TTTTTTGA-T
65 TCATGA-TCGATTTTCATTTTTTGACTCGTGGTTTAAT-CCTAGT--TGTTTCTATTTTTTGACT
5395244 GGGTAGTTTAATC
126 -GGTAGTTTAATC
5395257 CTAATTGTTT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
140 27 0.23
141 82 0.71
142 7 0.06
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.53
Consensus pattern (141 bp):
TCATTTTCATTTTCTGACTCATAGCTTAATCACGATCATTTTCATTTTCTGACCAATAGTTTAAT
CATGATCGATTTTCATTTTTTGACTCGTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTGGTAG
TTTAATCTGGC
Found at i:5395406 original size:176 final size:176
Alignment explanation
Indices: 5394985--5395416 Score: 523
Period size: 176 Copynumber: 2.5 Consensus size: 176
5394975 TCAGTCATTT
* * * *
5394985 TCATTTTCTGACTCATAGTTTAAT-CTCGATCATTTTCATTTTCTGAC-CAATAGTTTAATCATG
1 TCATTTTTTGACTCATGGTTTAATCCTCG-TCATTTTCATTTTCTGACTC-ATGGTTTAATCACG
* * * * *
5395048 ATCGTTTTTCTTTTTTTGATTGGTGGTTTAATCCTAGTTGTTTCTATTTTTTGACTTGTGGTTTA
64 ATCATTTTTCTTTTTTTGATGGGTAGTTTAATCCTAATTGTTTCTATTTTCTGACTTGTGGTTTA
* *
5395113 ATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTT
129 ATCTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTC
* * * * * *
5395161 TCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTTTAATCCCTAT
1 TCATTTTTTGACTCATGGTTTAATCCTCGTCATTTTCATTTTCTGACTCATGGTTTAATCACGAT
5395226 CATTTTTCTTTTTTTGATGGGTAGTTTAATCCTAATTGTTT-TCATTTTCTGACTTGTGGTTTAA
66 CATTTTTCTTTTTTTGATGGGTAGTTTAATCCTAATTGTTTCT-ATTTTCTGACTTGTGGTTTAA
* * ** * * * *
5395290 TCCTGG-TCGTTTTCATTTTCTGATTTGTGGTTTAATCTGGGTTGTTC
130 T-CTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTC
* * * *
5395337 TCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTCCGACTCATGGTTTAATCGCGAT
1 TCATTTTTTGACTCATGGTTTAATCCTCGTCATTTTCATTTTCTGACTCATGGTTTAATCACGAT
5395402 CA-TTTTCATTTTTTT
66 CATTTTTC-TTTTTTT
5395417 AACTTACGGT
Statistics
Matches: 217, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
175 6 0.03
176 204 0.94
177 7 0.03
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (176 bp):
TCATTTTTTGACTCATGGTTTAATCCTCGTCATTTTCATTTTCTGACTCATGGTTTAATCACGAT
CATTTTTCTTTTTTTGATGGGTAGTTTAATCCTAATTGTTTCTATTTTCTGACTTGTGGTTTAAT
CTGGCTCATTTTCATTTTCTGACTCATGGCTTAATCAGGATTATTC
Found at i:5395509 original size:107 final size:106
Alignment explanation
Indices: 5395318--5395509 Score: 235
Period size: 107 Copynumber: 1.8 Consensus size: 106
5395308 TCTGATTTGT
* * *
5395318 GGTTTAATCTGGGTTGTTCTCATTTTTTGACTCATGGTTTAATCCCCGTCATTTTCATCTTCCGA
1 GGTTTAATCTCGGTCGTTCTCATTTTTTGACTCATGGTTTAATCCACGTCATTTTCATCTTCCGA
* * *
5395383 CTCATGGTTTAATCGCGATCATTTTCATTTTTTTAACTTAC
66 CTCATGATTTAAACCCGATCATTTTCATTTTTTTAACTTAC
* * * *
5395424 GGTTTAATCTCGGTCGTTCTTCATTTTTTGACTCGTGTTTTCAT-CACGATCGTTTTCAT-TTCT
1 GGTTTAATCTCGGTCGTTC-TCATTTTTTGACTCATGGTTTAATCCACG-TCATTTTCATCTTC-
* *
5395487 TGACTCGTGATTTAAACCCGATC
63 CGACTCATGATTTAAACCCGATC
5395510 GCATTCATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
106 23 0.32
107 48 0.68
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.46
Consensus pattern (106 bp):
GGTTTAATCTCGGTCGTTCTCATTTTTTGACTCATGGTTTAATCCACGTCATTTTCATCTTCCGA
CTCATGATTTAAACCCGATCATTTTCATTTTTTTAACTTAC
Found at i:5396004 original size:35 final size:35
Alignment explanation
Indices: 5395935--5396020 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
5395925 TTTTTATTTT
* **
5395935 TCGATCGTTTTCATTTTCTGACTTGTGGTATAATC
1 TCGATCGTTTTCCTTTTCTGACTAATGGTATAATC
*
5395970 -CGAATCGTTTTCCTTTTCTGACTCAAT-GTTTAATC
1 TCG-ATCGTTTTCCTTTTCTGACT-AATGGTATAATC
*
5396005 TCGATTGTTTTCCTTT
1 TCGATCGTTTTCCTTT
5396021 CTCTAGCTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
34 2 0.05
35 38 0.88
36 3 0.07
ACGTcount: A:0.16, C:0.20, G:0.14, T:0.50
Consensus pattern (35 bp):
TCGATCGTTTTCCTTTTCTGACTAATGGTATAATC
Found at i:5396073 original size:35 final size:34
Alignment explanation
Indices: 5396034--5396436 Score: 121
Period size: 35 Copynumber: 11.6 Consensus size: 34
5396024 TAGCTAGTGG
* *
5396034 TTTAATCTTAGTCATTTTTATTTTCTAACTCGTGG
1 TTTAATCTTAGTCATTTTTATTTT-TGACTCGTGA
*
5396069 TTTAATCCTTA-TC-TTTTTCATTTTTGACTAGTGA
1 TTTAAT-CTTAGTCATTTTT-ATTTTTGACTCGTGA
* * *
5396103 TTTAATCCTGGTCATTTTTTATTTATGACTCGTGA
1 TTTAATCTTAGTCA-TTTTTATTTTTGACTCGTGA
* * * * * **
5396138 TTTAATCTCAGTCGTTGTCATTTTTTGATTAATGA
1 TTTAATCTTAGTCATTTTTA-TTTTTGACTCGTGA
* ** * *
5396173 TTTAATC-TCGATTGTTTTCATTTCTTAACTCGTGA
1 TTTAATCTTAG-TCATTTTTATTT-TTGACTCGTGA
* *
5396208 TTTAAAC-TCG--ATTGTATTCATTTTTTGACTCGT-A
1 TTTAATCTTAGTCATT-T-TT-A-TTTTTGACTCGTGA
* * * * * *
5396242 GTTTAATCCTGGTCGTTTTCATTTTTTGACTCATGG
1 -TTTAATCTTAGTCATTTTTA-TTTTTGACTCGTGA
* * * *
5396278 TTTAATC-TCGATCGTTTTCATTTTCTGACTCGAGA
1 TTTAATCTTAG-TCATTTTTATTTT-TGACTCGTGA
* * *
5396313 TTTAATC-TGGATCTTTTTTATTTTCTAACTCGT-A
1 TTTAATCTTAG-TCATTTTTATTTT-TGACTCGTGA
** **
5396347 GTTTAATAC-GGGTCATTTTTATTTTTTGACTC-ACA
1 -TTTAAT-CTTAGTCATTTTTA-TTTTTGACTCGTGA
** * * *
5396382 GTTTAATCCCAGTCATTTTCATTTTTTAACTCATGA
1 -TTTAATCTTAGTCATTTTTA-TTTTTGACTCGTGA
*
5396418 TTTAAT-TTCGGTCATTTTT
1 TTTAATCTT-AGTCATTTTT
5396437 CGTTCTCTGA
Statistics
Matches: 284, Mismatches: 58, Indels: 52
0.72 0.15 0.13
Matches are distributed among these distances:
32 2 0.01
33 3 0.01
34 38 0.13
35 215 0.76
36 23 0.08
37 1 0.00
38 2 0.01
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.52
Consensus pattern (34 bp):
TTTAATCTTAGTCATTTTTATTTTTGACTCGTGA
Found at i:5396649 original size:35 final size:35
Alignment explanation
Indices: 5396605--5397802 Score: 349
Period size: 35 Copynumber: 34.6 Consensus size: 35
5396595 ATTTCATCTC
* *
5396605 GATCGTTTTCATTTTTTGACTCACGGTTTAATCCT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * *
5396640 GATCATTTTCAATTTTTAACTCGTGGTTTAAT-CT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* ** ** * * **
5396674 CGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTT
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * *
5396710 GGTCATTTTCATTTTTTGCCTTACGGTTTAATTCC-
1 GATCATTTTCATTTTTTGACTCATGGTTTAA-TCCT
* * * ** * *
5396745 CATCGCTTTT-GTTCCTTGACTCATGATTTAATCTT
1 GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCT
* * *
5396780 GGTCATTTTCATTTTTCTGACTCGTGATTTAATCCTT
1 GATCATTTTCATTTTT-TGACTCATGGTTTAATCC-T
** * **
5396817 G-TTGTTTTCATTTTCTGA--CATGTGATTTAATTTTT
1 GATCATTTTCATTTTTTGACTCATG-G-TTTAA-TCCT
** * * ** *
5396852 G-TTGTTTTCA-TTATCGA-AGATGCGGTCTAATCCCT
1 GATCATTTTCATTTTTTGACTCAT--GGTTTAAT-CCT
* * * *
5396887 CG-T-ATTTTCATTTTATGATTCGTGGTTT-ATTCT
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * * **
5396920 CAGTCATTTTCATTTTCTAACACATAATTTAAT-CT
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT
* *
5396955 CGATCATTTTTATTTTTTGACCCATGGTTTAATCCT
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* ** *
5396991 GATCATTTT--TTTTTTTACTGGTGGTTTAATCTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* ** * **
5397024 GGTTGTTTCCATTTTTTGACTTGTGGTTTAAT-CT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * * **
5397058 GGCTTATTTTCATTTTTTGACTCATAGCTTAATCAG
1 -GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * *
5397094 GATTATTTTTATTTTTTGACTCATGGTTTAATCAT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* *
5397129 -AGTCATTTTCATTTTTTGACTCGTGGTTTAATCGT
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * *
5397164 GGTCCTTTTTCATTTTTTAACTCATGGTTTAATCCCT
1 GAT-CATTTTCATTTTTTGACTCATGGTTTAAT-CCT
* ** *
5397201 -ATCATTTT--TTTTATGGGT-A--G-TTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* ** *
5397229 AATCATTTTCATTTTTTGACTTGTGGTTTAATCTT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * * *
5397264 GGTCGTTTTCATTTTCTGATTTATGGTTTAAT-CT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* **
5397298 GGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCT
1 -GATCATTTTCATTTTTTGACTCATGGTTTAAT-CCT
* * * *
5397335 -ATCGTTTTCATCTTTCGACTCACGGTTTAATCGC-
1 GATCATTTTCATTTTTTGACTCATGGTTTAATC-CT
5397369 GATCATTTTCAATTTTTTGACT--TGCGATTTAAT-CT
1 GATCATTTTC-ATTTTTTGACTCATG-G-TTTAATCCT
** * *
5397404 CGATTGTTCTTCATTTTTTTACTCGT-GTCTTAATCAC-
1 -GATCATT-TTCATTTTTTGACTCATGGT-TTAATC-CT
* * * * * *
5397441 GATCGTTTTCATTTCTTGACTCGTGATTTAAACCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
*** * * *
5397476 GATCGCATTCATTTTCTGACTTATGGTTTAATCCC
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * *
5397511 AATCCTTTT--TCTTTT---TCAT--TTT--T--T
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * * * * * *
5397535 TATCGTTCTCATTTTCTAACTCATAGCTTAAT-TT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* **
5397569 CAGTCATTTTCATTTCCTGACTCATGGTTTAATCCT
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT
* *
5397605 GTTCATTTTTC-TTTTTCTGACT-AGTGGTTTAATCCC
1 GATCA-TTTTCATTTTT-TGACTCA-TGGTTTAATCCT
* * *
5397641 GGTCATTTCCATTTTCTGACTCATGGTTTAAT-CT
1 GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
* * * * * ** *
5397675 TAGTCGTTTCCATTTTCTGGCTTGTGCTTTAAT-CT
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT
*
5397710 AGGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCC-
1 -GATCATTTTCATTTTT-TGACTC-ATGGTTTAATCCT
* ** * * * *
5397745 CACTTGTTTTCGTTTTCTAACTCGTGGTTTAATCC-
1 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT
* *
5397780 CAGTCATTTTCATTTCTTGACTC
1 GA-TCATTTTCATTTTTTGACTC
5397803 GTGATTCAAA
Statistics
Matches: 852, Mismatches: 229, Indels: 164
0.68 0.18 0.13
Matches are distributed among these distances:
24 6 0.01
26 5 0.01
28 5 0.01
29 17 0.02
30 4 0.00
31 9 0.01
32 1 0.00
33 40 0.05
34 32 0.04
35 567 0.67
36 153 0.18
37 11 0.01
38 2 0.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (35 bp):
GATCATTTTCATTTTTTGACTCATGGTTTAATCCT
Found at i:5397068 original size:138 final size:139
Alignment explanation
Indices: 5396925--5397197 Score: 336
Period size: 138 Copynumber: 2.0 Consensus size: 139
5396915 ATTCTCAGTC
* * *
5396925 ATTTTCATTTTCTAACACATAATTTAATCTCGATCATTTTTATTTTTTGACCCATGGTTTAATCC
1 ATTTTCATTTTCTAACACATAACTTAATCACGATCATTTTTATTTTTTGACCCATGGTTTAATCA
* * * * **
5396990 T-GATCATTTT-TTTTTTTACTGGTGGTTTAATCTTGGT-TGTTTCCATTTTTTGACTTGTGGTT
66 TAG-TCATTTTATTTTTTGACTCGTGGTTTAATCGTGGTCT-TTTCCATTTTTTAACTCATGGTT
5397052 TAATCTGGCTT
129 TAATCTGGCTT
* * * * * * *
5397063 ATTTTCATTTTTTGACTCATAGCTTAATCAGGATTATTTTTATTTTTTGACTCATGGTTTAATCA
1 ATTTTCATTTTCTAACACATAACTTAATCACGATCATTTTTATTTTTTGACCCATGGTTTAATCA
*
5397128 TAGTCATTTTCATTTTTTGACTCGTGGTTTAATCGTGGTCCTTTTTCATTTTTTAACTCATGGTT
66 TAGTCATTTT-ATTTTTTGACTCGTGGTTTAATCGTGGT-CTTTTCCATTTTTTAACTCATGGTT
5397193 TAATC
129 TAATC
5397198 CCTATCATTT
Statistics
Matches: 113, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
138 63 0.56
139 1 0.01
140 24 0.21
141 24 0.21
142 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (139 bp):
ATTTTCATTTTCTAACACATAACTTAATCACGATCATTTTTATTTTTTGACCCATGGTTTAATCA
TAGTCATTTTATTTTTTGACTCGTGGTTTAATCGTGGTCTTTTCCATTTTTTAACTCATGGTTTA
ATCTGGCTT
Found at i:5397260 original size:135 final size:134
Alignment explanation
Indices: 5397098--5397342 Score: 341
Period size: 135 Copynumber: 1.8 Consensus size: 134
5397088 AATCAGGATT
* * *
5397098 ATTTTTATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTTTGACTCGTGGTTTAATC-
1 ATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTCTGACTCATGGTTTAATCT
5397162 GTGGTCCT-TTTTCATTTTTTAACTCATGGTTTAATCCCTATCATTTTTTTTATGGGTAGTTAAT
66 G-GGT--TGTTTTCATTTTTTAACTCATGGTTTAATCCCTATCATTTTTTTTATGGGTAGTTAAT
5397226 CCCAATC
128 CCCAATC
** * * * * *
5397233 ATTTTCATTTTTTGACTTGTGGTTTAATCTTGGTCGTTTTCATTTTCTGATTTATGGTTTAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTCTGACTCATGGTTTAATCT
* *
5397298 GGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCTATCGTTTT
66 GGGTTGTTTTCATTTTTTAACTCATGGTTTAATCCCTATCATTTT
5397343 CATCTTTCGA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
133 1 0.01
134 37 0.39
135 57 0.59
136 1 0.01
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.54
Consensus pattern (134 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCATAGTCATTTTCATTTTCTGACTCATGGTTTAATCT
GGGTTGTTTTCATTTTTTAACTCATGGTTTAATCCCTATCATTTTTTTTATGGGTAGTTAATCCC
AATC
Found at i:5397988 original size:69 final size:70
Alignment explanation
Indices: 5397879--5398111 Score: 210
Period size: 69 Copynumber: 3.3 Consensus size: 70
5397869 TTCAATCATT
* *
5397879 TTTTTTGACTCGTGGTTTAATCCCAATCATTTTCGTTTTCTGACTCATGATTTAATCTCGATCGT
1 TTTTTTGACTCGTGATTTAATCCCAATCATTTTCGTTTTCTGACTCATGATTTAATCTCGATCAT
5397944 TTTCA
66 TTTCA
* ** ** * * * *
5397949 -TTTTTGACTCGTGATTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAATTTTGGTCAT
1 TTTTTTGACTCGTGATTTAATCCCAATCATTTTCGTTTTCTGACTCATGATTTAATCTCGATCAT
5398013 TTTCA
66 TTTCA
* * * *
5398018 TTTTTTGACTTACG-G-TTTAATTCCC-ATCGCTTTT--ATTCCATGACTCATGATTTAATCCTT
1 TTTTTTGAC-T-CGTGATTTAA-TCCCAATC-ATTTTCGTTTTC-TGACTCATGATTTAAT-CTC
5398078 G-TCATTTTCA
60 GATCATTTTCA
*
5398088 TTTTTCTGATTCGTGATTTAATCC
1 TTTTT-TGACTCGTGATTTAATCC
5398112 TTGTTGTTTT
Statistics
Matches: 134, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
69 63 0.47
70 49 0.37
71 20 0.15
72 2 0.01
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (70 bp):
TTTTTTGACTCGTGATTTAATCCCAATCATTTTCGTTTTCTGACTCATGATTTAATCTCGATCAT
TTTCA
Found at i:5398027 original size:35 final size:35
Alignment explanation
Indices: 5397879--5398942 Score: 291
Period size: 35 Copynumber: 30.5 Consensus size: 35
5397869 TTCAATCATT
* * *** *
5397879 TTTTTTGACTCGTGGTTTAATCCCAATCATTTTCG
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * *
5397914 TTTTCTGACTCATGATTTAAT-CTCGATCGTTTTCA
1 TTTTTTGACTCATGATTTAATCCT-GGTCATTTTCA
* ** **
5397949 -TTTTTGACTCGTGATTTAAT-CTCGGTTGTTTTTG
1 TTTTTTGACTCATGATTTAATCCT-GGTCATTTTCA
* **
5397983 TTTTCTGACTCATGATTTAATTTTGGTCATTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * *
5398018 TTTTTTGACTTACGGTTTAATTCCCATCG-C-TTTT-A
1 TTTTTTGACTCATGATTTAA-T-CC-TGGTCATTTTCA
*** *
5398053 TTCCATGACTCATGATTTAATCCTTGTCATTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * **
5398088 TTTTTCTGATTCGTGATTTAATCCTTGTTGTTTTCA
1 TTTTT-TGACTCATGATTTAATCCTGGTCATTTTCA
* ** ** **
5398124 TTTTCTGACTTGTGATTTAATTTTGGTTGTTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * ** * * * *
5398159 TTATCTAAGACACGGTCTAATCCCTCG-CATTTTCA
1 TTTTTTGACTCATGATTTAAT-CCTGGTCATTTTCA
* * * **
5398194 TTTTATGACTCGTGATTTATTCCCAGTCATTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * *
5398229 TTTTCTGA-TCCATGGTTT-ATCCTGATCATTTTTCT
1 TTTTTTGACT-CATGATTTAATCCTGGTCA-TTTTCA
** * * *
5398264 TTTTTTGACTGGTGGTTTAATACTAGT--TGTTTCTA
1 TTTTTTGACTCATGATTTAATCCTGGTCAT-TTTC-A
* * *
5398299 GTTTTTGACTTATGGTTTAAT-CTGGCTCATTTTCA
1 TTTTTTGACTCATGATTTAATCCTGG-TCATTTTCA
* * * * *
5398334 TTTTCTGGCTCATGACTTAAT-CAGGATTATTTTCA
1 TTTTTTGACTCATGATTTAATCCTGG-TCATTTTCA
* ** * *
5398369 TTTTTTGACTCATGGTTTAATTATAGTCTTTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * * *
5398404 TTTTTTGACTCGTGGTCTAATCGTGGTCTTTTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTC-ATTTTCA
** * *
5398440 TTTTTTGACTTGTGGTTTAATCCCT-ATCATTTT--
1 TTTTTTGACTCATGATTTAAT-CCTGGTCATTTTCA
** ** *** * *
5398473 TTTTACGGGT-A-G-TTTAATCCCAATCGTTTTTA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* ** * **
5398505 TTTTCTGACTTGTGGTTTAATCCTGGTTGTTTTCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* ** * **
5398540 TTTTTTGATTTGTGGTTTAAT-CTGGGTTGTTTTCA
1 TTTTTTGACTCATGATTTAATCCT-GGTCATTTTCA
* *
5398575 TTTTTTGACTCATGGTTTAATCCCT-GTCGTTTTCA
1 TTTTTTGACTCATGATTTAAT-CCTGGTCATTTTCA
* ** * *
5398610 TCTTCCGACTC-TCGGTTTAATCGTGGTCATTTTCA
1 TTTTTTGACTCAT-GATTTAATCCTGGTCATTTTCA
* * * * * *
5398645 TTTTTTTGACTTACGATTTAATCTTGATCGTTCTTTA
1 -TTTTTTGACTCATGATTTAATCCTGGTCATT-TTCA
* * * *
5398682 TTTTTTGACTCGTGTTTTAATCAC-GATCGTTTTCA
1 TTTTTTGACTCATGATTTAATC-CTGGTCATTTTCA
* * * * * * *
5398717 TTTCTTAACTCGTGATTTAAACCCGATCGTATTT-A
1 TTTTTTGACTCATGATTTAATCCTGGTCAT-TTTCA
* * * * *
5398752 TTTTTTGACTCATGGTTTAATCTTAGTCGTTTCCA
1 TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
* * * * * *
5398787 TTTTCTGGCTCGTGCTTTAGT-CTAGGTCATTTTCT
1 TTTTTTGACTCATGATTTAATCCT-GGTCATTTTCA
* **
5398822 TTTTTTGACTCAATG-TTTAACTCAC--CT-ATTTTTG
1 TTTTTTGACTC-ATGATTTAA-TC-CTGGTCATTTTCA
* * * **
5398856 TTTTTTGACTCATGGTTTAATCCAAGTTGTTTTTCA
1 TTTTTTGACTCATGATTTAATCC-TGGTCATTTTCA
** * * *
5398892 TTTTTCAACTCGT-ACTTT-ATCATAGTCATTTTCA
1 TTTTTTGACTCATGA-TTTAATCCTGGTCATTTTCA
*
5398926 TTTCTTGACTCATGATT
1 TTTTTTGACTCATGATT
5398943 CAAACTGGTC
Statistics
Matches: 762, Mismatches: 213, Indels: 109
0.70 0.20 0.10
Matches are distributed among these distances:
29 2 0.00
30 13 0.02
31 1 0.00
32 9 0.01
33 15 0.02
34 100 0.13
35 464 0.61
36 146 0.19
37 9 0.01
38 3 0.00
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (35 bp):
TTTTTTGACTCATGATTTAATCCTGGTCATTTTCA
Found at i:5398141 original size:141 final size:140
Alignment explanation
Indices: 5397919--5398237 Score: 355
Period size: 141 Copynumber: 2.3 Consensus size: 140
5397909 TTTCGTTTTC
* * * *
5397919 TGACTCATGATTTAAT-CTCGATCGTTTTCATTTT-TGACTCGTGATTTAATCTCGGTTGTTTTT
1 TGACTCATGATTTAATCCTAG-TCATTTTCATTTTCTGATTCGTGATTTAATCTCGGTTGTTTTC
* ** *
5397982 GTTTTCTGACTCATGATTTAATTTTGGTCATTTTCATT-T-TTTGACTTACGGTTTAATTCCCAT
65 ATTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTATCTAAGAC--ACGGTCTAA-TCCC-T
5398045 CGC-TTTT-ATTCCA
126 CGCATTTTCATTCCA
* *
5398058 TGACTCATGATTTAATCCTTGTCATTTTCATTTTTCTGATTCGTGATTTAATC-CTTGTTGTTTT
1 TGACTCATGATTTAATCCTAGTCATTTTCA-TTTTCTGATTCGTGATTTAATCTC-GGTTGTTTT
** **
5398122 CATTTTCTGACTTGTGATTTAATTTTGGTTGTTTTCATTATCTAAGACACGGTCTAATCCCTCGC
64 CATTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTATCTAAGACACGGTCTAATCCCTCGC
**
5398187 ATTTTCATTTTA
129 ATTTTCATTCCA
* * *
5398199 TGACTCGTGATTTATTCCCAGTCATTTTCATTTTCTGAT
1 TGACTCATGATTTAATCCTAGTCATTTTCATTTTCTGAT
5398238 CCATGGTTTA
Statistics
Matches: 153, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
139 28 0.18
140 25 0.16
141 95 0.62
142 1 0.01
143 4 0.03
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.51
Consensus pattern (140 bp):
TGACTCATGATTTAATCCTAGTCATTTTCATTTTCTGATTCGTGATTTAATCTCGGTTGTTTTCA
TTTTCTGACTCATGATTTAATTTTGGTCATTTTCATTATCTAAGACACGGTCTAATCCCTCGCAT
TTTCATTCCA
Found at i:5399106 original size:36 final size:37
Alignment explanation
Indices: 5399011--5399111 Score: 115
Period size: 35 Copynumber: 2.8 Consensus size: 37
5399001 TTTTCGATCA
*
5399011 TTTTCATTTTCTGACTC-GTGGTTTAATC-CTAATCG
1 TTTTCCTTTTCTGACTCAGTGGTTTAATCTCTAATCG
* *
5399046 TTTTCCTTTTCTGACTCAAT-GTTTAATCTC-AGTCG
1 TTTTCCTTTTCTGACTCAGTGGTTTAATCTCTAATCG
5399081 TTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 TTTTCC-TTTTCTGA-CTCAGTGGTTTAATCTC
5399112 GATTGTTCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
35 37 0.65
36 20 0.35
ACGTcount: A:0.16, C:0.21, G:0.13, T:0.50
Consensus pattern (37 bp):
TTTTCCTTTTCTGACTCAGTGGTTTAATCTCTAATCG
Found at i:5399319 original size:35 final size:35
Alignment explanation
Indices: 5399280--5399362 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 35
5399270 TTAATTCCAG
* *
5399280 TCATTTTCATTTCCTGACTCATGGTTTAATCCTGT
1 TCATTTTCATTTCCTGACTCAGGGTTTAATCCTGA
* * **
5399315 TCATTTTTCTTTTTCTGACTGGGGGTTTAATCCTGA
1 TCA-TTTTCATTTCCTGACTCAGGGTTTAATCCTGA
*
5399351 TCATTTCCATTT
1 TCATTTTCATTT
5399363 TCTAACTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 10 0.26
36 29 0.74
ACGTcount: A:0.16, C:0.20, G:0.13, T:0.51
Consensus pattern (35 bp):
TCATTTTCATTTCCTGACTCAGGGTTTAATCCTGA
Found at i:5399662 original size:35 final size:35
Alignment explanation
Indices: 5399622--5402137 Score: 793
Period size: 35 Copynumber: 71.6 Consensus size: 35
5399612 TTTTCAATCG
* **
5399622 TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5399657 TTTTCATTTTCTGACTCATGATTTAATCTCGATCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
** * *
5399692 TTTTCATTTTTTGACTCATGGTTTAATCTTGATCT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * **
5399727 TTTTCATTTTTTGACTCGTGATTTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
** * * *** *
5399762 TTTTTGTTTTCTGACTCATGATTTAATTTTGGACA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * *** *
5399797 -TTT--TTTTTT-ACTTACGGTTTAATTCTTATCGC
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTC-A
* *** * *
5399829 TTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * ** **
5399863 TTTTCATTTTTTTGATTCGTGATTTAATCCTTGTTG
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGGTCA
* ** * *** **
5399899 TTTTCATTTTCTGACTTGTGATTTAATTTTGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5399934 TTTTCATTATTTAAGACGC--GATCTAATCCCTCGT-A
1 TTTTCATT-TTT-TGACTCATGGTTTAATCCC-GGTCA
* * * * *
5399969 TTTTCATTTTATGACTCATGTTTTATTCTCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * *
5400004 TTTTCATTTTTTGA-TCCATGGTTTAATCCTGATCGT
1 TTTTCATTTTTTGACT-CATGGTTTAATCCCGGTC-A
* ** * * *
5400040 TTTTCTTTTTTTGACTGGTGGTTTAATACTGGTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** *
5400075 TTTTTAGTTTTTGACTTGTGGTTTAAT-CTGGCTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGG-TCA
* * *
5400110 TTTTCATTTTTTGACTCATGGCTTAAT-CAGGATTA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGG-TCA
* ***
5400145 TTTTCATTTTTTGACTCATGGCTTAATCATAGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** *
5400179 TTTTTTATTTTTTGACTCATGGTCTAATCGTGGTCTT
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCGGTC-A
* **
5400216 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* *** * **
5400251 TTTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCA
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* ** **
5400287 TTTTCA-TTTCTGACTTGTGGTTTAATCCTAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * ** **
5400321 TTTTTATTTTTTGATTTATGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* **
5400356 TTTTCATTTTTTGACTCATGGTTTAATCCCCGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5400391 TTTTCATCTTGTGACTCACGGTTTAATCGCTGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * **
5400426 TTTTCATTTTTTTGACTTACGGTTTAATCTCAGTTG
1 TTTTCA-TTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** * *
5400462 TTCTTCATTTTTTGACTCGTGTTTTAATCATGATCG
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5400498 TTTTCATTTCTTGACTCGTGATTTAAACCCGATTGCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCG-GT-CA
* * * * * **
5400535 --TTCAATTTCTAACACATAGTTTAATCCCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * *
5400568 TTTTTC-TTTTCCTGACTTATGGTTTAATCCTGGTCG
1 -TTTTCATTTT-TTGACTCATGGTTTAATCCCGGTCA
* *
5400604 TTTTCATTTTTTGACTCATGGTTTAATCTCGATCGA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTC-A
* * * ** *
5400640 -TTTCATTTTTTGAATCACGATTTAATCTTGATC-
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * * * *
5400673 TTTCTTATTTTCTAACTCGTAGTTTAATACGGGTCA
1 TTT-TCATTTTTTGACTCATGGTTTAATCCCGGTCA
* ** * *
5400709 TTTTCATTTTTTGACTAACAGTTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * **
5400744 CTTTCATTTTTTTACTCGTGATTTAATTTCGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * ** **
5400779 TTTTTCGTTCTCTGA--CATGTGATTTAGTTTCGGTGG
1 -TTTTCATTTTTTGACTCATG-G-TTTAATCCCGGTCA
* * * * * ** *
5400815 TTTTGACTTTCTGACTCATGATTTACTTTCAGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** *
5400849 GTTTTTGA-TTTTT-A-ACATGTGATTTAATATCGATCA
1 --TTTTCATTTTTTGACTCATG-G-TTTAATCCCGGTCA
* * ** **
5400885 TTTTCATTTCTCTGACTCATGATTTAATGACGGTTGT
1 TTTTCATTT-TTTGACTCATGGTTTAATCCCGG-TCA
* ** ** * *
5400922 TTTTCATTTTCTGACTTGTGACTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5400957 TTTTCATTTTTTGATTGACGGTTTAATCACGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * **
5400992 TTTTCATTTTTTCACTCATGGATTAATCTCGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
** * * * ***
5401027 TTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5401062 TTTTCA-TTTTTGATTTACGGTTTAATTCCC-ATCGC
1 TTTTCATTTTTTGACTCATGGTTTAA-TCCCGGTC-A
* *** * *
5401097 TTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** *** **
5401131 TTTTCATTTTTCTGATTCGTTATTTAATCCTTCTTG
1 TTTTCATTTTT-TGACTCATGGTTTAATCCCGGTCA
* *** **
5401167 TTTTCATTTTCTGA--CATGTGATTTAATTTTGGTTT
1 TTTTCATTTTTTGACTCATG-G-TTTAATCCCGGTCA
** * *
5401202 TTTTCATTATCTAAGACGC--GGTCTAATCCTC-GT-A
1 TTTTCATT-T-TTTGACTCATGGTTTAATCC-CGGTCA
* * * * *
5401236 TTTTCATTTTATGACTCGTGGTTTATTCTCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * * *
5401271 TTTTTAATTTTTAACTCATAGTTTAATCTCGATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * *** *
5401306 TTTTCATTTTTTGACCCATAGTTTAATCCTAATCGT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTC-A
* ** * **
5401342 TTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* ** *
5401377 TTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGG-TCA
** ** *
5401412 TTTTCATTTTTTGACTCATGACTTAAT-TAGGATTA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGG-TCA
* ***
5401447 TTTTCATTTTTTGACTCATGGCTTAATCATAGT-A
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* ** *
5401481 TTTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTT
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCGGTC-A
* **
5401518 TTTTCATTTTTTGACTCGTGGTTTAATCCCTATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* *** * ** *
5401553 TTTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCG
1 -TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* ** *
5401589 TTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * ** ** **
5401623 TTTTTATTTTTTGATTTGTGGTTTAATCTGGGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* **
5401658 TTTTCATTTTTTGACTCATGGTTTAATCCCCGTTG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5401693 TTTTCATCTTGTGACTCACGGTTTAATCGCTGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * *
5401728 TTTTCATTTTTTTGACT--TGCGATTTAATCTCAGTCG
1 TTTTCA-TTTTTTGACTCATG-G-TTTAATCCCGGTCA
* * ** * *
5401764 TTCTTCATTTTTTGACTCGTGTTTTAATCATGATCG
1 TT-TTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * *
5401800 TTTTCATTTCTTGACTCATGATTTAAACTCGATTGCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCG-GT-CA
* * * * **
5401837 --TTCAATTTCTGACTCACGGTTTGATCCCAATCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * *
5401870 TTTTTC-TTTTCCTGACTCATGGTTTAATCCTGCTCA
1 -TTTTCATTTT-TTGACTCATGGTTTAATCCCGGTCA
** *
5401906 TTTTTC-TTTTTCTGACTGGTGGTTTAATCCCGATCA
1 -TTTTCATTTTT-TGACTCATGGTTTAATCCCGGTCA
* * *** *
5401942 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCG
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
* * * * **
5401977 TTTCCATTTTCTGGCTCATGCTTTAATCTAGGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
** **
5402012 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTG
1 TTTTCATTTTT-TGACTC-ATGGTTTAATCCCGGTCA
* ** **
5402047 TTTTCATTTTCTGACTCATGGTTTAATCTAGGTTGT
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGG-TCA
* * ** *
5402083 TTTTCATTTTTTAACTCGTACTTTAATCCCAGTCA
1 TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
*
5402118 TTTTCATTTCTTGACTCATG
1 TTTTCATTTTTTGACTCATG
5402138 ATTCAAACTG
Statistics
Matches: 1845, Mismatches: 542, Indels: 188
0.72 0.21 0.07
Matches are distributed among these distances:
31 14 0.01
32 11 0.01
33 19 0.01
34 136 0.07
35 1136 0.62
36 489 0.27
37 33 0.02
38 6 0.00
39 1 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (35 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCCGGTCA
Found at i:5399703 original size:70 final size:70
Alignment explanation
Indices: 5399618--5406827 Score: 1026
Period size: 70 Copynumber: 102.5 Consensus size: 70
5399608 TCATTTTTCA
**
5399618 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTCTGACTCATGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
5399683 TCTCG
66 TCTCG
* ** * * * *
5399688 ATCGTTTTCATTTTTTGACTCATGGTTTAATCTTGATCTTTTTCATTTTTTGACTCGTGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
5399753 TCTCG
66 TCTCG
* * ** * * * *** * * * *
5399758 GTTGTTTTTGTTTTCTGACTCATGATTTAATTTTGGACATTTT--TTTT-T-ACTTACGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5399819 T-TCTT
66 TCTC-G
* *** * * * * * *
5399824 ATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTGATTT
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTT
*
5399888 AATCCTTG
64 AAT-CTCG
* * * * *** ** * *
5399896 -TTGTTTTCATTTTCTGACTTGTGATTTAATTTTGGTTGTTTTCATTATT-TAAGACGC--GATC
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATT-TTCT--GACTCATGATT
5399957 TAATCCCTCG
63 TAAT--CTCG
* * * * * * * * *
5399967 -T-ATTTTCATTTTATGACTCATGTTTTATTCTCAGTCATTTTCATTTTTTGA-TCCATGGTTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACT-CATGATTTA
5400029 ATC-CTG
65 ATCTC-G
* * * * * * ** *
5400035 ATCGTTTTTCTTTTTTTGACTGGTGGTTTAATACTGGTCGTTTTTAGTTTT-TGACTTGTGGTTT
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTT
*
5400099 AATCTGG
64 AATCTCG
* * * * * * * **
5400106 CTCATTTTCATTTTTTGACTCATGGCTTAAT-CAGGATTATTTTCATTTTTTGACTCATGGCTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTTA
*
5400170 ATCATAG
65 ATC-TCG
* * * ** * * * *
5400177 TAT--TTTTTATTTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTT
1 -ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTT
* *
5400240 AATCCCT
64 AATCTCG
* * ** * ** ** *
5400247 ATCATTTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCATTTTCA-TTTCTGACTTGTGGTTTA
1 ATC-GTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
*
5400311 ATC-CT
65 ATCTCG
* * * ** ** ** * *
5400316 AGTCATTTTTATTTTTTGATTTATGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTA
1 A-TCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
*
5400381 ATCCCCG
65 AT-CTCG
* * * ** * * * * * *
5400388 -TTGTTTTCATCTTGTGACTCACGGTTTAATCGCTGTCATTTTCATTTTTTTGACTTACGGTTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTTA
5400452 ATCTC-
65 ATCTCG
* * ** * * *
5400457 AGTTGTTCTTCATTTTTTGACTCGTGTTTTAATCATGATCGTTTTCA-TTTCTTGACTCGTGATT
1 A-TCGTT-TTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTC-TGACTCATGATT
* *
5400521 TAAACCCG
63 TAATCTCG
* ** * * * * * * ** * *
5400529 ATTGCATTCAATTTCTAACACATAGTTTAATCCCAATCATTTTTC-TTTTCCTGACTTATGGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTT-CTGACTCATGATTT
5400593 AATC-CTG
64 AATCTC-G
* * * * * * *
5400600 GTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGA-TTTCATTTTTTGAATCACGATTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTTA
*
5400664 ATCTTG
65 ATCTCG
* * * * * * *
5400670 ATC-TTTCTTATTTTCTAACTCGTAGTTTAATACGGGTCATTTTCATTTTTTGACTAACA-G-TT
1 ATCGTTT-TCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACT--CATGATT
5400732 TAATCTCG
63 TAATCTCG
** * * ** * * *
5400740 ATCACTTTCATTTTTTTACTCGTGATTTAATTTCGGTCATTTTTCGTTCTCTGACAT-GTGATTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGAC-TCATGATTT
* *
5400804 AGTTTCG
64 AATCTCG
* * * * * * * * ** * * * *
5400811 GTGGTTTTGACTTTCTGACTCATGATTTACTTTCAGT-AGTTTTTGATTTT-TAACAT-GTGATT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA--TTTTCATTTTCTGAC-TCATGATT
*
5400873 TAATATCG
63 TAATCTCG
* * * * ** ** ** *
5400881 ATCATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGACTT
1 ATCGTTTTCATTT-TTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTT
5400946 AATCTCG
64 AATCTCG
* * * * * * *
5400953 ATCATTTTCATTTTTTGA-TTGACGGTTTAATCACGATCATTTTCATTTTTTCACTCATGGA-TT
1 ATCGTTTTCATTTTTTGACTCG-TGGTTTAATCCCGGTCATTTTCATTTTCTGACTCAT-GATTT
5401016 AATCTCG
64 AATCTCG
* * ** * * *** * * * *
5401023 GTTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCATTTTCATTTT-TGATTTACGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5401087 T-TCCC
66 TCT-CG
* *** * * * * * *
5401092 ATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTCTGATTCGTTATTT
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTT
5401156 AATCCTTC-
64 AAT-C-TCG
* * * *** ** * * * *
5401164 -TTGTTTTCATTTTCTGACAT-GTGATTTAATTTTGGTTTTTTTCATTATCTAAGACGC--GGTC
1 ATCGTTTTCATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCATTTTCT--GACTCATGATT
5401225 TAATCCTCG
63 TAAT-CTCG
* * * * * * *
5401234 -T-ATTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTTAATTTT-TAACTCAT-AGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGA-TTT
5401295 AATCTCG
64 AATCTCG
* * * * *** * * * ** *
5401302 ATCATTTTCATTTTTTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTTA
5401367 ATC-CTG
65 ATCTC-G
* * * * * * *
5401373 GTTGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGACTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTTA
*
5401437 AT-TAGG
65 ATCT-CG
** * * *** * * *
5401443 ATTATTTTCATTTTTTGACTCATGGCTTAATCATAGT-ATTTTTCATTTTTTGACTCATGGTCTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGATTTA
5401507 ATCGT-G
65 ATC-TCG
* * ** * * ***
5401513 GTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGACGGGT-AGTT
1 ATC-GTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGA-TT
* *
5401577 TAATCCCA
63 TAATCTCG
* * * * * * ** *
5401585 ATCGTTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCATTTTTATTTTTTGATTTGTGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5401649 TCTGG
66 TCTCG
* * * * ** * * * *
5401654 GTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5401719 TCGCTG
66 TCTC-G
* * * * * * * * * *
5401725 -TCATTTTCATTTTTTTGACTTGCGATTTAATCTCAGTCGTTCTTCATTTTTTGACTCGTGTTTT
1 ATCGTTTTCA-TTTTTTGACTCGTGGTTTAATCCCGGTCATT-TTCATTTTCTGACTCATGATTT
5401789 AATCAT-G
64 AATC-TCG
* * * * * * * * *
5401796 ATCGTTTTCATTTCTTGACTCATGATTTAAACTCGATTGCA--TTCAATTTCTGACTCACGGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCG-GT-CATTTTCATTTTCTGACTCATGATTT
* * *
5401859 GATCCCA
64 AATCTCG
* * * * * * ** *
5401866 ATCATTTTTC-TTTTCCTGACTCATGGTTTAATCCTGCTCATTTTTCTTTTTCTGACTGGTGGTT
1 ATC-GTTTTCATTTT-TTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGATT
*
5401930 TAATCCCG
63 TAATCTCG
* * * * *** * * * *
5401938 ATCATTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCATGCTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5402003 TCTAG
66 TCTCG
* * * ** ** *
5402008 GTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCATTTTCTGACTCATGGTTT
1 ATCGTTTTCATTTTT-TGACTC-GTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
*
5402071 AATCTAG
64 AATCTCG
* * * ** * *
5402078 GTTGTTTTTCATTTTTTAACTCGTACTTTAATCCCAGTCATTTTCA-TTTCTTGACTCATGATTC
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTC-TGACTCATGATTT
*
5402142 AAACT-G
64 AATCTCG
* ** * * * * * * * * *
5402148 GTCGCGTTCATTTTCTAACCCGTGGTTTAGTCTCGATAATTTTTTTTTCATTTTTTGA-TC--GT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-----TTTTCATTTTCTGACTCATGA
*
5402210 TTTCAATTTCTG
61 TTT-AATCTC-G
* **** * ** * * * * * *
5402222 ACTCGTGGTTTAATCCGAAT-CCTTTTCGTTT--T-CTGACTCAATGTTT-AATCTC-GA-TCGT
1 A-TCGT--TTTCAT-TTTTTGACTCGTGGTTTAATCCCG-GTC-AT-TTTCATTTTCTGACTCAT
** ** *
5402280 TTTCCTTTTTCTAGCT
59 GAT--TTAATCT--CG
* * * * ** * *
5402296 AGTGGTTTAATC-TCGGTCATTTTTA-T--T-TTTTGACTCATGGTTTAATCCTTATCGTTTTCA
1 A-TCGTTT--TCAT---T--TTTTGACTCGTGGTTT-AATCCCGG--TCAT--TT-TCATTTTC-
5402356 TTTTTTGACT-ACTGATTTAATC-CTG
51 -----TGACTCA-TGATTTAATCTC-G
* * * * ** * * *
5402381 GTCATTTT--TTGTTTCTGACTCGTGATTTAATCTCAATCCTTGTCATTTTTTGACTCATGATTT
1 ATCGTTTTCATT-TTT-TGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
*
5402444 AATCCCG
64 AATCTCG
* * * * * * * * * ** * * ** *
5402451 ATTGTTTTCATCTCTTAACTTGCGATTTAAACCCGATTGTATTCATTTTTTGACTTGTGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
5402516 TC-CTG
66 TCTC-G
* * * * * * * **
5402521 GTCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGAATCCCGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5402586 TCTTG
66 TCTCG
* * * * * * * *
5402591 ATCCTTTTTATTTTCTAACCCGTAGTTTAAT-ACGAGTCATTTTCA-TTTCTTGACTCA-CAGTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCG-GTCATTTTCATTTTC-TGACTCATGA-TT
5402653 TAATCTCG
63 TAATCTCG
* * * ** * * * *
5402661 ATCGCTTTCATTTTTTTACTCGTGATTTAATTTCGGTCACTTTTCGTTCTCTAACAT-GTGATTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGAC-TCATGATTT
* *
5402725 AGTTTCG
64 AATCTCG
* * * * * * * ** * * *
5402732 GTGGTTTTGACTTTTTGACTCATGATTTACTTTCAGT-AGTTTTCGATTTT-TAACAT-GTGATT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTC-ATTTTCTGAC-TCATGATT
*
5402794 TAATATCG
63 TAATCTCG
* * * * * ** ** **
5402802 ATCATTTTCATTTCTCTGATTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTT
1 ATCGTTTTCATTT-TTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTT
5402867 AATCTCG
64 AATCTCG
* * * ** * * * *
5402874 ATCTTTTTCATTTTTTGA-TTGACGGTTTAATCATGATCATTTTCATTTTTTCACTCATGGTTTA
1 ATCGTTTTCATTTTTTGACTCG-TGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
5402938 ATCTCG
65 ATCTCG
* * ** * * * *** * * * *
5402944 GTTGTTTTTGTTTTCTGACTCTTGATTTAATTTTGGTCATTTTCATTTT-TGATTTACGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5403008 T-TCCC
66 TCT-CG
* *** * * * * * * *
5403013 ATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCATTTTCATTTTTTTGATTCGTTATTT
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTT
*
5403077 AATCCTTG
64 AAT-CTCG
* * * * *** ** * * * *
5403085 -TTGTTTTCATTTTCTAACAT-GTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTC
1 ATCGTTTTCATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCATTTTCT--GACTCATGATT
5403146 TAATCCCTCG
63 TAAT--CTCG
* * * * * * *
5403156 -T-ATTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTTAATTTT-TAACTCAT-AGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGA-TTT
5403217 AATCTCG
64 AATCTCG
* * * * * * *** * * * ** *
5403224 ATCATTTCCATTTTCTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTTA
5403289 ATC-CTG
65 ATCTC-G
* * * * * * **
5403295 GTTGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGGCTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTTA
**
5403359 ATCAGG
65 ATCTCG
** * * *** * * *
5403365 ATTATTTTCATTTTTTGACTCATGGCTTAATCATAGT-ATTTTTCATTTTTTGACTCATGGTCTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGATTTA
5403429 ATCGT-G
65 ATC-TCG
* * ** ***
5403435 GTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTC-TTTTCTTGACGGGT-AGT
1 AT-CGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTC-TGACTCATGA-T
* *
5403498 TTAATCCCA
62 TTAATCTCG
* * * * * * ** *
5403507 ATCGTTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCATTTTTATTTTTTGATTTGTGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
* *
5403571 TTTGG
66 TCTCG
* * * * ** * * * *
5403576 GTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5403641 TCGCTG
66 TCTC-G
* * * * * * * * *
5403647 -TCATTTTCATTTTTTTGACTTGCGGTTTAATCTCAGTCGTTCTTCATTTTTTGACTCGTGTTTT
1 ATCGTTTTCA-TTTTTTGACTCGTGGTTTAATCCCGGTCATT-TTCATTTTCTGACTCATGATTT
5403711 AATCAT-G
64 AATC-TCG
* * * * * *
5403718 ATCGTTTTCATTTCTTGACTCGTGATTTAAACCCGATTGCA--TTCAATTTT-TGATTCACGATT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCG-GT-CATTTTC-ATTTTCTGACTCATGATT
* * *
5403780 TGATCCCA
63 TAATCTCG
* * * * * * * * ** *
5403788 ATCATTTT-TTTTTCTTGACTCATGATTTAATCCTGCTCATTTTTCTTTTTCCGACTGGTGGTTT
1 ATCGTTTTCATTTT-TTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTTCTGACTCATGATTT
*
5403852 AATCCCG
64 AATCTCG
* * * * *** * * * *
5403859 ATCATTTCCATTTTCTGACTCATGGTTTAATCTTAGTCATTTCCATTTTCTGGCTCGTGCTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5403924 TCTAG
66 TCTCG
* * * ** ** * * *
5403929 GTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTGACTCGTGGTTT
1 ATCGTTTTCATTTTT-TGACTC-GTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCAT-GATT
*
5403992 TAATCTAG
63 TAATCTCG
* * * ** ** * *
5404000 GTTGTTTTTCATTTTTTAACTCGTACTTTAATCCTAGTCGTTTTCA-TTTCTTGACTCATGATTC
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTC-TGACTCATGATTT
*
5404064 AAACT-G
64 AATCTCG
* ** * * * * *
5404070 GTCGCGTTCATTTTCTAACTCGTGGTTTAGTCTCGATC-TTTT--TTTT-T---TCAT--TTT--
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
5404124 T-T-G
66 TCTCG
* * * *
5404127 ATCGTTTTCAATTTTTGACTCGTGGTTTAAT-CCGAATCCTTTTCGTTTTCTGACTCAATG-TTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCG-GTCATTTTCATTTTCTGACTC-ATGATTT
5404190 AATCTCG
64 AATCTCG
* * * * * *
5404197 ATCGTTTTCCTTTTTCT-AGCTAGTGGTTTAATCTCGGTCGTTTTCATTTTTTGACTCATGGTTT
1 ATCGTTTTCATTTTT-TGA-CTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
*
5404261 AATC-CTT
64 AATCTC-G
* ** *
5404268 ATCGTTTTCATTTTTTGACTAC-TGATTTAATCCTAGTCATTTT--TTAATTCTGACTCGTGATT
1 ATCGTTTTCATTTTTTGACT-CGTGGTTTAATCCCGGTCATTTTCATT--TTCTGACTCATGATT
*
5404330 TAATCTCA
63 TAATCTCG
* * * * ** * **
5404338 ATCGTTGTCATTTTTTGACTCATGATTTAATCCCGATTGTTTTCA-TTTCTTAACTCGCGATTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTC-TGACTCATGATTTA
* *
5404402 AACCCG
65 ATCTCG
* * * * * * * * *
5404408 ATTGTATTCATTTTCTGACTTGTGGTTTAATCCTGGTCGTTTTCATTTTTTGACTTATGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5404473 TTTCG
66 TCTCG
* * * ** * * *
5404478 ATCGTTTTCATTTTTCGAATCGTGATTTAATCTTGATC-TTTCTTATTTTCTAACTCAT-AGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTT-TCATTTTCTGACTCATGA-TTT
***
5404541 AATAGGG
64 AATCTCG
* ** **** * * ** * * *
5404548 GTTATTTTCATTTTTTGACTCACAATTTAATCTCGATCGCTTTCATTTTTTTACTCGTGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
*
5404613 TTTCG
66 TCTCG
* * * * * * ** ** * * *
5404618 ATCATTTTTCGTTCTCTGACAT-GTGATTTAGTTTCGGTGGTTTTGACTTTCTGACTCACGATTT
1 ATC-GTTTTCATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
* *
5404682 ACTTTC-
64 AATCTCG
* * * * ** *
5404688 AGTAGTTTTCGA-TTTTTAACAT-TTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGAT
1 A-TCGTTTTC-ATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCATTT-TCTGACTCATGAT
**
5404751 TTAATGAC-
62 TTAATCTCG
* * * * * * * * * *
5404759 AGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTCATTTTTTGATTGACGATTT
1 A-TCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
5404824 AATCAT-G
64 AATC-TCG
* * * * * ** ** *
5404831 ATCATTTTCATTTTTTCACTCATGGTTTAATCTCGATTGTTTTTGTTTTCTGACTCGTGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
* *
5404896 TTTTG
66 TCTCG
* * * *** * * * **
5404901 GTCATTTTCA-TTTTTGATTTACGGTTTAATTCCC-ATCGCTTTT-GTTCCCTGACTCATGATTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAA-TCCCGGTC-ATTTTCATTTTCTGACTCATGATTT
5404963 AATC-CTG
64 AATCTC-G
* * * ** *** ** *
5404970 GTCATTTTCATTTTTTTGATTCGTTATTTAATCCTTCTTGTTTTCATTTTCTGACAT-GTGATTT
1 ATCGTTTTCA-TTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGAC-TCATGATTT
* *
5405034 AATTTTG
64 AATCTCG
* * * * * ** * * * * *
5405041 GTTGTTTTCATTATCTAAGACGCGGTCTAATCCTTC-GT-ATTTTCATTTTATGACTCGTGGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCC--CGGTCATTTTCATTTTCTGACTCATGATTT
*
5405104 ATTCTC-
64 AATCTCG
* * * * * * * * * *
5405110 AGTCATTTTTAATATTTAACTCATAGTTTAATCTCGATCATTTTCATTTTTTGAC-CTAT-AGTT
1 A-TCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTC-ATGA-TT
*
5405173 TAATC-CTA
63 TAATCTC-G
* * * ** * * *** *
5405181 ATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGGGGTTTA
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
*
5405246 ATCTGG
65 ATCTCG
* * * * * * * **
5405252 CTCATTTTCATTTTTTGACTCATGGCTTAAT-CAGGATTATTTTCATTTTTTGACTCATGGCTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTTA
*
5405316 ATCATAG
65 ATC-TCG
* * ** * * * *
5405323 TAT--TTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTT
1 -ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTT
5405386 AATC-C-
64 AATCTCG
* * * * ** * * * * *
5405391 --C--TTTCATTTTTTTAATCGCGATTTAATCTTGATC-TTTCTTATTTCCTAACTCGT-AGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTT-TCATTTTCTGACTCATGA-TTT
*
5405450 AATAC-GG
64 AAT-CTCG
* * * *** * * * * * *
5405457 GTCATTTTCATTTCTTGACTCACAGTTTAATCTCGATCGCTTTT-ATTTTTTTACTCGTGATTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTTA
*
5405521 ATTTCG
65 ATCTCG
* * * * * * * ** ** *
5405527 GTCATTTTTCGTTCTCTGACAT-GTGATTTAGTTTCGGTGGTTTT-GTCTTTCTGACTCATGATT
1 ATC-GTTTTCATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCAT-TTTCTGACTCATGATT
* *
5405590 TACTTTC-
63 TAATCTCG
* * * ** *
5405597 AGTAGTTTTCGA-TTTTTAACGT-GTGATTTAATATCGATCATTTTCATTTCTCTGACTCATGAT
1 A-TCGTTTTC-ATTTTTTGAC-TCGTGGTTTAATCCCGGTCATTTTCATTT-TCTGACTCATGAT
**
5405660 TTAATGACG
62 TTAATCTCG
* * * * * * * * * * *
5405669 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTTTCATTTTTTGATTGATGGTTTA
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
5405734 ATCAT--
65 ATC-TCG
* * * * ** **
5405739 ATCATTTTCATTTTTTCACTCATGGTTTAATCTCGGTTGTTTTTGTTTTCTGACTCATGATTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT-A
*
5405804 AT-TTG
65 ATCTCG
* * * * *** * * * **
5405809 GTCATTTTCATTTTAT-ATTTACGGTTTAATTCCC-ATCGCTTTT-GTTCCCTGACTCATGATTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAA-TCCCGGTC-ATTTTCATTTTCTGACTCATGATTT
5405871 AATC-CTG
64 AATCTC-G
* * * ** ** ** *
5405878 GTCATTTTCATTTTTTTGATTCGTTATTTAATCCTTGTTGTTTTCATTTTCTGACAT-GTGATTT
1 ATCGTTTTCA-TTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGAC-TCATGATTT
* *
5405942 AATTTTG
64 AATCTCG
* * * * * ** * * * * *
5405949 GTTGTTTTCATTATCTAAGACGCGGTCTAATCCC--TCCTATTTTCATTTTATGACTCGTGGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGT-C-ATTTTCATTTTCTGACTCATGATTT
*
5406012 ATTCTC-
64 AATCTCG
* * * * * * * *
5406018 AGTCATTTTTAATTTTT-AGCTCATAGTTTAATCTCGATCATTTTCATTTTCTGACCCAT-AGTT
1 A-TCGTTTTCATTTTTTGA-CTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGA-TT
*
5406081 TAATC-CTA
63 TAATCTC-G
* * * ** * * ** *
5406089 ATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGTGGTTTA
1 ATCG-TTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
*
5406154 ATCTGG
65 ATCTCG
* * * * * * * **
5406160 CTCATTTTCATTTTTTGACTCATGGCTTAAT-CAGGATTATTTTCATTTTTTGACTCATGGCTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGG-TCATTTTCATTTTCTGACTCATGATTTA
*
5406224 ATCATAG
65 ATC-TCG
* * ** * * * *
5406231 TAT--TTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTT
1 -ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTC-ATTTTCATTTTCTGACTCATGATTT
* *
5406294 AATCCCT
64 AATCTCG
* ** * ** * ** *
5406301 ATCATTTTTC-TTTTCTTGACGGGTAGTTTAATCCCAATCGTTTTCATTTT-TGACTTGTGGTTT
1 ATC-GTTTTCATTTT-TTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTT
5406364 AATC-CTG
64 AATCTC-G
* * * * * ** ** * *
5406371 GTCATTTTTATTTTTTGATTTGTGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
* *
5406436 TCCCC
66 TCTCG
* * * ** * * * *** *
5406441 ATTGTTTTCATCTTGTGACTCACGGTTTAATCGCTGTCATTTTCATTTTTTTGACTTGCGGTTTA
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCA-TTTTCTGACTCATGATTTA
*
5406506 ATCTCA
65 ATCTCG
* ** * *
5406512 ATCGTTCTTCATTTTTTGACTCGTGTTTTAATCATGATCGTTTTCA-TTTCTTGACT-AGTGATT
1 ATCGTT-TTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTC-TGACTCA-TGATT
* *
5406575 TAAACCCG
63 TAATCTCG
* * * * ** * * ** *
5406583 ATTGTATTCAATTTCTGACTCACGATTTGATCCCAATCATTTTTC-TTTTCCTGACTCATGGTTT
1 ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCA-TTTTCATTTT-CTGACTCATGATTT
*
5406647 AATCCTGCTT
64 AAT-CT-C-G
*** * * *
5406657 AT--TTTTC-TTTTTCTGAAGGGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTA
1 ATCGTTTTCATTTTT-TGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTA
*
5406719 ATCT-T
65 ATCTCG
* * * * ** *
5406724 AGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTAGGTCATTTTCTTTTTCTGACTCAATG-TTT
1 A-TCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTC-ATGATTT
*
5406788 AATC-CC
64 AATCTCG
* * *
5406794 ACTTGTTTTCGTTTTCTGACTCGTGGTTTTAATC
1 A-TCGTTTTCATTTTTTGACTCGTGG-TTTAATC
5406828 TAGGTTGTTT
Statistics
Matches: 5172, Mismatches: 1552, Indels: 831
0.68 0.21 0.11
Matches are distributed among these distances:
56 2 0.00
57 29 0.01
58 4 0.00
60 6 0.00
61 1 0.00
62 4 0.00
63 3 0.00
64 20 0.00
65 31 0.01
66 44 0.01
67 14 0.00
68 41 0.01
69 485 0.09
70 2397 0.46
71 1482 0.29
72 494 0.10
73 16 0.00
74 24 0.00
75 10 0.00
76 7 0.00
77 17 0.00
78 8 0.00
79 6 0.00
80 1 0.00
81 8 0.00
82 4 0.00
84 5 0.00
87 4 0.00
88 2 0.00
89 3 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (70 bp):
ATCGTTTTCATTTTTTGACTCGTGGTTTAATCCCGGTCATTTTCATTTTCTGACTCATGATTTAA
TCTCG
Found at i:5400452 original size:211 final size:212
Alignment explanation
Indices: 5400000--5400454 Score: 528
Period size: 211 Copynumber: 2.2 Consensus size: 212
5399990 TTTATTCTCA
* * *
5400000 GTCATTTTCATTTTTTGA-TCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTGGTGGTT
1 GTCATTTTCATTTTTTGACT-CATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACGGGTAGTT
*** * * * *
5400063 TAATACTGGTCGTTTTTAGTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCA
65 TAATACCAATCATTTTCAGTTTCTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTTTGACTCA
* * * *
5400128 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTTATTTTTTG
130 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTG
*
5400193 ACTCATGGTCTAATCGTG
195 ACTCACGGTCTAATCGTG
* *
5400211 GTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCATTTTTCTTTTTTTGACGGGTAGTT
1 GTC-ATTTTCATTTTTTGACTCATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACGGGTAGTT
* * * *
5400275 TAATCCCAATCATTTTCA-TTTCTGACTTGTGGTTTAATCCTAG-TCATTTTTATTTTTTGATTT
65 TAATACCAATCATTTTCAGTTTCTGACTTGTGGTTTAAT-CTAGCTCATTTTCATTTTTTGACTC
* * * * * * *
5400338 ATGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGT-TGTTTTCATCTTG
129 ATGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTAT-TTTTCATCTTG
*
5400402 TGACTCACGGTTTAATCGCT-
193 TGACTCACGGTCTAATCG-TG
* *
5400422 GTCATTTTCATTTTTTTGACTTACGGTTTAATC
1 GTCATTTTCA-TTTTTTGACTCATGGTTTAATC
5400455 TCAGTTGTTC
Statistics
Matches: 204, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
210 7 0.03
211 128 0.63
212 65 0.32
213 4 0.02
ACGTcount: A:0.17, C:0.15, G:0.16, T:0.52
Consensus pattern (212 bp):
GTCATTTTCATTTTTTGACTCATGGTTTAATCCCTGATCATTTTTCTTTTTTTGACGGGTAGTTT
AATACCAATCATTTTCAGTTTCTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTTTGACTCAT
GGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGA
CTCACGGTCTAATCGTG
Found at i:5400490 original size:211 final size:212
Alignment explanation
Indices: 5400003--5400523 Score: 472
Period size: 211 Copynumber: 2.5 Consensus size: 212
5399993 ATTCTCAGTC
* * * * *
5400003 ATTTTCATTTTTTGA-TCCATGGTTTAAT-CCTGATCGTTTTTCTTTTTTTGACTG-GTGGTTTA
1 ATTTTCATTTTTTGACT-CACGGTTTAATCCCT-ATCATTCTTCATTTTTTGAC-GCGTAGTTTA
** * * *
5400065 AT-ACTGGTCGTTTTTAGTTT-TTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCA
63 ATCAC-AATCATTTTCA-TTTCTTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTTTGACTCA
* * * *
5400128 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTTATTTTTTG
126 TGGCTTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTG
*
5400193 ACTCATGGTCTAATCGTGGTCT
191 ACTCACGGTCTAATCGTGGTCT
* ** * * *
5400215 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGACGGGTAGTTTAATC
1 ATTTTCATTTTTTGACTCACGGTTTAATCCCTATCATTCTTCATTTTTTGACGCGTAGTTTAATC
* * * * *
5400280 CCAATCATTTTCATTTC-TGACTTGTGGTTTAATCCTAG-TCATTTTTATTTTTTGATTTATGGT
66 ACAATCATTTTCATTTCTTGACTTGTGGTTTAAT-CTAGCTCATTTTCATTTTTTGACTCATGGC
* * * * * *
5400343 TTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGT-TGTTTTCATCTTGTGACT
130 TTAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTAT-TTTTCATCTTGTGACT
*
5400407 CACGGTTTAATCGCT-GTC-
194 CACGGTCTAATCG-TGGTCT
* * ** *
5400425 ATTTTCATTTTTTTGACTTACGGTTTAATCTC-AGTTGTTCTTCATTTTTTGACTCGT-GTTTTA
1 ATTTTCA-TTTTTTGACTCACGGTTTAATCCCTA-TCATTCTTCATTTTTTGACGCGTAG-TTTA
** * * *
5400488 ATCATGATCGTTTTCATTTCTTGACTCGTGATTTAA
63 ATCACAATCATTTTCATTTCTTGACTTGTGGTTTAA
5400524 ACCCGATTGC
Statistics
Matches: 254, Mismatches: 43, Indels: 24
0.79 0.13 0.07
Matches are distributed among these distances:
210 9 0.04
211 164 0.65
212 76 0.30
213 5 0.02
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.52
Consensus pattern (212 bp):
ATTTTCATTTTTTGACTCACGGTTTAATCCCTATCATTCTTCATTTTTTGACGCGTAGTTTAATC
ACAATCATTTTCATTTCTTGACTTGTGGTTTAATCTAGCTCATTTTCATTTTTTGACTCATGGCT
TAATCAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCA
CGGTCTAATCGTGGTCT
Found at i:5400505 original size:142 final size:142
Alignment explanation
Indices: 5400271--5400666 Score: 385
Period size: 142 Copynumber: 2.8 Consensus size: 142
5400261 TTTGACGGGT
* ** * *
5400271 AGTTTAATCCCAATCA-TTTTCATTT-CTGACTTGTGGTTTAATCCTAGTCATTTTTATTTTTTG
1 AGTTTAATCCCAATCATTTTTCTTTTCCTGACTTACGGTTTAATCCTAGTCGTTTTCATTTTTTG
* * * * * * **
5400334 ATTTATGGTTTAATCTGGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCG-TTGTTTTC-A
66 ACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGATTTAATCCCCGATTGCATTCAA
* * *
5400397 TCTTGTGACTCAC
131 T-TTCTAACACAC
* * ** ** *
5400410 GGTTTAATCGCTGTCA-TTTTCATTTTTTTGACTTACGGTTTAAT-CTCAGTTGTTCTTCATTTT
1 AGTTTAATCCCAATCATTTTTC-TTTTCCTGACTTACGGTTTAATCCT-AGTCGTT-TTCATTTT
* * * * *
5400473 TTGACTCGTGTTTTAATCAT-GATCGTTTTCATTTCTTGACTCGTGATTTAA-ACCCGATTGCAT
63 TTGACTCATGGTTTAATC-TCGATCGTTTTCATTTTTTGACTCATGATTTAATCCCCGATTGCAT
*
5400536 TCAATTTCTAACACAT
127 TCAATTTCTAACACAC
* *
5400552 AGTTTAATCCCAATCATTTTTCTTTTCCTGACTTATGGTTTAATCCTGGTCGTTTTCATTTTTTG
1 AGTTTAATCCCAATCATTTTTCTTTTCCTGACTTACGGTTTAATCCTAGTCGTTTTCATTTTTTG
* * *
5400617 ACTCATGGTTTAATCTCGATCGATTTCATTTTTTGAATCACGATTTAATC
66 ACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGATTTAATC
5400667 TTGATCTTTC
Statistics
Matches: 202, Mismatches: 44, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
139 17 0.08
140 6 0.03
141 73 0.36
142 96 0.48
143 10 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (142 bp):
AGTTTAATCCCAATCATTTTTCTTTTCCTGACTTACGGTTTAATCCTAGTCGTTTTCATTTTTTG
ACTCATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGATTTAATCCCCGATTGCATTCAA
TTTCTAACACAC
Found at i:5400512 original size:71 final size:70
Alignment explanation
Indices: 5400355--5400514 Score: 178
Period size: 71 Copynumber: 2.3 Consensus size: 70
5400345 AATCTGGGTT
* *
5400355 GTTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACGGTTTAATCG
1 GTTTTCATTTTTTGACTCACGGTTTAATCCCAGTTGTTTTCATCTTGTGACTCACGGTTTAATCG
*
5400420 CTGTC
66 ATGTC
* * * * * ** *
5400425 ATTTTCATTTTTTTGACTTACGGTTTAATCTCAGTTGTTCTTCATTTTTTGACTCGTGTTTTAAT
1 GTTTTCA-TTTTTTGACTCACGGTTTAATCCCAGTTGTT-TTCATCTTGTGACTCACGGTTTAAT
5400490 C-ATGATC
64 CGATG-TC
*
5400497 GTTTTCATTTCTTGACTC
1 GTTTTCATTTTTTGACTC
5400515 GTGATTTAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
70 6 0.08
71 38 0.52
72 29 0.40
ACGTcount: A:0.16, C:0.19, G:0.14, T:0.51
Consensus pattern (70 bp):
GTTTTCATTTTTTGACTCACGGTTTAATCCCAGTTGTTTTCATCTTGTGACTCACGGTTTAATCG
ATGTC
Found at i:5400900 original size:71 final size:72
Alignment explanation
Indices: 5400824--5400965 Score: 187
Period size: 71 Copynumber: 2.0 Consensus size: 72
5400814 GTTTTGACTT
* ** * *
5400824 TCTGACTCATGATTTACTTTCAGTAGTTTTTGATTTT-TAACATGTGATTTAATATCGATCATTT
1 TCTGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACATGTGACTTAATATCGATCATTT
5400888 TCATTTC
66 TCATTTC
* * * * *
5400895 TCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGACTTAATCTCGATCATTT
1 TCTGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACATGTGACTTAATATCGATCATTT
5400960 TCATTT
66 TCATTT
5400966 TTTGATTGAC
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
71 31 0.52
72 29 0.48
ACGTcount: A:0.22, C:0.15, G:0.13, T:0.50
Consensus pattern (72 bp):
TCTGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACATGTGACTTAATATCGATCATTT
TCATTTC
Found at i:5401113 original size:104 final size:106
Alignment explanation
Indices: 5400881--5401123 Score: 262
Period size: 104 Copynumber: 2.3 Consensus size: 106
5400871 TTTAATATCG
* * *
5400881 ATCATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGACTT
1 ATCATTTTCA-TTCCCTGACTCATGATTTAATCACGGTTGTTTTTCATTTTCTGACTCGTGACTT
*
5400946 AATCTCGATCATTTTCATTTTTTGATTGACGGTTTAATCACG
65 AATCTCGATCATTTTCATTTTTTGATTGACGGTTTAATCACC
*** * * * *
5400988 ATCATTTTCATTTTTTCACTCATGGA-TTAATCTCGGTTGTTTTT-GTTTTCTGACTCGTGATTT
1 ATCATTTTCATTCCCTGACTCAT-GATTTAATCACGGTTGTTTTTCATTTTCTGACTCGTGACTT
* * * *
5401051 AATTTTGGTCATTTTCA-TTTTTGATTTACGGTTTAATTC-CC
65 AATCTCGATCATTTTCATTTTTTGATTGACGGTTTAA-TCACC
* *
5401092 ATCGCTTTT-GTTCCCTGACTCATGATTTAATC
1 ATC-ATTTTCATTCCCTGACTCATGATTTAATC
5401124 CTGGTCATTT
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
103 2 0.02
104 37 0.33
105 36 0.32
106 26 0.23
107 12 0.11
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (106 bp):
ATCATTTTCATTCCCTGACTCATGATTTAATCACGGTTGTTTTTCATTTTCTGACTCGTGACTTA
ATCTCGATCATTTTCATTTTTTGATTGACGGTTTAATCACC
Found at i:5401388 original size:106 final size:103
Alignment explanation
Indices: 5401278--5401969 Score: 286
Period size: 106 Copynumber: 6.5 Consensus size: 103
5401268 TCATTTTTAA
* * *
5401278 TTTTTAACTCATAGTTTAATCTCGATCATTTTCATTTTTTGACCCATAGTTTAATCCTAATCGTT
1 TTTTTGACTCATGGTTTAATCT-GATCATTTTCATTTTTTGACTCAT-GTTTAATCCTAATC-TT
*
5401343 TTTCTTTTTTTGACTGGTGGTTTAATCCTGGT-TGTTTCCAT
63 TTTCTTTTTTTGACTGGTGGTTTAATCCTAGTAT-TTTCCAT
** * *
5401384 TTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGACTTAAT--TAGGAT-T
1 TTTTTGACTCATGGTTTAATCT-GATCATTTTCATTTTTTGACTCATG-TTTAATCCTA--ATCT
* ** * * *
5401446 ATTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTCAT
62 -TTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTATTTTCCAT
* * * *
5401489 TTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCT-ATCA
1 TTTTTGACTCATGGTTTAATC-TGATC-ATTTTCATTTTTTGACTCAT-GTTTAAT-CCTAATC-
* * * * *
5401553 TTTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCGTTTT-CA-
61 TTTTTCTTTTTTTGACTGGTGGTTTAATCCTAGT-ATTTTCCAT
* ** * * * ** **
5401595 TTTCTGACTTGTGGTTTAATCCTGGTCATTTTTATTTTTTGATTTGTGGTTTAAT-CTGGGT-TG
1 TTTTTGACTCATGGTTTAAT-CTGATCATTTTCATTTTTTGACTCAT-GTTTAATCCT-AATCT-
* ** ** *
5401658 TTTTCATTTTTTGACTCATGGTTTAATCCCCGT-TGTTTTCAT
62 TTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTAT-TTTCCAT
* * * *** *
5401700 CTTGTGACTCACGGTTTAATCGCTG-TCATTTTCATTTTTTTGACTTGCGATTTAAT-CTCAGTC
1 TTTTTGACTCATGGTTTAAT--CTGATCATTTTCA-TTTTTTGACTCATG-TTTAATCCT-AATC
* * * * * *
5401763 GTTCTTCATTTTTTGACTCGTGTTTTAATCAT-G-ATCGTTTTCAT
61 -TTTTTCTTTTTTTGACTGGTGGTTTAATCCTAGTAT--TTTCCAT
* * * * * * * *
5401807 TTCTTGACTCATGATTTAAACTCGATTGCA--TTCAATTTCTGACTCACGGTTTGATCCCAATCA
1 TTTTTGACTCATGGTTTAATCT-GA-T-CATTTTCATTTTTTGACTCA-TGTTTAATCCTAATC-
** ** *
5401870 TTTTTCTTTTCCTGACTCATGGTTTAATCCT-GCTCATTTTTC-T
61 TTTTTCTTTTTTTGACTGGTGGTTTAATCCTAG-T-ATTTTCCAT
** * * *
5401913 TTTTCTGACTGGTGGTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATC
1 TTTT-TGACTCATGGTTTAAT-CTGATCATTTTCATTTTTTGACTCAT-GTTTAATC
5401970 TTAGTCGTTT
Statistics
Matches: 448, Mismatches: 96, Indels: 83
0.71 0.15 0.13
Matches are distributed among these distances:
102 1 0.00
103 6 0.01
104 31 0.07
105 108 0.24
106 168 0.38
107 121 0.27
108 8 0.02
109 5 0.01
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (103 bp):
TTTTTGACTCATGGTTTAATCTGATCATTTTCATTTTTTGACTCATGTTTAATCCTAATCTTTTT
CTTTTTTTGACTGGTGGTTTAATCCTAGTATTTTCCAT
Found at i:5401398 original size:141 final size:141
Alignment explanation
Indices: 5399969--5410397 Score: 740
Period size: 141 Copynumber: 73.5 Consensus size: 141
5399959 ATCCCTCGTA
* * * * * *
5399969 TTTTCATTTTATGACTCATGTTTTATTCTCAGTCATTTTCATTTTTTGA-TCCATGGTTTAATC-
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACT-CATAGTTTAATCT
* * ** * * * * *
5400032 CTGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATACTGGTCGTTTTT-AGTTTTTGACTTGTGG
65 C-GATC-ATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGG
**
5400096 TTTAAT-CTGGCTCA
128 TTTAATCCTGG-TTG
* * * * * *
5400110 TTTTCATTTTTTGACTCATGGCTTAA--TCAGGATTATTTTCATTTTTTGACTCATGGCTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCA-G-TCATTTTTATTTTTTGACTCATAGTTTAATC
* * * * * *
5400173 ATAG-T-ATTTTTTATTTTTTGACTCATGGTCTAATCGTGGTCTTTTTTCATTTTTTGACTCGTG
64 -TCGATCA-TTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTG
*
5400236 GTTTAATCCCT-ATCAT-
127 GTTTAAT-CCTGGT--TG
* ** * * * * * ** *
5400252 TTTTCTTTTTTTGACGGGTAGTTTAATCCCAATCATTTTCA-TTTCTGACTTGTGGTTTAATC-C
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
* * * * * *
5400315 TAGTCATTTTTATTTTTTGATTTATGGTTTAAT-CTGGGT--TGTTTTCATTTTTTGACTCATGG
66 GA-TCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCAT-TTTTCATTTTTTGACTCGTGG
**
5400377 TTTAATCCCCGTTG
128 TTTAATCCTGGTTG
* * ** * * * * **
5400391 TTTTCATCTTGTGACTCACGGTTTAATCGCTGTCATTTTCATTTTTTTGACTTACGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTA-TTTTTTGACTCATAGTTTAATCT
** * * * * *
5400456 C-AGTTGTTCTTCATTTTTTGACTCGTGTTTTAATCAT-GATC-GTTTTCATTTCTTGACTCGTG
65 CGA-TCATT-TTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGTG
* * * *
5400518 ATTTAAACCCGATTG
127 GTTTAATCCTGGTTG
** * * * * * * * * * * * *
5400533 CATTCAATTTCTAACACATAGTTTAATCCCAATCATTTTTCTTTTCCTGACTTATGGTTTAATC-
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTT-TTGACTCATAGTTTAATCT
* * * * **
5400597 CTGGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGATCGA--TTTCATTTTTTGAATCACG
65 C-GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TC-ATTTTTCATTTTTTGACTCGTG
* * *
5400659 ATTTAATCTTGATCT-
127 GTTTAATCCTGGT-TG
* * * ** * * *
5400674 TTCTT-ATTTTCTAACTCGTAGTTTAATAC-GGGTCATTTTCATTTTTTGACTAACAGTTTAATC
1 TT-TTCATTTTTTGACTCGTGGTTTAAT-CTCAGTCATTTTTATTTTTTGACTCATAGTTTAATC
* * * * * * * * *
5400737 TCGATCACTTTCATTTTTTTACTCGTGATTTAAT-TTCGGTCATTTTTCGTTCTCTGACAT-GTG
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGAC-TCGTG
* * * *
5400800 ATTTAGT-TTCGGTGG
127 GTTTAATCCT-GGTTG
* * * * * * * * *
5400815 TTTTGACTTTCTGACTCATGATTTACTTTCAGT-AGTTTTTGA-TTTTT-A-ACATGTGATTTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCA-TTTTT-ATTTTTTGACTCAT-AG-TTTAA
* * * * * ** * *
5400876 TATCGATCATTTTCATTTCTCTGACTCATGATTTAATGAC-GGTTGTTTTTCATTTTCTGACTTG
62 TCTCGATCATTTTCATTT-TTTGACTCATGGTTTAAT-CCTAGTCATTTTTCATTTTTTGACTCG
** * **
5400940 TGACTTAAT-CTCGATCA
125 TGGTTTAATCCT-GGTTG
* * * * * * *
5400957 TTTTCATTTTTTGA-TTGACGGTTTAATCAC-GATCATTTTCATTTTTTCACTCATGGATTAATC
1 TTTTCATTTTTTGACTCG-TGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAGTTTAATC
* ** ** * * * ** * * ***
5401020 TCGGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCA-TTTTCA-TTTTTGATTTACGGT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
** *
5401083 TTAATTCC-CATCG
129 TTAA-TCCTGGTTG
* *** * * * * * *
5401096 CTTTT-GTTCCCTGACTCATGATTTAATC-CTGGTCATTTTCATTTTTCTGATTCGTTA-TTTAA
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTATTTTT-TGACTC-ATAGTTTAA
** * ** * * * * * **
5401158 TCCTTC--TTGTTTTCATTTTCTGA--CATGTGATTTAATTTTGGT-TTTTTTCATTATCTAAGA
62 T-C-TCGATCATTTTCATTTTTTGACTCATG-G-TTTAATCCTAGTCATTTTTCATTTTTTGACT
* * * *
5401218 CGCGGTCTAATCCTCG-TA
123 CGTGGTTTAATCCTGGTTG
* * * *
5401236 TTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTTAATTTTTAACTCATAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
* * * * * *
5401301 GATCATTTTCATTTTTTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTT
66 GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGTTT
5401366 AATCCTGGTTG
131 AATCCTGGTTG
* * * * *
5401377 TTTCCATTTTTTGACTTGTGGTTTAATCT-GGCTCATTTTCATTTTTTGACTCAT-GACTTAAT-
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAG-TTTAATC
* * * * *
5401439 TAGGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGT-ATTTTTCATTTTTTGACTCATGG
64 T-CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGG
* * *
5401503 TCTAATCGTGGTCTT
128 TTTAATCCTGGT-TG
* * ***
5401518 TTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTCTTTTTTTGACGGGTAGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* * * * ** * * *
5401582 CCAATCGTTTTCA-TTTCTGACTTGTGGTTTAATCCTGGTCATTTTT-ATTTTTTGATTTGTGGT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
5401645 TTAAT-CTGGGTTG
129 TTAATCCT-GGTTG
* * * ** * * * ** *
5401658 TTTTCATTTTTTGACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACGGTTTAATCGC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
* *
5401723 TG-TCATTTTCATTTTTTTGACT--TGCGATTTAAT-CTCAGTCGTTCTTCATTTTTTGACTCGT
66 -GATCATTTTCA-TTTTTTGACTCATG-G-TTTAATCCT-AGTCATTTTTCATTTTTTGACTCGT
* * * *
5401784 GTTTTAATCATGATCG
126 GGTTTAATCCTGGTTG
* * * * * * * * ** *
5401800 TTTTCATTTCTTGACTCATGATTTAAACTCGATTGCA--TTCAATTTCTGACTCACGGTTTGATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGT-CATTTTTATTTTTTGACTCATAGTTTAATC
* * * *
5401863 CCAATCATTTTTC-TTTTCCTGACTCATGGTTTAATCCT-GCTCATTTTTC-TTTTTCTGACTGG
64 TCGATCA-TTTTCATTTT-TTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTT-TGACTCG
* * **
5401925 TGGTTTAATCCCGATCA
125 TGGTTTAATCCTGGTTG
* * * * * ** * *
5401942 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCAT-GCTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATCT
* * * * * *
5402006 AGGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCCCA--CTTGTTTTCATTTTCTGACTCATG
65 CGATCATTTTCATTTTT-TGACTC-ATGGTTTAATCCTAGTCAT-TTTTCATTTTTTGACTCGTG
5402067 GTTTAAT-CTAGGTTG
127 GTTTAATCCT-GGTTG
* ** * * * * *
5402082 TTTTTCATTTTTTAACTCGTACTTTAATCCCAGTCATTTTCATTTCTTGACTCAT-GATTCAAAC
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATC
* *** * * * * * * **
5402146 T-GGTCGCGTTCATTTTCTAACCCGTGGTTTAGTCTCGATAATTTTTTTTTCATTTTTTGA-TCG
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATC-C--T-AGTCATTTTTCATTTTTTGACTCG
5402209 T--TTTCAATTTCTGACTCGTGGTTTAATCCG
125 TGGTTT-AA----T--C-C-TGG--T--T--G
* * * * ** *
5402239 AATCCTTTTCGTTTTCTGACTCAAT-GTTTAATCTC-GATCGTTTTCCTTTTTCT-AGCT-AGTG
1 -----TTTTCATTTTTTGACTC-GTGGTTTAATCTCAG-TCATTTTTATTTTT-TGA-CTCA-TA
* * *
5402300 GTTTAATCTCGGTCATTTTTATTTTTTGACTCATGGTTTAATCCTTA-TC-GTTTTCATTTTTTG
56 GTTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCC-TAGTCATTTTTCATTTTTTG
* **
5402363 ACTAC-TGATTTAATCCTGGTCA
120 ACT-CGTGGTTTAATCCTGGTTG
* * * * *
5402385 TTTT--TTGTTTCTGACTCGTGATTTAATCTCAATCCTTGTCATTTTTTGACTCAT-GATTTAAT
1 TTTTCATT-TTT-TGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAAT
* ** * * * * * *
5402447 CCCGATTGTTTTCATCTCTTAACT--TGCGATTTAAACC-CG--ATTGTATTCATTTTTTGACTT
63 CTCGATCATTTTCATTTTTTGACTCATG-G-TTTAATCCTAGTCATT-T-TTCATTTTTTGACTC
*
5402507 GTGGTTTAATCCTGGTCG
124 GTGGTTTAATCCTGGTTG
* * * * **
5402525 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCGTTTTCATTTTTTGAATC-CCGATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAG-TTTAATC
* * * * * * * * * * * ***
5402588 TTGATCCTTTTTATTTTCTAACCCGTAGTTTAATACGAGTCA-TTTTCATTTCTTGACTCACAGT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
* *
5402652 TTAAT-CTCGATCG
129 TTAATCCT-GGTTG
* * * * * ** * * * * *
5402665 CTTTCATTTTTTTACTCGTGATTTAATTTCGGTCACTTTTCGTTCTCT-A-ACATGTGATTTAGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCA-TTTTTATTTTTTGACTCAT-AG-TTTAAT
* * ** * * * * * * *
5402728 TTCGGTGGTTTTGACTTTTTGACTCATGATTTACT-TTCAGT-AGTTTTCGA-TTTTTAACAT-G
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTC-ATTTTTTGAC-TCG
* * * **
5402789 TGATTTAAT-ATCGATCA
125 TGGTTTAATCCT-GGTTG
* * * * ** * ** * **
5402806 TTTTCATTTCTCTGATTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGT-GATTTAAT
1 TTTTCATTT-TTTGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTTTTGACTCATAG-TTTAAT
* * * * * * *
5402870 CTCGATCTTTTTCATTTTTTGATTGACGGTTTAATCAT-GATCA-TTTTCATTTTTTCACTCATG
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGTG
5402933 GTTTAAT-CTCGGTTG
127 GTTTAATCCT-GGTTG
** * * * * ** * * * **
5402948 TTTTTGTTTTCTGACTCTTGATTTAATTTTGGTCATTTTCA-TTTTTGATTTACGGTTTAAT-TC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCT-
* * * *** * * * **
5403011 CCATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA-TTTTCATTTTTTTGATTCGTTA
65 CGATC-ATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCA-TTTTTTGACTCGTGG
*
5403074 TTTAATCCTTGTTG
128 TTTAATCCTGGTTG
* * * * ** ** * ** * * *
5403088 TTTTCATTTTCTAACAT-GTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTCTAAT
1 TTTTCATTTTTTGAC-TCGTGGTTTAATCTCAGTCATTTTTATT-T-TTTGACTCATAGTTTAAT
* * * * * *
5403150 CCCTCG-T-ATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCATTTTT-AATTTTTAACTCA
63 --CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGACTCG
* * **
5403211 TAGTTTAAT-CTCGATCA
125 TGGTTTAATCCT-GGTTG
* * * * * * * * ** *
5403228 TTTCCATTTTCTGACCCATAGTTTAATC-CTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* ** * ** * *
5403292 -CTGGTTGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA-TTTTCATTTTTTGACTCATG
64 TC-GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGTG
* * *
5403354 GCTTAAT-CAGGATTA
127 GTTTAATCCTGG-TTG
* * * *
5403369 TTTTCATTTTTTGACTCATGGCTTAATCAT-AGT-ATTTTTCATTTTTTGACTCATGGTCTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCAGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* * * **
5403432 GT-GGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTC-TTTTCTTGACGGG
64 -TCGAT-CATTTTCATTTTTTGACTCATGGTTTAAT-CCTAGTCATTTTTCATTTT-TTGACTCG
* *** *
5403494 TAGTTTAATCCCAATCG
125 TGGTTTAATCCTGGTTG
* * * * ** * *
5403511 TTTTCA-TTTCTGACTTGTGGTTTAATC-CTGGTCATTTTTATTTTTTGATTTGTGGTTTAATTT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTATTTTTTGACTCATAGTTTAATCT
* * ** ** * * **
5403574 GGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGT--TGTTTTCATCTTGTGACTCACGGT
65 CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCAT-TTTTCATTTTTTGACTCGTGGT
**
5403637 TTAATCGCT-GTCA
129 TTAATC-CTGGTTG
* * * * *
5403650 TTTTCATTTTTTTGACTTGCGGTTTAATCTCAGTCGTTCTTCATTTTTTGACTCGT-GTTTTAAT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCTCAGTCATT-TTTATTTTTTGACTCATAG-TTTAAT
* * * * * * * * * *
5403714 CAT-GATCGTTTTCATTTCTTGACTCGTGATTTAAACC-CG--ATTGCATTCAATTTTTGATTCA
63 C-TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATT--TTTCATTTTTTGACTCG
* * * *** **
5403775 CGATTTGATCCCAATCA
125 TGGTTTAATCCTGGTTG
* * * * * * ** *
5403792 TTTT-TTTTTCTTGACTCATGATTTAATC-CTGCTCATTTTTCTTTTTCCGACTGGTGGTTTAAT
1 TTTTCATTTT-TTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTT-TGACTCATAGTTTAAT
* * * * * * * *
5403855 CCCGATCATTTCCATTTTCTGACTCATGGTTTAATCTTAGTCA-TTTCCATTTTCTGGCTCGTGC
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGG
**
5403919 TTTAAT-CTAGGTCA
128 TTTAATCCT-GGTTG
* * * ** ** * * *
5403933 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTGACTCGTGGTTTTAAT
1 TTTTCATTTTT-TGACTC-GTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAAT
* * ** * * ** * * *
5403996 CTAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCCTAGTC-GTTTTCATTTCTTGACTCATG
63 CT-CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTG
* * * *
5404060 ATTCAA-ACTGGTCG
127 GTTTAATCCTGGTTG
** * * * * ** *
5404074 CGTTCATTTTCTAACTCGTGGTTTAGTCTC-G--ATCTTT-TTTTTT---TCATTTTTTGATCGT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATC-T
** * * ** * ** * * ** * * * *
5404132 -TTTCAATTTTTGACTCGTGGTTTAATCCG---AATCCTTTTCGTTTTCTGACTCAATGTTTAAT
65 CGATC-A-TTTTCATTTTTTGACTCAT-GGTTTAATCCTAGTC-ATTT-T---TCATTTTTTGA-
*
5404193 CTCGATCGTTT--TCCT--TT-
121 CTCG-TGGTTTAATCCTGGTTG
* ** * * * * * * * * * **
5404210 TTCTAGCTAGTGGTTTAATCTCGGTCGTTTTCATTTTTTGACTCATGGTTTAATCCTTATCGTTT
1 TT-T-TC-A-TTTTTTGA-CTC-GT-GGTTT-A--ATCTCAGTCAT--TTTTAT--TTTTTG-AC
** * * * * *
5404275 TCATTTTTTGA-CTACTGATTTAATCCTAGTCATTTTTTAATTCTGACTCGTGATTTAAT-CTCA
51 TCATAGTTTAATCT-C-GA--TCAT--T-TTCA---TTT--TT-TGACTCATGGTTTAATCCT-A
* * * * * * *
5404338 ATC-GTTGTCATTTTTTGACTCATGATTTAATCCCGATTG
102 GTCATTTTTCATTTTTTGACTCGTGGTTTAATCCTGGTTG
* * * * * * * ** *
5404377 TTTTCATTTCTTAACTCGCGATTTAAAC-CCG--ATTGTATTCATTTTCTGACTTGTGGTTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATT-T-TT-ATTTTTTGACTCATAGTTTAAT
* * * * * * * *
5404439 C-CTGGTCGTTTTCATTTTTTGACTTATGGTTTAAT-TTCGATC-GTTTTCATTTTTCGAATCGT
63 CTC-GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGT
* * *
5404501 GATTTAATCTTGATCT-
126 GGTTTAATCCTGGT-TG
* * * * **** * * * *
5404517 TTCTT-ATTTTCTAACTCATAGTTTAATAGGGGTTATTTTCATTTTTTGACTCACAATTTAATCT
1 TT-TTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCT
** * * * * * * * * *
5404581 CGATCGCTTTCATTTTTTTACTCGTGATTTAAT-TTCGATCATTTTTCGTTCTCTGACAT-GTGA
65 CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGAC-TCGTGG
* * *
5404644 TTTAGT-TTCGGTGG
128 TTTAATCCT-GGTTG
* * * ** * * * * * *
5404658 TTTTGACTTTCTGACTCACGATTTACTTTCAGT-AGTTTTCGA-TTTTT-A-ACATTTGATTTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCA-TTTT-TATTTTTTGACTCA-TAG-TTTAA
* * * * ** * *
5404719 TATCGATCATTTTCATTTCTCTGACTCATGATTTAATGAC-AGTTGTTTTTCATTTTCTGACTTG
62 TCTCGATCATTTTCATTT-TTTGACTCATGGTTTAAT-CCTAGTCATTTTTCATTTTTTGACTCG
* * **
5404783 TGATTTAAT-CTCGATCA
125 TGGTTTAATCCT-GGTTG
* * * * * * *
5404800 TTTTCATTTTTTGA-TTGACGATTTAATCATGA-TCATTTTCATTTTTTCACTCATGGTTTAATC
1 TTTTCATTTTTTGACTCG-TGGTTTAATC-TCAGTCATTTTTATTTTTTGACTCATAGTTTAATC
** ** * * * ** * * ***
5404863 TCGATTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCA-TTTTCA-TTTTTGATTTACGGT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
** *
5404926 TTAATTCC-CATCG
129 TTAA-TCCTGGTTG
* *** * * * * * *
5404939 CTTTT-GTTCCCTGACTCATGATTTAATC-CTGGTCATTTTCATTTTTTTGATTCGTTA-TTTAA
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTA-TTTTTTGACTC-ATAGTTTAA
** * ** * * * * *
5405001 TCCTTC--TTGTTTTCATTTTCTGA--CATGTGATTTAATTTTGGT--TGTTTTCATTATCTAAG
62 T-C-TCGATCATTTTCATTTTTTGACTCATG-G-TTTAATCCTAGTCAT-TTTTCATTTTTTGAC
* * * * *
5405060 ACGCGGTCTAATCCTTCG-TA
122 TCGTGGTTTAATCC-TGGTTG
* * * * *
5405080 TTTTCATTTTATGACTCGTGGTTTATTCTCAGTCATTTTTAATATTTAACTCATAGTTTAATCTC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
* * * * *
5405145 GATCATTTTCATTTTTTGAC-CTATAGTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTT
66 GATCATTTTCATTTTTTGACTC-ATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGTT
5405209 TAATCCTGGTTG
130 TAATCCTGGTTG
* * * * * * * *
5405221 TTTCCATTTTTTGACTTGGGGTTTAATCT-GGCTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAGTTTAATCT
* * * * * *
5405285 GGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGT-ATTTTTCATTTTTTGACTCATGGTC
65 CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGTT
* *
5405349 TAATCGTGGTCTT
130 TAATCCTGGT-TG
* * * **
5405362 TTTTCATTTTTTGACTCGTGGTTTAATC-C---C--TTTCATTTTTTTAATC-GCGATTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATCT
* * ** * * * * ** * ***
5405420 TGATC-TTTCTTATTTCCTAACTCGTAGTTTAATACGGGTCA-TTTTCATTTCTTGACTCACAGT
65 CGATCATTT-TCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
* *
5405483 TTAAT-CTCGATCG
129 TTAATCCT-GGTTG
* * * * * * * * *
5405496 CTTTT-ATTTTTTTACTCGTGATTTAATTTCGGTCATTTTTCGTTCTCTGA--CATGTGATTTAG
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTTTTGACTCAT-AG-TTTAA
* * ** * * * * * * *
5405558 TTTCGGTGGTTTT-GTCTTTCTGACTCATGATTTACT-TTCAGT-AGTTTTCGA-TTTTTAACGT
62 TCTCGATCATTTTCAT-TTTTTGACTCATGGTTTAATCCT-AGTCATTTTTC-ATTTTTTGAC-T
* * * **
5405619 -GTGATTTAAT-ATCGATCA
123 CGTGGTTTAATCCT-GGTTG
* * * ** * ** * **
5405637 TTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGT-GATTTAAT
1 TTTTCATTT-TTTGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTTTTGACTCATAG-TTTAAT
* * * * *
5405701 CTCGATCATTTTCATTTTTTGATTGATGGTTTAATCATA-TCA-TTTTCATTTTTTCACTCATGG
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGG
5405764 TTTAAT-CTCGGTTG
128 TTTAATCCT-GGTTG
** * * * ** * * * * **
5405778 TTTTTGTTTTCTGACTCATGATTTAAAT-TTGGTCATTTTCATTTTAT-ATTTACGGTTTAAT-T
1 TTTTCATTTTTTGACTCGTGGTTT-AATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCT
* * * *** * * * *
5405840 CCCATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTGGTCA-TTTTCATTTTTTTGATTCGTT
65 -CGATC-ATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCA-TTTTTTGACTCGTG
* *
5405903 ATTTAATCCTTGTTG
127 GTTTAATCCTGGTTG
* * * ** ** * ** * * *
5405918 TTTTCATTTTCTGACAT-GTGATTTAATTTTGGTTGTTTTCATTATCTAAGACGC--GGTCTAAT
1 TTTTCATTTTTTGAC-TCGTGGTTTAATCTCAGTCATTTTTATT-T-TTTGACTCATAGTTTAAT
* * * * * * *
5405980 C-C-CTCCTATTTTCATTTTATGACTCGTGGTTT-ATTCTCAGTCATTTTTAATTTTTAG-CTCA
63 CTCGAT-C-ATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGACTCG
* * **
5406041 TAGTTTAAT-CTCGATCA
125 TGGTTTAATCCT-GGTTG
* * * * * * * ** *
5406058 TTTTCATTTTCTGACCCATAGTTTAATC-CTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* ** * ** * *
5406122 -CTGGTTGTTTCCATTTTTTGACTTGTGGTTTAAT-CTGGCTCA-TTTTCATTTTTTGACTCATG
64 TC-GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGTG
* * *
5406184 GCTTAAT-CAGGATTA
127 GTTTAATCCTGG-TTG
* * * *
5406199 TTTTCATTTTTTGACTCATGGCTTAATCAT-AGT-ATTTTTCATTTTTTGACTCATGGTCTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCAGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* * * **
5406262 GT-GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCTA-TCATTTTTC-TTTTCTTGACGGG
64 -TCGATC-ATTTTCATTTTTTGACTCATGGTTTAAT-CCTAGTCATTTTTCATTTT-TTGACTCG
* *** *
5406324 TAGTTTAATCCCAATCG
125 TGGTTTAATCCTGGTTG
* * * ** *
5406341 TTTTCA-TTTTTGACTTGTGGTTTAATC-CTGGTCATTTTTATTTTTTGATTTGTGGTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTATTTTTTGACTCATAGTTTAATCT
* * ** * * * **
5406404 GGGTTGTTTTCATTTTTTGACTCATGGTTTAATCC---CCATTGTTTTCATCTTGTGACTCACGG
65 CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCA-T-TTTTCATTTTTTGACTCGTGG
**
5406466 TTTAATCGCT-GTCA
128 TTTAATC-CTGGTTG
* * * * * *
5406480 TTTTCATTTTTTTGACTTGCGGTTTAATCTCAATCGTTCTTCATTTTTTGACTCGT-GTTTTAAT
1 TTTTCA-TTTTTTGACTCGTGGTTTAATCTCAGTCATT-TTTATTTTTTGACTCATAG-TTTAAT
* * * * * * *
5406544 CAT-GATCGTTTTCATTTCTTGACT-AGTGATTTAAACC-CG--ATTGTATTCAATTTCTGACTC
63 C-TCGATCATTTTCATTTTTTGACTCA-TGGTTTAATCCTAGTCATT-T-TTCATTTTTTGACTC
** * * ***
5406604 ACGATTTGATCCCAATCAT-
124 GTGGTTTAATCCTGGT--TG
* * * * * **** *
5406623 TTTTC-TTTTCCTGACTCATGGTTTAATC-CTGCTTATTTTTCTTTTTCTGAAGGGTGGTTTAAT
1 TTTTCATTTT-TTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTT-TGACTCATAGTTTAAT
* * * * * * * * *
5406686 CCCGATCATTTCCATTTTCTGACTCATGGTTTAATCTTAGTC-GTTTCCATTTTCTGGCTCGTGC
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGG
**
5406750 TTTAAT-CTAGGTCA
128 TTTAATCCT-GGTTG
* * * ** ** * * *
5406764 TTTTC-TTTTTCTGACTCAAT-GTTTAATCCCACTTGTTTTCGTTTTCTGACTCGTGGTTTTAAT
1 TTTTCATTTTT-TGACTC-GTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAAT
* * ** * * ** * * *
5406827 CTAGGTTGTTTTTCATTTTTTAACTCGTACTTTAATCCCAGTCA-TTTTCATTTCTTGACTCATG
63 CT-CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTG
* * * *
5406891 ATTCAA-ACTGGTCG
127 GTTTAATCCTGGTTG
** * * * *
5406905 CGTTCATTTTCTAACTCGTGGTTTAGTCTC-GATAATTTTTTTTTCATTTTTTGATCGTTTTCA-
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCA----TTTTT-ATTTTTTGA-C----TCAT
* * * * *
5406968 ATTTTTGACTCGTGGTTTAATCCGAATCCTTT-TTGTTTTCTGACTCAAT-GTTTAAT-CTCGGT
55 A-GTTT-AATC-TCG----AT-C--AT--TTTCAT-TTTT-TGACTC-ATGGTTTAATCCT-AGT
* * *
5407030 CGTTTTTC-TTTTTCT-AGCTAGTGGTTTAAT-CTCGGTCG
104 CATTTTTCATTTTT-TGA-CTCGTGGTTTAATCCT-GGTTG
* * * * *
5407068 TTTTCATTTTTTGACTCATGGTTTAATCCTTA-TCGTTTTCATTTTTTGAC-CACTAATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CTCAGTCATTTTTATTTTTTGACTCA-TAGTTTAATC
* * * * * * *
5407131 -CTGGTCATTTT--TTATTTCTGACTCGTGATTTAAT-CTCAATC-GTTGTCATTTTTTGACTCA
64 TC-GATCATTTTCATT-TTT-TGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGACTCG
* * *
5407191 TGATTTAATCCCGATTG
125 TGGTTTAATCCTGGTTG
* * * * * * ** *
5407208 TTTTCATTTCTTAACTCGCGATTTAAAC-CCG--ATTGTATTCATTTTTTGACTTGTGGTTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATT-T-TT-ATTTTTTGACTCATAGTTTAAT
* * * * * **
5407270 C-CTGGTCGTTTTCATTTTTTGACTCATGGTTTAAT-CTCGATC-GTTTTCATTTTTTGAATCAC
63 CTC-GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGACTCGT
* * *
5407332 GATTTAATCTTGATCT-
126 GGTTTAATCCTGGT-TG
* * * ** * * *
5407348 TTCTT-ATTTTCTAACTCGTAGTTTAATAC-GGGTCATTTTCACTTTTTGACTCACAGTTTAATC
1 TT-TTCATTTTTTGACTCGTGGTTTAAT-CTCAGTCATTTTTATTTTTTGACTCATAGTTTAATC
* * * * * * * * *
5407411 TCGATCATTTTCATTTTTTTACTCGTGATTTAAT-TTCGGTCATTTTTCGTTCTCTAACAT-GTG
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGAC-TCGTG
* * * *
5407474 ATTTAGT-TTCGTTGG
127 GTTTAATCCTGGTT-G
* * * * * * * ** * * *
5407489 TTTTGACTTTCTGACTCATGATTTACTTTCAGTTGTTTTCGA-TTTTT-A-ACATGTGATTTAAT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTT-TATTTTTTGACTCAT-AG-TTTAAT
* ** * * ** * *
5407551 ATCGATCATTTTCATTTCTCCGACTTCATGATTTAAT--GACGTTGTTTTTCATTTTCTGGACTT
63 CTCGATCATTTTCATTT-TTTGAC-TCATGGTTTAATCCTA-GTCATTTTTCATTTT-TTGACTC
* * *
5407614 GTGATTTAAT-CTCG-TA
124 GTGGTTTAATCCTGGTTG
* * *** * * * *
5407630 ATTTCA-TTTTTGATTAACGGTTTAATCATGA-TTATTTTCA-TTTTTGCACTCAT-GGTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCAGTCATTTTTATTTTTTG-ACTCATAGTTTAATC
* ** ** * * ** * * *
5407691 TCGGTTGTTTTTGTTTTTTGACGGC-TGATTTAATTTTGGTCA-TTTTCA-TTTTTGA-T-TTAC
64 TCGATCATTTTCATTTTTTGAC-TCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGT-G
* *
5407751 GTTTAATTCCT-ATCG
127 GTTTAA-TCCTGGTTG
*** * * * * * * * *
5407766 CTTTTGC-TTCCCTGACTCAT-ATTTAATC-CTGGTTATTTTCATTTTTTTGATTCGTTATTTTA
1 -TTTT-CATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTA-TTTTTTGACTC-ATAGTTTA
* * * ** * * *
5407828 ATCCTTCTG-T-GTTTTCATTTTCTGA--CATGTGATTTTAAT-TTTTTAATGTTTTCATTATCT
61 AT-C-TC-GATCATTTTCATTTTTTGACTCATG-G--TTTAATCCTAGTCAT-TTTTCATTTTTT
* ** * * *
5407888 AAGACGCGGTCTAATCCCTCG-T-
119 GACTCGTGGTTTAAT-CCTGGTTG
* * * * *
5407910 ATTTCA-TTTATGACTCGTGGTTTATTCTCAGTCATTTTTAATTTTAGTAACTCATAGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTT-TTGACTCATAGTTTAATC
* * * * *
5407974 TCGATCATTTTCATTTTCTGAC-CATAGTTTAATCCTAATCATTTTTCTTTTTTTTGACTGGTGG
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTC-ATTTTTTGACTCGTGG
5408038 TTTAATCCTGGTTG
128 TTTAATCCTGGTTG
* * * * * * *
5408052 TTTCCA-TTTTTGACTTGTGG-TTAATCT-GGCTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAGTTTAATCT
* * * * * *
5408114 GGATTATTTTCAATTTTTGACTCATGGCTTAATCATAGT-ATTTTTCATTTTTT-ACTCATTGGT
65 CGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTC-GTGGT
* *
5408177 CTAATCGTGGTCT-
129 TTAATCCTGGT-TG
* * **
5408190 TTTTCA-TTTTTGA----TGGTTTAATCCCTA-TCATTTTTCTTTTTTTTTGAC-GGTAGTTTAA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCA--TTT-TTATTTTTTGACTCATAGTTTAA
* * * ** * *
5408248 TCCCAATC-GTTTCA-TTTTTGACTTGTGGTTT-ATCCTGGTTCATTTTT-ATTTTTT-ACCTTT
62 TCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTGA-C-TC
5408308 GTGGTTTAAT-CTGGGTTG
124 GTGGTTTAATCCT-GGTTG
* * * * * * *
5408326 -TTTCATTTTTTGACTCATGGTTTAATCCCACT-GTTGTTTCATCTTGTGACTCACAGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATT-TTT-ATTTTTTGACTCATAGTTTAATC
* *** * * * *
5408389 ACTG-TCATTTTCATTTTTTTGACTTGCGGTTTAAT-CTCGGTCGTTCTTCATTTTTTGAATCGT
64 TC-GATCATTTTCA-TTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGACTCGT
* * * *
5408452 GTTTTAATCATGATCG
126 GGTTTAATCCTGGTTG
* * * * * * * * * * * *
5408468 TTGTCATTTCTTGACTCGTGATTCAAACCCAATTGCA--TTCAATTTCTGACTCATGGTTTGATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGT-CATTTTTATTTTTTGACTCATAGTTTAATC
* * * *
5408531 CCAATCATTTTTC-TTTTCCTGACTCATGGTTTAATCCT-GCTCATTTTTC-TTTTTGTGACTGG
64 TCGATCA-TTTTCATTTT-TTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTT-TGACTCG
* * **
5408593 TGGTTTAATCCCGATCA
125 TGGTTTAATCCTGGTTG
* * * * * ** * * *
5408610 TTTCCATTTTCTGACTCATGGTTTAATCTTAGTCGTTTCCATTTTCTGGCTCGT-GCTTTAATCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATCT
* * * *
5408674 AGGTCATTTTC-TTTTTCTGACTCAAT-GTTTAATCCCA--CTTGTTTTCATTTTTTGACTCGTG
65 CGATCATTTTCATTTTT-TGACTC-ATGGTTTAATCCTAGTCAT-TTTTCATTTTTTGACTCGTG
5408735 GTTTAAT-CTAGGTTG
127 GTTTAATCCT-GGTTG
* ** * * * * *
5408750 TTTTTCATTTTTTAACTCGTACTTTAATCCCAGTCATTTTCATTTCTTGACTCAT-GATTCAAAC
1 -TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAATC
* *** * * * * *
5408814 T-GGTCGCGTTCATTTTCTAACTCATGGTTTAGT-CTCGATCATTTTTTCTTTCATTTTTT-AAT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCA----TT-TTTCATTTTTTGACT
5408876 CGT--TTTCAATTTCTGACTCGTGGTTTAATCCG
123 CGTGGTTT-AA----T--C-C-TGG--T--T--G
* * * * ** *
5408908 AATCCTTTTCATTTTCTGACTCAAT-GTTTAATCTCGGTCGTTTTCCTTTTTCT-AGCT-AGTGG
1 -----TTTTCATTTTTTGACTC-GTGGTTTAATCTCAGTCATTTTTATTTTT-TGA-CTCA-TAG
*
5408970 TTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTTA-TC-GTTTTCATTTTTTGA
57 TTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCC-TAGTCATTTTTCATTTTTTGA
* *
5409033 CTAC-TGATTTAATCCTGGTTA
121 CT-CGTGGTTTAATCCTGGTTG
* * * * * *
5409054 TTTT--TTATTTCTGACTCATGATTTAATCTCAATCGTTGTCATTTTTTGACTCAT-GATTTAAT
1 TTTTCATT-TTT-TGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAG-TTTAAT
* ** * * ** * * *
5409116 CCCGATTGTTTTCATTTCTTAACTCGCGATTTAAACCT-G--ATTGTATTCATTTTTTGACTTGT
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATT-T-TTCATTTTTTGACTCGT
**
5409178 GGTTTAATCCTGGTCA
126 GGTTTAATCCTGGTTG
* * * *
5409194 TTTTCATTTTTTGACTCATGGTTTAATCTC-GATCATTTTCATTTTTTGAATCA-CGATTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTTATTTTTTGACTCATAG-TTTAATC
* * * * * * * ** *
5409257 TTGATC-TTTCTTATTTTCTAACTCGTAGTTTAATACGGGTCA-TTTTCACTTTTTTGACTC--A
64 TCGATCATTT-TCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCA-TTTTTTGACTCGTG
* **
5409318 GTTTAAT-CTCGATCA
127 GTTTAATCCT-GGTTG
* * * * * * * * *
5409333 TTTAT-ATTTTTTTACTCGTGATTTAATTTCGGTCATTTTTCGTTCTCTGA--CATGTGATTTAG
1 TTT-TCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTTTTGACTCAT-AG-TTTAA
* * ** * * * * * * * *
5409395 TTTCGGTGGTTTTGACTTTCTGACTCATGATTTACT-TTCAGT-AGTTTTCGA-TTTTTAACAT-
62 TCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTC-ATTTTTTGAC-TC
* * * **
5409456 GTGATTTAAT-ATCGATCA
124 GTGGTTTAATCCT-GGTTG
* * * ** * ** * **
5409474 TTTTCATTTTTCCGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGT-GATTTAAT
1 TTTTCATTTTT-TGACTCGTGGTTTAATCTCAGTCATTTTT-ATTTTTTGACTCATAG-TTTAAT
* * * * * *
5409538 CTCGATCATTTTCATTTTTTGATTAACGGTTTAATCAT-GATTA-TTTTCA-TTTTTGCACTCAT
63 CTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAG-TCATTTTTCATTTTTTG-ACTCGT
*
5409600 GGTTTAAT-CTCAGTTG
126 GGTTTAATCCT-GGTTG
** * * * ** * * * **
5409616 TTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCATTTTCA-TTTTTGATTTACGGTTTAAT-TC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCT-
* * * *** * *
5409679 CTATCGCTTTT-GTTCCCTGACTCATGATTTAATCCTAGTCA-TTTTCATTTTTTGACTTGTGGT
65 CGATC-ATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
*
5409742 TTAAT-CTGGTTCA
129 TTAATCCTGGTT-G
* * * *
5409755 TTTTCATTTTTTGACTCATGGCTTAATCAT-AGT-ATTTTTCATTTTTTGACTCATGGTCTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATC-TCAGTCATTTTT-ATTTTTTGACTCATAGTTTAATC
* * * * * *
5409818 GT-GGTCTTTTTTCATTTTTTGACAT-GTGGTTTAGTTTTATCCTAATCGTTTTTCTTTTTTTGA
64 -TCGATC-ATTTTCATTTTTTGAC-TCATGGTTTA-----ATCCTAGTCATTTTTCATTTTTTGA
* *
5409881 CTGGTGGTTTAATCTTGGTTG
121 CTCGTGGTTTAATCCTGGTTG
* * * * * * * *
5409902 TTTCCATTTTCTGACTTGTGGTTTAATCT-GGCTC-TTTTTCCTTTTCTGACTCATGGCTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAG-TCATTTTT-ATTTTTTGACTCATAGTTTAATC
** * * * *
5409965 AGGATTATTTTCATTTTTTGACTTATGGTTTAATCATAGTCA-TTTTCATTTTTTGAGAT-GTGG
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGA-CTCGTGG
* * *
5410028 TCTACTCGTGGTCCT-
128 TTTAATCCTGGT--TG
* * * * * **
5410043 TTTTCATTTTTTGACTTGTAGTTTAGTCCCTA-TCGTTTTT-TTTTTT-A-TGGGTAGTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTC-AGTCATTTTTATTTTTTGACT-CATAGTTTAATC
* * * * * ** * * * ** **
5410104 CCAATCGTTTTGATTTTCTGACTTGTGGTTTAATCCTGGTC-GTTTTCATTTTTTGATTTTTCTT
64 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGT
*
5410168 TTAAT-CTAGGTTTT
129 TTAATCCT-GG-TTG
** * ** * * * **
5410182 TTTTCATTTTTTGACTCACGGTTTAATCCCCTTCGTTTTCATCTTCCGACTCATAGTTTAATAC-
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAAT-CT
* * * * * *
5410246 CGATCATTTTCATTTTTTTGACTTACGATTTAAT-CTCAGTCGTTCTTCATTTTTTGACTCGTGT
65 CGATCATTTTCA-TTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTCATTTTTTGACTCGTGG
* * **
5410310 TTTAATCATGATCA
128 TTTAATCCTGGTTG
* * * * * * * * *
5410324 TTTTCATTTCTTGACTCGTGATTTAAACTCAATCGTATTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
*
5410389 AATCATTTT
66 GATCATTTT
5410398 TCTTTTTGAT
Statistics
Matches: 7403, Mismatches: 2075, Indels: 1619
0.67 0.19 0.15
Matches are distributed among these distances:
132 10 0.00
133 7 0.00
134 54 0.01
135 116 0.02
136 36 0.00
137 70 0.01
138 148 0.02
139 667 0.09
140 1765 0.24
141 2180 0.29
142 1490 0.20
143 205 0.03
144 39 0.01
145 32 0.00
146 59 0.01
147 80 0.01
148 7 0.00
149 4 0.00
150 5 0.00
151 16 0.00
152 24 0.00
153 12 0.00
154 10 0.00
155 4 0.00
156 4 0.00
157 3 0.00
158 47 0.01
159 14 0.00
160 21 0.00
161 64 0.01
162 75 0.01
163 71 0.01
164 42 0.01
165 3 0.00
166 4 0.00
167 3 0.00
168 5 0.00
169 2 0.00
170 5 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (141 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTCATAGTTTAATCTC
GATCATTTTCATTTTTTGACTCATGGTTTAATCCTAGTCATTTTTCATTTTTTGACTCGTGGTTT
AATCCTGGTTG
Found at i:5401777 original size:211 final size:210
Alignment explanation
Indices: 5401305--5401815 Score: 527
Period size: 211 Copynumber: 2.4 Consensus size: 210
5401295 AATCTCGATC
*
5401305 ATTTTCATTTTTTGAC-C-CATAGTTTAAT-CCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTA
1 ATTTTCATTTTTTGACTCGC-GA-TTTAATCCCT-ATCGTTTTTCTTTTTTTGACTGGT-GTTTA
* * * *
5401367 ATCCTGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATG
62 ATCCTGATCGTTTTCA-TTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATG
* * *
5401432 ACTTAATTAGGATTATTTTCATTTTTTGACTCATGGCTTAATCATAGTATTTTTCATTTTTTGAC
126 ACTTAATTAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGAC
*
5401497 TCATGGTCTAATCGTGGTCT
191 TCACGGTCTAATCGTGGTCT
* * * * *
5401517 TTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTTTTGACGGGTAGTTTAATC
1 ATTTTCATTTTTTGACTCGCGATTTAATCCCTATCGTTTTTCTTTTTTTGACTGGT-GTTTAATC
** * * ** **
5401582 CCAATCGTTTTCATTTCTGACTTGTGGTTTAATCCTGG-TCATTTTTATTTTTTGATTTGTGGTT
65 CTGATCGTTTTCATTTCTGACTTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGACT
* * * * *
5401646 TAATCT-GGGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCCGT-TGTTTTCATCTTGTGACT
129 TAAT-TAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTAT-TTTTCATCTTGTGACT
*
5401709 CACGGTTTAATCGCT-GTC-
192 CACGGTCTAATCG-TGGTCT
* * * * *
5401727 ATTTTCATTTTTTTGACTTGCGATTTAATCTC-AGTCGTTCTTCATTTTTTGACTCGTGTTTTAA
1 ATTTTCA-TTTTTTGACTCGCGATTTAATCCCTA-TCGTTTTTCTTTTTTTGACTGGTG-TTTAA
*
5401791 TCATGATCGTTTTCATTTCTTGACT
63 TCCTGATCGTTTTCATTTC-TGACT
5401816 CATGATTTAA
Statistics
Matches: 246, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
210 9 0.04
211 163 0.66
212 70 0.28
213 4 0.02
ACGTcount: A:0.17, C:0.16, G:0.15, T:0.52
Consensus pattern (210 bp):
ATTTTCATTTTTTGACTCGCGATTTAATCCCTATCGTTTTTCTTTTTTTGACTGGTGTTTAATCC
TGATCGTTTTCATTTCTGACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGACTTA
ATTAGGATTATTTTCATTTTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCACG
GTCTAATCGTGGTCT
Found at i:5402255 original size:35 final size:34
Alignment explanation
Indices: 5402204--5411972 Score: 917
Period size: 35 Copynumber: 280.0 Consensus size: 34
5402194 TTCATTTTTT
* * *
5402204 GATCGTTTTCAATTTCTGACTCGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5402238 GAATCCTTTTCGTTTTCTGACTCAAT-GTTTAATCTC
1 G-ATCATTTTCATTTTCTGACTC-ATGGTTTAATC-C
* *
5402274 GATCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 GATCATTTT-CATTTTCTGA-CTCA-TGGTTTAATC-C
* * *
5402310 GGTCATTTTTATTTTTTGACTCATGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5402344 TTATCGTTTTCATTTTTTGACT-ACTGATTTAATCC
1 -GATCATTTTCATTTTCTGACTCA-TGGTTTAATCC
* * * *
5402379 TGGTCATTTT-TTGTTTCTGACTCGTGATTTAATCTC
1 -GATCATTTTCAT-TTTCTGACTCATGGTTTAATC-C
* * * * *
5402415 AATCCTTGTCATTTTTTGACTCATGATTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * * *
5402450 GATTGTTTTCA-TCTCTTAACT--TGCGATTTAAACCC
1 GATCATTTTCATTTTC-TGACTCATG-G-TTT-AATCC
** * * **
5402485 GATTGTATTCATTTTTTGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5402519 TGGTCGTTTTCATTTTTTGACTCATGGTTTAATCTC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * ** * *
5402555 GATCGTTTTCATTTTTTGAATCCCGATTTAATCTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * * * *
5402590 GATCCTTTTTATTTTCTAACCCGTAGTTTAATAC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
**
5402624 GAGTCATTTTCA-TTTCTTGACTCACAGTTTAATCTC
1 GA-TCATTTTCATTTTC-TGACTCATGGTTTAATC-C
** * * * * *
5402660 GATCGCTTTCATTTTTTTACTCGTGATTTAATTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * * *
5402695 GGTCACTTTTCGTTCTCT-A-ACATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTCTGACTCATG-G-TTTA-ATCC
* ** * * * *
5402731 GGTGGTTTTGACTTTT-TGACTCATGATTTACTTTC
1 GATCATTTTCA-TTTTCTGACTCATGGTTTA-ATCC
* *
5402766 -AGT-AGTTTTCGATTTT-T-A-ACATGTGATTTAATATC
1 GA-TCA-TTTTC-ATTTTCTGACTCATG-G-TTTAAT-CC
* * *
5402801 GATCATTTTCATTTCTCTGATTCATGATTTAATGACG
1 GATCATTTTCATTT-TCTGACTCATGGTTTAAT--CC
* ** ** *
5402838 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * * *
5402873 GATCTTTTTCATTTTTTGATTGACGGTTTAATCAT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5402908 GATCATTTTCATTTTTTCACTCATGGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** ** * * **
5402943 GGTTGTTTTTGTTTTCTGACTCTTGATTTAATTTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * *
5402978 GGTCATTTTCATTTT-TGATTTACGGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * ** *
5403012 CATCGCTTTT-GTTCCCTGACTCATGATTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * **
5403046 TGGTCATTTTCATTTTTTTGATTCGTTATTTAATCC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATCC
** * **
5403082 TTG-TTGTTTTCATTTTCT-A-ACATGTGATTTAATTTT
1 --GATCATTTTCATTTTCTGACTCATG-G-TTTAA-TCC
* ** * * *
5403118 GGTTGTTTTCATTATCTAAGACGC--GGTCTAATCC
1 GATCATTTTCATTTTCT--GACTCATGGTTTAATCC
* * * *
5403152 -CTCGTATTTTCATTTTATGACTCGTGGTTTATTCTC
1 GATC--ATTTTCATTTTCTGACTCATGGTTTAATC-C
* * *
5403188 -AGTCATTTTTAATTTT-TAACTCATAGTTTAATCTC
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* * *
5403223 GATCATTTCCATTTTCTGACCCATAGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * **
5403257 TAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 -GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* ** * * ** *
5403293 TGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5403329 GCTCATTTTCATTTTTTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5403364 GATTATTTTCATTTTTTGACTCATGGCTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5403398 TAGT-ATTTTTCATTTTTTGACTCATGGTCTAATCGT
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5403434 GGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCC
1 GAT-CATTTTCATTTTCTGACTCATGGTTTAAT-CC
* *** *
5403470 TATCATTTTTC-TTTTCTTGACGGGTAGTTTAATCCC
1 GATCA-TTTTCATTTTC-TGACTCATGGTTTAAT-CC
* * **
5403506 AATCGTTTTCA-TTTCTGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * ** **
5403539 TGGTCATTTTTATTTTTTGATTTGTGGTTTAATTTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* ** *
5403575 GGTTGTTTTCATTTTTTGACTCATGGTTTAATCCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT--CC
** * * *
5403611 G-TTGTTTTCATCTTGTGACTCACGGTTTAATCGC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ***
5403645 TG-TCATTTTCATTTTTTTGACTTGCGGTTTAATCTC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * *
5403681 -AGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCAT
1 GA-TCATT-TTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5403717 GATCGTTTTCA-TTTCTTGACTCGTGATTTAAACCC
1 GATCATTTTCATTTTC-TGACTCATGGTTT-AATCC
* * * *
5403752 GATTGCA--TTCAATTTT-TGATTCACGATTTGATCCC
1 GA-T-CATTTTC-ATTTTCTGACTCATGGTTTAAT-CC
* * *
5403787 AATCATTTT-TTTTTCTTGACTCATGATTTAATCC
1 GATCATTTTCATTTTC-TGACTCATGGTTTAATCC
* * * **
5403821 TGCTCATTTTTCTTTTTCCGACTGGTGGTTTAATCCC
1 -GATCA-TTTTCATTTTCTGACTCATGGTTTAAT-CC
* *
5403858 GATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * *
5403892 TAGTCATTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5403928 GGTCATTTTCTTTTTCTGACTCAAT-GTTTAATCC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATCC
* ** * * *
5403962 CACTTGTTTTCGTTTTCTGACTCGTGGTTTTAATCTAG
1 GA-TCATTTTCATTTTCTGACTCATGG-TTTAATC--C
* ** * * * **
5404000 GTTGTTTTTCATTTTTTAACTCGTACTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * *
5404034 TAGTCGTTTTCA-TTTCTTGACTCATGATTCAAACT
1 GA-TCATTTTCATTTTC-TGACTCATGGTTTAATCC
* *** * * *
5404069 GGTCGCGTTCATTTTCTAACTCGTGGTTTAGTCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
*
5404104 GATC-TTTT--TTTT-T---TCAT--TTT--T-T
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5404126 GATCGTTTTCAATTTT-TGACTCGTGGTTTAATCC
1 GATCATTTTC-ATTTTCTGACTCATGGTTTAATCC
* *
5404160 GAATCCTTTTCGTTTTCTGACTCAAT-GTTTAATCTC
1 G-ATCATTTTCATTTTCTGACTC-ATGGTTTAATC-C
* *
5404196 GATCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 GATCATTTT-CATTTTCTGA-CTCA-TGGTTTAATC-C
* * *
5404232 GGTCGTTTTCATTTTTTGACTCATGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5404266 TTATCGTTTTCATTTTTTGACT-ACTGATTTAATCC
1 -GATCATTTTCATTTTCTGACTCA-TGGTTTAATCC
* * *
5404301 TAGTCATTTT--TTAATTCTGACTCGTGATTTAATCTC
1 GA-TCATTTTCATT--TTCTGACTCATGGTTTAATC-C
* * * * *
5404337 AATCGTTGTCATTTTTTGACTCATGATTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * ** * *
5404372 GATTGTTTTCA-TTTCTTAACTCGCGATTTAAACCC
1 GATCATTTTCATTTTC-TGACTCATGGTTT-AATCC
** * **
5404407 GATTGTATTCATTTTCTGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * *
5404441 TGGTCGTTTTCATTTTTTGACTTATGGTTTAATTTC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * *
5404477 GATCGTTTTCATTTT-TCGAATCGTGATTTAATCTT
1 GATCATTTTCATTTTCT-GACTCATGGTTTAATC-C
* * * **
5404512 GATC-TTTCTTATTTTCTAACTCATAGTTTAATAGG
1 GATCATTT-TCATTTTCTGACTCATGGTTTAAT-CC
* * * ***
5404547 GGTTATTTTCATTTTTTGACTCACAATTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
** * * * * *
5404582 GATCGCTTTCATTTTTTTACTCGTGATTTAATTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * *
5404617 GATCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTCTGACTCATG-G-TTTA-ATCC
* ** * * * * * *
5404653 GGTGGTTTTGACTTTCTGACTCACGATTTACTTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTA-ATCC
* * * *
5404688 -AGT-AGTTTTCGATTTT-TAACAT-TTGATTTAATATC
1 GA-TCA-TTTTC-ATTTTCTGAC-TCATGGTTTAAT-CC
* *
5404723 GATCATTTTCATTTCTCTGACTCATGATTTAATGACA
1 GATCATTTTCATTT-TCTGACTCATGGTTTAAT--CC
* ** ** *
5404760 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * * *
5404795 GATCATTTTCATTTTTTGATTGACGATTTAATCAT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5404830 GATCATTTTCATTTTTTCACTCATGGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
** ** * * **
5404865 GATTGTTTTTGTTTTCTGACTCGTGATTTAATTTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * *
5404900 GGTCATTTTCATTTT-TGATTTACGGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * ** *
5404934 CATCGCTTTT-GTTCCCTGACTCATGATTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * **
5404968 TGGTCATTTTCATTTTTTTGATTCGTTATTTAATCC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATCC
* * **
5405004 -TTCTTGTTTTCATTTTCTGA--CATGTGATTTAATTTT
1 GATC--ATTTTCATTTTCTGACTCATG-G-TTTAA-TCC
* ** * * *
5405040 GGTTGTTTTCATTATCTAAGACGC--GGTCTAATCC
1 GATCATTTTCATTTTCT--GACTCATGGTTTAATCC
* * * *
5405074 -TTCGTATTTTCATTTTATGACTCGTGGTTTATTCTC
1 GATC--ATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5405110 -AGTCATTTTTAATATT-TAACTCATAGTTTAATCTC
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5405145 GATCATTTTCATTTTTTGAC-CTATAGTTTAATCC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATCC
* * * * **
5405179 TAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 -GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* ** * * *** *
5405215 TGGTTGTTTCCATTTTTTGACTTGGGGTTTAATCTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5405251 GCTCATTTTCATTTTTTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5405286 GATTATTTTCATTTTTTGACTCATGGCTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5405320 TAGT-ATTTTTCATTTTTTGACTCATGGTCTAATCGT
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5405356 GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * * ** * *
5405391 ---C--TTTCATTTTTTTAATCGCGATTTAATCTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * * *
5405421 GATC-TTTCTTATTTCCTAACTCGTAGTTTAATACG
1 GATCATTT-TCATTTTCTGACTCATGGTTTAAT-CC
* **
5405456 GGTCATTTTCA-TTTCTTGACTCACAGTTTAATCTC
1 GATCATTTTCATTTTC-TGACTCATGGTTTAATC-C
* * * * * *
5405491 GATCGCTTTT-ATTTTTTTACTCGTGATTTAATTTC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * *
5405526 GGTCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTCTGACTCATG-G-TTTA-ATCC
* ** * * * *
5405562 GGTGGTTTT-GTCTTTCTGACTCATGATTTACTTTC
1 GATCATTTTCAT-TTTCTGACTCATGGTTTA-ATCC
* * * *
5405597 -AGT-AGTTTTCGATTTT-TAACGT-GTGATTTAATATC
1 GA-TCA-TTTTC-ATTTTCTGAC-TCATGGTTTAAT-CC
* *
5405632 GATCATTTTCATTTCTCTGACTCATGATTTAATGACG
1 GATCATTTTCATTT-TCTGACTCATGGTTTAAT--CC
* ** ** *
5405669 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5405704 GATCATTTTCATTTTTTGATTGATGGTTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5405738 TATCATTTTCATTTTTTCACTCATGGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** ** * **
5405773 GGTTGTTTTTGTTTTCTGACTCATGATTTAAATTT
1 GATCATTTTCATTTTCTGACTCATGGTTT-AATCC
* * * * *
5405808 GGTCATTTTCATTTTAT-ATTTACGGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * ** *
5405842 CATCGCTTTT-GTTCCCTGACTCATGATTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * **
5405876 TGGTCATTTTCATTTTTTTGATTCGTTATTTAATCC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATCC
** **
5405912 TTG-TTGTTTTCATTTTCTGA--CATGTGATTTAATTTT
1 --GATCATTTTCATTTTCTGACTCATG-G-TTTAA-TCC
* ** * * *
5405948 GGTTGTTTTCATTATCTAAGACGC--GGTCTAATCC
1 GATCATTTTCATTTTCT--GACTCATGGTTTAATCC
* * * *
5405982 -CTCCTATTTTCATTTTATGACTCGTGGTTTATTCTC
1 GAT-C-ATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5406018 -AGTCATTTTTAATTTT-T-AGCTCATAGTTTAATCTC
1 GA-TCA-TTTTCATTTTCTGA-CTCATGGTTTAATC-C
* *
5406053 GATCATTTTCATTTTCTGACCCATAGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * **
5406087 TAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 -GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* ** * * ** *
5406123 TGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5406159 GCTCATTTTCATTTTTTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5406194 GATTATTTTCATTTTTTGACTCATGGCTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5406228 TAGT-ATTTTTCATTTTTTGACTCATGGTCTAATCGT
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5406264 GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAAT-CC
* *** *
5406300 TATCATTTTTC-TTTTCTTGACGGGTAGTTTAATCCC
1 GATCA-TTTTCATTTTC-TGACTCATGGTTTAAT-CC
* * **
5406336 AATCGTTTTCATTTT-TGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * ** *
5406369 TGGTCATTTTTATTTTTTGATTTGTGGTTTAATCTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** *
5406405 GGTTGTTTTCATTTTTTGACTCATGGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* ** * * *
5406440 CATTGTTTTCATCTTGTGACTCACGGTTTAATCGC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ***
5406475 TG-TCATTTTCATTTTTTTGACTTGCGGTTTAATCTC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * * *
5406511 AATCGTTCTTCATTTTTTGACTCGTGTTTTAATCAT
1 GATCATT-TTCATTTTCTGACTCATGGTTTAATC-C
* * *
5406547 GATCGTTTTCA-TTTCTTGACT-AGTGATTTAAACCC
1 GATCATTTTCATTTTC-TGACTCA-TGGTTT-AATCC
** * * * * *
5406582 GATTGTATTCAATTTCTGACTCACGATTTGATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
*
5406617 AATCATTTTTC-TTTTCCTGACTCATGGTTTAATCC
1 GATCA-TTTTCATTTT-CTGACTCATGGTTTAATCC
* * * ****
5406652 TGCTTATTTTTCTTTTTCTGAAGGGTGGTTTAATCCC
1 -GATCA-TTTTCATTTTCTGACTCATGGTTTAAT-CC
* *
5406689 GATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5406723 TAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5406759 GGTCATTTTCTTTTTCTGACTCAAT-GTTTAATCC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATCC
* ** * * *
5406793 CACTTGTTTTCGTTTTCTGACTCGTGGTTTTAATCTAG
1 GA-TCATTTTCATTTTCTGACTCATGG-TTTAATC--C
* ** * * * **
5406831 GTTGTTTTTCATTTTTTAACTCGTACTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * *
5406865 CAGTCATTTTCA-TTTCTTGACTCATGATTCAAACT
1 GA-TCATTTTCATTTTC-TGACTCATGGTTTAATCC
* *** * * *
5406900 GGTCGCGTTCATTTTCTAACTCGTGGTTTAGTCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** *
5406935 GAT-AATTT--TTTT-T---TCATTTTTTGAT-C
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
** * * * ** *
5406961 G-T--TTTCAATTTTTGACT--CGT--GGTTTAATCCG
1 GATCATTTTCA-TTTT--CTGAC-TCATGGTTTAATCC
* * **
5406992 AATCCTTTTTGTTTTCTGACTCAAT-GTTTAATCTC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATC-C
* * *
5407027 GGTCGTTTTTCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 GATC-ATTTTCATTTTCTGA-CTCA-TGGTTTAATC-C
* * *
5407063 GGTCGTTTTCATTTTTTGACTCATGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * **
5407097 TTATCGTTTTCATTTTTTGAC-CACTAATTTAATCC
1 -GATCATTTTCATTTTCTGACTCA-TGGTTTAATCC
* * * *
5407132 TGGTCATTTT-TTATTTCTGACTCGTGATTTAATCTC
1 -GATCATTTTCAT-TTTCTGACTCATGGTTTAATC-C
* * * * *
5407168 AATCGTTGTCATTTTTTGACTCATGATTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * ** * *
5407203 GATTGTTTTCA-TTTCTTAACTCGCGATTTAAACCC
1 GATCATTTTCATTTTC-TGACTCATGGTTT-AATCC
** * * **
5407238 GATTGTATTCATTTTTTGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5407272 TGGTCGTTTTCATTTTTTGACTCATGGTTTAATCTC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * * *
5407308 GATCGTTTTCATTTTTTGAATCACGATTTAATCTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5407343 GATC-TTTCTTATTTTCTAACTCGTAGTTTAATACG
1 GATCATTT-TCATTTTCTGACTCATGGTTTAAT-CC
* **
5407378 GGTCATTTTCACTTTT-TGACTCACAGTTTAATCTC
1 GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * *
5407413 GATCATTTTCATTTTTTTACTCGTGATTTAATTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * * *
5407448 GGTCATTTTTCGTTCTCT-A-ACATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTCTGACTCATG-G-TTTA-ATCC
* ** * * * * *
5407484 GTTGGTTTTGACTTTCTGACTCATGATTTACTTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTA-ATCC
** * *
5407519 -AGTTGTTTTCGATTTT-T-A-ACATGTGATTTAATATC
1 GA-TCATTTTC-ATTTTCTGACTCATG-G-TTTAAT-CC
* * *
5407554 GATCATTTTCATTTCTCCGACTTCATGATTTAATGAC
1 GATCATTTTCATTT-TCTGAC-TCATGGTTTAAT-CC
* ** ** *
5407591 GTTGTTTTTCATTTTCTGGACTTGTGATTTAATCTC
1 GATCATTTTCATTTTCT-GACTCATGGTTTAATC-C
* * * * *
5407627 G-T-AATTTCATTTT-TGATTAACGGTTTAATCAT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
*
5407659 GATTATTTTCATTTT-TGCACTCATGG-TTAATCTC
1 GATCATTTTCATTTTCTG-ACTCATGGTTTAATC-C
* ** ** * * * **
5407693 GGTTGTTTTTGTTTTTTGACGGC-TGATTTAATTTT
1 GATCATTTTCATTTTCTGAC-TCATGGTTTAA-TCC
* * * *
5407728 GGTCATTTTCATTTT-TGATTTA-CGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * ** *
5407761 TATCGCTTTTGC-TTCCCTGACTCAT-ATTTAATCC
1 GATC-ATTTT-CATTTTCTGACTCATGGTTTAATCC
* * * * * **
5407795 TGGTTATTTTCATTTTTTTGATTCGTTATTTTAATCC
1 -GATCATTTTCA-TTTTCTGACTC-ATGGTTTAATCC
* * **
5407832 -TTCTGTGTTTTCATTTTCTGA--CATGTGATTTTAATTT
1 GATC---ATTTTCATTTTCTGACTCATG-G--TTTAATCC
** * * * *
5407869 TTTAATGTTTTCATTATCTAAGACGC--GGTCTAATCC
1 GATCA--TTTTCATTTTCT--GACTCATGGTTTAATCC
* * * * *
5407905 -CTCGTATTTCA-TTTATGACTCGTGGTTTATTCTC
1 GATCAT-TTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5407939 -AGTCATTTTTAATTTTAGTAACTCATAGTTTAATCTC
1 GA-TCA-TTTTCATTTT-CTGACTCATGGTTTAATC-C
*
5407976 GATCATTTTCATTTTCTGAC-CATAGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * **
5408009 TAATCATTTTTCTTTTTTTTGACTGGTGGTTTAATCC
1 -GATCA-TTTTC-ATTTTCTGACTCATGGTTTAATCC
* ** * ** *
5408046 TGGTTGTTTCCATTTT-TGACTTGTGG-TTAATCTG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5408080 GCTCATTTTCATTTTTTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * *
5408115 GATTATTTTCAATTTT-TGACTCATGGCTTAATCA
1 GATCATTTTC-ATTTTCTGACTCATGGTTTAATCC
* * * *
5408149 TAGT-ATTTTTCATTTT-TTACTCATTGGTCTAATCGT
1 GA-TCA-TTTTCATTTTCTGACTCA-TGGTTTAATC-C
* *
5408185 GGTCTTTTTCATTTT-TG----ATGGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* * * ** *
5408215 TATCATTTTTCTTTTTTTTTGAC-GGTAGTTTAATCCC
1 GATCA-TTTTC--ATTTTCTGACTCATGGTTTAAT-CC
* * **
5408252 AATC-GTTTCATTTT-TGACTTGTGGTTT-ATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * ** *
5408283 TGGTTCATTTTTATTTT-TTACCTTTGTGGTTTAATCTG
1 --GATCATTTTCATTTTCTGA-C-TCATGGTTTAATC-C
* *
5408321 GGT--TGTTTCATTTTTTGACTCATGGTTTAATCC
1 GATCAT-TTTCATTTTCTGACTCATGGTTTAATCC
* ** * * **
5408354 CACTGTTGTTTCATCTTGTGACTCACAGTTTAATCAC
1 GA-TCAT-TTTCATTTTCTGACTCATGGTTTAATC-C
* ***
5408391 TG-TCATTTTCATTTTTTTGACTTGCGGTTTAATCTC
1 -GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * * * *
5408427 GGTCGTTCTTCATTTTTTGAATCGTGTTTTAATCAT
1 GATCATT-TTCATTTTCTGACTCATGGTTTAATC-C
* * * * * *
5408463 GATCGTTGTCA-TTTCTTGACTCGTGATTCAAACC
1 GATCATTTTCATTTTC-TGACTCATGGTTTAATCC
* * *
5408497 CA--ATTGCATTCAATTTCTGACTCATGGTTTGATCCC
1 GATCATT---TTCATTTTCTGACTCATGGTTTAAT-CC
*
5408533 AATCATTTTTC-TTTTCCTGACTCATGGTTTAATCC
1 GATCA-TTTTCATTTT-CTGACTCATGGTTTAATCC
* * * **
5408568 TGCTCATTTTTCTTTTTGTGACTGGTGGTTTAATCCC
1 -GATCA-TTTTCATTTTCTGACTCATGGTTTAAT-CC
* *
5408605 GATCATTTCCATTTTCTGACTCATGGTTTAATCT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5408639 TAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5408675 GGTCATTTTCTTTTTCTGACTCAAT-GTTTAATCC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATCC
* ** * * *
5408709 CACTTGTTTTCATTTTTTGACTCGTGGTTTAATCTAG
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC--C
* ** * * * **
5408746 GTTGTTTTTCATTTTTTAACTCGTACTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * *
5408780 CAGTCATTTTCA-TTTCTTGACTCATGATTCAAACT
1 GA-TCATTTTCATTTTC-TGACTCATGGTTTAATCC
* *** * *
5408815 GGTCGCGTTCATTTTCTAACTCATGGTTTAGTCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* **
5408850 GATCA--TT--TTTTCT--TTCATTTTTTAAT-C
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5408877 G----TTTTCAATTTCTGACTCGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
*
5408907 GAATCCTTTTCATTTTCTGACTCAAT-GTTTAATCTC
1 G-ATCATTTTCATTTTCTGACTC-ATGGTTTAATC-C
* * *
5408943 GGTCGTTTTCCTTTTTCT-AGCT-AGTGGTTTAATCTC
1 GATCATTTT-CATTTTCTGA-CTCA-TGGTTTAATC-C
*
5408979 GATCATTTTCATTTTTTGACTCATGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5409013 TTATCGTTTTCATTTTTTGACT-ACTGATTTAATCC
1 -GATCATTTTCATTTTCTGACTCA-TGGTTTAATCC
* * * *
5409048 TGGTTATTTT-TTATTTCTGACTCATGATTTAATCTC
1 -GATCATTTTCAT-TTTCTGACTCATGGTTTAATC-C
* * * * *
5409084 AATCGTTGTCATTTTTTGACTCATGATTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * ** * *
5409119 GATTGTTTTCA-TTTCTTAACTCGCGATTTAAACC
1 GATCATTTTCATTTTC-TGACTCATGGTTTAATCC
** * * **
5409153 TGATTGTATTCATTTTTTGACTTGTGGTTTAATCC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5409188 TGGTCATTTTCATTTTTTGACTCATGGTTTAATCTC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5409224 GATCATTTTCATTTTTTGAATCACGATTTAATCTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5409259 GATC-TTTCTTATTTTCTAACTCGTAGTTTAATACG
1 GATCATTT-TCATTTTCTGACTCATGGTTTAAT-CC
* *
5409294 GGTCATTTTCACTTTTTTGACTCA--GTTTAATCTC
1 GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * *
5409328 GATCATTTAT-ATTTTTTTACTCGTGATTTAATTTC
1 GATCATTT-TCATTTTCTGACTCATGGTTTAA-TCC
* * * * *
5409363 GGTCATTTTTCGTTCTCTGA--CATGTGATTTAGTTTC
1 GATCA-TTTTCATTTTCTGACTCATG-G-TTTA-ATCC
* ** * * * * *
5409399 GGTGGTTTTGACTTTCTGACTCATGATTTACTTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTA-ATCC
* *
5409434 -AGT-AGTTTTCGATTTT-T-A-ACATGTGATTTAATATC
1 GA-TCA-TTTTC-ATTTTCTGACTCATG-G-TTTAAT-CC
* * *
5409469 GATCATTTTCATTTTTCCGACTCATGATTTAATGACG
1 GATCATTTTCA-TTTTCTGACTCATGGTTTAAT--CC
* ** ** *
5409506 GTTGTTTTTCATTTTCTGACTTGTGATTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5409541 GATCATTTTCATTTTTTGATTAACGGTTTAATCAT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
*
5409576 GATTATTTTCATTTT-TGCACTCATGGTTTAATCTC
1 GATCATTTTCATTTTCTG-ACTCATGGTTTAATC-C
** ** * * **
5409611 -AGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTT
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * *
5409646 GGTCATTTTCATTTT-TGATTTACGGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * ** *
5409680 TATCGCTTTT-GTTCCCTGACTCATGATTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * ** *
5409714 TAGTCATTTTCATTTTTTGACTTGTGGTTTAATCTG
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5409750 GTTCATTTTCATTTTTTGACTCATGGCTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5409784 TAGT-ATTTTTCATTTTTTGACTCATGGTCTAATCGT
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5409820 GGTCTTTTTTCATTTTTTGACAT-GTGGTTTAGTTTTATCC
1 GATC-ATTTTCATTTTCTGAC-TCATGGTTTA-----ATCC
* * * * ** *
5409860 TAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCTT
1 -GATC-ATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** * ** *
5409897 GGTTGTTTCCATTTTCTGACTTGTGGTTTAATCTG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5409932 GCTCTTTTTCCTTTTCTGACTCATGGCTTAATCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * *
5409967 GATTATTTTCATTTTTTGACTTATGGTTTAATCA
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5410001 TAGTCATTTTCATTTTTTGAGAT-GTGGTCTACTCGT
1 GA-TCATTTTCATTTTCTGA-CTCATGGTTTAATC-C
* * * ** * *
5410037 GGTCCTTTTTCATTTTTTGACTTGTAGTTTAGTCCC
1 GAT-CATTTTCATTTTCTGACTCATGGTTTAAT-CC
* * * * ** *
5410073 TATCGTTTT--TTTTTTTA-TGGGTAGTTTAATCCC
1 GATCATTTTCATTTTCTGACT-CATGGTTTAAT-CC
* * * **
5410106 AATCGTTTTGATTTTCTGACTTGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * ** ** *
5410140 TGGTCGTTTTCATTTTTTGATTTTTCTTTTAATCTAG
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC--C
* ** * *
5410177 GTTTTTTTTCATTTTTTGACTCACGGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * * * *
5410212 CTTCGTTTTCATCTTCCGACTCATAGTTTAATACC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* * * *
5410247 GATCATTTTCATTTTTTTGACTTACGATTTAATCTC
1 GATCATTTTCA-TTTTCTGACTCATGGTTTAATC-C
* * * * *
5410283 -AGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCAT
1 GA-TCATT-TTCATTTTCTGACTCATGGTTTAATC-C
* * *
5410319 GATCATTTTCA-TTTCTTGACTCGTGATTTAAACTC
1 GATCATTTTCATTTTC-TGACTCATGGTTTAATC-C
* * * *
5410354 AATCGTATTCATTTTTTGACTCATGGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
*
5410389 AATCATTTTTC-TTTT-TGA-T--T--TTT--T--
1 GATCA-TTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5410413 TATCGTTCTCATTTTCTAACTCTTAGCTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* *
5410448 -AGTCATTTTCA-TTTCTTACTCATGGTTTAATCT
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATCC
* * **
5410481 TATTCATTTTTCTTTTTCTGACTGGTGGTTTAATCCC
1 GA-TCA-TTTTCATTTTCTGACTCATGGTTTAAT-CC
* * *
5410518 GGTCATTTCCATTTTCTGACTCATGGTTTAATCT
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5410552 TAGTCGTTTCCATTTTCTGGCTCGTGCTTTAATCTA
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * *
5410588 GGTCATTTTCTTTTTCTGACTCATTGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* ** ** * * *
5410622 CACTTGTTTTTGTTTTCTGACTCGTGGTATAATCTAG
1 GA-TCATTTTCATTTTCTGACTCATGGTTTAATC--C
* ** * * ** **
5410659 GTTGTTTTTCATTTTTTAACTTGTACTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * * * * *
5410693 CAGTCATTTT-AATTTCTTGACTCTTGATTCAAACT
1 GA-TCATTTTCATTTTC-TGACTCATGGTTTAATCC
* *** * * *
5410728 GGTCGCATTCATTTTCTAACTCGTGGTTTAGTCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* *
5410763 GAT-A-ATT--TTTT-T---TCA---TTT-CT-C
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5410784 GATCGTTTTCATTTTCTAACTCGTGGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* *
5410819 AATCATTTTCGTTTTCTGACTCAAT-GTTTAATCTC
1 GATCATTTTCATTTTCTGACTC-ATGGTTTAATC-C
* * * * * *
5410854 GATCGGTTTCCTTTTTCTAACTAATTGTTTAATCTC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5410890 GGTCATTTTCATTTTCTGACTCGTGGTTTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* *
5410924 TTATCATTTT--TTTT-T-ACT-AGTGATTTAATCC
1 -GATCATTTTCATTTTCTGACTCA-TGGTTTAATCC
* * * *
5410955 TAGTCATTTT-TTATTTATGACTCATGATTTAATCTC
1 GA-TCATTTTCAT-TTTCTGACTCATGGTTTAATC-C
* * * *
5410991 TG-TCATTGTCATTTTTTGACTCTTGATTTAATCCC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
** * *
5411026 GATTGTTTTCA-TTTCTTAACTCA-GGATTTAAACC
1 GATCATTTTCATTTTC-TGACTCATGG-TTTAATCC
** * * *
5411060 TGATTGTATTCATTTTTTGACTCGTGGTTTAATCC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * *
5411095 TGGTCGTTTTCATTTTTTGACTCATGGTTTAATCTC
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
**
5411131 GATCATTTTCATTTTCTGACTCGCGGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
** * * ** * **
5411166 GATTTTTTTTATTTTCTAACTTGTAGTTTAATAAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* * **
5411201 GGTCATTTTCATTTTTTGACTCAAAGTTTAATCCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* * * * *
5411236 GGTCATTTTCATTTTTTAACTCATGATTTAATTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * *
5411271 -AGTCATTTT-TTGTTCTCTGA--CATGTGATTTAGTTTC
1 GA-TCATTTTCAT-TT-TCTGACTCATG-G-TTTA-ATCC
* ** * * * *
5411307 GGTGGTTTTGATTTTCTGACTTATGATTTATTCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5411342 -AGT-AGTTTTTGATTTT-TGA--CATGTGATTTAATATC
1 GA-TCA--TTTTCATTTTCTGACTCATG-G-TTTAAT-CC
* * *
5411377 GATAATTTTCATTTCTCTGACTCATGATTTAATGACG
1 GATCATTTTCATTT-TCTGACTCATGGTTTAAT--CC
* ** ** * *
5411414 GTTGTTTTTCATTTTCTGACTTGTGATTTAATTTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
** * * * **
5411449 GATTGTTTTCATTTTTTGACTCACGGTTTACTAAT
1 GATCATTTTCATTTTCTGACTCATGGTTTAAT-CC
* **
5411484 GATCATTTTCATTTTTTGACTTGTGGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* ** ** * * **
5411519 GGTTGTTTTGGTTTTCTTACTCATGATTTAATTTT
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * *
5411554 GGTCATTATCATTTTTTGACTTACGGTTTAATTCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
* * * * *
5411589 CATCGCTTTT-GTTCTCTGACTCAT-ATTTAATCC
1 GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* * * *
5411622 TAGTCATTTTCACTTTTCTTA-TCCGTGATTTAATCC
1 GA-TCATTTTCA-TTTTCTGACT-CATGGTTTAATCC
** * * **
5411658 TTG-TTGTTTTCATTTTCTGACTCGTGATTTAATTTT
1 --GATCATTTTCATTTTCTGACTCATGGTTTAA-TCC
** ** * * *
5411694 TTTTGTTTTCATTATCTAAGACGC--GGTCTAATCC
1 GATCATTTTCATTTTCT--GACTCATGGTTTAATCC
** * * *
5411728 CTTGCATTTTCATTTTATGACTCGTGGTTTATTCTC
1 GAT-CATTTTCATTTTCTGACTCATGGTTTAATC-C
* * *
5411764 AATCATTTTTATTTTCTGACTCATAGTTTAATCTC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5411799 GATCATTTTCATTTTCTGACCCATGGTCTAATCC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATCC
* * * **
5411833 TGATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCC
1 -GATC-ATTTTCATTTTCTGACTCATGGTTTAATCC
* ** * * ** *
5411869 TGGTTGTTTCCATTTTTTGACTTGTGGTTTAATCTA
1 -GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* * * * *
5411905 GCTCATTTTCATTTTTTGACTCATGGCTTAGTCAG
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC-C
* *
5411940 GATTATTTTCATTTTTTGACTCATGGTTTAATC
1 GATCATTTTCATTTTCTGACTCATGGTTTAATC
5411973 ATAGTCATNN
Statistics
Matches: 7065, Mismatches: 1955, Indels: 1429
0.68 0.19 0.14
Matches are distributed among these distances:
21 4 0.00
22 4 0.00
23 11 0.00
24 13 0.00
25 9 0.00
26 12 0.00
27 14 0.00
28 11 0.00
29 49 0.01
30 21 0.00
31 51 0.01
32 38 0.01
33 184 0.03
34 672 0.10
35 4136 0.59
36 1477 0.21
37 293 0.04
38 24 0.00
39 12 0.00
40 1 0.00
41 29 0.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (34 bp):
GATCATTTTCATTTTCTGACTCATGGTTTAATCC
Found at i:5403360 original size:106 final size:103
Alignment explanation
Indices: 5403213--5403747 Score: 321
Period size: 106 Copynumber: 5.1 Consensus size: 103
5403203 TTAACTCATA
* * * * *
5403213 GTTTAATCTCGATCATTTCCATTTTCTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGA
1 GTTTAATCT-GGTCATTTTCATTTTTTGACTCATGGTTTAATCCT-ATC-TTTTTCTTTTTTTGA
* *
5403278 CTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGTG
63 CTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
* ** *
5403319 GTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGAT-TATTTTCATTTTTTGA
1 GTTTAATCTGG-TCATTTTCATTTTTTGACTCATGGTTTAATC-CTATCT-TTTTCTTTTTTTGA
** * * **
5403383 CTCATGGCTTAATCATAGTAT-TTTTCATTTTTTGACTCATG
63 CTGGTGGTTTAATCCTAGT-TGTTTTCATTTTTTGACTTGTG
* * * *
5403424 GTCTAATCGTGGTCCTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTCTTG
1 GTTTAATC-TGGT-CATTTTCATTTTTTGACTCATGGTTTAAT-CCTATC-TTTTTCTTTTTTTG
* * * * * *
5403489 ACGGGTAGTTTAATCCCAATCGTTTTCA-TTTCTGACTTGTG
62 ACTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
* * ** * * *
5403530 GTTTAATCCTGGTCATTTTTATTTTTTGATTTGTGGTTTAAT-TTGGGT-TGTTTTCATTTTTTG
1 GTTTAAT-CTGGTCATTTTCATTTTTTGACTCATGGTTTAATCCT--ATCT-TTTTCTTTTTTTG
** ** * * ***
5403593 ACTCATGGTTTAATCCCCGTTGTTTTCATCTTGTGACTCACG
62 ACTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
*** * *
5403635 GTTTAATC-GCTGTCATTTTCATTTTTTTGACTTGCGGTTTAAT-CTCAGTCGTTCTTCATTTTT
1 GTTTAATCTG--GTCATTTTCA-TTTTTTGACTCATGGTTTAATCCT-A-TC-TTTTTCTTTTTT
* * * * * *
5403698 TGACTCGTGTTTTAATCAT-GATCGTTTTCATTTCTTGACTCGTG
60 TGACTGGTGGTTTAATCCTAG-TTGTTTTCATTTTTTGACTTGTG
*
5403742 ATTTAA
1 GTTTAA
5403748 ACCCGATTGC
Statistics
Matches: 331, Mismatches: 76, Indels: 43
0.74 0.17 0.10
Matches are distributed among these distances:
103 3 0.01
104 34 0.10
105 103 0.31
106 111 0.34
107 78 0.24
108 2 0.01
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.51
Consensus pattern (103 bp):
GTTTAATCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCCTATCTTTTTCTTTTTTTGACTG
GTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
Found at i:5403714 original size:211 final size:209
Alignment explanation
Indices: 5403248--5403747 Score: 526
Period size: 211 Copynumber: 2.4 Consensus size: 209
5403238 CTGACCCATA
* * * *
5403248 GTTTAAT-CCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTG
1 GTTTAATCCCT-ATCGTTTTTC-TTTTTTGACTGGT-GTTTAATCCTGATCGTTTTCA-TTTCTG
5403312 ACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATT
62 ACTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATT
* * * * *
5403377 TTTTGACTCATGGCTTAATCATAGTATTTTTCATTTTTTGACTCATGGTCTAATCGTGGTCCTTT
127 TTTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCACGGTCTAATCGTGGTCCATT
*
5403442 TTCATTTTTTGACTCGTG
192 TTCATTTTTTGACTCGCG
* * **
5403460 GTTTAATCCCTATCATTTTTCTTTTCTTGACGGGTAGTTTAATCCCAATCGTTTTCATTTCTGAC
1 GTTTAATCCCTATCGTTTTTCTTTT-TTGACTGGT-GTTTAATCCTGATCGTTTTCATTTCTGAC
* * ** * ** * *
5403525 TTGTGGTTTAATCCTGG-TCATTTTTATTTTTTGATTTGTGGTTTAATTTGGGTTGTTTTCATTT
64 TTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTT
* * * *
5403589 TTTGACTCATGGTTTAATCCCCGT-TGTTTTCATCTTGTGACTCACGGTTTAATCGCT-GT-CAT
128 TTTGACTCATGGCTTAATCACAGTAT-TTTTCATCTTGTGACTCACGGTCTAATCG-TGGTCCAT
*
5403651 TTTCATTTTTTTGACTTGCG
191 TTTCA-TTTTTTGACTCGCG
* * * *
5403671 GTTTAATCTC-AGTCGTTCTTCATTTTTTGACTCGTGTTTTAATCATGATCGTTTTCATTTCTTG
1 GTTTAATCCCTA-TCGTTTTTC-TTTTTTGACTGGTG-TTTAATCCTGATCGTTTTCATTTC-TG
* *
5403735 ACTCGTGATTTAA
62 ACTTGTGGTTTAA
5403748 ACCCGATTGC
Statistics
Matches: 239, Mismatches: 39, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
210 10 0.04
211 164 0.69
212 62 0.26
213 3 0.01
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (209 bp):
GTTTAATCCCTATCGTTTTTCTTTTTTGACTGGTGTTTAATCCTGATCGTTTTCATTTCTGACTT
GTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTTT
GACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCACGGTCTAATCGTGGTCCATTTTCA
TTTTTTGACTCGCG
Found at i:5404136 original size:17 final size:18
Alignment explanation
Indices: 5404114--5404149 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
5404104 GATCTTTTTT
*
5404114 TTTTCATTTTTTGA-TCG
1 TTTTCAATTTTTGACTCG
5404131 TTTTCAATTTTTGACTCG
1 TTTTCAATTTTTGACTCG
5404149 T
1 T
5404150 GGTTTAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (18 bp):
TTTTCAATTTTTGACTCG
Found at i:5404752 original size:71 final size:72
Alignment explanation
Indices: 5404667--5404826 Score: 184
Period size: 71 Copynumber: 2.2 Consensus size: 72
5404657 GTTTTGACTT
* **
5404667 TCTGACTCACGATTTACTTTCAGTAG-TTTTCGATTTT-TAACATT-TGATTTAATATCGATCAT
1 TCTGACTCACGATTTAATGACAGTAGTTTTTC-ATTTTCTAAC-TTGTGATTTAATATCGATCAT
5404729 TTTCATTTC
64 TTTCATTTC
* * * *
5404738 TCTGACTCATGATTTAATGACAGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTT
1 TCTGACTCACGATTTAATGACAGTAGTTTTTCATTTTCTAACTTGTGATTTAATATCGATCATTT
5404803 TCATTT-
66 TCATTTC
* * *
5404809 TTTGATTGACGATTTAAT
1 TCTGACTCACGATTTAAT
5404827 CATGATCATT
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
71 42 0.56
72 33 0.44
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (72 bp):
TCTGACTCACGATTTAATGACAGTAGTTTTTCATTTTCTAACTTGTGATTTAATATCGATCATTT
TCATTTC
Found at i:5404847 original size:72 final size:71
Alignment explanation
Indices: 5404711--5404844 Score: 164
Period size: 72 Copynumber: 1.9 Consensus size: 71
5404701 TTTTAACATT
* * **
5404711 TGATTTAATATCGATCATTTTCATTTCTCTGACTCATGATTTAATGACAGTTGTTTTTCATTTTC
1 TGATTTAATATCGATCATTTTCATTTCTCTGACTCACGATTTAAT-ACAGATCATTTTCATTTTC
5404776 TGACTTG
65 TGACTTG
* * * *
5404783 TGATTTAATCTCGATCATTTTCATTT-TTTGATTGACGATTTAAT-CATGATCATTTTCATTTT
1 TGATTTAATATCGATCATTTTCATTTCTCTGACTCACGATTTAATACA-GATCATTTTCATTTT
5404845 TTCACTCATG
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
69 2 0.04
70 12 0.23
71 14 0.26
72 25 0.47
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.51
Consensus pattern (71 bp):
TGATTTAATATCGATCATTTTCATTTCTCTGACTCACGATTTAATACAGATCATTTTCATTTTCT
GACTTG
Found at i:5405415 original size:29 final size:29
Alignment explanation
Indices: 5405363--5405418 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
5405353 CGTGGTCTTT
* * *
5405363 TTTCATTTTTTGACTCGTGGTTTAATCCC
1 TTTCATTTTTTGAATCGCGATTTAATCCC
*
5405392 TTTCATTTTTTTAATCGCGATTTAATC
1 TTTCATTTTTTGAATCGCGATTTAATC
5405419 TTGATCTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.54
Consensus pattern (29 bp):
TTTCATTTTTTGAATCGCGATTTAATCCC
Found at i:5405658 original size:71 final size:72
Alignment explanation
Indices: 5405576--5405717 Score: 189
Period size: 72 Copynumber: 2.0 Consensus size: 72
5405566 GTTTTGTCTT
* **
5405576 TCTGACTCATGATTTACTTTCAGTAG-TTTTCGATTTT-TAACGTGTGATTTAATATCGATCATT
1 TCTGACTCATGATTTAATGACAGTAGTTTTTC-ATTTTCTAACGTGTGATTTAATATCGATCATT
5405639 TTCATTTC
65 TTCATTTC
* * * * *
5405647 TCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCATTT
1 TCTGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACGTGTGATTTAATATCGATCATTT
5405712 TCATTT
66 TCATTT
5405718 TTTGATTGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 26 0.43
72 35 0.57
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.50
Consensus pattern (72 bp):
TCTGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACGTGTGATTTAATATCGATCATTT
TCATTTC
Found at i:5405676 original size:106 final size:105
Alignment explanation
Indices: 5405482--5405822 Score: 256
Period size: 106 Copynumber: 3.2 Consensus size: 105
5405472 TGACTCACAG
* * * * * *
5405482 TTTAATCTCGATCGCTTTT-ATTTTTTTACTCGTGATTTAATTTCGGTCATTTTTC-GTTCTCTG
1 TTTAATCTCGATC-ATTTTCATTTTTTAAGT-GTGATTTAATATCGATCA-TTTTCATTTCTCTG
* * * *
5405545 ACAT-GTGATTTAGTTTCGGTGGTTTTGTCTTTCTGACTCATGA
63 AC-TCATGATTTAATCTCGGTTGTTTTGTCTTTCTGACTCATGA
* *
5405588 TTTACTTTC-AGT-AGTTTTCGA-TTTTTAACGTGTGATTTAATATCGATCATTTTCATTTCTCT
1 TTTAATCTCGA-TCA-TTTTC-ATTTTTTAA-GTGTGATTTAATATCGATCATTTTCATTTCTCT
** **
5405650 GACTCATGATTTAATGACGGTTGTTTT-TCATTTTCTGACTTGTGA
62 GACTCATGATTTAATCTCGGTTGTTTTGTC--TTTCTGACTCATGA
* * * * *
5405695 TTTAATCTCGATCATTTTCATTTTTTGATTGATGGTTTAATCAT--ATCATTTTCATTT-TTTCA
1 TTTAATCTCGATCATTTTCATTTTTTAAGTG-TGATTTAAT-ATCGATCATTTTCATTTCTCTGA
*
5405757 CTCATGGTTTAATCTCGGTTGTTTTTGT-TTTCTGACTCATGA
64 CTCATGATTTAATCTCGGTTG-TTTTGTCTTTCTGACTCATGA
* *
5405799 TTTAAAT-TTGGTCATTTTCATTTT
1 TTT-AATCTCGATCATTTTCATTTT
5405823 ATATTTACGG
Statistics
Matches: 189, Mismatches: 29, Indels: 36
0.74 0.11 0.14
Matches are distributed among these distances:
104 30 0.16
105 37 0.20
106 76 0.40
107 42 0.22
108 4 0.02
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.53
Consensus pattern (105 bp):
TTTAATCTCGATCATTTTCATTTTTTAAGTGTGATTTAATATCGATCATTTTCATTTCTCTGACT
CATGATTTAATCTCGGTTGTTTTGTCTTTCTGACTCATGA
Found at i:5405748 original size:34 final size:34
Alignment explanation
Indices: 5405674--5405772 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
5405664 TGACGGTTGT
* *
5405674 TTTTCATTTTCTGACTTG-TGATTTAATCTCGATCA
1 TTTTCATTTTTTGA-TTGATGGTTTAATCTC-ATCA
5405709 TTTTCATTTTTTGATTGATGGTTTAATCAT-ATCA
1 TTTTCATTTTTTGATTGATGGTTTAATC-TCATCA
* * *
5405743 TTTTCATTTTTTCACTCATGGTTTAATCTC
1 TTTTCATTTTTTGATTGATGGTTTAATCTC
5405773 GGTTGTTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
33 1 0.02
34 32 0.57
35 22 0.39
36 1 0.02
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (34 bp):
TTTTCATTTTTTGATTGATGGTTTAATCTCATCA
Found at i:5406153 original size:106 final size:104
Alignment explanation
Indices: 5406043--5406721 Score: 356
Period size: 106 Copynumber: 6.4 Consensus size: 104
5406033 TTAGCTCATA
* * * *
5406043 GTTTAATCTCGATCATTTTCATTTTCTGACCCATAGTTTAATCCTAATCGTTTTTCTTTTTTTGA
1 GTTTAATCTCGGTCATTTTCATTTTTTGACTCATGGTTTAATCCT-ATC-TTTTTCTTTTTTTGA
* *
5406108 CTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGACTTGTG
64 CTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
* ** *
5406149 GTTTAATCT-GGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGAT-TATTTTCATTTTTTG
1 GTTTAATCTCGG-TCATTTTCATTTTTTGACTCATGGTTTAATC-CTATCT-TTTTCTTTTTTTG
** * * **
5406212 ACTCATGGCTTAATCATAGTAT-TTTTCATTTTTTGACTCATG
63 ACTGGTGGTTTAATCCTAGT-TGTTTTCATTTTTTGACTTGTG
* * * *
5406254 GTCTAATCGT-GGTCTTTTTTCATTTTTTGACTCGTGGTTTAATCCCTATCATTTTTCTTTTCTT
1 GTTTAATC-TCGGTC-ATTTTCATTTTTTGACTCATGGTTTAAT-CCTATC-TTTTTCTTTTTTT
* * * * *
5406318 GACGGGTAGTTTAATCCCAATCGTTTTCA-TTTTTGACTTGTG
62 GACTGGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
* * ** * *
5406360 GTTTAATC-CTGGTCATTTTTATTTTTTGATTTGTGGTTTAAT-CTGGGT-TGTTTTCATTTTTT
1 GTTTAATCTC-GGTCATTTTCATTTTTTGACTCATGGTTTAATCCT--ATCT-TTTTCTTTTTTT
** * * * ***
5406422 GACTCATGGTTTAATCCCCA-TTGTTTTCATCTTGTGACTCACG
62 GACTGGTGGTTTAAT-CCTAGTTGTTTTCATTTTTTGACTTGTG
* * *** * * *
5406465 GTTTAATCGCTGTCATTTTCATTTTTTTGACTTGCGGTTTAATCTCAATCGTTCTTCATTTTTTG
1 GTTTAATCTCGGTCATTTTCA-TTTTTTGACTCATGGTTTAATC-CTATC-TTTTTCTTTTTTTG
* * * * * *
5406530 ACTCGTGTTTTAATCAT-GATCGTTTTCATTTCTTGACTAGTG
63 ACTGGTGGTTTAATCCTAG-TTGTTTTCATTTTTTGACTTGTG
* * * * ** * * * * * * * **
5406572 ATTTAAACCCGATTGTATTCAATTTCTGACTCACGATTTGATCCCAATCATTTTTCTTTTCCTGA
1 GTTTAATCTCGGTCATTTTCATTTTTTGACTCATGGTTTAAT-CCTATC-TTTTTCTTTTTTTGA
** * ***
5406637 CTCATGGTTTAATCCT-GCTTATTTTTC-TTTTTCTGAAGGGTG
64 CTGGTGGTTTAATCCTAG-TT-GTTTTCATTTTT-TGACTTGTG
* * * *
5406679 GTTTAATCCCGATCATTTCCATTTTCTGACTCATGGTTTAATC
1 GTTTAATCTCGGTCATTTTCATTTTTTGACTCATGGTTTAATC
5406722 TTAGTCGTTT
Statistics
Matches: 435, Mismatches: 110, Indels: 56
0.72 0.18 0.09
Matches are distributed among these distances:
103 3 0.01
104 30 0.07
105 108 0.25
106 164 0.38
107 127 0.29
108 3 0.01
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (104 bp):
GTTTAATCTCGGTCATTTTCATTTTTTGACTCATGGTTTAATCCTATCTTTTTCTTTTTTTGACT
GGTGGTTTAATCCTAGTTGTTTTCATTTTTTGACTTGTG
Found at i:5406544 original size:211 final size:208
Alignment explanation
Indices: 5406078--5406577 Score: 542
Period size: 211 Copynumber: 2.4 Consensus size: 208
5406068 CTGACCCATA
* * *
5406078 GTTTAATCCTAATCGTTTTTCTTTTTTTGACTGGTGGTTTAATCCTGGTTGTTTCCATTTTTTGA
1 GTTTAATCC-AATCGTTTTTC-TTTTTTGACTGGT-GTTTAATCCTGATCGTTTTCA-TTTTTGA
5406143 CTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTT
62 CTTGTGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTT
* * * * *
5406208 TTTGACTCATGGCTTAATCATAGTATTTTTCATTTTTTGACTCATGGTCTAATCGTGGTCTTTTT
127 TTTGACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCACGGTCTAATCGTGGTCTATTT
*
5406273 TCATTTTTTGACTCGTG
192 TCATTTTTTGACTCGCG
* * * **
5406290 GTTTAATCCCTATCATTTTTCTTTTCTTGACGGGTAGTTTAATCCCAATCGTTTTCATTTTTGAC
1 GTTTAAT-CCAATCGTTTTTCTTTT-TTGACTGGT-GTTTAATCCTGATCGTTTTCATTTTTGAC
* * ** * * * *
5406355 TTGTGGTTTAATCCTGG-TCATTTTTATTTTTTGATTTGTGGTTTAATCTGGGTTGTTTTCATTT
63 TTGTGGTTTAAT-CTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTT
* * *
5406419 TTTGACTCATGGTTTAATCCCCA-T-TGTTTTCATCTTGTGACTCACGGTTTAATCGCT-GTC-A
127 TTTGACTCATGGCTTAAT-CACAGTAT-TTTTCATCTTGTGACTCACGGTCTAATCG-TGGTCTA
*
5406480 TTTTCATTTTTTTGACTTGCG
189 TTTTCA-TTTTTTGACTCGCG
* * *
5406501 GTTTAATCTCAATCGTTCTTCATTTTTTGACTCGTGTTTTAATCATGATCGTTTTCATTTCTTGA
1 GTTTAATC-CAATCGTTTTTC-TTTTTTGACTGGTG-TTTAATCCTGATCGTTTTCATTT-TTGA
* *
5406566 CTAGTGATTTAA
62 CTTGTGGTTTAA
5406578 ACCCGATTGT
Statistics
Matches: 240, Mismatches: 37, Indels: 22
0.80 0.12 0.07
Matches are distributed among these distances:
210 9 0.04
211 164 0.68
212 65 0.27
213 2 0.01
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.52
Consensus pattern (208 bp):
GTTTAATCCAATCGTTTTTCTTTTTTGACTGGTGTTTAATCCTGATCGTTTTCATTTTTGACTTG
TGGTTTAATCTGGCTCATTTTCATTTTTTGACTCATGGCTTAATCAGGATTATTTTCATTTTTTG
ACTCATGGCTTAATCACAGTATTTTTCATCTTGTGACTCACGGTCTAATCGTGGTCTATTTTCAT
TTTTTGACTCGCG
Found at i:5406967 original size:17 final size:18
Alignment explanation
Indices: 5406945--5406980 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
5406935 GATAATTTTT
*
5406945 TTTTCATTTTTTGA-TCG
1 TTTTCAATTTTTGACTCG
5406962 TTTTCAATTTTTGACTCG
1 TTTTCAATTTTTGACTCG
5406980 T
1 T
5406981 GGTTTAATCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (18 bp):
TTTTCAATTTTTGACTCG
Found at i:5408362 original size:36 final size:34
Alignment explanation
Indices: 5408322--5408412 Score: 94
Period size: 36 Copynumber: 2.6 Consensus size: 34
5408312 TTTAATCTGG
**
5408322 GTTGTTTCATTTTTTGACTCATGGTTTAATCCCACT
1 GTTGTTTCATTTTTTGACTCACAGTTTAAT--CACT
* *
5408358 GTTGTTTCATCTTGTGACTCACAGTTTAATCACT
1 GTTGTTTCATTTTTTGACTCACAGTTTAATCACT
5408392 GTCAT-TTTCATTTTTTTGACT
1 GT--TGTTTCA-TTTTTTGACT
5408413 TGCGGTTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
34 6 0.13
35 5 0.11
36 35 0.76
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.51
Consensus pattern (34 bp):
GTTGTTTCATTTTTTGACTCACAGTTTAATCACT
Found at i:5408560 original size:36 final size:35
Alignment explanation
Indices: 5408510--5408637 Score: 150
Period size: 36 Copynumber: 3.6 Consensus size: 35
5408500 TTGCATTCAA
* *
5408510 TTTCTGACTCATGGTTTGATCCCAATCATTTTTCT
1 TTTCTGACTCATGGTTTAATCCCGATCATTTTTCT
* *
5408545 TTTCCTGACTCATGGTTTAATCCTGCTCATTTTTCTT
1 TTT-CTGACTCATGGTTTAATCCCGATCATTTTTC-T
* ** *
5408582 TTTGTGACTGGTGGTTTAATCCCGATCA-TTTCCAT
1 TTTCTGACTCATGGTTTAATCCCGATCATTTTTC-T
5408617 TTTCTGACTCATGGTTTAATC
1 TTTCTGACTCATGGTTTAATC
5408638 TTAGTCGTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
35 26 0.34
36 47 0.61
37 4 0.05
ACGTcount: A:0.16, C:0.22, G:0.14, T:0.48
Consensus pattern (35 bp):
TTTCTGACTCATGGTTTAATCCCGATCATTTTTCT
Found at i:5409367 original size:69 final size:69
Alignment explanation
Indices: 5409191--5409371 Score: 181
Period size: 69 Copynumber: 2.6 Consensus size: 69
5409181 TTAATCCTGG
* * * * *
5409191 TCATTTTCATTTTTTGACTCATGGTTTAATCTCGATCATTTTCATTTTTTGAATCACGATTTAAT
1 TCATTTT-ATTTTTTAACTCGTGATTTAATTTCGGTCATTTTCATTTTTTGAATCACGATTTAAT
*
5409256 CTTGA
65 CTCGA
* * * *
5409261 TCTTTCTTATTTTCTAACTCGT-AGTTTAA-TACGGGTCATTTTCACTTTTTTGACTCA-G-TTT
1 TCATT-TTATTTTTTAACTCGTGA-TTTAATTTC-GGTCATTTTCA-TTTTTTGAATCACGATTT
5409322 AATCTCGA
62 AATCTCGA
*
5409330 TCATTTATATTTTTTTACTCGTGATTTAATTTCGGTCATTTT
1 TCATTT-TATTTTTTAACTCGTGATTTAATTTCGGTCATTTT
5409372 TCGTTCTCTG
Statistics
Matches: 90, Mismatches: 14, Indels: 15
0.76 0.12 0.13
Matches are distributed among these distances:
68 1 0.01
69 42 0.47
70 34 0.38
71 13 0.14
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.52
Consensus pattern (69 bp):
TCATTTTATTTTTTAACTCGTGATTTAATTTCGGTCATTTTCATTTTTTGAATCACGATTTAATC
TCGA
Found at i:5409497 original size:71 final size:72
Alignment explanation
Indices: 5409411--5409556 Score: 188
Period size: 72 Copynumber: 2.0 Consensus size: 72
5409401 TGGTTTTGAC
* * **
5409411 TTTCTGACTCATGATTTACTTTCAGTAG-TTTTCGATTTT-TAACATGTGATTTAATATCGATCA
1 TTTCCGACTCATGATTTAATGACAGTAGTTTTTC-ATTTTCTAACATGTGATTTAATATCGATCA
5409474 TTTTCATT
65 TTTTCATT
* * * * *
5409482 TTTCCGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCAT
1 TTTCCGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACATGTGATTTAATATCGATCAT
5409547 TTTCATT
66 TTTCATT
5409554 TTT
1 TTT
5409557 TGATTAACGG
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
71 27 0.42
72 37 0.58
ACGTcount: A:0.21, C:0.15, G:0.12, T:0.51
Consensus pattern (72 bp):
TTTCCGACTCATGATTTAATGACAGTAGTTTTTCATTTTCTAACATGTGATTTAATATCGATCAT
TTTCATT
Found at i:5409702 original size:104 final size:102
Alignment explanation
Indices: 5409483--5409765 Score: 259
Period size: 104 Copynumber: 2.7 Consensus size: 102
5409473 ATTTTCATTT
* * * * *
5409483 TTCC-GACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAATCTCGATCAT
1 TTCCTGACTCATGATTTAAT-CCAGTTGTTTTT-ATTTTCTGACTTGTGATTTAATTTTGGTCAT
*
5409547 TTTCATTTTTTGATTAACGGTTTAATCATGATTATTTTCA
64 TTTCA-TTTTTGATTAACGGTTTAATCATGATGATTTTCA
** * * *
5409587 TTTTTGCACTCATGGTTTAATCTCAGTTGTTTTTGTTTTCTGACTCGTGATTTAATTTTGGTCAT
1 TTCCTG-ACTCATGATTTAATC-CAGTTGTTTTTATTTTCTGACTTGTGATTTAATTTTGGTCAT
* * * *
5409652 TTTCATTTTTGATTTACGGTTTAATTCCT-ATCGCTTTT-G
64 TTTCATTTTTGATTAACGGTTTAA-TCATGAT-GATTTTCA
** * * * *
5409691 TTCCCTGACTCATGATTTAATCCTAGTCATTTTCATTTTTTGACTTGTGGTTTAA-TCTGGTTCA
1 TT-CCTGACTCATGATTTAATCC-AGTTGTTTTTATTTTCTGACTTGTGATTTAATTTTGG-TCA
5409755 TTTTCATTTTT
63 TTTTCATTTTT
5409766 TGACTCATGG
Statistics
Matches: 145, Mismatches: 26, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
103 5 0.03
104 76 0.52
105 41 0.28
106 23 0.16
ACGTcount: A:0.18, C:0.15, G:0.14, T:0.53
Consensus pattern (102 bp):
TTCCTGACTCATGATTTAATCCAGTTGTTTTTATTTTCTGACTTGTGATTTAATTTTGGTCATTT
TCATTTTTGATTAACGGTTTAATCATGATGATTTTCA
Found at i:5410289 original size:71 final size:68
Alignment explanation
Indices: 5410182--5410397 Score: 207
Period size: 71 Copynumber: 3.1 Consensus size: 68
5410172 TCTAGGTTTT
* * ** * **
5410182 TTTTCATTTTTTGACTCACGGTTTAATCCCCTTCGTTTTCATCTTCCGACTCATAGTTTAATACC
1 TTTTCATTTTTTGACTCACGATTTAATCTCAATCGTTTTCATTTTTTGACTCAT-GTTTAAT-CC
5410247 GATCA
64 GATCA
* * *
5410252 TTTTCATTTTTTTGACTTACGATTTAATCTCAGTCGTTCTTCATTTTTTGACTCGTGTTTTAATC
1 TTTTCA-TTTTTTGACTCACGATTTAATCTCAATCGTT-TTCATTTTTTGACTCATG-TTTAATC
*
5410317 ATGATCA
63 -CGATCA
* ** * *
5410324 TTTTCATTTCTTGACTCGTGATTTAAACTCAATCGTATTCATTTTTTGACTCATGGTTTAATCCC
1 TTTTCATTTTTTGACTCACGATTTAATCTCAATCGTTTTCATTTTTTGACTCAT-GTTTAAT-CC
*
5410389 AATCA
64 GATCA
5410394 TTTT
1 TTTT
5410398 TCTTTTTGAT
Statistics
Matches: 120, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
70 36 0.30
71 54 0.45
72 30 0.25
ACGTcount: A:0.21, C:0.20, G:0.10, T:0.49
Consensus pattern (68 bp):
TTTTCATTTTTTGACTCACGATTTAATCTCAATCGTTTTCATTTTTTGACTCATGTTTAATCCGA
TCA
Found at i:5410922 original size:71 final size:70
Alignment explanation
Indices: 5410780--5410911 Score: 174
Period size: 71 Copynumber: 1.9 Consensus size: 70
5410770 TTTTTTCATT
* ** *
5410780 TCTCGATCGTTTTCATTTTCTAACTCGTGGTTTAATCCCAATCATTTTCGTTTTCTGACTCAATG
1 TCTCGATCGTTTCCATTTTCTAACTAATGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATG
5410845 TTTAA
66 TTTAA
* * * **
5410850 TCTCGATCGGTTTCCTTTTTCTAACTAATTGTTTAATCTCGGTCATTTTCATTTTCTGACTC
1 TCTCGATC-GTTTCCATTTTCTAACTAATGGTTTAATCCCAATCATTTTCATTTTCTGACTC
5410912 GTGGTTTAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
70 8 0.15
71 44 0.85
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.48
Consensus pattern (70 bp):
TCTCGATCGTTTCCATTTTCTAACTAATGGTTTAATCCCAATCATTTTCATTTTCTGACTCAATG
TTTAA
Found at i:5411344 original size:71 final size:70
Alignment explanation
Indices: 5411240--5411471 Score: 193
Period size: 71 Copynumber: 3.3 Consensus size: 70
5411230 AATCCCGGTC
* * * *
5411240 ATTTTCATTT-TTTAACTCATGATTTAATTTCAGTCATTTTTTG-TTCTCTGACATGTGATTTAG
1 ATTTTCATTTCTCTGACTCATGATTT-ATTTCAGT-AGTTTTTGATT-TCTGACATGTGATTTAA
* * *
5411303 TTTCGGTG
63 TATCGATA
* * * *
5411311 GTTTTGATTT-TCTGACTTATGATTTATTCTCAGTAGTTTTTGATTTTTGACATGTGATTTAATA
1 ATTTTCATTTCTCTGACTCATGATTTATT-TCAGTAGTTTTTGATTTCTGACATGTGATTTAATA
5411375 TCGATA
65 TCGATA
** * * * *
5411381 ATTTTCATTTCTCTGACTCATGATTTAATGACGGTTGTTTTTCATTTTCTGACTTGTGATTTAAT
1 ATTTTCATTTCTCTGACTCATGATTT-ATTTCAGTAGTTTTTGA-TTTCTGACATGTGATTTAAT
* *
5411446 TTCGATT
64 ATCGATA
* *
5411453 GTTTTCATTT-TTTGACTCA
1 ATTTTCATTTCTCTGACTCA
5411472 CGGTTTACTA
Statistics
Matches: 131, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
70 38 0.29
71 59 0.45
72 34 0.26
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.53
Consensus pattern (70 bp):
ATTTTCATTTCTCTGACTCATGATTTATTTCAGTAGTTTTTGATTTCTGACATGTGATTTAATAT
CGATA
Found at i:5430079 original size:12 final size:12
Alignment explanation
Indices: 5430064--5430110 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
5430054 ATTATTATAC
5430064 AATAAATTAATT
1 AATAAATTAATT
*
5430076 AATAAATTTATT
1 AATAAATTAATT
*
5430088 -ATATAATAAATT
1 AATA-AATTAATT
5430100 AATAAA-TAATT
1 AATAAATTAATT
5430111 TTTAATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
11 7 0.24
12 19 0.66
13 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
AATAAATTAATT
Found at i:5430086 original size:28 final size:28
Alignment explanation
Indices: 5430055--5430108 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
5430045 ATAAATTTCA
*
5430055 TTATTATACAATAAATTAATTAATAAAT
1 TTATTATACAATAAATTAATAAATAAAT
*
5430083 TTATTATATAATAAATTAATAAATAA
1 TTATTATACAATAAATTAATAAATAA
5430109 TTTTTAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
TTATTATACAATAAATTAATAAATAAAT
Found at i:5430088 original size:16 final size:16
Alignment explanation
Indices: 5430055--5430099 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
5430045 ATAAATTTCA
*
5430055 TTATTATACAATAAA-
1 TTATTATATAATAAAT
5430070 TTA--AT-TAATAAAT
1 TTATTATATAATAAAT
5430083 TTATTATATAATAAAT
1 TTATTATATAATAAAT
5430099 T
1 T
5430100 AATAAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
12 6 0.24
13 5 0.20
15 5 0.20
16 9 0.36
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATTATATAATAAAT
Found at i:5430164 original size:9 final size:10
Alignment explanation
Indices: 5430143--5430168 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
5430133 AATTATTTGA
5430143 TTTTAAAATT
1 TTTTAAAATT
5430153 TTTTAAAATT
1 TTTTAAAATT
5430163 TTTTAA
1 TTTTAA
5430169 TTATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:5431838 original size:22 final size:22
Alignment explanation
Indices: 5431813--5431855 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
5431803 CTCATAAAAA
5431813 ATTTATTTAAAATTTGTTAGAG
1 ATTTATTTAAAATTTGTTAGAG
* *
5431835 ATTTATTTGAGATTTGTTAGA
1 ATTTATTTAAAATTTGTTAGA
5431856 TATTGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (22 bp):
ATTTATTTAAAATTTGTTAGAG
Found at i:5444839 original size:24 final size:25
Alignment explanation
Indices: 5444791--5444848 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
5444781 ATAAGAAATG
*
5444791 GAAAAGAAAGAAAAAGGATAAAAAA
1 GAAAAGAAAGAAAAAGAATAAAAAA
*
5444816 -AAAAGAAAGAAAAA-AATTATAAAA
1 GAAAAGAAAGAAAAAGAA-TAAAAAA
*
5444840 GGAAAGAAA
1 GAAAAGAAA
5444849 TTTAATATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 1 0.04
24 20 0.71
25 7 0.25
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (25 bp):
GAAAAGAAAGAAAAAGAATAAAAAA
Found at i:5445684 original size:22 final size:22
Alignment explanation
Indices: 5445659--5445712 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
5445649 GCTTAGGAGA
*
5445659 ATAAAATAGCCATTGAAGCTTG
1 ATAAACTAGCCATTGAAGCTTG
5445681 ATAAACTAGCCATTGAAGCTTG
1 ATAAACTAGCCATTGAAGCTTG
5445703 ATAAACTAGC
1 ATAAACTAGC
5445713 AGTTAGAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (22 bp):
ATAAACTAGCCATTGAAGCTTG
Found at i:5449855 original size:31 final size:31
Alignment explanation
Indices: 5449818--5449876 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
5449808 ACATAATTTA
* * *
5449818 AAAGTTTAGGGTGCAACTTGTGCATTTTTTG
1 AAAGTTTAAGGTGCAAATTGTACATTTTTTG
5449849 AAAGTTTAAGGTGCAAATTGTACATTTT
1 AAAGTTTAAGGTGCAAATTGTACATTTT
5449877 ATTTTTTTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (31 bp):
AAAGTTTAAGGTGCAAATTGTACATTTTTTG
Found at i:5472593 original size:23 final size:23
Alignment explanation
Indices: 5472554--5472599 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
5472544 TTACCATTTG
* *
5472554 TTATTTTATTGTTTTTTTTTTAT
1 TTATTTTATTGTGTTTTGTTTAT
5472577 TTATTATTATTG-GTTTTGTTTAT
1 TTATT-TTATTGTGTTTTGTTTAT
5472600 ATTTTTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (23 bp):
TTATTTTATTGTGTTTTGTTTAT
Found at i:5472602 original size:25 final size:23
Alignment explanation
Indices: 5472554--5472603 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 23
5472544 TTACCATTTG
* *
5472554 TTATTTTATTGTTTTTTTTTTAT
1 TTATTTTATTGTTTTGTTTATAT
5472577 TTATTATTATTGGTTTTGTTTATAT
1 TTATT-TTATT-GTTTTGTTTATAT
5472602 TT
1 TT
5472604 TTCTTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 5 0.22
25 13 0.57
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (23 bp):
TTATTTTATTGTTTTGTTTATAT
Found at i:5472836 original size:13 final size:12
Alignment explanation
Indices: 5472812--5472846 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
5472802 AATACACGAA
5472812 AAATAAAAAAAT
1 AAATAAAAAAAT
5472824 AAATAATAAAAAT
1 AAATAA-AAAAAT
*
5472837 ATATAAAAAA
1 AAATAAAAAA
5472847 TTTGAGTAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
AAATAAAAAAAT
Found at i:5472846 original size:32 final size:30
Alignment explanation
Indices: 5472788--5472847 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
5472778 AAATTTATAC
*
5472788 AAAAATAAAATAAAAATACACGAAAAATAA
1 AAAAATAAAATAAAAATACACAAAAAATAA
* *
5472818 AAAAATAAATAATAAAAATATATAAAAAAT
1 AAAAAT-AA-AATAAAAATACACAAAAAAT
5472848 TTGAGTAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.24
31 2 0.08
32 17 0.68
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (30 bp):
AAAAATAAAATAAAAATACACAAAAAATAA
Found at i:5477585 original size:2 final size:2
Alignment explanation
Indices: 5477578--5477608 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
5477568 ACATAATCTC
5477578 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5477609 AGACTCATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5485086 original size:17 final size:21
Alignment explanation
Indices: 5485042--5485086 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
5485032 ATTTTTTTGA
5485042 TTAATTGAACATTAAATATAT
1 TTAATTGAACATTAAATATAT
5485063 TTCAATT-AA-ATTAAA-AT-T
1 TT-AATTGAACATTAAATATAT
5485081 TTAATT
1 TTAATT
5485087 TTACCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.17
18 3 0.13
19 2 0.09
20 6 0.26
21 4 0.17
22 4 0.17
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATTGAACATTAAATATAT
Found at i:5489997 original size:20 final size:19
Alignment explanation
Indices: 5489932--5489996 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
5489922 ATTTATTGGT
5489932 TTTTAA-ATTTTAAAT--A
1 TTTTAATATTTTAAATAAA
*
5489948 TTTTATTATTTTAATATAAA
1 TTTTAATATTTTAA-ATAAA
* *
5489968 ATTAAATATATTTAAATAAA
1 TTTTAATAT-TTTAAATAAA
5489988 TTTTAATAT
1 TTTTAATAT
5489997 AAAATTATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.13
17 7 0.18
18 2 0.05
20 19 0.50
21 5 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAATATTTTAAATAAA
Found at i:5490047 original size:18 final size:21
Alignment explanation
Indices: 5490016--5490060 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
5490006 ACTTTTATTT
*
5490016 TATAAAAATTTTA-AAAAATA
1 TATAAAAATTTAATAAAAATA
5490036 TATAAAAA-TTAATAAAAATA
1 TATAAAAATTTAATAAAAATA
5490056 TATAA
1 TATAA
5490061 TTCAGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TATAAAAATTTAATAAAAATA
Found at i:5490369 original size:4 final size:4
Alignment explanation
Indices: 5490360--5490388 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
5490350 AATCAAATAT
5490360 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
5490389 CACCCAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:5492128 original size:7 final size:7
Alignment explanation
Indices: 5492116--5492184 Score: 50
Period size: 7 Copynumber: 9.1 Consensus size: 7
5492106 TTTTACTTTA
5492116 TTTTATT
1 TTTTATT
5492123 TTTTATT
1 TTTTATT
5492130 TTTTAATT
1 TTTT-ATT
5492138 TTTT-TT
1 TTTTATT
*
5492144 GTATTACTAT
1 -TTTTA-T-T
*
5492154 TTTTGTT
1 TTTTATT
*
5492161 ATTTTATG
1 -TTTTATT
5492169 TTTTATTT
1 TTTTA-TT
5492177 TTTTATT
1 TTTTATT
5492184 T
1 T
5492185 ATGTATGATA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
6 2 0.04
7 23 0.47
8 19 0.39
9 4 0.08
10 1 0.02
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (7 bp):
TTTTATT
Found at i:5492165 original size:24 final size:20
Alignment explanation
Indices: 5492151--5492188 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5492141 TTTGTATTAC
5492151 TATTTTTGTTATTTTATGTTT
1 TATTTTT-TTATTTTATGTTT
5492172 TATTTTTTTA-TTTATGT
1 TATTTTTTTATTTTATGT
5492189 ATGATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 3 0.18
21 7 0.41
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (20 bp):
TATTTTTTTATTTTATGTTT
Found at i:5492471 original size:23 final size:23
Alignment explanation
Indices: 5492445--5492489 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
5492435 ATTAAAAAGT
5492445 ATAAAAAAATAAATAATAAATTA
1 ATAAAAAAATAAATAATAAATTA
* ** *
5492468 ATAATATTATTAATAATAAATT
1 ATAAAAAAATAAATAATAAATT
5492490 TTCGTTAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAAAAAAATAAATAATAAATTA
Found at i:5492524 original size:14 final size:15
Alignment explanation
Indices: 5492494--5492527 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
5492484 TAAATTTTCG
5492494 TTAAAAAGTTCTTTT
1 TTAAAAAGTTCTTTT
*
5492509 TTAAATAGTT-TTTT
1 TTAAAAAGTTCTTTT
5492523 TTAAA
1 TTAAA
5492528 CTATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (15 bp):
TTAAAAAGTTCTTTT
Found at i:5492676 original size:30 final size:30
Alignment explanation
Indices: 5492635--5492711 Score: 106
Period size: 30 Copynumber: 2.6 Consensus size: 30
5492625 TTTAAACCTC
*
5492635 AAAAACAAAACC-CTAAA-CCTTCATAACCCT
1 AAAAACTAAACCAC-AAACCCTTCA-AACCCT
5492665 AAAAACTAAACCACAAACCCTTCAAACCCT
1 AAAAACTAAACCACAAACCCTTCAAACCCT
5492695 -AAAACTAAACCACAAAC
1 AAAAACTAAACCACAAAC
5492712 TCCTAAATCC
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
29 17 0.39
30 20 0.45
31 7 0.16
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (30 bp):
AAAAACTAAACCACAAACCCTTCAAACCCT
Found at i:5492708 original size:29 final size:29
Alignment explanation
Indices: 5492636--5492727 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 29
5492626 TTAAACCTCA
*
5492636 AAAACAAAACC-CTAAA-CCTTCATAACCCT
1 AAAACTAAACCAC-AAACCCTTCA-AACCCT
5492665 AAAAACTAAACCACAAACCCTTCAAACCCT
1 -AAAACTAAACCACAAACCCTTCAAACCCT
*
5492695 AAAACTAAACCACAAACTCC-T-AAATCCT
1 AAAACTAAACCACAAAC-CCTTCAAACCCT
5492723 AAAAC
1 AAAAC
5492728 CACAACCTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
28 11 0.19
29 18 0.32
30 21 0.37
31 7 0.12
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (29 bp):
AAAACTAAACCACAAACCCTTCAAACCCT
Found at i:5492734 original size:29 final size:29
Alignment explanation
Indices: 5492636--5492734 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
5492626 TTAAACCTCA
*
5492636 AAAACAAAACC-CTAAA-CCTTCATAACCCT
1 AAAACCAAACCAC-AAACCCTTCA-AACCCT
*
5492665 AAAAACTAAACCACAAACCCTTCAAACCCT
1 -AAAACCAAACCACAAACCCTTCAAACCCT
* *
5492695 AAAACTAAACCACAAACTCC-T-AAATCCT
1 AAAACCAAACCACAAAC-CCTTCAAACCCT
5492723 AAAACCACAACC
1 AAAACCA-AACC
5492735 TTAAAATCCA
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
28 12 0.19
29 22 0.35
30 21 0.34
31 7 0.11
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (29 bp):
AAAACCAAACCACAAACCCTTCAAACCCT
Found at i:5494960 original size:24 final size:29
Alignment explanation
Indices: 5494887--5494960 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
5494877 TTATTAAGTC
5494887 AGCATAACACATGCATGGCATCCCATATA
1 AGCATAACACATGCATGGCATCCCATATA
5494916 AGCATAACACATGCATGGCATCCCATATA
1 AGCATAACACATGCATGGCATCCCATATA
* *
5494945 AGCATATCTCATGCAT
1 AGCATAACACATGCAT
5494961 ATAGTAGGTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (29 bp):
AGCATAACACATGCATGGCATCCCATATA
Found at i:5501440 original size:21 final size:21
Alignment explanation
Indices: 5501413--5501460 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
5501403 AGATTTTGAT
*
5501413 TTTTAAGTCCT-CAGCCATAA
1 TTTTAAGACCTCCAGCCATAA
*
5501433 TCTTTAAGACCTCCAGGCATAA
1 T-TTTAAGACCTCCAGCCATAA
5501455 TTTTAA
1 TTTTAA
5501461 TTCGCGGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 14 0.58
22 9 0.38
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.35
Consensus pattern (21 bp):
TTTTAAGACCTCCAGCCATAA
Found at i:5501794 original size:132 final size:132
Alignment explanation
Indices: 5501409--5501847 Score: 453
Period size: 132 Copynumber: 3.3 Consensus size: 132
5501399 TCAAAGATTT
* * * *
5501409 TGATTTTTAAGTCC-TCAGCCATAATCTTTAAGACCTCCAGGCATAATTTTAATTCGCGGTGTTG
1 TGATTTTTAAGTCCTTCAGACATAATCTTTAAGACCTCCAGGCATAATTTTGATTTGAGGTGTTG
* * * * * * * **
5501473 TCTTGATCAATTCTTTATTTTTTAACTTACGGTGTTGTCTCAGTCGATTCTATAAGACCT-TCGG
66 TCTCGATCGATTCTTTATTTTTTGACCTACGATGTTTTTTCAGTCGATTCTATAAGACCTCTAAG
5501537 ACA
131 -CA
* ** * * * *
5501540 TGATTTCTAAGTCCTTTGGACATAATCTTTATGACCACCAAGCATAATTTTGA-TT-ACGATGTT
1 TGATTTTTAAGTCCTTCAGACATAATCTTTAAGACCTCCAGGCATAATTTTGATTTGA-GGTGTT
* *
5501603 GTCTCGATCGATTCTTTATTTTTTGACCTACGATGTTCTCTT-AGTCGATTCTTTAAGACCTCTA
65 GTCTCGATCGATTCTTTATTTTTTGACCTACGATGTT-TTTTCAGTCGATTCTATAAGACCTCTA
*
5501667 TGCA
129 AGCA
* ** *
5501671 TGATTTTTAAGTCCTTCA-AGCATAATCTTTGAGACCTCTGGGCATAATTTCGATTTGAGGTGTT
1 TGATTTTTAAGTCCTTCAGA-CATAATCTTTAAGACCTCCAGGCATAATTTTGATTTGAGGTGTT
* ** *
5501735 GTCCCGATCGATT-TCTTATTTTTTGACCTGTGATATTTTTTCAGTCGATTCTATAAGACCTCTA
65 GTCTCGATCGATTCT-TTATTTTTTGACCTACGATGTTTTTTCAGTCGATTCTATAAGACCTCTA
5501799 AGCA
129 AGCA
* * * *
5501803 TAATTTTTAAGTCC-TCCGAGCATAATCTCTAAGACCTCGAGGCAT
1 TGATTTTTAAGTCCTTCAGA-CATAATCTTTAAGACCTCCAGGCAT
5501848 GATCTTTAAA
Statistics
Matches: 252, Mismatches: 46, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
130 1 0.00
131 118 0.47
132 132 0.52
133 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (132 bp):
TGATTTTTAAGTCCTTCAGACATAATCTTTAAGACCTCCAGGCATAATTTTGATTTGAGGTGTTG
TCTCGATCGATTCTTTATTTTTTGACCTACGATGTTTTTTCAGTCGATTCTATAAGACCTCTAAG
CA
Found at i:5501847 original size:22 final size:21
Alignment explanation
Indices: 5501788--5501861 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 21
5501778 GTCGATTCTA
* *
5501788 TAAGACCTCTAAGCATAATTTT
1 TAAGACCTC-GAGCATAATCTT
* *
5501810 TAAGTCCTCCGAGCATAATCTC
1 TAAGACCT-CGAGCATAATCTT
*
5501832 TAAGACCTCGAGGCATGATCTT
1 TAAGACCTCGA-GCATAATCTT
*
5501854 TAAAACCT
1 TAAGACCT
5501862 TCAGATATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 3 0.07
22 38 0.90
23 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (21 bp):
TAAGACCTCGAGCATAATCTT
Found at i:5502034 original size:110 final size:110
Alignment explanation
Indices: 5501832--5502040 Score: 294
Period size: 110 Copynumber: 1.9 Consensus size: 110
5501822 GCATAATCTC
* *
5501832 TAAGACCTCGAGGCATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGGTGTTATTCCAAT
1 TAAGACCTCGAGGCATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAAT
* ** *
5501897 CAATTCTTTATTTTTTGACTTAAGGTGTTATCCCAATTGATTCTG
66 CAATTCCTTATTTTTCAACATAAGGTGTTATCCCAATTGATTCTG
* * * *
5501942 TAAGACCTCCGA-GCATGATCTTTAAAACCTTCGGGTATAATTTTGATTTACGATGTTATCCCAA
1 TAAGACCT-CGAGGCATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAA
* *
5502006 TCGATTCCTTATTTTTCAACATACGGTGTTATCCC
65 TCAATTCCTTATTTTTCAACATAAGGTGTTATCCC
5502041 TGTCGATTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 83 0.97
111 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (110 bp):
TAAGACCTCGAGGCATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAAT
CAATTCCTTATTTTTCAACATAAGGTGTTATCCCAATTGATTCTG
Found at i:5502069 original size:110 final size:110
Alignment explanation
Indices: 5501845--5502070 Score: 272
Period size: 110 Copynumber: 2.1 Consensus size: 110
5501835 GACCTCGAGG
* * *
5501845 CATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGGTGTTATTCCAATCAATTCTTTATTT
1 CATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAATCAATTCCTTATTT
** * * * *
5501910 TTTGACTTAAGGTGTTATCCCAATTGATTCTGTAAGACCTCCGAG
66 TTCAACATAAGGTGTTATCCCAATCGATTCTGTAAGACCTCCAAA
* * * * *
5501955 CATGATCTTTAAAACCTTCGGGTATAATTTTGATTTACGATGTTATCCCAATCGATTCCTTATTT
1 CATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAATCAATTCCTTATTT
* ** * * *
5502020 TTCAACATACGGTGTTATCCCTGTCGATTTTGTAAGTCCTTCAAA
66 TTCAACATAAGGTGTTATCCCAATCGATTCTGTAAGACCTCCAAA
5502065 CATGAT
1 CATGAT
5502071 TTCTAAGACT
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
110 96 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (110 bp):
CATGATCTTTAAAACCTTCAGATATAATTTCGATTCACGATGTTATCCCAATCAATTCCTTATTT
TTCAACATAAGGTGTTATCCCAATCGATTCTGTAAGACCTCCAAA
Found at i:5502187 original size:37 final size:37
Alignment explanation
Indices: 5502124--5502233 Score: 105
Period size: 37 Copynumber: 3.0 Consensus size: 37
5502114 TTTAAATTCG
* * *
5502124 CGGTGTTGTCTCGATCGATT-TCTTATTTTTTGACTTA
1 CGGTGTAGTCCCGATCGATTCT-TTATTTTTCGACTTA
* * ** *
5502161 CGGTGTAGTCCCGGTTGATTCTTTATTCATCGACTCA
1 CGGTGTAGTCCCGATCGATTCTTTATTTTTCGACTTA
* **
5502198 CGGTGTTGTCTTGATCGATTCTTTATTTTTCGACTT
1 CGGTGTAGTCCCGATCGATTCTTTATTTTTCGACTT
5502234 GCGACGTCAT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
37 55 0.98
38 1 0.02
ACGTcount: A:0.14, C:0.19, G:0.20, T:0.47
Consensus pattern (37 bp):
CGGTGTAGTCCCGATCGATTCTTTATTTTTCGACTTA
Found at i:5502481 original size:17 final size:17
Alignment explanation
Indices: 5502450--5502501 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
5502440 TCTGTTTATC
* *
5502450 AATATTAAACTATTAAT
1 AATAATAAAATATTAAT
*
5502467 AATAATAGAAA-ATTATT
1 AATAATA-AAATATTAAT
*
5502484 GATAATAAAATATTAAT
1 AATAATAAAATATTAAT
5502501 A
1 A
5502502 TTAGTTTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
16 3 0.11
17 22 0.81
18 2 0.07
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.37
Consensus pattern (17 bp):
AATAATAAAATATTAAT
Found at i:5503467 original size:8 final size:8
Alignment explanation
Indices: 5503439--5503530 Score: 67
Period size: 8 Copynumber: 10.6 Consensus size: 8
5503429 CCGGTTCAGG
5503439 TATTTTTT
1 TATTTTTT
5503447 TACTTTATTT
1 TA-TTT-TTT
5503457 TATTTTTT
1 TATTTTTT
5503465 TATTTTTT
1 TATTTTTT
* *
5503473 GAATTTTT
1 TATTTTTT
5503481 TATTTTTT
1 TATTTTTT
* * **
5503489 TGTATTAC
1 TATTTTTT
5503497 TATTTTTGT
1 TATTTTT-T
5503506 TATTTTATGCTT
1 TA-TTT-T--TT
5503518 TATTTTTT
1 TATTTTTT
5503526 TATTT
1 TATTT
5503531 ATGCATGATA
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
8 40 0.62
9 8 0.12
10 9 0.14
11 4 0.06
12 3 0.05
13 1 0.02
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.76
Consensus pattern (8 bp):
TATTTTTT
Found at i:5504008 original size:30 final size:30
Alignment explanation
Indices: 5503973--5504034 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
5503963 AGACCCTAAA
* * *
5503973 CTCTAAACCTTAAAAACAAAATTCTAAACC
1 CTCTAAACCCTAAAAACAAAACTCCAAACC
*
5504003 CTCTAAACCCTAAAAACTAAACTCCAAACC
1 CTCTAAACCCTAAAAACAAAACTCCAAACC
5504033 CT
1 CT
5504035 AAAACTAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (30 bp):
CTCTAAACCCTAAAAACAAAACTCCAAACC
Found at i:5505061 original size:23 final size:23
Alignment explanation
Indices: 5505030--5505078 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
5505020 CTCAATTTGA
5505030 TTTTTATAAA-TCAAAATTTATT
1 TTTTTATAAATTCAAAATTTATT
**
5505052 TTTTTGATAAATTTTAAATTTATT
1 TTTTT-ATAAATTCAAAATTTATT
5505076 TTT
1 TTT
5505079 ATAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 5 0.22
23 5 0.22
24 13 0.57
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TTTTTATAAATTCAAAATTTATT
Found at i:5505084 original size:20 final size:20
Alignment explanation
Indices: 5505023--5505087 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 20
5505013 TCTTAGACTC
* **
5505023 AATTTGATTTTTATAAATCAA
1 AATTT-ATTTTTATAATTTTA
5505044 AATTTATTTTTTTGATAAATTTTA
1 AATTTA--TTTTT-AT-AATTTTA
5505068 AATTTATTTTTATAATTTTA
1 AATTTATTTTTATAATTTTA
5505088 TTAAAAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
20 8 0.22
21 7 0.19
22 10 0.27
23 2 0.05
24 10 0.27
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (20 bp):
AATTTATTTTTATAATTTTA
Found at i:5508050 original size:23 final size:21
Alignment explanation
Indices: 5508007--5508069 Score: 54
Period size: 23 Copynumber: 2.7 Consensus size: 21
5507997 AATATATTAA
5508007 AAAATATATTAATTCTAATTAATTT
1 AAAATA-A-TAATT-TAATT-ATTT
5508032 AAAATAATAATTTATATTATTT
1 AAAATAATAATTTA-ATTATTT
*
5508054 AATAAAAATATATTTA
1 AA-AATAATA-ATTTA
5508070 CTAAATATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
22 8 0.24
23 14 0.41
24 6 0.18
25 6 0.18
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
AAAATAATAATTTAATTATTT
Found at i:5510183 original size:25 final size:23
Alignment explanation
Indices: 5510152--5510199 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
5510142 CAAAGTCATA
*
5510152 TTTTTAAGTAGATATATATAATTAT
1 TTTTTAAGTAAATA-AT-TAATTAT
*
5510177 TTTTTAATTAAATAATTAATTAT
1 TTTTTAAGTAAATAATTAATTAT
5510200 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 2 0.10
25 12 0.57
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTTAAGTAAATAATTAATTAT
Found at i:5512216 original size:20 final size:20
Alignment explanation
Indices: 5512191--5512228 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5512181 AGTTTAATTA
* *
5512191 TAAAAAATTTTAAAATATAC
1 TAAAAAAATTAAAAATATAC
5512211 TAAAAAAATTAAAAATAT
1 TAAAAAAATTAAAAATAT
5512229 CAAGGTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
TAAAAAAATTAAAAATATAC
Found at i:5513373 original size:24 final size:25
Alignment explanation
Indices: 5513330--5513389 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
5513320 AATGGAGCAT
* *
5513330 TTTTTAT-TTTTTATATTATATCTA
1 TTTTTATATTTATATATTATATATA
5513354 TTTTTATATTTATATA-TATATATA
1 TTTTTATATTTATATATTATATATA
*
5513378 -TTTTAAATTTAT
1 TTTTTATATTTAT
5513390 TCATATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.34
24 14 0.44
25 7 0.22
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTTATATTTATATATTATATATA
Found at i:5513387 original size:23 final size:23
Alignment explanation
Indices: 5513339--5513389 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
5513329 TTTTTTATTT
* *
5513339 TTTATATTATATCTATTTTTATA
1 TTTATATTATATATATTTTTAAA
5513362 TTTATA-TATATATATATTTTAAA
1 TTTATATTATATATAT-TTTTAAA
5513385 TTTAT
1 TTTAT
5513390 TCATATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTATATTATATATATTTTTAAA
Found at i:5513395 original size:23 final size:22
Alignment explanation
Indices: 5513343--5513404 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
5513333 TTATTTTTTA
* *
5513343 TATTATATCTAT-TTTTATATT
1 TATTATATATATATTTTAAATT
5513364 TATATATATATATATTTTAAATT
1 TAT-TATATATATATTTTAAATT
* *
5513387 TATTCATATTTTTATTTT
1 TATT-ATATATATATTTT
5513405 TGTGAGCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 3 0.09
22 9 0.26
23 22 0.65
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATATATATATTTTAAATT
Found at i:5513538 original size:18 final size:17
Alignment explanation
Indices: 5513482--5513538 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
5513472 TTTACACATT
*
5513482 TATATAATTTTTTATAAA
1 TATATAA-TTTTAATAAA
*
5513500 TATATATTTTTAAATACAAA
1 TATATAATTTT-AAT--AAA
5513520 TATATTAATTTTAATAAA
1 TATA-TAATTTTAATAAA
5513538 T
1 T
5513539 TTAAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
17 4 0.12
18 12 0.38
20 10 0.31
21 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TATATAATTTTAATAAA
Found at i:5513582 original size:19 final size:21
Alignment explanation
Indices: 5513546--5513584 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5513536 AATTTAAAAT
*
5513546 AAAATTTATATTATTAAATAA
1 AAAATTAATATTATTAAATAA
5513567 AAAATTAAT-TTA-TAAATA
1 AAAATTAATATTATTAAATA
5513585 TATAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 3 0.18
21 8 0.47
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATTAATATTATTAAATAA
Found at i:5522438 original size:41 final size:41
Alignment explanation
Indices: 5522345--5522442 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 41
5522335 GTGATTTTTT
* *
5522345 AAAATCATTAAAAATAATCATTTAACATTTATTAAAATAAATA
1 AAAATCATT-AAAATAATCATGTAACA-TTATTAAAACAAATA
5522388 AAAAT--TTAAATATAAT-ATGT-ACA-TATTAAAACAAATAA
1 AAAATCATTAAA-ATAATCATGTAACATTATTAAAACAAAT-A
5522426 AATAATCATTAAAATAA
1 AA-AATCATTAAAATAA
5522443 ATAAAAACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
37 12 0.25
38 3 0.06
39 6 0.12
40 10 0.21
41 12 0.25
43 5 0.10
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (41 bp):
AAAATCATTAAAATAATCATGTAACATTATTAAAACAAATA
Found at i:5522482 original size:58 final size:59
Alignment explanation
Indices: 5522375--5522487 Score: 142
Period size: 58 Copynumber: 1.9 Consensus size: 59
5522365 TTTAACATTT
* * * *
5522375 ATTAAAATAAATAAAAATTTAAATATAATATGTACATATTAAAACAAATA-AAATAATC
1 ATTAAAATAAATAAAAACTTAAATACAATATATACATATAAAAACAAATATAAATAATC
*
5522433 ATTAAAATAAATAAAAACTTACAA-ACAATATATACAT-TAAAAAATAAATATAAAT
1 ATTAAAATAAATAAAAACTTA-AATACAATATATACATAT-AAAAACAAATATAAAT
5522488 CTAAATTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 1 0.02
58 40 0.85
59 6 0.13
ACGTcount: A:0.64, C:0.06, G:0.01, T:0.29
Consensus pattern (59 bp):
ATTAAAATAAATAAAAACTTAAATACAATATATACATATAAAAACAAATATAAATAATC
Found at i:5523273 original size:58 final size:59
Alignment explanation
Indices: 5523206--5523320 Score: 196
Period size: 58 Copynumber: 2.0 Consensus size: 59
5523196 TAAAATGATG
* *
5523206 ATAATTTTTTTTATAATTTTATTTTTTTAATTAGATATAAATTAAATATAATATAAATA
1 ATAATTTTTTTTATAATTTTATTTTTTTAATTAAATATAAATCAAATATAATATAAATA
*
5523265 ATAA-TTTTTTTGTAATTTTATTTTTTTAATTAAATATAAATCAAATATAATATAAA
1 ATAATTTTTTTTATAATTTTATTTTTTTAATTAAATATAAATCAAATATAATATAAA
5523321 ATTATTATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
58 49 0.92
59 4 0.08
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (59 bp):
ATAATTTTTTTTATAATTTTATTTTTTTAATTAAATATAAATCAAATATAATATAAATA
Found at i:5527955 original size:19 final size:19
Alignment explanation
Indices: 5527931--5527973 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
5527921 AAACACATTC
5527931 AATCATTAAATTATCTTTA
1 AATCATTAAATTATCTTTA
5527950 AATCATTAAATTATCTTTA
1 AATCATTAAATTATCTTTA
5527969 AATCA
1 AATCA
5527974 AGATAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (19 bp):
AATCATTAAATTATCTTTA
Found at i:5529318 original size:2 final size:2
Alignment explanation
Indices: 5529311--5529357 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
5529301 TAAAAGATTT
*
5529311 TA TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5529353 TA TA T
1 TA TA T
5529358 GATCGTATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5536426 original size:27 final size:27
Alignment explanation
Indices: 5536385--5536461 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
5536375 CTCTTTGCAG
* *
5536385 TTTG-CTCCCCTTTAGTCTTTTGCATC
1 TTTGACTCCCTTTTAGTCTCTTGCATC
*
5536411 TTTGACTCCCTTTTAGTCTCTTACATC
1 TTTGACTCCCTTTTAGTCTCTTGCATC
*
5536438 TTTGACTCCCTCTTAGTCTCTTGC
1 TTTGACTCCCTTTTAGTCTCTTGC
5536462 TCGACTACTT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.10, C:0.31, G:0.10, T:0.48
Consensus pattern (27 bp):
TTTGACTCCCTTTTAGTCTCTTGCATC
Found at i:5537631 original size:26 final size:29
Alignment explanation
Indices: 5537600--5537657 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
5537590 TTATTGTTTC
*
5537600 ATTATTTGAATATAATTTTATT-TTTATTT
1 ATTATTTGAATATAATTTAATTATTTA-TT
*
5537629 ATTATTTTAATATAATTTAATTATTTATT
1 ATTATTTGAATATAATTTAATTATTTATT
5537658 TTTTATTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
ATTATTTGAATATAATTTAATTATTTATT
Found at i:5537634 original size:29 final size:29
Alignment explanation
Indices: 5537586--5537664 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 29
5537576 TGACCACTAC
* *
5537586 TTTATTATTGTTTCATTATTTGAATATAAT
1 TTTATTTTTATTT-ATTATTTGAATATAAT
*
5537616 TTTATTTTTATTTATTATTTTAATATAAT
1 TTTATTTTTATTTATTATTTGAATATAAT
* *
5537645 TTAATTATTTATTTTTTATT
1 TTTATT-TTTATTTATTATT
5537665 GTTTGGATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
29 20 0.47
30 23 0.53
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (29 bp):
TTTATTTTTATTTATTATTTGAATATAAT
Found at i:5544747 original size:26 final size:28
Alignment explanation
Indices: 5544700--5544757 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
5544690 TGAAAAAAAT
**
5544700 TATTTTTAATTGATAGGATT-AAACTTA
1 TATTTTTAATTGATACCATTAAAACTTA
* *
5544727 TATTTTTAATT-ATACCCTTAAAATTTA
1 TATTTTTAATTGATACCATTAAAACTTA
5544754 TATT
1 TATT
5544758 AATAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.52
Consensus pattern (28 bp):
TATTTTTAATTGATACCATTAAAACTTA
Found at i:5550023 original size:27 final size:26
Alignment explanation
Indices: 5549992--5550048 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 26
5549982 TAACGTGACA
5549992 TTTTATATATTTTTT-AAGTTTTTAATT
1 TTTTA-AT-TTTTTTAAAGTTTTTAATT
5550019 TTTTAATTTTTTTACAAGTTTTTAATT
1 TTTTAATTTTTTTA-AAGTTTTTAATT
5550046 TTT
1 TTT
5550049 GTTTAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.21
26 2 0.07
27 20 0.71
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTTAATTTTTTTAAAGTTTTTAATT
Done.