Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 41 of 109
Found at i:6619609 original size:61 final size:58
Alignment explanation
Indices: 6619330--6619663 Score: 275
Period size: 61 Copynumber: 5.6 Consensus size: 58
6619320 GCTTTTGTAT
* * * * * *
6619330 AAGAAAATTTGATATTTTCAACTTTTCCT-TAAAATGTTTTTCTTGATAATCTTTATTTT-T
1 AAGAAAA-TTGATACTTTCAACTTTCCCTCAAAAATATTTTT-TAGA-AAT-TTTATTTTCA
* * * *
6619390 AAGAAAAATTGGTACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTAATTTC-
1 AAG-AAAATTGATACTTTCAACTTTCCCTCAAAAATA-TTTTTTAGAAATTTTATTTTCA
** * *
6619449 AAGAAAAATTGATACTTTCAACTTTTTCT-TAGAAT-TTTTTTA-ACAATTTTATTTTTCA
1 AAG-AAAATTGATACTTTCAACTTTCCCTCAAAAATATTTTTTAGA-AATTTTA-TTTTCA
* * * *
6619507 AGAAAAAATTGATACTTTCAATTTTTTCCTCAAAAATATTTTTTAGAAATCTTTATCTTCA
1 A-AGAAAATTGATACTTTCAA-CTTTCCCTCAAAAATATTTTTTAGAAAT-TTTATTTTCA
* *
6619568 AAGGAAATTGATACTTTCAACTTTCCCTCAAAAAATAATTTTTTTGAAATTTTTATTTTCA
1 AAGAAAATTGATACTTTCAACTTTCCCTC-AAAAAT-ATTTTTTAGAAA-TTTTATTTTCA
* * * *
6619629 AAGGAAATTGAAACTTTCAACTTTCCTTTAAAAAT
1 AAGAAAATTGATACTTTCAACTTTCCCTCAAAAAT
6619664 GTATATATTA
Statistics
Matches: 231, Mismatches: 27, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
55 1 0.00
56 14 0.06
57 4 0.02
58 22 0.10
59 48 0.21
60 58 0.25
61 73 0.32
62 11 0.05
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (58 bp):
AAGAAAATTGATACTTTCAACTTTCCCTCAAAAATATTTTTTAGAAATTTTATTTTCA
Found at i:6619679 original size:61 final size:61
Alignment explanation
Indices: 6619512--6619687 Score: 169
Period size: 61 Copynumber: 2.9 Consensus size: 61
6619502 TTTCAAGAAA
* * * * * * * *
6619512 AAATTGATACTTTCAATTTTTTCCTC-AAAAAT-ATTTTTTAGAAATCTTTATCTTCAAAGG
1 AAATTGAAACTTTCAA-CTTTCCCTCAAAAAATAATATATTAAAAATTTTTATTTTCAAAGG
* * * **
6619572 AAATTGATACTTTCAACTTTCCCTCAAAAAATAATTTTTTTGAAATTTTTATTTTCAAAGG
1 AAATTGAAACTTTCAACTTTCCCTCAAAAAATAATATATTAAAAATTTTTATTTTCAAAGG
** *
6619633 AAATTGAAACTTTCAACTTT-CCTTTAAAAATGTATATATTAAAAATTTTTATTTT
1 AAATTGAAACTTTCAACTTTCCCTCAAAAAAT-AATATATTAAAAATTTTTATTTT
6619688 TGAAAAGATT
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
59 7 0.07
60 31 0.31
61 62 0.62
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (61 bp):
AAATTGAAACTTTCAACTTTCCCTCAAAAAATAATATATTAAAAATTTTTATTTTCAAAGG
Found at i:6620332 original size:24 final size:26
Alignment explanation
Indices: 6620273--6620337 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 26
6620263 CGAAATCTAG
6620273 AAAATTTCCAAAAATTTCCTAGAAAA
1 AAAATTTCCAAAAATTTCCTAGAAAA
*
6620299 AAAA-TACCAAAAATTT-C-A-AAAA
1 AAAATTTCCAAAAATTTCCTAGAAAA
6620321 AAAATTTTCCAAAAATT
1 AAAA-TTTCCAAAAATT
6620338 CTAACACCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.23
23 1 0.03
24 11 0.31
25 11 0.31
26 4 0.11
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (26 bp):
AAAATTTCCAAAAATTTCCTAGAAAA
Found at i:6629560 original size:16 final size:17
Alignment explanation
Indices: 6629513--6629553 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
6629503 ATAAAATGAA
* *
6629513 TAATTTTATAT-ATTTT
1 TAATTATATATAAATTT
6629529 TAATTATATATAAATTT
1 TAATTATATATAAATTT
6629546 T-ATTATAT
1 TAATTATAT
6629554 TTTAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TAATTATATATAAATTT
Found at i:6629668 original size:23 final size:26
Alignment explanation
Indices: 6629640--6629695 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
6629630 AATTGATCAA
*
6629640 AATTAATATAAT-AA-TT-ATTAATT
1 AATTAATATAATCAATTTAATCAATT
*
6629663 AATTAAATTTAATCAATTTAATCAATT
1 AATT-AATATAATCAATTTAATCAATT
6629690 AATTAA
1 AATTAA
6629696 ATTAAAACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 4 0.15
24 7 0.26
25 2 0.07
26 4 0.15
27 10 0.37
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (26 bp):
AATTAATATAATCAATTTAATCAATT
Found at i:6638212 original size:6 final size:6
Alignment explanation
Indices: 6638197--6638241 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
6638187 TTGGCTTTAT
* *
6638197 TATTCG TATTCC TATTCC TATTCC TATTCC TATTCT TATTCC TAT
1 TATTCC TATTCC TATTCC TATTCC TATTCC TATTCC TATTCC TAT
6638242 ACCTGTATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.18, C:0.27, G:0.02, T:0.53
Consensus pattern (6 bp):
TATTCC
Found at i:6638778 original size:3 final size:3
Alignment explanation
Indices: 6638770--6638810 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
6638760 CAATGTAACA
6638770 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
6638811 AAGCAAAGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6640230 original size:15 final size:15
Alignment explanation
Indices: 6640212--6640260 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
6640202 TTAAATCATA
6640212 TTATTTTTATATTTT
1 TTATTTTTATATTTT
* *
6640227 TTATTTGTATAATTT
1 TTATTTTTATATTTT
*
6640242 TTA-TGTTATATTATT
1 TTATTTTTATATT-TT
6640257 TTAT
1 TTAT
6640261 CATATTTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 6 0.22
15 21 0.78
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (15 bp):
TTATTTTTATATTTT
Found at i:6643149 original size:21 final size:21
Alignment explanation
Indices: 6643109--6643159 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
6643099 TAATTTTTTT
* *
6643109 AAATAAGATTATTTGATAAAT
1 AAATAAAATTATTTGATAAAA
*
6643130 AACTAAAATTATTT-ATTAAAA
1 AAATAAAATTATTTGA-TAAAA
6643151 AAATAAAAT
1 AAATAAAAT
6643160 CTATATTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 1 0.04
21 24 0.96
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (21 bp):
AAATAAAATTATTTGATAAAA
Found at i:6650219 original size:24 final size:25
Alignment explanation
Indices: 6650175--6650225 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
6650165 CTTTCTTTAT
* *
6650175 ATTTGATATATTTTTAGTATATAAA
1 ATTTGATATATTTATAATATATAAA
*
6650200 ATTT-ATATATTTATAATATATTAA
1 ATTTGATATATTTATAATATATAAA
6650224 AT
1 AT
6650226 AATAATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
ATTTGATATATTTATAATATATAAA
Found at i:6650442 original size:28 final size:31
Alignment explanation
Indices: 6650410--6650469 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 31
6650400 AGTTAAAATT
*
6650410 TTAATAAAAATTA-AATATAT-A-TTTTATA
1 TTAATAAAAATTATAATACATAATTTTTATA
*
6650438 TTAATATAAATTATAATACATAATTTTTATA
1 TTAATAAAAATTATAATACATAATTTTTATA
6650469 T
1 T
6650470 AAAATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 12 0.44
29 6 0.22
30 1 0.04
31 8 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (31 bp):
TTAATAAAAATTATAATACATAATTTTTATA
Found at i:6650688 original size:23 final size:23
Alignment explanation
Indices: 6650662--6650743 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 23
6650652 TTTTAATTAA
* *
6650662 ATTAAATGAATTTATTTATAAAT
1 ATTAAATAAATATATTTATAAAT
**
6650685 ATTAAATAAATATATTTACGAAT
1 ATTAAATAAATATATTTATAAAT
**
6650708 ATATATAACGAATATATTTATAAAT
1 AT-TA-AATAAATATATTTATAAAT
*
6650733 AATAAATAAAT
1 ATTAAATAAAT
6650744 TATAATCAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
23 26 0.57
24 4 0.09
25 16 0.35
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
ATTAAATAAATATATTTATAAAT
Found at i:6650801 original size:20 final size:21
Alignment explanation
Indices: 6650763--6650802 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
6650753 ATAAATTTAA
*
6650763 ATAAACAAACTCTAAATAAAC
1 ATAAACAAACTCCAAATAAAC
6650784 ATAAACAAA-TCCAAATAAA
1 ATAAACAAACTCCAAATAAA
6650803 TCTATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.65, C:0.17, G:0.00, T:0.17
Consensus pattern (21 bp):
ATAAACAAACTCCAAATAAAC
Found at i:6652118 original size:21 final size:20
Alignment explanation
Indices: 6652068--6652118 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
6652058 ATTAATTTTT
*
6652068 ATATATTTATTTTAAAATTA
1 ATATATTTATTATAAAATTA
*
6652088 ATATTTTTTATTAATAAAA-TA
1 ATA-TATTTATT-ATAAAATTA
6652109 ATATCATTTA
1 ATAT-ATTTA
6652119 ATTTATTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 4 0.16
21 16 0.64
22 5 0.20
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATTTATTATAAAATTA
Found at i:6655608 original size:45 final size:44
Alignment explanation
Indices: 6655536--6655620 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 44
6655526 AAAAAAAGGA
*
6655536 GAAATAGAATAGAATAGAATAATTATT-ATAATGTTTGGTTTATT
1 GAAATAAAATAGAATAGAATAATTATTAAT-ATGTTTGGTTTATT
*
6655580 GAAATAAAATATAATAAGAATTAA-TATTAATATGTTTGGTT
1 GAAATAAAATAGAAT-AGAA-TAATTATTAATATGTTTGGTT
6655621 AATTCAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
44 13 0.36
45 18 0.50
46 5 0.14
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (44 bp):
GAAATAAAATAGAATAGAATAATTATTAATATGTTTGGTTTATT
Found at i:6655705 original size:27 final size:31
Alignment explanation
Indices: 6655675--6655740 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 31
6655665 TTTTTATTAA
*
6655675 ATTAATTATAATTTATT-AT-AAAA-TAA-T
1 ATTAATTATAATTAATTAATAAAAAGTAATT
6655702 ATTAATTATAATTAATTAATAAAAAGTAATT
1 ATTAATTATAATTAATTAATAAAAAGTAATT
6655733 ATTAATTA
1 ATTAATTA
6655741 ACTCAATTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 16 0.47
28 2 0.06
29 4 0.12
30 3 0.09
31 9 0.26
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (31 bp):
ATTAATTATAATTAATTAATAAAAAGTAATT
Found at i:6655717 original size:10 final size:10
Alignment explanation
Indices: 6655670--6655719 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
6655660 TTTATTTTTT
6655670 ATTA-AATTA
1 ATTATAATTA
*
6655679 ATTATAATTT
1 ATTATAATTA
6655689 ATTATAA--A
1 ATTATAATTA
*
6655697 ATAAT-ATTA
1 ATTATAATTA
6655706 ATTATAATTA
1 ATTATAATTA
6655716 ATTA
1 ATTA
6655720 ATAAAAAGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
7 1 0.03
8 4 0.12
9 9 0.27
10 19 0.58
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
ATTATAATTA
Found at i:6656659 original size:29 final size:29
Alignment explanation
Indices: 6656584--6656683 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
6656574 TAGTCGTATT
* * *
6656584 TTTATATATATTCATGTTAGTTATGTCTA
1 TTTATATATATTCATATTAATCATGTCTA
* * *
6656613 TTTGTATATATCCGTATTAATCATGTCTA
1 TTTATATATATTCATATTAATCATGTCTA
* * *
6656642 TTTATATATATTCATATTATTCATTTTTA
1 TTTATATATATTCATATTAATCATGTCTA
6656671 TTTATAATATATT
1 TTTAT-ATATATT
6656684 TAAACGAATT
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
29 51 0.88
30 7 0.12
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (29 bp):
TTTATATATATTCATATTAATCATGTCTA
Found at i:6658575 original size:16 final size:17
Alignment explanation
Indices: 6658554--6658596 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
6658544 AATATGATAT
6658554 AATAATATAAAAT-AAA
1 AATAATATAAAATAAAA
6658570 AATAATA-AAAATACAAA
1 AATAATATAAAATA-AAA
6658587 AATAATATAA
1 AATAATATAA
6658597 TTTAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 5 0.21
16 7 0.29
17 10 0.42
18 2 0.08
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (17 bp):
AATAATATAAAATAAAA
Found at i:6659175 original size:34 final size:33
Alignment explanation
Indices: 6659137--6659254 Score: 110
Period size: 34 Copynumber: 3.4 Consensus size: 33
6659127 CTAAAAATTT
* *
6659137 ATTTTCGAAAAATTATATAATTTTTCATAAATAA
1 ATTTTTGAAAAATTATA-AATTTTTCAGAAATAA
** ** *
6659171 ATTTTTGGTAAATTATAAATTTTGTTGGAAATAC
1 ATTTTTGAAAAATTATAAATTTT-TCAGAAATAA
6659205 ATTTTTGAAAAATTATAAACTTTTTCAGAAATTTAA
1 ATTTTTGAAAAATTATAAA-TTTTTCAGAAA--TAA
* *
6659241 TTTTTTCAAAAATT
1 ATTTTTGAAAAATT
6659255 TATTTCTAAA
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
33 6 0.09
34 42 0.64
35 4 0.06
36 14 0.21
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.47
Consensus pattern (33 bp):
ATTTTTGAAAAATTATAAATTTTTCAGAAATAA
Found at i:6659259 original size:16 final size:17
Alignment explanation
Indices: 6659206--6659256 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
6659196 TGGAAATACA
* *
6659206 TTTTTGAAAAATTATAAAC
1 TTTTTCAAAAATT-T-AAT
*
6659225 TTTTTCAGAAATTTAAT
1 TTTTTCAAAAATTTAAT
6659242 TTTTTCAAAAATTTA
1 TTTTTCAAAAATTTA
6659257 TTTCTAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 16 0.57
18 1 0.04
19 11 0.39
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (17 bp):
TTTTTCAAAAATTTAAT
Found at i:6659959 original size:12 final size:12
Alignment explanation
Indices: 6659943--6659972 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6659933 TTTTTAAATG
6659943 ATTTAATAAAAA
1 ATTTAATAAAAA
*
6659955 TTTTAATAAAAA
1 ATTTAATAAAAA
6659967 ATTTAA
1 ATTTAA
6659973 ATTAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTTAATAAAAA
Found at i:6660032 original size:12 final size:12
Alignment explanation
Indices: 6660015--6660039 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6660005 TAATAATATG
6660015 TAAAAATATTAT
1 TAAAAATATTAT
6660027 TAAAAATATTAT
1 TAAAAATATTAT
6660039 T
1 T
6660040 TATAATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAAAATATTAT
Found at i:6660118 original size:14 final size:15
Alignment explanation
Indices: 6660087--6660122 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
6660077 AAATTTTATC
*
6660087 AATATTTTTATAAAA
1 AATATTTATATAAAA
6660102 AATATTTATATAAAA
1 AATATTTATATAAAA
6660117 ATATAT
1 A-ATAT
6660123 AAAAATTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTATATAAAA
Found at i:6661625 original size:5 final size:6
Alignment explanation
Indices: 6661607--6661632 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6661597 CCATCCTAAA
6661607 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
6661633 ATCAGGAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:6673107 original size:2 final size:2
Alignment explanation
Indices: 6673100--6673136 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
6673090 GATAGTACCG
*
6673100 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6673137 GGGTTAGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:6675244 original size:15 final size:14
Alignment explanation
Indices: 6675224--6675293 Score: 58
Period size: 12 Copynumber: 5.1 Consensus size: 14
6675214 CTTTCCCTGG
6675224 TTTCTTCTCTTTTCT
1 TTTCTTCT-TTTTCT
*
6675239 TTTCTT-TGTTT-T
1 TTTCTTCTTTTTCT
*
6675251 TTTCTT-TCTTTC-
1 TTTCTTCTTTTTCT
6675263 TTTCTTCTTTTTCCT
1 TTTCTTCTTTTT-CT
* *
6675278 TTTGTTCTTTCTCT
1 TTTCTTCTTTTTCT
6675292 TT
1 TT
6675294 CTTTCCGACA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
12 17 0.37
13 7 0.15
14 6 0.13
15 16 0.35
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTCTTCTTTTTCT
Found at i:6675260 original size:4 final size:4
Alignment explanation
Indices: 6675224--6675298 Score: 52
Period size: 4 Copynumber: 19.0 Consensus size: 4
6675214 CTTTCCCTGG
* *
6675224 TTTC TTCTC TTTTC TTTTC TTTG TTTT TTTC TTTC TTTC TTTC -TTC TTT-
1 TTTC TT-TC -TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
*
6675273 TTCC TTT- TGTTC TTTC --TC TTTC TTTC
1 TTTC TTTC T-TTC TTTC TTTC TTTC TTTC
6675299 CGACATGGAC
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
2 2 0.03
3 6 0.10
4 38 0.66
5 10 0.17
6 2 0.03
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:6675273 original size:22 final size:21
Alignment explanation
Indices: 6675240--6675298 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
6675230 CTCTTTTCTT
*
6675240 TTCTTTGT-TTTTTTCTTTCT-
1 TTCTTTCTCTTTTTTCTTT-TG
*
6675260 TTCTTTCTTCTTTTTCCTTTTG
1 TTCTTTC-TCTTTTTTCTTTTG
6675282 TTCTTTCTCTTTCTTTC
1 TTCTTTCTCTTT-TTTC
6675299 CGACATGGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 6 0.19
21 7 0.22
22 19 0.59
ACGTcount: A:0.00, C:0.22, G:0.03, T:0.75
Consensus pattern (21 bp):
TTCTTTCTCTTTTTTCTTTTG
Found at i:6681166 original size:2 final size:2
Alignment explanation
Indices: 6681159--6681189 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6681149 CGAATGTTGC
6681159 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6681190 AGAACTGCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6690613 original size:12 final size:13
Alignment explanation
Indices: 6690585--6690627 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
6690575 ATTATCATAA
6690585 TAAATAATTACTTT
1 TAAATAATTA-TTT
6690599 TAAATAA-TATTT
1 TAAATAATTATTT
*
6690611 T-AATAATTAATT
1 TAAATAATTATTT
6690623 TAAAT
1 TAAAT
6690628 GAAATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 5 0.19
12 9 0.35
13 5 0.19
14 7 0.27
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (13 bp):
TAAATAATTATTT
Found at i:6692588 original size:19 final size:17
Alignment explanation
Indices: 6692564--6692606 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
6692554 TTTTATTAAA
*
6692564 AATAAATAAATACAATATT
1 AATAAAAAAAT-CAA-ATT
*
6692583 AATAAAAAAATTAAATT
1 AATAAAAAAATCAAATT
6692600 AATAAAA
1 AATAAAA
6692607 TTTGATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 10 0.45
18 2 0.09
19 10 0.45
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAAAAAAATCAAATT
Found at i:6692597 original size:28 final size:27
Alignment explanation
Indices: 6692561--6692623 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
6692551 AGTTTTTATT
*
6692561 AAAAA-TAAATAAATACAATATTAATAA
1 AAAAATTAAATAAATAAAAT-TTAATAA
* * *
6692588 AAAAATTAAATTAATAAAATTTGATAT
1 AAAAATTAAATAAATAAAATTTAATAA
6692615 AAAAATTAA
1 AAAAATTAA
6692624 TAATATATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 19 0.61
28 12 0.39
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAATTAAATAAATAAAATTTAATAA
Found at i:6692655 original size:25 final size:25
Alignment explanation
Indices: 6692627--6692721 Score: 59
Period size: 25 Copynumber: 3.6 Consensus size: 25
6692617 AAATTAATAA
6692627 TATATAAAAAATTTAAAATATTATT
1 TATATAAAAAATTTAAAATATTATT
**
6692652 TATA-ATTTAAATTTAATCAATATTTATT
1 TATATA-AAAAATTTAA--AATA-TTATT
* * * *
6692680 TA-ATAATAAAAATTATATTAATATT
1 TATATAA-AAAATTTAAAATATTATT
6692705 TATATTAAAAATATTTA
1 TATA-TAAAAA-ATTTA
6692722 TTTAATAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 16
0.68 0.12 0.21
Matches are distributed among these distances:
24 1 0.02
25 18 0.35
26 7 0.13
27 12 0.23
28 14 0.27
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (25 bp):
TATATAAAAAATTTAAAATATTATT
Found at i:6692682 original size:15 final size:15
Alignment explanation
Indices: 6692662--6692732 Score: 58
Period size: 15 Copynumber: 4.8 Consensus size: 15
6692652 TATAATTTAA
*
6692662 ATTTAATCAATATTT
1 ATTTAATAAATATTT
**
6692677 ATTTAAT-AATA-AA
1 ATTTAATAAATATTT
* *
6692690 AATTATATTAATATTT
1 ATTTA-ATAAATATTT
6692706 ATATTAA-AAATATTT
1 AT-TTAATAAATATTT
6692721 ATTTAATAAATA
1 ATTTAATAAATA
6692733 AACTAAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 10 0.23
15 25 0.57
16 2 0.05
17 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTTAATAAATATTT
Found at i:6692693 original size:29 final size:28
Alignment explanation
Indices: 6692624--6692717 Score: 86
Period size: 29 Copynumber: 3.3 Consensus size: 28
6692614 TAAAAATTAA
6692624 TAATATATAAAAAATTTAA-AATA-TTATT
1 TAATA-AT-AAAAATTTAATAATATTTATT
**
6692652 T-ATAATTTAAATTTAATCAATATTTATT
1 TAATAATAAAAATTTAAT-AATATTTATT
*
6692680 TAATAATAAAAATTATATTAATATTTATAT
1 TAATAATAAAAATT-TAATAATATTTAT-T
*
6692710 TAAAAATA
1 TAATAATA
6692718 TTTATTTAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
25 8 0.15
26 2 0.04
27 7 0.13
28 7 0.13
29 19 0.35
30 11 0.20
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (28 bp):
TAATAATAAAAATTTAATAATATTTATT
Found at i:6710212 original size:144 final size:144
Alignment explanation
Indices: 6709991--6710276 Score: 509
Period size: 144 Copynumber: 2.0 Consensus size: 144
6709981 AATAGGGCAT
*
6709991 TCCTGCAGTGGAAATGCTCAAATTGTGAAGAAAATACGATGAACCGTTACAACAAATAACCAATT
1 TCCTGCAGTGGAAATGCTCAAATTGTGAAGAAAATACGATGAACAGTTACAACAAATAACCAATT
* *
6710056 GTGCCTCTGATTACGCCATTATTATGGGAAGATACGTAAGTTAGAAAAAATTTAACACTATCCAG
66 GTGCCTCTGATTACGCCATTATCATGGGAAGATACGTAAGTAAGAAAAAATTTAACACTATCCAG
6710121 GCAACCAGGTAAAA
131 GCAACCAGGTAAAA
*
6710135 TCCTGCAGTGGAAATGCTCAAATTGTGAAGAAAATAGGATGAACAGTTACAACAAATAACCAATT
1 TCCTGCAGTGGAAATGCTCAAATTGTGAAGAAAATACGATGAACAGTTACAACAAATAACCAATT
* * *
6710200 GTGCCTCTGATTATGCCATTGTCATGGGAAGATACGTAAGTAAGAAAAAATTTAGCACTATCCAG
66 GTGCCTCTGATTACGCCATTATCATGGGAAGATACGTAAGTAAGAAAAAATTTAACACTATCCAG
6710265 GCAACCAGGTAA
131 GCAACCAGGTAA
6710277 CATTTAGAAA
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
144 135 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (144 bp):
TCCTGCAGTGGAAATGCTCAAATTGTGAAGAAAATACGATGAACAGTTACAACAAATAACCAATT
GTGCCTCTGATTACGCCATTATCATGGGAAGATACGTAAGTAAGAAAAAATTTAACACTATCCAG
GCAACCAGGTAAAA
Found at i:6722734 original size:2 final size:2
Alignment explanation
Indices: 6722727--6722759 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6722717 CAAGCAGTCA
6722727 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6722760 ACACTCTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6724557 original size:31 final size:30
Alignment explanation
Indices: 6724516--6724638 Score: 121
Period size: 31 Copynumber: 4.0 Consensus size: 30
6724506 ATATATTATT
*
6724516 AATAAGTTAAATAATATTATTTTATTAATAA
1 AATAAATTAAATAATATTATTTTATTAAT-A
6724547 AATAAATTAAATAATATTATTTTATTAATA
1 AATAAATTAAATAATATTATTTTATTAATA
* *
6724577 AATAAAATTTTTAAA-AATTATTATTTTATTTATT
1 AAT-AAA---TTAAATAA-TATTATTTTATTAATA
6724611 AATAAA-TAAAT-AT-TTGA-TTTATTAATA
1 AATAAATTAAATAATATT-ATTTTATTAATA
6724638 A
1 A
6724639 TATATAATAT
Statistics
Matches: 80, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
27 11 0.14
28 2 0.03
29 5 0.06
30 4 0.05
31 31 0.39
33 5 0.06
34 22 0.28
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
AATAAATTAAATAATATTATTTTATTAATA
Found at i:6724617 original size:23 final size:23
Alignment explanation
Indices: 6724598--6724650 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 23
6724588 TAAAAATTAT
*
6724598 TATTTTATTTATTAATAAATAAA
1 TATTTGATTTATTAATAAATAAA
6724621 TATTTGATTTATTAATAATATATAA
1 TATTTGATTTATTAATAA-ATA-AA
6724646 TATTT
1 TATTT
6724651 ATATATAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 17 0.63
24 3 0.11
25 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTTGATTTATTAATAAATAAA
Found at i:6724650 original size:20 final size:22
Alignment explanation
Indices: 6724482--6724652 Score: 66
Period size: 26 Copynumber: 7.5 Consensus size: 22
6724472 TTTATATTTG
**
6724482 ATATA-TTATTAATGTATAAATT
1 ATATATTTATTAATAAATAAA-T
* *
6724504 TTATATATTATTAATAAGTTAAAT
1 ATATAT-TTATTAATAA-ATAAAT
6724528 AATATTATTTTATTAATAAAATAAATT
1 -ATA-TA-TTTATTAAT-AAATAAA-T
* * *
6724555 AAATAATATTATTTTATTAATAAAT
1 ATAT-AT-TTA-TTAATAAATAAAT
* * *
6724580 A-AAATTT-TTAA-AAATTATT
1 ATATATTTATTAATAAATAAAT
*
6724599 ATTTTATTTATTAATAAATAAAT
1 A-TATATTTATTAATAAATAAAT
* *
6724622 ATTTGATTTATTAAT-AATATAT
1 ATAT-ATTTATTAATAAATAAAT
6724644 A-ATATTTAT
1 ATATATTTAT
6724653 ATATAGATAA
Statistics
Matches: 113, Mismatches: 20, Indels: 34
0.68 0.12 0.20
Matches are distributed among these distances:
19 6 0.05
20 9 0.08
21 5 0.04
22 20 0.18
23 19 0.17
24 10 0.09
25 10 0.09
26 26 0.23
27 8 0.07
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATATATTTATTAATAAATAAAT
Found at i:6725268 original size:27 final size:29
Alignment explanation
Indices: 6725236--6725299 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
6725226 AAATTATGTA
6725236 ATTTTTTAAAA-TA-TC-TCAAATTTTTT
1 ATTTTTTAAAACTATTCTTCAAATTTTTT
* * *
6725262 ATATTTTAAAACTATTCTTTATATTTTTT
1 ATTTTTTAAAACTATTCTTCAAATTTTTT
6725291 ATTTTTTAA
1 ATTTTTTAA
6725300 TATTAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 10 0.32
27 2 0.06
28 2 0.06
29 17 0.55
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (29 bp):
ATTTTTTAAAACTATTCTTCAAATTTTTT
Found at i:6725552 original size:18 final size:19
Alignment explanation
Indices: 6725529--6725564 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6725519 TTATTATTTA
*
6725529 TAATATTTTAT-ATTAATG
1 TAATATTTAATAATTAATG
6725547 TAATATTTAATAATTAAT
1 TAATATTTAATAATTAAT
6725565 TGGGTGAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (19 bp):
TAATATTTAATAATTAATG
Found at i:6726341 original size:11 final size:11
Alignment explanation
Indices: 6726302--6726340 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6726292 ATAATTATAA
6726302 TTATATAAAAT
1 TTATATAAAAT
6726313 TTAT-TAAAACT
1 TTATATAAAA-T
*
6726324 TTATATTAAAT
1 TTATATAAAAT
6726335 TTATAT
1 TTATAT
6726341 TTATAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 5 0.20
11 16 0.64
12 4 0.16
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TTATATAAAAT
Found at i:6727240 original size:29 final size:29
Alignment explanation
Indices: 6727188--6727245 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
6727178 TATTATATAT
* *
6727188 ATTTATTTTTATATTTAATAAATATGTTAA
1 ATTTATTTTCATATCTAATAAATAT-TTAA
*
6727218 ATTTATTTTCAT-TCTAATGAATATTTAA
1 ATTTATTTTCATATCTAATAAATATTTAA
6727246 TAGTTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 11 0.44
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (29 bp):
ATTTATTTTCATATCTAATAAATATTTAA
Found at i:6729256 original size:17 final size:18
Alignment explanation
Indices: 6729218--6729258 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
6729208 TATACTGATA
* *
6729218 ATAAATCAAATATAAACT
1 ATAAATTAAAAATAAACT
6729236 -TAAATTAAAAATAAA-T
1 ATAAATTAAAAATAAACT
6729252 ATAAATT
1 ATAAATT
6729259 TTTACTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATTAAAAATAAACT
Found at i:6731279 original size:6 final size:6
Alignment explanation
Indices: 6731263--6731296 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
6731253 AAGTAGGCTG
*
6731263 TTCTCC GTCTCC TTCTCC TTCTCC TTCTCC TTCT
1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCT
6731297 GGGTTTGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (6 bp):
TTCTCC
Found at i:6734035 original size:23 final size:24
Alignment explanation
Indices: 6734009--6734053 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
6733999 AATGGATGAT
* *
6734009 AAAATTAATTATGATTA-AATTTA
1 AAAAATAATTATAATTATAATTTA
6734032 AAAAATAATTATAATTATAATT
1 AAAAATAATTATAATTATAATT
6734054 ACAATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AAAAATAATTATAATTATAATTTA
Found at i:6738014 original size:2 final size:2
Alignment explanation
Indices: 6738007--6738032 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6737997 CTATTTTTGC
6738007 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6738033 TGCAACCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6741780 original size:57 final size:57
Alignment explanation
Indices: 6741711--6741823 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
6741701 AATAAAATTC
*
6741711 AACCGAATTCGAATCTCAAATTTCGAATTCAATTTAAACTTAATATTGTATCGGATT
1 AACCGAATTCGAATCTCAAATTTCAAATTCAATTTAAACTTAATATTGTATCGGATT
* *
6741768 AACCGAATTCGAATCTCAAATTTCAAATTCAGTTTAAACTTAATATTGTATTGGAT
1 AACCGAATTCGAATCTCAAATTTCAAATTCAATTTAAACTTAATATTGTATCGGAT
6741824 CAAATTCAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (57 bp):
AACCGAATTCGAATCTCAAATTTCAAATTCAATTTAAACTTAATATTGTATCGGATT
Found at i:6747894 original size:25 final size:25
Alignment explanation
Indices: 6747860--6747907 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
6747850 CCAAGGAAAA
*
6747860 TTTCAATTGCTCGAGGACCTAACAC
1 TTTCAATTGCTCGAGAACCTAACAC
*
6747885 TTTCAATTGCTTGAGAACCTAAC
1 TTTCAATTGCTCGAGAACCTAAC
6747908 TCCATCAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (25 bp):
TTTCAATTGCTCGAGAACCTAACAC
Found at i:6747915 original size:25 final size:25
Alignment explanation
Indices: 6747862--6747915 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
6747852 AAGGAAAATT
* **
6747862 TCAATTGCTCGAGGACCTAACACTT
1 TCAATTGCTCGAGAACCTAACACCA
* *
6747887 TCAATTGCTTGAGAACCTAACTCCA
1 TCAATTGCTCGAGAACCTAACACCA
6747912 TCAA
1 TCAA
6747916 CTTGATACAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (25 bp):
TCAATTGCTCGAGAACCTAACACCA
Found at i:6750287 original size:13 final size:14
Alignment explanation
Indices: 6750255--6750287 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
6750245 TTTAAAAAAA
6750255 TTAAATAAAATTAT
1 TTAAATAAAATTAT
6750269 TT-AATAAAA-TAT
1 TTAAATAAAATTAT
6750281 TTAAATA
1 TTAAATA
6750288 TTAAAGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.28
13 11 0.61
14 2 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
TTAAATAAAATTAT
Found at i:6757033 original size:35 final size:35
Alignment explanation
Indices: 6756994--6757121 Score: 109
Period size: 35 Copynumber: 3.7 Consensus size: 35
6756984 ACAAGTTTTC
6756994 AAAAATAAA-TTTCTAAAAATTCATAATTTTTTAAA
1 AAAAATAAATTTTC-AAAAATTCATAATTTTTTAAA
* ** *
6757029 AAAAATAAATTTTCAAAAAATCATATAACTTTTCAA
1 AAAAATAAATTTTCAAAAATTCATA-ATTTTTTAAA
* * * **
6757065 AAATA-AAATTTTGAAATATT-ATAATTTTTTTTA
1 AAAAATAAATTTTCAAAAATTCATAATTTTTTAAA
* * *
6757098 AAAAATGACTTTTTAAAAATTCAT
1 AAAAATAAATTTTCAAAAATTCAT
6757122 TTCCTAAAAT
Statistics
Matches: 72, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
33 10 0.14
34 14 0.19
35 33 0.46
36 15 0.21
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.41
Consensus pattern (35 bp):
AAAAATAAATTTTCAAAAATTCATAATTTTTTAAA
Found at i:6757036 original size:17 final size:17
Alignment explanation
Indices: 6756994--6757067 Score: 51
Period size: 17 Copynumber: 4.1 Consensus size: 17
6756984 ACAAGTTTTC
6756994 AAAAATAAA-TTTCTAAA
1 AAAAATAAATTTTC-AAA
** * *
6757011 AATTCATAATTTTTTAAA
1 AA-AAATAAATTTTCAAA
6757029 AAAAATAAATTTTCAAA
1 AAAAATAAATTTTCAAA
*
6757046 AAATCATATAACTTTTCAAA
1 AAA--A-ATAAATTTTCAAA
6757066 AA
1 AA
6757068 TAAAATTTTG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
17 16 0.37
18 9 0.21
19 4 0.09
20 14 0.33
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAAATAAATTTTCAAA
Found at i:6757048 original size:19 final size:19
Alignment explanation
Indices: 6757026--6757073 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
6757016 ATAATTTTTT
6757026 AAAAAAAATAAATTTTCAA
1 AAAAAAAATAAATTTTCAA
* * *
6757045 AAAATCATATAACTTTTCAA
1 AAAA-AAAATAAATTTTCAA
*
6757065 AAATAAAAT
1 AAAAAAAAT
6757074 TTTGAAATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAAAATAAATTTTCAA
Found at i:6757067 original size:69 final size:69
Alignment explanation
Indices: 6756989--6757121 Score: 171
Period size: 69 Copynumber: 1.9 Consensus size: 69
6756979 TTTATACAAG
6756989 TTTTCAAAAAT-AAATTTCT-AAAAATTCATAATTTTTTAAAAAAAATAAATTTTCAAAAAATCA
1 TTTTCAAAAATAAAATTT-TGAAAAATT-ATAATTTTTTAAAAAAAATAAATTTTCAAAAAATCA
6757052 TATAAC
64 TATAAC
* ** * * * *
6757058 TTTTCAAAAATAAAATTTTGAAATATTATAATTTTTTTTAAAAAATGACTTTTTAAAAATTCAT
1 TTTTCAAAAATAAAATTTTGAAAAATTATAATTTTTTAAAAAAAATAAATTTTCAAAAAATCAT
6757122 TTCCTAAAAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
69 43 0.78
70 12 0.22
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (69 bp):
TTTTCAAAAATAAAATTTTGAAAAATTATAATTTTTTAAAAAAAATAAATTTTCAAAAAATCATA
TAAC
Found at i:6757222 original size:20 final size:20
Alignment explanation
Indices: 6757194--6757233 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6757184 TTTTTTGAAA
6757194 ATAAATTTTCAAAAAGTTAT
1 ATAAATTTTCAAAAAGTTAT
* *
6757214 ATAACTTTTCAAAAATTTAT
1 ATAAATTTTCAAAAAGTTAT
6757234 TTTTGAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (20 bp):
ATAAATTTTCAAAAAGTTAT
Found at i:6757236 original size:34 final size:34
Alignment explanation
Indices: 6757198--6757285 Score: 90
Period size: 34 Copynumber: 2.6 Consensus size: 34
6757188 TTGAAAATAA
6757198 ATTTTCAAAAAGTTATATAACTT-TTCAAAAATTT
1 ATTTTCAAAAAGTTATATAA-TTCTTCAAAAATTT
** * * *
6757232 ATTTTTGAAAAGATT-TATGATTCTTTAAGAATTT
1 ATTTTCAAAAAG-TTATATAATTCTTCAAAAATTT
*
6757266 ATTTTCAAAAAATTATATAA
1 ATTTTCAAAAAGTTATATAA
6757286 GTTTCCGAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
33 4 0.10
34 36 0.86
35 2 0.05
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (34 bp):
ATTTTCAAAAAGTTATATAATTCTTCAAAAATTT
Found at i:6765853 original size:14 final size:14
Alignment explanation
Indices: 6765834--6765863 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6765824 TCCCCAATTG
6765834 AAGTTTGAGCCTTC
1 AAGTTTGAGCCTTC
6765848 AAGTTTGAGCCTTC
1 AAGTTTGAGCCTTC
6765862 AA
1 AA
6765864 TCTTCAGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (14 bp):
AAGTTTGAGCCTTC
Found at i:6766779 original size:42 final size:42
Alignment explanation
Indices: 6766634--6766760 Score: 227
Period size: 42 Copynumber: 3.0 Consensus size: 42
6766624 GTTTCCAAAG
* * *
6766634 TTCAATTCCTTACTTGCTTGCAAACTAGAATCATAAGAAGGT
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
6766676 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
6766718 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
6766760 T
1 T
6766761 CAGTATCTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (42 bp):
TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
Found at i:6771681 original size:35 final size:35
Alignment explanation
Indices: 6771642--6771714 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
6771632 TATCAACAAA
*
6771642 GAAATTGCAAATTAATGCAGTAAGAAGATATAAAT
1 GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
** *
6771677 GAAATTGCAAATTAAGGCAGTGCGAAGATATATAT
1 GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
6771712 GAA
1 GAA
6771715 GCATTATCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.25
Consensus pattern (35 bp):
GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
Found at i:6773997 original size:25 final size:25
Alignment explanation
Indices: 6773946--6774012 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
6773936 TTTTTAAAAG
* * *
6773946 TTTTATATTATATATTTATGTAAATT
1 TTTTATA-AATATATTAATATAAATT
*
6773972 TTTTATAAATATATTAATATATATT
1 TTTTATAAATATATTAATATAAATT
** *
6773997 TTAAATAAAAATATTA
1 TTTTATAAATATATTA
6774013 GTTTTAATTA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (25 bp):
TTTTATAAATATATTAATATAAATT
Found at i:6774060 original size:22 final size:23
Alignment explanation
Indices: 6774004--6774050 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6773994 ATTTTAAATA
* * *
6774004 AAAATATTAGTTTTAATTAATTT
1 AAAATAATAATTTAAATTAATTT
6774027 AAAATAATAATTTAAATT-ATTT
1 AAAATAATAATTTAAATTAATTT
6774049 AA
1 AA
6774051 TAAATAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AAAATAATAATTTAAATTAATTT
Found at i:6774789 original size:34 final size:35
Alignment explanation
Indices: 6774722--6774789 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
6774712 CAATATTTAT
* *
6774722 TATTATTATTTATAAAAAATTTTAAATATATTAAA
1 TATTATTATTTATAAAAAAATTTAAATAAATTAAA
*
6774757 TATTA-TATTT-TAAAAATAATTTATATAAATTAA
1 TATTATTATTTATAAAAA-AATTTAAATAAATTAA
6774790 TTAAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 6 0.21
34 18 0.62
35 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (35 bp):
TATTATTATTTATAAAAAAATTTAAATAAATTAAA
Found at i:6775467 original size:15 final size:14
Alignment explanation
Indices: 6775447--6775489 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 14
6775437 TAATATGATA
6775447 ATATAATATAAAAT
1 ATATAATATAAAAT
*
6775461 GATATAAATAAAAAAT
1 -ATAT-AATATAAAAT
6775477 ATATAA-ATAAAAT
1 ATATAATATAAAAT
6775490 TATTAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 6 0.24
14 2 0.08
15 8 0.32
16 9 0.36
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
ATATAATATAAAAT
Found at i:6775509 original size:21 final size:20
Alignment explanation
Indices: 6775471--6775522 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
6775461 GATATAAATA
6775471 AAAAATATATAAATAAAATTATT
1 AAAAATAT-TAAA-AAAATTA-T
6775494 AAAAATATTAAAAAAATTAT
1 AAAAATATTAAAAAAATTAT
*
6775514 AAATATATT
1 AAAAATATT
6775523 TAATAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 9 0.32
21 7 0.25
22 4 0.14
23 8 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAATATTAAAAAAATTAT
Found at i:6775525 original size:21 final size:22
Alignment explanation
Indices: 6775471--6775531 Score: 72
Period size: 21 Copynumber: 2.8 Consensus size: 22
6775461 GATATAAATA
*
6775471 AAAAATATATAAATAAAATTATT
1 AAAAATATTTAAA-AAAATTATT
6775494 AAAAATA-TTAAAAAAATTA-T
1 AAAAATATTTAAAAAAATTATT
* *
6775514 AAATATATTTAATAAAAT
1 AAAAATATTTAAAAAAAT
6775532 CCAAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 4 0.12
23 7 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAAATATTTAAAAAAATTATT
Found at i:6779477 original size:65 final size:65
Alignment explanation
Indices: 6779373--6779502 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
6779363 TTGTGAGATT
*
6779373 AACTTATCTGCTTATGGATTTAATCTCTATGCTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
1 AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
* *
6779438 AACTTATCTGCTTATGGATTTGATCTCTATACTAGTCTTCCTTTTCTTCTTATTTTGTTAGTAGC
1 AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
6779503 TACAGCTTTC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.50
Consensus pattern (65 bp):
AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
Found at i:6785356 original size:126 final size:126
Alignment explanation
Indices: 6785131--6785385 Score: 440
Period size: 126 Copynumber: 2.0 Consensus size: 126
6785121 GTGCTACCAT
*
6785131 TTGTTCATATACATTTAATGTTGATTTTACTGGTTGTGTACTTGTGTTTTTGTGGATGTTTGAAG
1 TTGTTCATATACATTTAATATTGATTTTACTGGTTGTGTACTTGTGTTTTTGTGGATGTTTGAAG
6785196 ATTTTATGGAGGCAATTCAGCTATTGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
66 ATTTTATGGAGGCAATTCAGCTATTGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
* *
6785257 TTGTTCATATACATTTAATATTGATTTTACT-GTTGTGTACTTGTTTTTTTTGTTGATGTTTGAA
1 TTGTTCATATACATTTAATATTGATTTTACTGGTTGTGTACTTG-TGTTTTTGTGGATGTTTGAA
* * *
6785321 GATTTTATGGAGGCAATTCAGCTGTTGGGTAAGAAGATCATCAGGAAGTTGAGCATGTTATC
65 GATTTTATGGAGGCAATTCAGCTATTGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
6785383 TTG
1 TTG
6785386 AATTGAAGTA
Statistics
Matches: 122, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
125 12 0.10
126 110 0.90
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.43
Consensus pattern (126 bp):
TTGTTCATATACATTTAATATTGATTTTACTGGTTGTGTACTTGTGTTTTTGTGGATGTTTGAAG
ATTTTATGGAGGCAATTCAGCTATTGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
Found at i:6787817 original size:65 final size:65
Alignment explanation
Indices: 6787740--6787867 Score: 197
Period size: 65 Copynumber: 2.0 Consensus size: 65
6787730 CCCAAATCAA
* *
6787740 AAAGTTAGCTGC-TTTGAACAATTTAAAACGAACCCAGTTTTTTCAAA-CCTAAAAGAAAGAAAC
1 AAAGTTAACTGCTTTTGAACAATTT-AAACAAACCCAG-TTTTTCAAATCCTAAAAGAAAGAAAC
6787803 CT
64 CT
*
6787805 AAAGTTAACTGCTTTTGAATAATTTAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAAC
1 AAAGTTAACTGCTTTTGAACAATTTAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAAC
6787868 GATCCATTTG
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
64 9 0.16
65 38 0.66
66 11 0.19
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (65 bp):
AAAGTTAACTGCTTTTGAACAATTTAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAACCT
Found at i:6790962 original size:41 final size:42
Alignment explanation
Indices: 6790871--6790989 Score: 176
Period size: 41 Copynumber: 3.0 Consensus size: 42
6790861 GTTTCCAAAG
* * *
6790871 TTCAA-TCC-TACTTGCTTGCAAACTAGAATC-TAAG-AGGT
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
6790909 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
6790951 TTCAATT-CTTACTTTCTTCCAGACTAGAATCATAAGAAG
1 TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAG
6790990 TTCAGTATCT
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
38 5 0.07
39 3 0.04
40 19 0.26
41 36 0.49
42 11 0.15
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (42 bp):
TTCAATTCCTTACTTTCTTCCAGACTAGAATCATAAGAAGGT
Found at i:6795929 original size:35 final size:35
Alignment explanation
Indices: 6795890--6795962 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
6795880 TATCAACAAA
*
6795890 GAAATTGCAAATTAATGCAGTAAGAAGATATAAAT
1 GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
** *
6795925 GAAATTGCAAATTAAGGCAGTGCGAAGATATATAT
1 GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
6795960 GAA
1 GAA
6795963 GCATTATCGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.25
Consensus pattern (35 bp):
GAAATTGCAAATTAAGGCAGTAAGAAGATATAAAT
Found at i:6798342 original size:22 final size:23
Alignment explanation
Indices: 6798286--6798332 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
6798276 ATTTTAAATA
* * *
6798286 AAAATATTAGTTTTAATTAATTT
1 AAAATAATAATTTAAATTAATTT
6798309 AAAATAATAATTTAAATT-ATTT
1 AAAATAATAATTTAAATTAATTT
6798331 AA
1 AA
6798333 TAAATAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AAAATAATAATTTAAATTAATTT
Found at i:6799066 original size:20 final size:18
Alignment explanation
Indices: 6799038--6799080 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
6799028 TAATAATGAA
* *
6799038 TATAATTTAAATATTAATAT
1 TATATTTTAAA-AATAAT-T
6799058 TATATTTTAAAAATAATT
1 TATATTTTAAAAATAATT
6799076 TATAT
1 TATAT
6799081 AAATTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 5 0.24
20 10 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATATTTTAAAAATAATT
Found at i:6799076 original size:48 final size:49
Alignment explanation
Indices: 6799001--6799107 Score: 116
Period size: 48 Copynumber: 2.2 Consensus size: 49
6798991 CAACAATATT
* *
6799001 TATTATTATTATTATTTATAAAAAATTTA-AT-AATGAATATAATTTAAA
1 TATTAATATTATTATTTATAAAAAATTTATATAAATGAAT-TAAATTAAA
*
6799049 TATTAATATTA-TATTT-TAAAAATAATTTATATAAATTAATTAAATTAAA
1 TATTAATATTATTATTTAT-AAAA-AATTTATATAAATGAATTAAATTAAA
*
6799098 TTTTAA-ATTA
1 TATTAATATTA
6799108 AAAATATAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
46 1 0.02
47 9 0.18
48 20 0.39
49 15 0.29
50 6 0.12
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (49 bp):
TATTAATATTATTATTTATAAAAAATTTATATAAATGAATTAAATTAAA
Found at i:6799783 original size:15 final size:14
Alignment explanation
Indices: 6799763--6799805 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 14
6799753 TAATATGATA
6799763 ATATAATATAAAAT
1 ATATAATATAAAAT
*
6799777 GATATAAATAAAAAAT
1 -ATAT-AATATAAAAT
6799793 ATATAA-ATAAAAT
1 ATATAATATAAAAT
6799806 TATTAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 6 0.24
14 2 0.08
15 8 0.32
16 9 0.36
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (14 bp):
ATATAATATAAAAT
Found at i:6799812 original size:13 final size:14
Alignment explanation
Indices: 6799763--6799812 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
6799753 TAATATGATA
*
6799763 ATATAATATAAAATG
1 ATATAA-ATAAAATT
*
6799778 ATATAAATAAAAAAT
1 ATATAAAT-AAAATT
6799793 ATATAAATAAAATT
1 ATATAAATAAAATT
6799807 AT-TAAA
1 ATATAAA
6799813 AATATTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 4 0.13
14 9 0.29
15 18 0.58
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (14 bp):
ATATAAATAAAATT
Found at i:6799840 original size:20 final size:21
Alignment explanation
Indices: 6799787--6799846 Score: 70
Period size: 20 Copynumber: 2.8 Consensus size: 21
6799777 GATATAAATA
6799787 AAAAATATATAAATAAAATTATT
1 AAAAATAT-T-AATAAAATTATT
6799810 AAAAATATTAA-AAAATTA-T
1 AAAAATATTAATAAAATTATT
*
6799829 AAATATATTTAATAAAAT
1 AAAAATA-TTAATAAAAT
6799847 CCAAAAATCA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 7 0.21
20 11 0.32
21 7 0.21
22 1 0.03
23 8 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAATATTAATAAAATTATT
Found at i:6803783 original size:65 final size:65
Alignment explanation
Indices: 6803679--6803808 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
6803669 TTGTGAGATT
*
6803679 AACTTATCTGCTTATGGATTTAATCTCTATGCTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
1 AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
* *
6803744 AACTTATCTGCTTATGGATTTGATCTCTATACTAGTCTTCCTTTTCTTCTTATTTTGTTAGTAGC
1 AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
6803809 TACAGCTTTC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.50
Consensus pattern (65 bp):
AACTTATCTGCTTATGGATTTAATCTCTATACTAGTCTTCCTTTTCTTCTCATTTTGTTAGTAGC
Found at i:6809651 original size:125 final size:125
Alignment explanation
Indices: 6809420--6809672 Score: 436
Period size: 125 Copynumber: 2.0 Consensus size: 125
6809410 GTGCTACCAT
* *
6809420 TTGTTCATATACATTTAATGTTGATTTTACTGTTTGTGTACTTGTGTTTTTGTAGATGTTTGAAG
1 TTGTTCATATACATTTAATATTGATTTTACTGTTTCTGTACTTGTGTTTTTGTAGATGTTTGAAG
6809485 ATTTTATGGAGGCAATTCAGCTATGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
66 ATTTTATGGAGGCAATTCAGCTATGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
* *
6809545 TTGTTCATATACATTTAATATTGATTTTACTG-TTCTGTACTTGTTTTTTTGTTGATGTTTGAAG
1 TTGTTCATATACATTTAATATTGATTTTACTGTTTCTGTACTTGTGTTTTTGTAGATGTTTGAAG
* *
6809609 ATTTTATGGAGGCAATTCAGCTGTTGGGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
66 ATTTTATGGAGGCAATTCAGCT-ATGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
6809670 TTG
1 TTG
6809673 AATTGAAGTA
Statistics
Matches: 121, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
124 51 0.42
125 70 0.58
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (125 bp):
TTGTTCATATACATTTAATATTGATTTTACTGTTTCTGTACTTGTGTTTTTGTAGATGTTTGAAG
ATTTTATGGAGGCAATTCAGCTATGAGTAAGAAGATCAGCAGGAAGTTGAGCATGTTATC
Found at i:6812118 original size:65 final size:65
Alignment explanation
Indices: 6812041--6812168 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 65
6812031 ACCCAAATCA
* *
6812041 AAAGTTAGCTGCTTTGAACAATTTAAAACGAACCCAGTTTTTTCAAA-CCTAAAAGAAAGAAACC
1 AAAGTTAACTGCTTTGAACAATTTAAAACAAACCCAG-TTTTTCAAATCCTAAAAGAAAGAAACC
6812105 T
65 T
*
6812106 AAAGTTAACTGCTTTGAATAATTTAAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAAC
1 AAAGTTAACTGCTTTGAACAATTTAAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAAC
6812169 GATCCATTTG
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 9 0.15
65 50 0.85
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (65 bp):
AAAGTTAACTGCTTTGAACAATTTAAAACAAACCCAGTTTTTCAAATCCTAAAAGAAAGAAACCT
Found at i:6812668 original size:17 final size:17
Alignment explanation
Indices: 6812646--6812681 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
6812636 TGAACCTACA
6812646 AATTCCTATATTTCAGG
1 AATTCCTATATTTCAGG
6812663 AATTCCTATATTTCAGG
1 AATTCCTATATTTCAGG
6812680 AA
1 AA
6812682 ATGCTAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (17 bp):
AATTCCTATATTTCAGG
Found at i:6814884 original size:19 final size:19
Alignment explanation
Indices: 6814838--6814884 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
6814828 TTTTTAATGT
*
6814838 TAAAAATTTTAAAATATAA
1 TAAAAAATTTAAAATATAA
* *
6814857 TAAATAATTTAGAATATTAA
1 TAAAAAATTTAAAATA-TAA
6814877 -AAAAAATT
1 TAAAAAATT
6814885 AGATCTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
TAAAAAATTTAAAATATAA
Found at i:6815316 original size:16 final size:16
Alignment explanation
Indices: 6815297--6815327 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6815287 ATATATAAAA
6815297 TTTATATTTTATATAT
1 TTTATATTTTATATAT
6815313 TTTATATTTTATATA
1 TTTATATTTTATATA
6815328 CTGATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTATATTTTATATAT
Found at i:6818798 original size:29 final size:29
Alignment explanation
Indices: 6818744--6818799 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
6818734 TTTAACGAAA
* *
6818744 TTTATAAAAAATTACTATTTAAAAAATAT
1 TTTATAAAAAATTACCATTCAAAAAATAT
*
6818773 TTTA-AAAAAATTAACCATTCACAAAAT
1 TTTATAAAAAATT-ACCATTCAAAAAAT
6818800 TCTCCAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (29 bp):
TTTATAAAAAATTACCATTCAAAAAATAT
Found at i:6826383 original size:25 final size:27
Alignment explanation
Indices: 6826320--6826383 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
6826310 AAATTCAGAT
*
6826320 AAAATTTC-TCATCTAAGAATTTTATA
1 AAAATTTCATCATTTAAGAATTTTATA
*
6826346 AAAAATT-ATCATTTAA-AATTTT-TA
1 AAAATTTCATCATTTAAGAATTTTATA
6826370 AAAATTTCATCATT
1 AAAATTTCATCATT
6826384 GGATAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 8 0.24
25 12 0.36
26 13 0.39
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (27 bp):
AAAATTTCATCATTTAAGAATTTTATA
Found at i:6826495 original size:22 final size:21
Alignment explanation
Indices: 6826450--6826491 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6826440 ATAATCACGC
* *
6826450 AAAAATACCCCTAAAAATAAT
1 AAAAATAACCATAAAAATAAT
6826471 AAAAATAACCATAAAAATAAT
1 AAAAATAACCATAAAAATAAT
6826492 TAAACACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (21 bp):
AAAAATAACCATAAAAATAAT
Found at i:6826834 original size:15 final size:17
Alignment explanation
Indices: 6826803--6826835 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
6826793 CTTTCACTCT
6826803 TTTTCTCTTCTTCTTTC
1 TTTTCTCTTCTTCTTTC
6826820 TTTTCTC-TC-TCTTTC
1 TTTTCTCTTCTTCTTTC
6826835 T
1 T
6826836 AAAATGGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 2 0.12
17 7 0.44
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTCTCTTCTTCTTTC
Found at i:6827012 original size:31 final size:31
Alignment explanation
Indices: 6826969--6827035 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
6826959 AAAACTTGTT
*
6826969 AAAAAATTCAATCGACATCAAAAAATTCATC
1 AAAAAATGCAATCGACATCAAAAAATTCATC
*
6827000 AAAAAATGCAATCGACATCAAAAAATTTATC
1 AAAAAATGCAATCGACATCAAAAAATTCATC
6827031 AAAAA
1 AAAAA
6827036 CTAAAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.58, C:0.16, G:0.04, T:0.21
Consensus pattern (31 bp):
AAAAAATGCAATCGACATCAAAAAATTCATC
Found at i:6827053 original size:12 final size:13
Alignment explanation
Indices: 6827038--6827073 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
6827028 ATCAAAAACT
*
6827038 AAAAATTTTCTA-
1 AAAAAATTTCTAG
6827050 AAAAAATTTCTAG
1 AAAAAATTTCTAG
6827063 AAAAAATTTCT
1 AAAAAATTTCT
6827074 TTCTTGAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (13 bp):
AAAAAATTTCTAG
Found at i:6827054 original size:13 final size:14
Alignment explanation
Indices: 6827038--6827071 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
6827028 ATCAAAAACT
6827038 AAAAATTTTCTA-A
1 AAAAATTTTCTAGA
6827051 AAAAA-TTTCTAGA
1 AAAAATTTTCTAGA
6827064 AAAAATTT
1 AAAAATTT
6827072 CTTTCTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.32
13 11 0.58
14 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
AAAAATTTTCTAGA
Found at i:6827492 original size:15 final size:15
Alignment explanation
Indices: 6827459--6827502 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6827449 AACCAAAATA
* * *
6827459 ATAATAATAATAATA
1 ATAATGATAATGATG
*
6827474 ATAATGATGATGATG
1 ATAATGATAATGATG
6827489 ATAATGATAATGAT
1 ATAATGATAATGAT
6827503 AACTAACAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (15 bp):
ATAATGATAATGATG
Found at i:6829903 original size:18 final size:19
Alignment explanation
Indices: 6829858--6829906 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
6829848 CAAGGCCTGA
6829858 TCTTTATCCTCTTCCTCTT
1 TCTTTATCCTCTTCCTCTT
*
6829877 TCTTT-TCCT-TGTCTTCTT
1 TCTTTATCCTCT-TCCTCTT
6829895 T-TTTATCCTCTT
1 TCTTTATCCTCTT
6829907 TAGGTTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 4 0.15
18 16 0.62
19 6 0.23
ACGTcount: A:0.04, C:0.31, G:0.02, T:0.63
Consensus pattern (19 bp):
TCTTTATCCTCTTCCTCTT
Found at i:6831429 original size:15 final size:16
Alignment explanation
Indices: 6831396--6831432 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
6831386 AATAATTGTT
6831396 AAATTATAAGAATTAA
1 AAATTATAAGAATTAA
6831412 AAATT-TAATGAA-TAA
1 AAATTATAA-GAATTAA
6831427 AAATTA
1 AAATTA
6831433 AGTCAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
AAATTATAAGAATTAA
Found at i:6833872 original size:19 final size:20
Alignment explanation
Indices: 6833834--6833887 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
6833824 GAAAAGGCTC
*
6833834 TATTTTTATAATAATAATAT
1 TATTATTATAATAATAATAT
*
6833854 TATTATTATAAT-GTAATAT
1 TATTATTATAATAATAATAT
6833873 TATTAAATTATAATA
1 TATT--ATTATAATA
6833888 TGATTAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 10 0.34
20 11 0.38
21 8 0.28
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TATTATTATAATAATAATAT
Found at i:6837950 original size:20 final size:20
Alignment explanation
Indices: 6837910--6837969 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
6837900 CCCATCAATT
*
6837910 AAATTT-AAAAAATATAATAA
1 AAATTTAAAAAAAT-TATTAA
6837930 AAATTTAAAAAAATTATTAA
1 AAATTTAAAAAAATTATTAA
*
6837950 ATTAAGTTTAATAAAATTAT
1 A--AA-TTTAAAAAAATTAT
6837970 ATTCAATTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 12 0.35
21 7 0.21
22 2 0.06
23 13 0.38
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATTTAAAAAAATTATTAA
Found at i:6840057 original size:12 final size:11
Alignment explanation
Indices: 6840037--6840088 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
6840027 AAAGTTTTGT
6840037 ATAATTAATTTA
1 ATAA-TAATTTA
6840049 ATATATAATTTA
1 ATA-ATAATTTA
*
6840061 ATAAAAATATT-
1 ATAATAAT-TTA
6840072 ATAATAATTTA
1 ATAATAATTTA
*
6840083 AAAATA
1 ATAATA
6840089 CATACCACGT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
10 2 0.06
11 16 0.47
12 15 0.44
13 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
ATAATAATTTA
Found at i:6840110 original size:126 final size:124
Alignment explanation
Indices: 6839974--6840276 Score: 376
Period size: 118 Copynumber: 2.5 Consensus size: 124
6839964 ATGCTATATT
**
6839974 TCAAGTTTTCATAAAACAAATGATAAGAGTATTATAATAATTTAATATGTAATAAAGTTTTGTAT
1 TCAAGTTTTCATAAAACAAATGATAA-AGTATTATAATAATTTAATATGTAAT-AAGTTTTAAAT
*
6840039 AATTAATTTAATATATAATTTAATAAAAATATTATAATAA-TTT-AAAAATACATACCACGTG
64 AATTAATTTAATATATAATTTAAT-AAAATATTATAATAATTTTCAAAAATA-ATACCACATG
*
6840100 TCAAGTTTTCATAAAATAAATGATAAAG-ATGT-T-ATAA--TAAT-T-TAATAAGTTTTAAATA
1 TCAAGTTTTCATAAAACAAATGATAAAGTAT-TATAATAATTTAATATGTAATAAGTTTTAAATA
* *
6840158 GTTAATTTAATATATAATTTAATAAAGTATTATAATAATTTTCAAAAATAATACCACATG
65 ATTAATTTAATATATAATTTAATAAAATATTATAATAATTTTCAAAAATAATACCACATG
* ** * *
6840218 CCAAGTTTTTGTGAATCAAATGA-AAAGTATTATAATAATTTAATATGTAATTAA-TTTTA
1 TCAAGTTTTCATAAAACAAATGATAAAGTATTATAATAATTTAATATGTAA-TAAGTTTTA
6840277 TATTATATAT
Statistics
Matches: 154, Mismatches: 12, Indels: 25
0.81 0.06 0.13
Matches are distributed among these distances:
117 19 0.12
118 64 0.42
119 15 0.10
120 1 0.01
121 8 0.05
122 1 0.01
123 12 0.08
124 6 0.04
125 3 0.02
126 25 0.16
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (124 bp):
TCAAGTTTTCATAAAACAAATGATAAAGTATTATAATAATTTAATATGTAATAAGTTTTAAATAA
TTAATTTAATATATAATTTAATAAAATATTATAATAATTTTCAAAAATAATACCACATG
Found at i:6840700 original size:25 final size:25
Alignment explanation
Indices: 6840671--6840741 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
6840661 CCAAAACCTA
6840671 AAAATATTTTTAAAAATTTAATATT
1 AAAATATTTTTAAAAATTTAATATT
* *
6840696 AAAATTTTTTTAAAAA-TT-ATTTT
1 AAAATATTTTTAAAAATTTAATATT
* **
6840719 AATATATTAGTAAAAATTTAATA
1 AAAATATTTTTAAAAATTTAATA
6840742 ATATTATCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 16 0.43
24 4 0.11
25 17 0.46
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (25 bp):
AAAATATTTTTAAAAATTTAATATT
Found at i:6841968 original size:64 final size:63
Alignment explanation
Indices: 6841891--6842112 Score: 181
Period size: 64 Copynumber: 3.5 Consensus size: 63
6841881 TTTAAAGTCA
*
6841891 AAAATCTTTTAATATATTGGTAAGATTTTATAAATTTAA-TTTCAAAATTTTTTTATAAACTTAT
1 AAAATCTTTTAATATATTGGTAAGATTTTATGAATTTAACTTT-AAAATTTTTTTA-AAACTTAT
* * * * * *
6841955 AAAATCTTTTAATA-ATTTG-ATAGGTTCTCATGAATTTAACCTTAAAATTTTTTTAAATC-CAT
1 AAAATCTTTTAATATATTGGTA-AGATT-TTATGAATTTAACTTTAAAATTTTTTTAAAACTTAT
* *
6842017 CAAATCATTTT-ATAGT-TTGGTAAGA-TTTATGAATTTAATTTTTAAAATTTTCTTTAAATA-T
1 AAAATC-TTTTAATA-TATTGGTAAGATTTTATGAATTTAA-CTTTAAAATTTT-TTTAAA-ACT
6842078 TCAT
61 T-AT
* * * *
6842082 AAAATCATCTAATATATTGTTAAAATTTTAT
1 AAAATCTTTTAATATATTGGTAAGATTTTAT
6842113 TTCAAAACTA
Statistics
Matches: 123, Mismatches: 20, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
61 11 0.09
62 22 0.18
63 26 0.21
64 40 0.33
65 19 0.15
66 5 0.04
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (63 bp):
AAAATCTTTTAATATATTGGTAAGATTTTATGAATTTAACTTTAAAATTTTTTTAAAACTTAT
Found at i:6842062 original size:62 final size:62
Alignment explanation
Indices: 6841879--6842087 Score: 187
Period size: 64 Copynumber: 3.3 Consensus size: 62
6841869 TCAAAATTAA
* * *
6841879 TTTTTAAA-GTCA-AAAATCTTTTAAT-ATATTGGTAAGATTTTATAAATTTAATTTCAAAATT
1 TTTTTAAATCTCATAAAATCTTTTAATAAT-TTGGTAAGA-TTTATGAATTTAATTTTAAAATT
* * * * **
6841940 TTTTTATAAACTTATAAAATCTTTTAATAATTTGAT-AGGTTCTCATGAATTTAACCTTAAAATT
1 TTTTTA-AATCTCATAAAATCTTTTAATAATTTGGTAAGATT-T-ATGAATTTAATTTTAAAATT
* *
6842004 TTTTTAAATC-CATCAAATCATTTT-ATAGTTTGGTAAGATTTATGAATTTAATTTTTAAAATT
1 TTTTTAAATCTCATAAAATC-TTTTAATAATTTGGTAAGATTTATGAATTTAA-TTTTAAAATT
*
6842066 TTCTTTAAATATTCATAAAATC
1 TT-TTTAAAT-CTCATAAAATC
6842088 ATCTAATATA
Statistics
Matches: 118, Mismatches: 18, Indels: 20
0.76 0.12 0.13
Matches are distributed among these distances:
61 16 0.14
62 30 0.25
63 23 0.19
64 39 0.33
65 10 0.08
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (62 bp):
TTTTTAAATCTCATAAAATCTTTTAATAATTTGGTAAGATTTATGAATTTAATTTTAAAATT
Found at i:6842127 original size:967 final size:933
Alignment explanation
Indices: 6840280--6842141 Score: 2553
Period size: 967 Copynumber: 2.0 Consensus size: 933
6840270 AATTTTATAT
6840280 TATATATAGACATTATTATTTAATAAAACTAAAGTATTAAGAAAGCTAATCGAAAGCTTTATCCT
1 TATATATAGACATTATTATTTAATAAAACTAAAGTATTAAGAAAGCTAATCGAAAGCTTTATCCT
*
6840345 TAAAAAAGGTAAAAAGCCTGCAGCCGTATAAAAATCATTTAATTGGTTTTATTATTATTATAACG
66 TAAAAAAGGTAAAAAGCCTACAGCCGTATAAAAATCATTTAATTGGTTTTATTATTATTATAACG
* * * * *
6840410 TATAAATCCGAAAATTTAATCACTAAACATAAAATTTATAAGTTATTAACAAATTTTTTTATTTA
131 TATAAATCCGAAAATTCAATCACTAAACACAAAATTTATAAGTCATCAACAAACTTTTTTATTTA
** * * * * *
6840475 AGAGCGATTACCATCTAATGAATCTATTTTATTTTTAAAAGATTTTAAATTTGATTCAAGTTTTT
196 AGAAAGATTACAACCTAATGAATCTATTTCATTTTAAAAAGATTTTAAATTTGATTCAAGTTTCT
* * * * *
6840540 TTAAAAAATAAATTTTTATTTATTAAATTAAGTAAGGTCCAAAAGTATGATTATGTGTAGGAAAT
261 TTAAAAAATAAATTCTAATTTATTAAACTAAGTAAGATCCAAAAGTATGATTATATGTAGGAAAT
* * *
6840605 GTTATACCACCCCTTAATGTCCATACAAAAGATTTTATTAGTTGATTTTGTATTATCCAAAACCT
326 GTTATACCACCCCTCAATGTCCATACAAAAGATTTTATCAATTGATTTTGTATTATCCAAAACCT
* *
6840670 AAAAATATTTTTAAAAATTTAATATTAAAATTTTTTTAAAAATTATTTTAATATATTAGTAAAAA
391 AAAAATATTTTTAAAAATTTAATATTAAAATTTTTTTAAAAATTATTTCAATATATCAGTAAAAA
*
6840735 TTTAATAATATTATCTCATTTCAAGAACATTCAAAGAGATTATTTATCACTCATAAAAAGGTCAT
456 TTTAACAATATTATCTCATTTCAAGAACATTCAAAGAGATTATTTATCACTCATAAAAAGGTCAT
* * * * * * *
6840800 GTTTTCGAATTTATTTTCAAAAATTTTTTAAGTCAATAAAATCTTTTTATGGTAAAGTATGATTT
521 GTTTTCGAATTTATTTTCAAAAATCTTTTAAATAAATAAAATCTTCTAATAGTAAAGTAAGATTT
*
6840865 TATTTCCCATATAAGATCCTCCAGTATATTGATAAGAATTTTCTCAAAATTAATTTTTAAAGTCC
586 TATTTCCCATATAAGATCCTCCAATATATTGATAAGAATTTTCTCAAAATTAATTTTTAAAGTCC
* * *
6840930 ATGAAAATCTTTTAATATATTGGTAGGATTTTATAAATTTAATTTCAAATTTTTTTGTGAACTTA
651 A-GAAAATCTTTTAATATATTGGTAAGATTTTATAAATTTAATTTCAAATTTTTTTATAAACTTA
* *
6840995 TAACATCTTTTAATAATTTGATATGATTAATCTTAAAAATTATTTTTAAACCCATCAAATCATTT
715 TAAAATCTTTTAATAATTTGATATGATTAACCTTAAAAATTATTTTTAAACCCATCAAATCATTT
6841060 TATAGTTTGATAAGATTTATGAATTTAATTTCTAAAATTTTCTATAAATATTCATAAAATCATCT
780 TATAGTTTGATAAGATTTATGAATTTAATTTCTAAAATTTTCTATAAATATTCATAAAATCATCT
*
6841125 AATATATTGGTAAAATTTTATTTCAAAATTATTTTCAACTCATAAAAATTTATATTATCTATATA
845 AATATATTGGTAAAATTTTATTTCAAAACTATTTTCAACTCATAAAAATTTATATTATCTATATA
6841190 GGCATATAATTTTATATTATATTA
910 GGCATATAATTTTATATTATATTA
* * *
6841214 TATATATAGAGATTATTATTTAATAAAACTAAAGTATTAAGAAGGCTAATGGAAAGCTTTATCCT
1 TATATATAGACATTATTATTTAATAAAACTAAAGTATTAAGAAAGCTAATCGAAAGCTTTATCCT
* *
6841279 TAAAAAAGGTAAAAAGCCTACAGCCGTATAATAATCATTTAATTGATTTTATAAATAAATAATTA
66 TAAAAAAGGTAAAAAGCCTACAGCCGTATAAAAATCATTTAATTG---GT-T---T---T-ATTA
* * * * * * *
6841344 TTATTGCTGTTATAATGTATAAATCTGAAAATTCAATCATTAGACGCAAAATTTATGAGTCGTCA
120 TTA------TTATAACGTATAAATCCGAAAATTCAATCACTAAACACAAAATTTATAAGTCATCA
*
6841409 TCAAACTTTTTTATTTAAGAAAGATTACAACCTAATGAATCTATTTCATTTTAAAAAGATTTTAA
179 ACAAACTTTTTTATTTAAGAAAGATTACAACCTAATGAATCTATTTCATTTTAAAAAGATTTTAA
* *
6841474 ATTTGATTCAAG-TTCTTTAAAAAAGTAAATTCTAATTTA-TGAACTAGGTAAGATCC-AAAGTA
244 ATTTGATTCAAGTTTCTTTAAAAAA-TAAATTCTAATTTATTAAACTAAGTAAGATCCAAAAGTA
* ** *
6841536 T-AGTTATATGTAAGG-AATGTTATATCA-CCCTACAATGTTTATCCAAAAGATTTTATCAATTG
308 TGA-TTATATGT-AGGAAATGTTATACCACCCCT-CAATGTCCATACAAAAGATTTTATCAATTG
* *
6841598 ATTTTGTATTATCCAAAACTTAAAAATATTTTTAAAATATTTTCAATCATTTAATATTAAAAATT
370 ATTTTGTATTATCCAAAACCTAAAAATATTTTTAAAA-A-TTT-AAT-A-TTAAAATT-----TT
* *
6841663 ATTCT-TAAATTATTTCAATATATCGGTAAAAATTTAACAATATTATCTCATTTCAAGAACATTC
425 -TT-TAAAAATTATTTCAATATATCAGTAAAAATTTAACAATATTATCTCATTTCAAGAACATTC
* *
6841727 AAAGAGATTATTTGTCACTCAT-AAAGGGT-ATCGTTTTCGGAATTTATTTTTCAAAAATCTTTT
488 AAAGAGATTATTTATCACTCATAAAAAGGTCAT-GTTTTC-GAATTTA-TTTTCAAAAATCTTTT
* * *
6841790 AAATAAATAAAATCTTCTAATAGTTAAGTAAGTTTTTATTTCCCATATAATATCCTCCAATATAT
550 AAATAAATAAAATCTTCTAATAGTAAAGTAAGATTTTATTTCCCATATAAGATCCTCCAATATAT
*
6841855 TGATAAGAATTTTTTCAAAATTAATTTTTAAAGT-CA-AAAATCTTTTAATATATTGGTAAGATT
615 TGATAAGAATTTTCTCAAAATTAATTTTTAAAGTCCAGAAAATCTTTTAATATATTGGTAAGATT
6841918 TTATAAATTTAATTTCAAAATTTTTTTATAAACTTATAAAATCTTTTAATAATTTGATAGGTTCT
680 TTATAAATTTAATTTC-AAATTTTTTTATAAACTTATAAAATCTTTTAATAATTTG--A-----T
* *
6841983 CATGAATTTAACCTT-AAAATT-TTTTTAAATCCATCAAATCATTTTATAGTTTGGTAAGATTTA
737 -ATG-A-TTAACCTTAAAAATTATTTTTAAACCCATCAAATCATTTTATAGTTTGATAAGATTTA
* * *
6842046 TGAATTTAATTTTTAAAATTTTCTTTAAATATTCATAAAATCATCTAATATATTGTTAAAATTTT
799 TGAATTTAATTTCTAAAATTTTCTATAAATATTCATAAAATCATCTAATATATTGGTAAAATTTT
6842111 ATTTCAAAACTATTTTCAACTCATAAAAATT
864 ATTTCAAAACTATTTTCAACTCATAAAAATT
6842142 ATCCAATTTG
Statistics
Matches: 809, Mismatches: 72, Indels: 61
0.86 0.08 0.06
Matches are distributed among these distances:
934 105 0.13
937 1 0.00
938 1 0.00
941 1 0.00
944 1 0.00
945 7 0.01
948 5 0.01
949 85 0.11
950 28 0.03
951 129 0.16
952 3 0.00
953 1 0.00
954 7 0.01
958 44 0.05
959 50 0.06
960 86 0.11
961 105 0.13
966 1 0.00
967 135 0.17
968 7 0.01
969 7 0.01
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (933 bp):
TATATATAGACATTATTATTTAATAAAACTAAAGTATTAAGAAAGCTAATCGAAAGCTTTATCCT
TAAAAAAGGTAAAAAGCCTACAGCCGTATAAAAATCATTTAATTGGTTTTATTATTATTATAACG
TATAAATCCGAAAATTCAATCACTAAACACAAAATTTATAAGTCATCAACAAACTTTTTTATTTA
AGAAAGATTACAACCTAATGAATCTATTTCATTTTAAAAAGATTTTAAATTTGATTCAAGTTTCT
TTAAAAAATAAATTCTAATTTATTAAACTAAGTAAGATCCAAAAGTATGATTATATGTAGGAAAT
GTTATACCACCCCTCAATGTCCATACAAAAGATTTTATCAATTGATTTTGTATTATCCAAAACCT
AAAAATATTTTTAAAAATTTAATATTAAAATTTTTTTAAAAATTATTTCAATATATCAGTAAAAA
TTTAACAATATTATCTCATTTCAAGAACATTCAAAGAGATTATTTATCACTCATAAAAAGGTCAT
GTTTTCGAATTTATTTTCAAAAATCTTTTAAATAAATAAAATCTTCTAATAGTAAAGTAAGATTT
TATTTCCCATATAAGATCCTCCAATATATTGATAAGAATTTTCTCAAAATTAATTTTTAAAGTCC
AGAAAATCTTTTAATATATTGGTAAGATTTTATAAATTTAATTTCAAATTTTTTTATAAACTTAT
AAAATCTTTTAATAATTTGATATGATTAACCTTAAAAATTATTTTTAAACCCATCAAATCATTTT
ATAGTTTGATAAGATTTATGAATTTAATTTCTAAAATTTTCTATAAATATTCATAAAATCATCTA
ATATATTGGTAAAATTTTATTTCAAAACTATTTTCAACTCATAAAAATTTATATTATCTATATAG
GCATATAATTTTATATTATATTA
Found at i:6843376 original size:45 final size:45
Alignment explanation
Indices: 6843325--6843410 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
6843315 ACTCCCCAAG
* * **
6843325 CTAAAAGGAACATATTGTCAAAGCAAAGATTTTCATACGATGCTT
1 CTAAAAGAAACATACTAACAAAGCAAAGATTTTCATACGATGCTT
* *
6843370 CTAAAAGAAACATGCTAACAAAGGAAAGATTTTCATACGAT
1 CTAAAAGAAACATACTAACAAAGCAAAGATTTTCATACGAT
6843411 TCTTATTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (45 bp):
CTAAAAGAAACATACTAACAAAGCAAAGATTTTCATACGATGCTT
Found at i:6855233 original size:95 final size:95
Alignment explanation
Indices: 6855117--6855304 Score: 358
Period size: 95 Copynumber: 2.0 Consensus size: 95
6855107 TTGTTGGGGA
6855117 AAAAATTACTACTCAATTAAAAAAATTGTGAAAAAAATTAATCACAATTATTGCATTTTTTTTCT
1 AAAAATTACTACTCAATTAAAAAAATTGTGAAAAAAATTAATCACAATTATTGCATTTTTTTTCT
6855182 AACAAACACAATATTTGATGTTTGTAAAGG
66 AACAAACACAATATTTGATGTTTGTAAAGG
* *
6855212 AAAAATTTCTACTCAATTAAAAAAATTTTGAAAAAAATTAATCACAATTATTGCATTTTTTTTCT
1 AAAAATTACTACTCAATTAAAAAAATTGTGAAAAAAATTAATCACAATTATTGCATTTTTTTTCT
6855277 AACAAACACAATATTTGATGTTTGTAAA
66 AACAAACACAATATTTGATGTTTGTAAA
6855305 ATAAAAAGAA
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.37
Consensus pattern (95 bp):
AAAAATTACTACTCAATTAAAAAAATTGTGAAAAAAATTAATCACAATTATTGCATTTTTTTTCT
AACAAACACAATATTTGATGTTTGTAAAGG
Found at i:6859648 original size:2 final size:2
Alignment explanation
Indices: 6859641--6859669 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6859631 AGACTTTTCT
6859641 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
6859670 GGTTTAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:6861240 original size:23 final size:21
Alignment explanation
Indices: 6861214--6861268 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 21
6861204 AAAATTTCCA
* *
6861214 TTTTGCATTGTTTTTCACTCCC
1 TTTTTCATTGTTTTCCACT-CC
6861236 TTTTTCATTTTGTTTTCCACTCC
1 TTTTTCA--TTGTTTTCCACTCC
6861259 TTTTTTCATT
1 -TTTTTCATT
6861269 TTGTTTTCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 8 0.29
23 2 0.07
24 18 0.64
ACGTcount: A:0.09, C:0.24, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTTTCATTGTTTTCCACTCC
Found at i:6861248 original size:24 final size:24
Alignment explanation
Indices: 6861221--6861276 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
6861211 CCATTTTGCA
*
6861221 TTGTTTTTCACTCCCTTTTTCATT
1 TTGTTTTCCACTCCCTTTTTCATT
*
6861245 TTGTTTTCCACTCCTTTTTTCATT
1 TTGTTTTCCACTCCCTTTTTCATT
6861269 TTGTTTTC
1 TTGTTTTC
6861277 GTTTCTCGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.07, C:0.23, G:0.05, T:0.64
Consensus pattern (24 bp):
TTGTTTTCCACTCCCTTTTTCATT
Found at i:6864177 original size:17 final size:17
Alignment explanation
Indices: 6864155--6864188 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
6864145 TGACTTAGTC
6864155 CTATGGCATGTTTGTTT
1 CTATGGCATGTTTGTTT
6864172 CTATGGCATGTTTGTTT
1 CTATGGCATGTTTGTTT
6864189 TCTTAGTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.53
Consensus pattern (17 bp):
CTATGGCATGTTTGTTT
Found at i:6868885 original size:14 final size:14
Alignment explanation
Indices: 6868866--6868898 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6868856 TATTTAACTA
*
6868866 AAAAAAAATTATGT
1 AAAAAAAATTATAT
6868880 AAAAAAAATTATAT
1 AAAAAAAATTATAT
6868894 AAAAA
1 AAAAA
6868899 TTTATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
AAAAAAAATTATAT
Found at i:6870691 original size:17 final size:17
Alignment explanation
Indices: 6870671--6870714 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
6870661 GTGTAATATT
6870671 TTATTAATAAAAATAAA
1 TTATTAATAAAAATAAA
* *
6870688 TTATAAATAAAAATATA
1 TTATTAATAAAAATAAA
*
6870705 TTATTTATAA
1 TTATTAATAA
6870715 TCAGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTATTAATAAAAATAAA
Found at i:6870926 original size:18 final size:18
Alignment explanation
Indices: 6870903--6870941 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
6870893 CTATGAGATT
*
6870903 TTTTTTTATTAATTTTTC
1 TTTTTTTATTAATTTTAC
*
6870921 TTTTTTTATTTATTTTAC
1 TTTTTTTATTAATTTTAC
6870939 TTT
1 TTT
6870942 ATATTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTATTAATTTTAC
Found at i:6876541 original size:17 final size:17
Alignment explanation
Indices: 6876519--6876554 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6876509 ATAAAAATGA
6876519 TAAAAAAATATATAATT
1 TAAAAAAATATATAATT
*
6876536 TAAAAAAATATATATTT
1 TAAAAAAATATATAATT
6876553 TA
1 TA
6876555 TACGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAAAAATATATAATT
Found at i:6878851 original size:10 final size:10
Alignment explanation
Indices: 6878836--6878865 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
6878826 CTCACCCAGG
6878836 AAAAAAGAAAA
1 AAAAAAG-AAA
6878847 AAAAAAGAAA
1 AAAAAAGAAA
6878857 AAAAAAGAA
1 AAAAAAGAA
6878866 GGATGAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.63
11 7 0.37
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:6878852 original size:11 final size:11
Alignment explanation
Indices: 6878836--6878862 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6878826 CTCACCCAGG
6878836 AAAAAAGAAAA
1 AAAAAAGAAAA
6878847 AAAAAAGAAAA
1 AAAAAAGAAAA
6878858 AAAAA
1 AAAAA
6878863 GAAGGATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:6891939 original size:22 final size:24
Alignment explanation
Indices: 6891885--6891941 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
6891875 AATAATAATT
6891885 ATTATTATAATTATGATTGAAAAAA
1 ATTATTATAATTATGATT-AAAAAA
6891910 ATTATTATAATTATGATT-AAAAA
1 ATTATTATAATTATGATTAAAAAA
6891933 ATT-TTATAA
1 ATTATTATAA
6891942 AAATTTTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.19
23 8 0.25
25 18 0.56
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (24 bp):
ATTATTATAATTATGATTAAAAAA
Found at i:6894225 original size:16 final size:15
Alignment explanation
Indices: 6894200--6894229 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6894190 TGAATTATTG
6894200 TCTCCTGTTCTGTTT
1 TCTCCTGTTCTGTTT
6894215 TCTCTCTGTTCTGTT
1 TCTC-CTGTTCTGTT
6894230 GGGGGGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.27, G:0.13, T:0.60
Consensus pattern (15 bp):
TCTCCTGTTCTGTTT
Found at i:6894545 original size:3 final size:3
Alignment explanation
Indices: 6894537--6894561 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
6894527 CAAGATCTAC
6894537 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
6894562 GAAATGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:6895788 original size:22 final size:22
Alignment explanation
Indices: 6895760--6895803 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
6895750 TGTAACCTTG
6895760 TCCATGCTTATCCTTCTTAATC
1 TCCATGCTTATCCTTCTTAATC
6895782 TCCATGCTTATCCTTCTTAATC
1 TCCATGCTTATCCTTCTTAATC
6895804 GAATGATTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.05, T:0.45
Consensus pattern (22 bp):
TCCATGCTTATCCTTCTTAATC
Found at i:6898675 original size:26 final size:22
Alignment explanation
Indices: 6898634--6898691 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
6898624 TATTATTTAT
6898634 TTTTATTTTTTTTCTTTCTCTTTC
1 TTTT-TTTTTTTT-TTTCTCTTTC
* *
6898658 --CTTTTTTTTTTGTCTCTTTC
1 TTTTTTTTTTTTTTTCTCTTTC
6898678 TTTTTTTTTTTTTT
1 TTTTTTTTTTTTTT
6898692 CTTCTTCTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 9 0.32
21 8 0.29
22 11 0.39
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTTTTTTTCTCTTTC
Done.