Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 42 of 109
Found at i:6898685 original size:19 final size:19
Alignment explanation
Indices: 6898639--6898694 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
6898629 TTTATTTTTA
6898639 TTTTTTTTCTTTCTCTTTCC
1 TTTTTTTT-TTTCTCTTTCC
*
6898659 TTTTTTTTTTGTCTCTTTCT
1 TTTTTTTTTT-TCTCTTTCC
*
6898679 TTTTTTTTTTTTTCTT
1 TTTTTTTTTTTCTCTT
6898695 CTTCTCTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 7 0.21
20 26 0.79
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTTTCTCTTTCC
Found at i:6898688 original size:20 final size:19
Alignment explanation
Indices: 6898639--6898694 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
6898629 TTTATTTTTA
*
6898639 TTTTTTTTCTTTCTCTTTCC
1 TTTTTTTTTTTTCTCTTT-C
*
6898659 TTTTTTTTTTGTCTCTTTC
1 TTTTTTTTTTTTCTCTTTC
*
6898678 TTTTTTTTTTTTTTCTT
1 TTTTTTTTTTTTCTCTT
6898695 CTTCTCTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTTTTCTCTTTC
Found at i:6898704 original size:26 final size:25
Alignment explanation
Indices: 6898633--6898704 Score: 71
Period size: 24 Copynumber: 3.0 Consensus size: 25
6898623 TTATTATTTA
*
6898633 TTTTTATTTTTTTTCTT-TC-TCTT
1 TTTTTTTTTTTTTTCTTCTCTTCTT
* *
6898656 TCCTTTTTTTTTTGTC-TCT-TTCTT
1 T-TTTTTTTTTTTTTCTTCTCTTCTT
6898680 TTTTTTTTTTTTCTTCTTCTCTTCT
1 TTTTTTTTTTTT-TTCTTCTCTTCT
6898705 CCGATGCATT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
23 12 0.32
24 19 0.50
25 3 0.08
26 4 0.11
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.79
Consensus pattern (25 bp):
TTTTTTTTTTTTTTCTTCTCTTCTT
Found at i:6900137 original size:12 final size:12
Alignment explanation
Indices: 6900120--6900164 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
6900110 TTTTCTTCAA
6900120 AATAAAAAAATT
1 AATAAAAAAATT
*
6900132 AATAAAACAATT
1 AATAAAAAAATT
6900144 AAT-AAAAAATT
1 AATAAAAAAATT
*
6900155 -TTAAAAAAAT
1 AATAAAAAAAT
6900165 AAAATATGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 1 0.03
11 14 0.48
12 14 0.48
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAAAAAAATT
Found at i:6900154 original size:11 final size:11
Alignment explanation
Indices: 6900124--6900154 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
6900114 CTTCAAAATA
6900124 AAAAAATTAAT
1 AAAAAATTAAT
6900135 AAAACAATTAAT
1 AAAA-AATTAAT
6900147 AAAAAATT
1 AAAAAATT
6900155 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAAATTAAT
Found at i:6901083 original size:14 final size:14
Alignment explanation
Indices: 6901064--6901099 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
6901054 TAAAATATTT
6901064 TAAAAATAATTTAA
1 TAAAAATAATTTAA
6901078 TAAAAAT--TTTAA
1 TAAAAATAATTTAA
6901090 TAAAAA-AATT
1 TAAAAATAATT
6901100 AAAAGCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 11 0.55
13 2 0.10
14 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAAATAATTTAA
Found at i:6901088 original size:12 final size:12
Alignment explanation
Indices: 6901053--6901095 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
6901043 TTTAGCAAAT
6901053 ATAAAATATTTTA
1 ATAAAA-ATTTTA
6901066 A-AAATAA-TTTA
1 ATAAA-AATTTTA
6901077 ATAAAAATTTTA
1 ATAAAAATTTTA
6901089 ATAAAAA
1 ATAAAAA
6901096 AATTAAAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
11 7 0.26
12 18 0.67
13 2 0.07
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAAAAATTTTA
Found at i:6901101 original size:24 final size:24
Alignment explanation
Indices: 6901053--6901101 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
6901043 TTTAGCAAAT
* *
6901053 ATAAAATATTTTAAAAATAATTTA
1 ATAAAATATTTTAAAAAAAAATTA
6901077 ATAAAA-ATTTTAATAAAAAAATTA
1 ATAAAATATTTTAA-AAAAAAATTA
6901101 A
1 A
6901102 AAGCAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATAAAATATTTTAAAAAAAAATTA
Found at i:6901840 original size:6 final size:6
Alignment explanation
Indices: 6901816--6901868 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
6901806 CGATATAATA
* * *
6901816 TTAAAT TTAAGT TTGAAT TTAAAT TTAATT TTAAAT TTAAAGT TTAAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAA-T TT-AAAT
6901866 TTA
1 TTA
6901869 GTTCGAATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 30 0.77
7 6 0.15
8 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (6 bp):
TTAAAT
Found at i:6905378 original size:21 final size:22
Alignment explanation
Indices: 6905348--6905410 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
6905338 ATCCATTTCG
*
6905348 ATTTCATTTAATATATATAATAT
1 ATTT-ATTTAATATATATTATAT
6905371 ATTT-TTTAAT-TAT-TTATAT
1 ATTTATTTAATATATATTATAT
*
6905390 ATTTATATAA-ATATATTATAT
1 ATTTATTTAATATATATTATAT
6905411 TAAAAAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
19 9 0.26
20 10 0.29
21 12 0.34
23 4 0.11
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTATTTAATATATATTATAT
Found at i:6905469 original size:29 final size:29
Alignment explanation
Indices: 6905436--6905506 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
6905426 TAATATTTTG
* *
6905436 ATTTAAAATATTAATT-TAATAAAATTTAT
1 ATTTAAAATA-TAATTAAAATAAAATTTAC
* * *
6905465 ATTTATATTATAATTAAAATATAATTTAC
1 ATTTAAAATATAATTAAAATAAAATTTAC
6905494 ATTTAAAA-ATAAT
1 ATTTAAAATATAAT
6905507 ATTTTATAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
28 10 0.29
29 24 0.71
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTTAAAATATAATTAAAATAAAATTTAC
Found at i:6905473 original size:41 final size:41
Alignment explanation
Indices: 6905381--6905492 Score: 106
Period size: 41 Copynumber: 2.7 Consensus size: 41
6905371 ATTTTTTAAT
*
6905381 TATTTATATATTTATATAAATATATT-ATATTAAAAAAATATTA
1 TATTTATAT-TTTATTTAAA-ATATTAAT-TTAAAAAAATATTA
* * *
6905424 T-GTAATATTTTGATTTAAAATATTAATTTAATAAAAT-TTA
1 TATTTATATTTT-ATTTAAAATATTAATTTAAAAAAATATTA
* *
6905464 TATTTATATTATAATTAAAATA-TAATTTA
1 TATTTATATTTTATTTAAAATATTAATTTA
6905493 CATTTAAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
39 7 0.12
40 13 0.22
41 24 0.41
42 13 0.22
43 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (41 bp):
TATTTATATTTTATTTAAAATATTAATTTAAAAAAATATTA
Found at i:6906003 original size:11 final size:11
Alignment explanation
Indices: 6905989--6906018 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
6905979 TTTTTAAAAT
6905989 AATTTAATAAA
1 AATTTAATAAA
6906000 AATTTTAATAAA
1 AA-TTTAATAAA
6906012 AATTTAA
1 AATTTAA
6906019 AATCAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATTTAATAAA
Found at i:6906006 original size:12 final size:12
Alignment explanation
Indices: 6905991--6906016 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6905981 TTTAAAATAA
6905991 TTTAATAAAAAT
1 TTTAATAAAAAT
6906003 TTTAATAAAAAT
1 TTTAATAAAAAT
6906015 TT
1 TT
6906017 AAAATCAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTAATAAAAAT
Found at i:6906015 original size:23 final size:24
Alignment explanation
Indices: 6905971--6906018 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
6905961 TTTAGCCAAT
*
6905971 ATAAAATATTTTTAAAATAATTTA
1 ATAAAATATTTTTAAAAAAATTTA
6905995 ATAAAA-A-TTTTAATAAAAATTTA
1 ATAAAATATTTTTAA-AAAAATTTA
6906018 A
1 A
6906019 AATCAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 10 0.45
24 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
ATAAAATATTTTTAAAAAAATTTA
Found at i:6909398 original size:14 final size:14
Alignment explanation
Indices: 6909379--6909415 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6909369 ATAAATATTA
6909379 TATTAAATTAAAAT
1 TATTAAATTAAAAT
6909393 TATTAAATT--AAT
1 TATTAAATTAAAAT
6909405 T-TTAAATTAAA
1 TATTAAATTAAA
6909416 TCAATTACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 7 0.33
12 4 0.19
13 1 0.05
14 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TATTAAATTAAAAT
Found at i:6909402 original size:19 final size:19
Alignment explanation
Indices: 6909374--6909413 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6909364 ATTTTATAAA
*
6909374 TATTATATTAAATTAAAAT
1 TATTAAATTAAATTAAAAT
* *
6909393 TATTAAATTAATTTTAAAT
1 TATTAAATTAAATTAAAAT
6909412 TA
1 TA
6909414 AATCAATTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAATTAAATTAAAAT
Found at i:6909436 original size:2 final size:2
Alignment explanation
Indices: 6909429--6909463 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6909419 ATTACGGTTT
6909429 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6909464 GAGTTAGATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6909821 original size:23 final size:22
Alignment explanation
Indices: 6909774--6909820 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
6909764 TAATTTGTAG
6909774 AATTTCATATCTTTGTAAGTTAA
1 AATTTCATA-CTTTGTAAGTTAA
6909797 AATTTCATA-TTTGATAAGTTAA
1 AATTTCATACTTTG-TAAGTTAA
6909819 AA
1 AA
6909821 AAATTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 9 0.39
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (22 bp):
AATTTCATACTTTGTAAGTTAA
Found at i:6909909 original size:32 final size:34
Alignment explanation
Indices: 6909870--6909938 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
6909860 AATATATTAC
*
6909870 AAAAATTTT-TAAA-TTTTGGGATATACAAATCT
1 AAAAATTTTAAAAAGTTTTGGGATATACAAATCT
* *
6909902 AAAAATTTTAAAAAGTTTTGGGATATATAATTCT
1 AAAAATTTTAAAAAGTTTTGGGATATACAAATCT
6909936 AAA
1 AAA
6909939 GTGTTTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 9 0.28
33 3 0.09
34 20 0.62
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.39
Consensus pattern (34 bp):
AAAAATTTTAAAAAGTTTTGGGATATACAAATCT
Found at i:6917993 original size:24 final size:24
Alignment explanation
Indices: 6917961--6918012 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
6917951 CAAAAGACTG
6917961 AATTTTCATTTTTAAATGTACTTT
1 AATTTTCATTTTTAAATGTACTTT
6917985 AATTTTCATTTTTAAATGTACTTT
1 AATTTTCATTTTTAAATGTACTTT
6918009 AATT
1 AATT
6918013 GATAAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.58
Consensus pattern (24 bp):
AATTTTCATTTTTAAATGTACTTT
Found at i:6925783 original size:20 final size:21
Alignment explanation
Indices: 6925749--6925796 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
6925739 TGATAAATGA
6925749 ATTTATTATTTTAAAATAATT
1 ATTTATTATTTTAAAATAATT
*
6925770 ATTTATTA-TTTAAAATAAAT
1 ATTTATTATTTTAAAATAATT
*
6925790 AATTATT
1 ATTTATT
6925797 TAAATAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTATTATTTTAAAATAATT
Found at i:6930103 original size:2 final size:2
Alignment explanation
Indices: 6930098--6930122 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6930088 CTTCTGTGTG
6930098 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6930123 GTATCATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6938052 original size:13 final size:13
Alignment explanation
Indices: 6938034--6938058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6938024 GAAAAAAAAA
6938034 TGGGGATCCTAAG
1 TGGGGATCCTAAG
6938047 TGGGGATCCTAA
1 TGGGGATCCTAA
6938059 TTCCTTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGGGGATCCTAAG
Found at i:6939070 original size:11 final size:11
Alignment explanation
Indices: 6939054--6939093 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
6939044 AATCTCATAA
6939054 GAGATTTATTT
1 GAGATTTATTT
* *
6939065 GAGATTTGTTA
1 GAGATTTATTT
6939076 GAGATTTATTT
1 GAGATTTATTT
*
6939087 GGGATTT
1 GAGATTT
6939094 GTCATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (11 bp):
GAGATTTATTT
Found at i:6939081 original size:22 final size:22
Alignment explanation
Indices: 6939053--6939095 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
6939043 AAATCTCATA
6939053 AGAGATTTATTTGAGATTTGTT
1 AGAGATTTATTTGAGATTTGTT
*
6939075 AGAGATTTATTTGGGATTTGT
1 AGAGATTTATTTGAGATTTGT
6939096 CATATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (22 bp):
AGAGATTTATTTGAGATTTGTT
Found at i:6939210 original size:50 final size:52
Alignment explanation
Indices: 6939127--6939274 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 52
6939117 GAAGATTTGT
* * *
6939127 AAAAGAAAAATTTCAAGAGAAAGATGATTCTTAATAGGTAAGTTTGACTTAC
1 AAAAGAAAAATTTCAAAAGAAAGAGGATTCTTAATAGGCAAGTTTGACTTAC
*
6939179 AAAA-AAAAATTTTAAAAGAAAG-GGATTCTTAATAGGCAAGTTTGACTTAC
1 AAAAGAAAAATTTCAAAAGAAAGAGGATTCTTAATAGGCAAGTTTGACTTAC
* * * * *
6939229 AAGAGAAGAA-TTC-TAAGATGAGAGAGATTCTTAATTGGCAAGTTTG
1 AAAAGAAAAATTTCAAAAGA-AAGAG-GATTCTTAATAGGCAAGTTTG
6939275 TATGATTATA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.05
50 33 0.40
51 21 0.26
52 24 0.29
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (52 bp):
AAAAGAAAAATTTCAAAAGAAAGAGGATTCTTAATAGGCAAGTTTGACTTAC
Found at i:6939269 original size:52 final size:50
Alignment explanation
Indices: 6939127--6939274 Score: 163
Period size: 52 Copynumber: 2.9 Consensus size: 50
6939117 GAAGATTTGT
* *
6939127 AAAAGAAAAATT-TCAAGAGAAAGATGATTCTTAATAGGTAAGTTTGACTTAC
1 AAAA-AAAAATTCT-AAAAGAAAGA-GATTCTTAATAGGCAAGTTTGACTTAC
* *
6939179 AAAAAAAAATTTTAAAAGAAAGGGATTCTTAATAGGCAAGTTTGACTTAC
1 AAAAAAAAATTCTAAAAGAAAGAGATTCTTAATAGGCAAGTTTGACTTAC
* * * * *
6939229 AAGAGAAGAATTCTAAGATGAGAGAGATTCTTAATTGGCAAGTTTG
1 AA-AAAAAAATTCTAA-AAGAAAGAGATTCTTAATAGGCAAGTTTG
6939275 TATGATTATA
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
50 28 0.34
51 25 0.30
52 30 0.36
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (50 bp):
AAAAAAAAATTCTAAAAGAAAGAGATTCTTAATAGGCAAGTTTGACTTAC
Found at i:6939797 original size:31 final size:31
Alignment explanation
Indices: 6939759--6939843 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
6939749 AGGCTTTTAG
*
6939759 CCCAACAAATGGTATCAGAGCTGTGGTAATC
1 CCCAACAAGTGGTATCAGAGCTGTGGTAATC
* **
6939790 CCCAACAAGTGTTATCAGAGCTGTGGTGTTC
1 CCCAACAAGTGGTATCAGAGCTGTGGTAATC
*
6939821 CCCAACAAGTGGTATCAAAGCTG
1 CCCAACAAGTGGTATCAGAGCTG
6939844 AAGGTTCGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (31 bp):
CCCAACAAGTGGTATCAGAGCTGTGGTAATC
Found at i:6940171 original size:11 final size:11
Alignment explanation
Indices: 6940155--6940194 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
6940145 AATCCCATAA
6940155 GAGATTTGTTT
1 GAGATTTGTTT
*
6940166 GAGATTTGTTA
1 GAGATTTGTTT
6940177 GAGATTTGTTT
1 GAGATTTGTTT
6940188 GAGATTT
1 GAGATTT
6940195 ATCAGATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:6940309 original size:52 final size:52
Alignment explanation
Indices: 6940230--6940346 Score: 144
Period size: 52 Copynumber: 2.2 Consensus size: 52
6940220 AGACTTGTAA
* * * * * *
6940230 AAAAAGAATTTCAAGAGAAAGATGATTCTTAATAGGTAAGTTTGATTTACAAG
1 AAAAA-AATTTTAAAAGAAAAAGGATTCTTAATAGGCAAGTTTGACTTACAAG
*
6940283 AAAAAAATTTTAAAAGAAAAAGGATTCTTAATAGGCAAGTTTGACTTACAGG
1 AAAAAAATTTTAAAAGAAAAAGGATTCTTAATAGGCAAGTTTGACTTACAAG
* *
6940335 AGAAGAATTTTA
1 AAAAAAATTTTA
6940347 GAGAAGGGTT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
52 50 0.91
53 5 0.09
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (52 bp):
AAAAAAATTTTAAAAGAAAAAGGATTCTTAATAGGCAAGTTTGACTTACAAG
Found at i:6942725 original size:19 final size:19
Alignment explanation
Indices: 6942703--6942741 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
6942693 TAATAAAAAA
*
6942703 TTTAATATGATATTCAAAT
1 TTTAATATAATATTCAAAT
* *
6942722 TTTAATGTAATATTTAAAT
1 TTTAATATAATATTCAAAT
6942741 T
1 T
6942742 ATAAATTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TTTAATATAATATTCAAAT
Found at i:6942843 original size:27 final size:29
Alignment explanation
Indices: 6942807--6942886 Score: 76
Period size: 27 Copynumber: 2.9 Consensus size: 29
6942797 AACATATGTC
* *
6942807 ATATAAATAATTTTTTAAATAT-CATATT
1 ATATTAATAATTTTTTAAATATAAATATT
* * *
6942835 A-ATTAATAAATTTAT-AATTTAAATATT
1 ATATTAATAATTTTTTAAATATAAATATT
* *
6942862 ATATTAATAATTTTTAAAATTTAAA
1 ATATTAATAATTTTTTAAATATAAA
6942887 CATCACATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.10
27 17 0.41
28 12 0.29
29 8 0.20
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATTAATAATTTTTTAAATATAAATATT
Found at i:6945281 original size:24 final size:24
Alignment explanation
Indices: 6945231--6945281 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
6945221 ACTTGGCGCT
* * *
6945231 TTTAATTTATTTTATTTTTATATC
1 TTTAATATATTTTATTTTAATAGC
6945255 TTTAATAT-TTTTATTTGTAATAGC
1 TTTAATATATTTTATTT-TAATAGC
6945279 TTT
1 TTT
6945282 TGGTTTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (24 bp):
TTTAATATATTTTATTTTAATAGC
Found at i:6945927 original size:33 final size:33
Alignment explanation
Indices: 6945858--6945937 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
6945848 TTTTATATAA
* *
6945858 ATATGATATGAATACATAAATTTTTAATATTTT
1 ATATGATATAAATACATAAATTATTAATATTTT
* *
6945891 ATATGATATAAATATATAACTTATTAA-ATTTAT
1 ATATGATATAAATACATAAATTATTAATATTT-T
*
6945924 ATATAAATATAAAT
1 ATAT-GATATAAAT
6945938 TTATTGCTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
32 4 0.10
33 28 0.70
34 8 0.20
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.45
Consensus pattern (33 bp):
ATATGATATAAATACATAAATTATTAATATTTT
Found at i:6961217 original size:13 final size:13
Alignment explanation
Indices: 6961181--6961232 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
6961171 ATATATATAT
*
6961181 TATATTAA-TAAA
1 TATATTAATTTAA
*
6961193 AATATT-ATTTAA
1 TATATTAATTTAA
*
6961205 TATTTTAATTTAA
1 TATATTAATTTAA
*
6961218 GATATTAATTTAA
1 TATATTAATTTAA
6961231 TA
1 TA
6961233 AAAATATTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
11 1 0.03
12 12 0.39
13 18 0.58
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TATATTAATTTAA
Found at i:6961256 original size:42 final size:42
Alignment explanation
Indices: 6961177--6961290 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 42
6961167 ATTTATATAT
* *
6961177 ATATT-ATATTAATAAAAATATTATTTAATATTTTAATTTAAG
1 ATATTAATATTAATAAAAATATTATTTTATATTATAA-TTAAG
*
6961219 ATATTAAT-TTAATAAAAATATTATATTTATA-TATAATTAAT
1 ATATTAATATTAATAAAAATATTAT-TTTATATTATAATTAAG
* * *
6961260 ATA-TAATCTATATTAAAAATAATATTTTATA
1 ATATTAATAT-TAATAAAAATATTATTTTATA
6961291 AATATTGTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
40 4 0.06
41 14 0.22
42 38 0.60
43 7 0.11
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (42 bp):
ATATTAATATTAATAAAAATATTATTTTATATTATAATTAAG
Found at i:6966028 original size:110 final size:110
Alignment explanation
Indices: 6965834--6966046 Score: 399
Period size: 110 Copynumber: 1.9 Consensus size: 110
6965824 CAGTAGACAT
6965834 AAAAAAAATTGTCAGAAATTAGAGCCCTTATGAACATCTTCAAAAGTATCAATTCAAAAGCCATA
1 AAAAAAAATTGTCAGAAATTAGAGCCCTTATGAACATCTTCAAAAGTATCAATTCAAAAGCCATA
6965899 ACTACAGTGGAAGAGAAAATAATGAAAAAGCCATTAAAGATATAA
66 ACTACAGTGGAAGAGAAAATAATGAAAAAGCCATTAAAGATATAA
*
6965944 AAAAAAAATTGTCAGAAATTAGAGGCCTTATGAACATCTTCAAAAGTATCAATTCAAAAGCCATA
1 AAAAAAAATTGTCAGAAATTAGAGCCCTTATGAACATCTTCAAAAGTATCAATTCAAAAGCCATA
* *
6966009 ACTACAGTGGAAGATAAAATAATGAAAAAGTCATTAAA
66 ACTACAGTGGAAGAGAAAATAATGAAAAAGCCATTAAA
6966047 ATAAACTCGC
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 100 1.00
ACGTcount: A:0.51, C:0.13, G:0.14, T:0.23
Consensus pattern (110 bp):
AAAAAAAATTGTCAGAAATTAGAGCCCTTATGAACATCTTCAAAAGTATCAATTCAAAAGCCATA
ACTACAGTGGAAGAGAAAATAATGAAAAAGCCATTAAAGATATAA
Found at i:6969569 original size:21 final size:21
Alignment explanation
Indices: 6969545--6969615 Score: 76
Period size: 20 Copynumber: 3.4 Consensus size: 21
6969535 AATAATTTTT
6969545 AAAATTTTTTGAAAAATTCTAA
1 AAAATTTTTTGAAAAATTCT-A
*
6969567 AAAATCTTTTT--AAAATTCTT
1 AAAAT-TTTTTGAAAAATTCTA
*
6969587 AAAA-TTTTTGAAAATTTCTA
1 AAAATTTTTTGAAAAATTCTA
*
6969607 AAAAATTTT
1 AAAATTTTT
6969616 AAAATGTGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
18 5 0.12
20 15 0.36
21 12 0.29
22 5 0.12
23 5 0.12
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (21 bp):
AAAATTTTTTGAAAAATTCTA
Found at i:6969869 original size:21 final size:20
Alignment explanation
Indices: 6969845--6969895 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
6969835 TTAAAAAATC
6969845 TAAAAAATTAAAATTTTAATA
1 TAAAAAATTAAAATTTTAA-A
*
6969866 TAAATAAA--AAAATTTTCAA
1 TAAA-AAATTAAAATTTTAAA
6969885 -AAAAAATTAAA
1 TAAAAAATTAAA
6969896 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 3 0.12
18 3 0.12
19 4 0.15
20 9 0.35
21 4 0.15
22 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAAAATTAAAATTTTAAA
Found at i:6969903 original size:15 final size:16
Alignment explanation
Indices: 6969885--6969925 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
6969875 AAATTTTCAA
**
6969885 AAAAAATTAAAT-TTC
1 AAAAAATTAAATCCAC
6969900 AAAAAA-TAAATCCAC
1 AAAAAATTAAATCCAC
6969915 AAAAAATTAAA
1 AAAAAATTAAA
6969926 ATTATAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 5 0.23
15 13 0.59
16 4 0.18
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAAATTAAATCCAC
Found at i:6970056 original size:25 final size:25
Alignment explanation
Indices: 6970010--6970057 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
6970000 AAATTTGTTA
* **
6970010 TTTTTTATTTTAACTATTTTTAAGT
1 TTTTTTATTTTAACAAAATTTAAGT
*
6970035 TTTTTTATTTTAAGAAAATTTAA
1 TTTTTTATTTTAACAAAATTTAA
6970058 TTTGATTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTTTTATTTTAACAAAATTTAAGT
Found at i:6970159 original size:21 final size:21
Alignment explanation
Indices: 6970134--6970175 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6970124 TTTCCTTAAT
6970134 TCTTTTAGAATTTTTTAAAAA
1 TCTTTTAGAATTTTTTAAAAA
6970155 TCTTTTAGAATTTTTTAAAAA
1 TCTTTTAGAATTTTTTAAAAA
6970176 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (21 bp):
TCTTTTAGAATTTTTTAAAAA
Found at i:6970202 original size:36 final size:37
Alignment explanation
Indices: 6970151--6970223 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
6970141 GAATTTTTTA
*
6970151 AAAATCTTTTAGAATTTTTTAAA-AAATTTAAAATTT
1 AAAATCTTTTAGAATTTTATAAATAAATTTAAAATTT
* * * *
6970187 AAAATTTTTTTGAATTTTATAAATTATTTTAAAATTT
1 AAAATCTTTTAGAATTTTATAAATAAATTTAAAATTT
6970224 TTATAATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
36 20 0.65
37 11 0.35
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (37 bp):
AAAATCTTTTAGAATTTTATAAATAAATTTAAAATTT
Found at i:6970240 original size:18 final size:18
Alignment explanation
Indices: 6970212--6970351 Score: 70
Period size: 18 Copynumber: 7.8 Consensus size: 18
6970202 TTTATAAATT
6970212 ATTTT-AAAATTTTTATA
1 ATTTTAAAAATTTTTATA
* *
6970229 ATTTTGAAAATTTTATAGA
1 ATTTTAAAAATTTT-TATA
* *** *
6970248 ATTTAAAAAAAAATTAGA
1 ATTTTAAAAATTTTTATA
* *
6970266 ATTTTTTAAAATTTTTAAA
1 A-TTTTAAAAATTTTTATA
* *
6970285 ATTTAAAAAAATTTTATA
1 ATTTTAAAAATTTTTATA
* * * *
6970303 CTTTTTAAGATTTTTTTA
1 ATTTTAAAAATTTTTATA
* *
6970321 A-TTTAAATACTTTT-TA
1 ATTTTAAAAATTTTTATA
**
6970337 ATTTTCTAAATTTTT
1 ATTTTAAAAATTTTT
6970352 TAAAATTATT
Statistics
Matches: 89, Mismatches: 30, Indels: 8
0.70 0.24 0.06
Matches are distributed among these distances:
16 3 0.03
17 24 0.27
18 38 0.43
19 24 0.27
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (18 bp):
ATTTTAAAAATTTTTATA
Found at i:6973798 original size:22 final size:21
Alignment explanation
Indices: 6973743--6973798 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
6973733 TATTTATTTG
* *
6973743 ATAAAAA-AATTAATTGATTA
1 ATAAAAATAATTTATTAATTA
6973763 ATAGAAAATAATTTATTAATTA
1 ATA-AAAATAATTTATTAATTA
6973785 ATGAAAAATAATTT
1 AT-AAAAATAATTT
6973799 TTTTAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 3 0.10
21 4 0.13
22 23 0.74
23 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
ATAAAAATAATTTATTAATTA
Found at i:6973919 original size:18 final size:17
Alignment explanation
Indices: 6973896--6974138 Score: 146
Period size: 18 Copynumber: 14.6 Consensus size: 17
6973886 AATTTTATTT
6973896 ATAAATAATATTATATGA
1 ATAAATAATATTATAT-A
6973914 ATAAATAATA-TACTATTA
1 ATAAATAATATTA-TA-TA
6973932 ATATAAT-ATATTA-ATA
1 ATA-AATAATATTATATA
* *
6973948 A-AAATATTAATATATA
1 ATAAATAATATTATATA
* *
6973964 ATATTATAATA-TAT-TC
1 ATA-AATAATATTATATA
*
6973980 ATAAATAAAATTATATTA
1 ATAAATAATATTATA-TA
6973998 ATAAATAATATTATA-A
1 ATAAATAATATTATATA
*
6974014 ATAAAT-ATA-TA-CTA
1 ATAAATAATATTATATA
*
6974028 ATATATTAATATTA-ATAA
1 ATA-AATAATATTATAT-A
*
6974046 ATAAATAGTATTATATTA
1 ATAAATAATATTATA-TA
6974064 ATAAATAATA-TA-ATA
1 ATAAATAATATTATATA
6974079 AT-AA-AATATTAT-TA
1 ATAAATAATATTATATA
* *
6974093 ATTCAATTAATAAATATTATA
1 A-T-AAATAAT-ATTA-TATA
6974114 AT-AAT-ATATTAT-TA
1 ATAAATAATATTATATA
6974128 ATAAATAATAT
1 ATAAATAATAT
6974139 ATTAATATAT
Statistics
Matches: 177, Mismatches: 19, Indels: 60
0.69 0.07 0.23
Matches are distributed among these distances:
13 4 0.02
14 20 0.11
15 24 0.14
16 32 0.18
17 23 0.13
18 59 0.33
19 10 0.06
20 2 0.01
21 3 0.02
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (17 bp):
ATAAATAATATTATATA
Found at i:6973937 original size:38 final size:36
Alignment explanation
Indices: 6973895--6974162 Score: 138
Period size: 33 Copynumber: 7.8 Consensus size: 36
6973885 TAATTTTATT
6973895 TATAAATAATATTATATGAATAAATAATATACTATTAA
1 TATAAATAATATTATAT-AATAAATAATATA-TATTAA
*
6973933 TAT-AAT-ATATTA-ATAA-AAATATTA-ATATATAA
1 TATAAATAATATTATATAATAAATAATATATAT-TAA
* * *
6973965 TAT-TATAATA-TAT-TCATAAATAAAATTATATT-A
1 TATAAATAATATTATATAATAAATAATA-TATATTAA
*
6973998 -ATAAATAATATTATA-AAT--A-AATATATACTAA
1 TATAAATAATATTATATAATAAATAATATATATTAA
* *
6974029 TAT-ATTAATATTA-ATAAATAAATAGTATTATATT-A
1 TATAAATAATATTATAT-AATAAATAATA-TATATTAA
6974064 -ATAAATAATA-TA-ATAAT-AA-AATAT-TATTAA
1 TATAAATAATATTATATAATAAATAATATATATTAA
* * *
6974094 T-TCAATTAATA-AATATTAT-AATAATATATTATTAA
1 TAT-AAATAATATTATATAATAAATAATATA-TATTAA
* *
6974129 TAAATAATATATTAATATATTAATAAATAATATA
1 T--ATAA-ATAATATTATA-TAATAAATAATATA
6974163 AAGAATAATA
Statistics
Matches: 177, Mismatches: 21, Indels: 61
0.68 0.08 0.24
Matches are distributed among these distances:
29 4 0.02
30 9 0.05
31 27 0.15
32 29 0.16
33 31 0.18
34 15 0.08
35 23 0.13
36 11 0.06
37 5 0.03
38 8 0.05
39 3 0.02
40 3 0.02
41 9 0.05
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (36 bp):
TATAAATAATATTATATAATAAATAATATATATTAA
Found at i:6973962 original size:8 final size:8
Alignment explanation
Indices: 6973935--6974162 Score: 73
Period size: 8 Copynumber: 29.9 Consensus size: 8
6973925 ACTATTAATA
6973935 TAATATAT
1 TAATATAT
6973943 TAATA-A-
1 TAATATAT
6973949 -AA-ATAT
1 TAATATAT
6973955 TAATATA-
1 TAATATAT
6973962 TAATAT-T
1 TAATATAT
6973969 ATAATATAT
1 -TAATATAT
* *
6973978 TCATAAAT
1 TAATATAT
*
6973986 AAAATTATAT
1 -TAA-TATAT
*
6973996 TAATA-AA
1 TAATATAT
6974003 TAATATTAT
1 TAATA-TAT
* *
6974012 AAATA-AA
1 TAATATAT
*
6974019 T-ATATAC
1 TAATATAT
6974026 TAATATAT
1 TAATATAT
6974034 T-A-ATAT
1 TAATATAT
*
6974040 TAATA-AA
1 TAATATAT
*
6974047 TAA-ATAG
1 TAATATAT
*
6974054 TATTATAT
1 TAATATAT
*
6974062 TAATA-AA
1 TAATATAT
*
6974069 TAATATAA
1 TAATATAT
6974077 TAATA-A-
1 TAATATAT
6974083 -AATATTAT
1 TAATA-TAT
6974091 TAAT-TCAAT
1 TAATAT--AT
*
6974100 TAATA-AA
1 TAATATAT
* *
6974107 TATTATAA
1 TAATATAT
6974115 TAATATAT
1 TAATATAT
* *
6974123 TATTAATAAA
1 TAAT-AT-AT
6974133 TAATATAT
1 TAATATAT
6974141 TAATATAT
1 TAATATAT
*
6974149 TAATA-AA
1 TAATATAT
6974156 TAATATA
1 TAATATA
6974163 AAGAATAATA
Statistics
Matches: 163, Mismatches: 28, Indels: 58
0.65 0.11 0.23
Matches are distributed among these distances:
4 1 0.01
5 7 0.04
6 9 0.06
7 47 0.29
8 69 0.42
9 22 0.13
10 8 0.05
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (8 bp):
TAATATAT
Found at i:6973985 original size:66 final size:65
Alignment explanation
Indices: 6973914--6974145 Score: 180
Period size: 66 Copynumber: 3.5 Consensus size: 65
6973904 TATTATATGA
6973914 ATAAATAATA-TACTATTAAT-ATAATATATTAATAAAAATATTAATATATAATATTATAATATA
1 ATAAATAATAGTA-TATTAATAATAATATATTAATAAAAATATTAATATATAATATTATAA-ATA
6973977 TT
64 TT
* * * *
6973979 CATAAATAAAATTATATTAATAAATAATATTATAAATAAATATATACTAATATATTAATA-T-T-
1 -ATAAATAATAGTATATTAAT-AATAATA-TATTAATAAA-A-ATATTAATATA-TAATATTATA
*
6974041 AATA-A
60 AATATT
* * * * *
6974046 ATAAATAGTATTATATTAATAAATAATATAATAATAAAATATTATTAAT-T-CAAT-TAATAAAT
1 ATAAATAATAGTATATTAAT-AATAATATATTAATAAAA-A-TATTAATATATAATATTATAAAT
6974108 ATT
63 ATT
6974111 AT-AATAATA-TATTATTAATAAATAATATATTAATA
1 ATAAATAATAGTA-TATTAAT-AATAATATATTAATA
6974146 TATTAATAAA
Statistics
Matches: 139, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
62 3 0.02
63 3 0.02
64 36 0.26
65 16 0.12
66 42 0.30
67 2 0.01
68 9 0.06
69 10 0.07
70 2 0.01
71 11 0.08
72 5 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (65 bp):
ATAAATAATAGTATATTAATAATAATATATTAATAAAAATATTAATATATAATATTATAAATATT
Found at i:6974116 original size:35 final size:33
Alignment explanation
Indices: 6973989--6974142 Score: 124
Period size: 35 Copynumber: 4.6 Consensus size: 33
6973979 CATAAATAAA
6973989 ATTATATTAATAAATAATATTATAA-ATAAATA-T
1 ATTA-ATTAATAAATAATATTATAATA-AAATATT
* * *
6974022 A-T-ACTAATATATTAATATTAATAA-ATAAATAGT
1 ATTAATTAATA-AATAATATT-ATAATA-AAATATT
*
6974055 ATTATATTAATAAATAATATAATAATAAAATATT
1 ATTA-ATTAATAAATAATATTATAATAAAATATT
* *
6974089 ATTAATTCAATTAATAAATATTATAATAATATATT
1 ATTAATT-AATAAAT-AATATTATAATAAAATATT
*
6974124 ATTAATAAAT-AAT-ATATTA
1 ATTAATTAATAAATAATATTA
6974143 ATATATTAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
30 6 0.06
31 14 0.14
32 12 0.12
33 9 0.09
34 24 0.24
35 31 0.30
36 6 0.06
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (33 bp):
ATTAATTAATAAATAATATTATAATAAAATATT
Found at i:6974176 original size:23 final size:23
Alignment explanation
Indices: 6974101--6974176 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 23
6974091 TAATTCAATT
* *
6974101 AATAAATATTATAATAATATATTA
1 AATAAATAATATAAGAATATA-TA
** *
6974125 TTAATAAATAATATATTAATATATT
1 --AATAAATAATATAAGAATATATA
6974150 AATAAATAATATAAAGAATA-ATA
1 AATAAATAATAT-AAGAATATATA
6974173 AATA
1 AATA
6974177 GTTTTATTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 18 0.42
24 5 0.12
25 1 0.02
26 19 0.44
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (23 bp):
AATAAATAATATAAGAATATATA
Found at i:6974220 original size:19 final size:18
Alignment explanation
Indices: 6974193--6974321 Score: 64
Period size: 19 Copynumber: 6.6 Consensus size: 18
6974183 TTTTAAGTAT
*
6974193 TTTTTATATTAACATAATA
1 TTTTAATATTAA-ATAATA
*
6974212 TTTTAATATTAAATATTA
1 TTTTAATATTAAATAATA
* * *
6974230 TTATTAA-AATATAATTATT
1 TT-TTAATATTA-AATAATA
6974249 TTTTAATATTAATAATTTTAATATA
1 TTTTAATATT-A-AA---T-A-ATA
*
6974274 TTTTAATAATAAATAAT-
1 TTTTAATATTAAATAATA
*
6974291 TTTTAATATTTTAATAATTA
1 TTTTAATA-TTAAATAA-TA
*
6974311 TATTAATATTA
1 TTTTAATATTA
6974322 TTTTTTAAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
17 8 0.10
18 22 0.26
19 27 0.32
20 12 0.14
23 3 0.04
24 1 0.01
25 11 0.13
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTAATATTAAATAATA
Found at i:6974263 original size:20 final size:19
Alignment explanation
Indices: 6974190--6974265 Score: 59
Period size: 18 Copynumber: 4.1 Consensus size: 19
6974180 TTATTTTAAG
*
6974190 TATTTTTT-ATATTAACAT
1 TATTTTTTAATATTAAAAT
* *
6974208 AATATTTTAATATTAAATAT
1 TATTTTTTAATATTAAA-AT
* * *
6974228 TA-TTATTAA-AATATAAT
1 TATTTTTTAATATTAAAAT
6974245 TATTTTTTAATATTAATAAT
1 TATTTTTTAATATTAA-AAT
6974265 T
1 T
6974266 TTAATATATT
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
17 4 0.10
18 16 0.38
19 15 0.36
20 7 0.17
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTTTTAATATTAAAAT
Found at i:6974276 original size:10 final size:9
Alignment explanation
Indices: 6974252--6974309 Score: 59
Period size: 9 Copynumber: 6.6 Consensus size: 9
6974242 AATTATTTTT
*
6974252 TAATATTAA
1 TAATTTTAA
6974261 TAATTTTAA
1 TAATTTTAA
6974270 TATATTTTAA
1 TA-ATTTTAA
*
6974280 TAA--TAAA
1 TAATTTTAA
6974287 TAATTTTTAA
1 TAA-TTTTAA
6974297 T-ATTTTAA
1 TAATTTTAA
6974305 TAATT
1 TAATT
6974310 ATATTAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
7 6 0.15
8 7 0.17
9 15 0.37
10 13 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TAATTTTAA
Found at i:6974299 original size:25 final size:26
Alignment explanation
Indices: 6974249--6974308 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 26
6974239 TATAATTATT
*
6974249 TTTTAAT-ATTAATAATTTTAATATA
1 TTTTAATAATAAATAATTTTAATATA
*
6974274 TTTTAATAATAAATAATTTTTA-ATA
1 TTTTAATAATAAATAATTTTAATATA
6974299 TTTTAATAAT
1 TTTTAATAAT
6974309 TATATTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 20 0.62
26 12 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTAATAATAAATAATTTTAATATA
Found at i:6982018 original size:12 final size:12
Alignment explanation
Indices: 6981997--6982027 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6981987 AAAGTTTTGT
*
6981997 GGAATTTTGGGA
1 GGAATCTTGGGA
6982009 GGAATCTTGGGA
1 GGAATCTTGGGA
6982021 GGAATCT
1 GGAATCT
6982028 GATTTTTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.39, T:0.29
Consensus pattern (12 bp):
GGAATCTTGGGA
Found at i:6997177 original size:16 final size:16
Alignment explanation
Indices: 6997156--6997190 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
6997146 CTAAGCTTTA
*
6997156 TTGCATCTTGACATTG
1 TTGCATCTTAACATTG
6997172 TTGCATCTTAACATTG
1 TTGCATCTTAACATTG
6997188 TTG
1 TTG
6997191 GTCTTTGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (16 bp):
TTGCATCTTAACATTG
Found at i:6999374 original size:13 final size:13
Alignment explanation
Indices: 6999356--6999404 Score: 71
Period size: 13 Copynumber: 3.7 Consensus size: 13
6999346 AATGGAGTTG
6999356 AAATTAAAATCAA
1 AAATTAAAATCAA
*
6999369 AAATTAAAATAAA
1 AAATTAAAATCAA
*
6999382 AAATTAAAATCGAT
1 AAATTAAAATC-AA
6999396 AAATTAAAA
1 AAATTAAAA
6999405 GATTTCATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
13 22 0.69
14 10 0.31
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (13 bp):
AAATTAAAATCAA
Found at i:7005424 original size:78 final size:78
Alignment explanation
Indices: 7005267--7005417 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 78
7005257 TATAAAACTT
*
7005267 TTATATAATTTTTTATTGTAATTGAATTATTATAAAATTGTAATAAAAAGAATTATAAGTGAAAT
1 TTATATAATTTTTTATTGTAATTGAATTATTATAAAATTGAAATAAAAAGAATTATAAGTGAAAT
* *
7005332 GTTTTATAAATTC
66 ATTTCATAAATTC
* *
7005345 TTATATAATTTTTTGTTGTGATT-AATTAATTATAAAATTGAAATTAAAAA-AATTAT-AGATGA
1 TTATATAATTTTTTATTGTAATTGAATT-ATTATAAAATTGAAA-TAAAAAGAATTATAAG-TGA
7005407 AATATTTCATA
63 AATATTTCATA
7005418 TCTTCTTCAT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
77 6 0.09
78 53 0.82
79 6 0.09
ACGTcount: A:0.44, C:0.01, G:0.09, T:0.46
Consensus pattern (78 bp):
TTATATAATTTTTTATTGTAATTGAATTATTATAAAATTGAAATAAAAAGAATTATAAGTGAAAT
ATTTCATAAATTC
Found at i:7008975 original size:68 final size:68
Alignment explanation
Indices: 7008866--7008999 Score: 196
Period size: 68 Copynumber: 2.0 Consensus size: 68
7008856 AAAACGTTTC
* * * ** *
7008866 GTGCTCAGCTCCTTGCTCTAATGATTAGAGATCTCTTAAGAGGACATTTGCTTAGTGTAGTGGTT
1 GTGCTCAGCTCCTTGCTCTAACGATTAAAGATCTCTTAAGAGAACATGAGCTTAGTCTAGTGGTT
7008931 AAA
66 AAA
* *
7008934 GTGCTCAGCTCCTTGCTTTAGCGATTAAAGATCTCTTAAGAGAACATGAGCTTAGTCTAGTGGTT
1 GTGCTCAGCTCCTTGCTCTAACGATTAAAGATCTCTTAAGAGAACATGAGCTTAGTCTAGTGGTT
7008999 A
66 A
7009000 CAGAACTCTT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.34
Consensus pattern (68 bp):
GTGCTCAGCTCCTTGCTCTAACGATTAAAGATCTCTTAAGAGAACATGAGCTTAGTCTAGTGGTT
AAA
Found at i:7010213 original size:3 final size:3
Alignment explanation
Indices: 7010195--7010268 Score: 58
Period size: 3 Copynumber: 24.7 Consensus size: 3
7010185 AGTTTCTTCC
* * * * * * *
7010195 TCA TCA TCC TCC TCA TCA TCA TCA TCC TCT TCC TCC TCA TCA TCC TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
* * *
7010243 TCC TCA TCC TCA TCA CCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
7010269 TTCGTCTTCT
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:7010218 original size:18 final size:18
Alignment explanation
Indices: 7010195--7010256 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
7010185 AGTTTCTTCC
* *
7010195 TCATCATCCTCCTCATCA
1 TCATCATCCTCATCCTCA
* *
7010213 TCATCATCCTCTTCCTCC
1 TCATCATCCTCATCCTCA
7010231 TCATCATCCTCATCCTCA
1 TCATCATCCTCATCCTCA
*
7010249 TCCTCATC
1 TCATCATC
7010257 ACCATCATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.35
Consensus pattern (18 bp):
TCATCATCCTCATCCTCA
Found at i:7010233 original size:24 final size:24
Alignment explanation
Indices: 7010198--7010268 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
7010188 TTCTTCCTCA
7010198 TCATCCTCCTCATCATCATCATCC
1 TCATCCTCCTCATCATCATCATCC
* *
7010222 TCTTCCTCCTCATCATCCTCATCC
1 TCATCCTCCTCATCATCATCATCC
* *
7010246 TCATCCTCATCACCATCATCATC
1 TCATCCTCCTCATCATCATCATC
7010269 TTCGTCTTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (24 bp):
TCATCCTCCTCATCATCATCATCC
Found at i:7012814 original size:22 final size:21
Alignment explanation
Indices: 7012764--7012820 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 21
7012754 ATCATTATTT
*
7012764 TATATATAAATTTATTTAAATA
1 TATATA-AAATTTATTTAAAAA
*
7012786 TAT-TAAAATTTTTATTAAAAA
1 TATATAAAATTTAT-TTAAAAA
7012807 TATATAAAAATTTA
1 TATAT-AAAATTTA
7012821 AAATTTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 4 0.14
23 7 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATAAAATTTATTTAAAAA
Found at i:7012820 original size:21 final size:20
Alignment explanation
Indices: 7012764--7012820 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 20
7012754 ATCATTATTT
* *
7012764 TATATATAAATTTATTTAAA
1 TATATAAAAATTTATTAAAA
*
7012784 TATATTAAAATTTTTATTAAAAA
1 TATA-TAAAA-ATTTATT-AAAA
7012807 TATATAAAAATTTA
1 TATATAAAAATTTA
7012821 AAATTTAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 4 0.13
21 8 0.27
22 11 0.37
23 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TATATAAAAATTTATTAAAA
Found at i:7013024 original size:17 final size:17
Alignment explanation
Indices: 7013002--7013036 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7012992 AAACTCCCCG
7013002 GACTCCTCATTATTATT
1 GACTCCTCATTATTATT
7013019 GACTCCTCATTATTATT
1 GACTCCTCATTATTATT
7013036 G
1 G
7013037 TTGAGGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (17 bp):
GACTCCTCATTATTATT
Found at i:7015684 original size:21 final size:21
Alignment explanation
Indices: 7015660--7015703 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7015650 CTTTTGAATT
**
7015660 TTTTTATTTTTTTAAATATTA
1 TTTTTATTACTTTAAATATTA
* *
7015681 TTTTTGTTACTTTAAATTTTA
1 TTTTTATTACTTTAAATATTA
7015702 TT
1 TT
7015704 ATTAATATTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTATTACTTTAAATATTA
Found at i:7022050 original size:35 final size:35
Alignment explanation
Indices: 7022011--7022156 Score: 139
Period size: 35 Copynumber: 4.3 Consensus size: 35
7022001 TTTATGGAAG
*
7022011 AGATATTTGCATTTCATGTGCATCATTTTAGGAAA
1 AGATATTTGCATTTCATGTGCATCATTTTAAGAAA
7022046 AGATATTTG----T-AT-T---TCATTTTAAGAAA
1 AGATATTTGCATTTCATGTGCATCATTTTAAGAAA
*
7022072 AGATATTTGCATTTCATATGCATCATTTTAAGAAA
1 AGATATTTGCATTTCATGTGCATCATTTTAAGAAA
* * * *
7022107 AGACATTTGCATTTAATTTGCAGCATCATTTTAAGAGA
1 AGATATTTGCATTTCA--TG-TGCATCATTTTAAGAAA
*
7022145 AGACATTTGCAT
1 AGATATTTGCAT
7022157 CATAATGGTG
Statistics
Matches: 93, Mismatches: 6, Indels: 21
0.77 0.05 0.17
Matches are distributed among these distances:
26 21 0.23
29 1 0.01
30 3 0.03
31 3 0.03
32 1 0.01
35 36 0.39
37 1 0.01
38 27 0.29
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (35 bp):
AGATATTTGCATTTCATGTGCATCATTTTAAGAAA
Found at i:7022062 original size:26 final size:26
Alignment explanation
Indices: 7022033--7022088 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
7022023 TTCATGTGCA
* *
7022033 TCATTTTAGGAAAAGATATTTGTATT
1 TCATTTTAAGAAAAGATATTTGCATT
7022059 TCATTTTAAGAAAAGATATTTGCATT
1 TCATTTTAAGAAAAGATATTTGCATT
7022085 TCAT
1 TCAT
7022089 ATGCATCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (26 bp):
TCATTTTAAGAAAAGATATTTGCATT
Found at i:7022083 original size:61 final size:61
Alignment explanation
Indices: 7022011--7022125 Score: 185
Period size: 61 Copynumber: 1.9 Consensus size: 61
7022001 TTTATGGAAG
* * * * *
7022011 AGATATTTGCATTTCATGTGCATCATTTTAGGAAAAGATATTTGTATTTCATTTTAAGAAA
1 AGATATTTGCATTTCATATGCATCATTTTAAGAAAAGACATTTGCATTTAATTTTAAGAAA
7022072 AGATATTTGCATTTCATATGCATCATTTTAAGAAAAGACATTTGCATTTAATTT
1 AGATATTTGCATTTCATATGCATCATTTTAAGAAAAGACATTTGCATTTAATTT
7022126 GCAGCATCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.43
Consensus pattern (61 bp):
AGATATTTGCATTTCATATGCATCATTTTAAGAAAAGACATTTGCATTTAATTTTAAGAAA
Found at i:7022403 original size:42 final size:42
Alignment explanation
Indices: 7022351--7022625 Score: 277
Period size: 42 Copynumber: 6.5 Consensus size: 42
7022341 ATTTTTAAAG
*
7022351 TTTTCGGTGGTGATATTCGAGTGTTAAGATTTGAATTACATT
1 TTTTCGGTGGTGATATTCGAGTGTTAAGGTTTGAATTACATT
* * *
7022393 TTTTCAGTGGTGATA-TCTGAGTGTTAAGGTTTGGATTACACT
1 TTTTCGGTGGTGATATTC-GAGTGTTAAGGTTTGAATTACATT
* * * * * * *
7022435 TTCTGGGTGGTGATATCCAAGTGTCAAAGTTTGAATTATATT
1 TTTTCGGTGGTGATATTCGAGTGTTAAGGTTTGAATTACATT
* * * *
7022477 TTCTCGATGGTGATATCCGAGTGTTAAGGTCTGAATTACATTT
1 TTTTCGGTGGTGATATTCGAGTGTTAAGGTTTGAATTACA-TT
* *
7022520 TTTTC-GTGGTGATA-TCTGAATGTCAAGGTTTGAATTACATT
1 TTTTCGGTGGTGATATTC-GAGTGTTAAGGTTTGAATTACATT
* * * * * * * *
7022561 TTCTCTGTGGTAATATCCGAATGTGAATGTTTGAATTACATC
1 TTTTCGGTGGTGATATTCGAGTGTTAAGGTTTGAATTACATT
7022603 TTTTCGGTGGTGATATTCGAGTG
1 TTTTCGGTGGTGATATTCGAGTG
7022626 CTAAAACTTT
Statistics
Matches: 189, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
41 9 0.05
42 172 0.91
43 8 0.04
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (42 bp):
TTTTCGGTGGTGATATTCGAGTGTTAAGGTTTGAATTACATT
Found at i:7022593 original size:126 final size:126
Alignment explanation
Indices: 7022351--7022625 Score: 367
Period size: 126 Copynumber: 2.2 Consensus size: 126
7022341 ATTTTTAAAG
* * *
7022351 TTTTCGGTGGTGATATTCGAGTGTTAAGATTTGAATTACATTTTTTCAGTGGTGATATCTGAGTG
1 TTTTCGATGGTGATATTCGAGTGTTAAGATCTGAATTACATTTTTTCAGTGGTGATATCTGAATG
* * * * *
7022416 TTAAGGTTTGGATTACACTTTCTGGGTGGTGATATCCAAGTGTCAAAGTTTGAATTATAT-
66 TCAAGGTTTGAATTACACTTTCTCGGTGGTAATATCCAAGTGTCAAAGTTTGAATTACATC
* *
7022476 TTTCTCGATGGTGATATCCGAGTGTTAAGGTCTGAATTACATTTTTTTC-GTGGTGATATCTGAA
1 TTT-TCGATGGTGATATTCGAGTGTTAAGATCTGAATTACA-TTTTTTCAGTGGTGATATCTGAA
* * * *
7022540 TGTCAAGGTTTGAATTACATTTTCTCTGTGGTAATATCCGAA-TGTGAATGTTTGAATTACATC
64 TGTCAAGGTTTGAATTACACTTTCTCGGTGGTAATATCC-AAGTGTCAAAGTTTGAATTACATC
*
7022603 TTTTCGGTGGTGATATTCGAGTG
1 TTTTCGATGGTGATATTCGAGTG
7022626 CTAAAACTTT
Statistics
Matches: 130, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
125 3 0.02
126 115 0.88
127 12 0.09
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (126 bp):
TTTTCGATGGTGATATTCGAGTGTTAAGATCTGAATTACATTTTTTCAGTGGTGATATCTGAATG
TCAAGGTTTGAATTACACTTTCTCGGTGGTAATATCCAAGTGTCAAAGTTTGAATTACATC
Found at i:7022645 original size:84 final size:83
Alignment explanation
Indices: 7022351--7022663 Score: 294
Period size: 84 Copynumber: 3.7 Consensus size: 83
7022341 ATTTTTAAAG
* * * *
7022351 TTTTCGGTGGTGATATTCGAGTGT-TAAGATTTGAATTACATTTTTTCAGTGGTGATATCTGAGT
1 TTTTCGGTGGTGATATTCGAGTGTAAAAG-TTTGAATTACATTTTCTC-GTGGTAATATCCGAGT
*
7022415 GTTAAGGTTTGGATTACA-C
64 GTTAAGGTTTGAATTACATC
* * * * * *
7022434 TTTCTGGGTGGTGATATCCAAGTGTCAAAGTTTGAATTATATTTTCTCGATGGTGATATCCGAGT
1 TTT-TCGGTGGTGATATTCGAGTGTAAAAGTTTGAATTACATTTTCTCG-TGGTAATATCCGAGT
* *
7022499 GTTAAGGTCTGAATTACATTT
64 GTTAAGGTTTGAATTACA-TC
* * * *
7022520 TTTTC-GTGGTGATA-TCTGAATGTCAAGGTTTGAATTACATTTTCTCTGTGGTAATATCCGAAT
1 TTTTCGGTGGTGATATTC-GAGTGTAAAAGTTTGAATTACATTTTCTC-GTGGTAATATCCGAGT
* *
7022583 GTGAATGTTTGAATTACATC
64 GTTAAGGTTTGAATTACATC
* * * *
7022603 TTTTCGGTGGTGATATTCGAGTGCTAAAACTTT-ATTTGCATTTTTTTCGGTGGTAATATCC
1 TTTTCGGTGGTGATATTCGAGTG-TAAAAGTTTGAATTACA-TTTTCTC-GTGGTAATATCC
7022664 AAAGTCATTT
Statistics
Matches: 189, Mismatches: 30, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
83 11 0.06
84 144 0.76
85 31 0.16
86 3 0.02
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (83 bp):
TTTTCGGTGGTGATATTCGAGTGTAAAAGTTTGAATTACATTTTCTCGTGGTAATATCCGAGTGT
TAAGGTTTGAATTACATC
Found at i:7022645 original size:126 final size:124
Alignment explanation
Indices: 7022351--7022662 Score: 342
Period size: 126 Copynumber: 2.5 Consensus size: 124
7022341 ATTTTTAAAG
* *
7022351 TTTTCGGTGGTGATATTCGAGTGTTAAGATTTGAATTACA-TTTTTTCAGTGGTGATATCTGAGT
1 TTTTCGGTGGTGATATTCGAGTG-TAAAATTT-AATTACATTTTTTTCAGTGGTGATATCTGAAT
* * * * *
7022415 GTTAAGGTTTGGATTACACTTTCTGGGTGGTGATATCCAAGTGTCAAAGTTTGAATTATAT
64 GTCAAGGTTTGAATTACACTTTCTCGGTGGTAATATCCAAGTGTCAAAGTTTGAATTACAT
* * ** *
7022476 TTTCTCGATGGTGATATCCGAGTGTTAAGGTCTGAATTACATTTTTTTC-GTGGTGATATCTGAA
1 TTT-TCGGTGGTGATATTCGAGTG-TAAAAT-TTAATTACATTTTTTTCAGTGGTGATATCTGAA
* * * *
7022540 TGTCAAGGTTTGAATTACATTTTCTCTGTGGTAATATCCGAA-TGTGAATGTTTGAATTACAT
63 TGTCAAGGTTTGAATTACACTTTCTCGGTGGTAATATCC-AAGTGTCAAAGTTTGAATTACAT
* * * *
7022602 CTTTTCGGTGGTGATATTCGAGTGCTAAAACTTTATTTGCATTTTTTTCGGTGGTAATATC
1 -TTTTCGGTGGTGATATTCGAGTG-TAAAA-TTTAATTACATTTTTTTCAGTGGTGATATC
7022663 CAAAGTCATT
Statistics
Matches: 157, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
125 3 0.02
126 130 0.83
127 24 0.15
ACGTcount: A:0.23, C:0.11, G:0.23, T:0.43
Consensus pattern (124 bp):
TTTTCGGTGGTGATATTCGAGTGTAAAATTTAATTACATTTTTTTCAGTGGTGATATCTGAATGT
CAAGGTTTGAATTACACTTTCTCGGTGGTAATATCCAAGTGTCAAAGTTTGAATTACAT
Found at i:7022695 original size:33 final size:32
Alignment explanation
Indices: 7022645--7022837 Score: 136
Period size: 33 Copynumber: 5.6 Consensus size: 32
7022635 TATTTGCATT
* * * *
7022645 TTTTTCGGTGGTAATATCCAAAGTCATTTATA
1 TTTTTCGATGGTGATATCCAAAATCATTTACA
*
7022677 TTTTCTCGATGGTGATATCCGAGTGCTAAAGCTTCATTTGCA
1 TTTT-TCGATGGTGATATCC-A-----AAA---TCATTTACA
* *
7022719 TTTTCTTCGATGGTAATATCCAAAATTATTTACA
1 -TTT-TTCGATGGTGATATCCAAAATCATTTACA
** *
7022753 TTTTTTTATGGTGATATCCAAAATCATTTTTCA
1 TTTTTCGATGGTGATATCCAAAATCA-TTTACA
**
7022786 TTTTTTTATGGTGATATCCAAAATCATTTACA
1 TTTTTCGATGGTGATATCCAAAATCATTTACA
7022818 TCTTTTC-AGTGGTGATATCC
1 T-TTTTCGA-TGGTGATATCC
7022838 GAATGCTAAA
Statistics
Matches: 131, Mismatches: 15, Indels: 29
0.75 0.09 0.17
Matches are distributed among these distances:
32 30 0.23
33 62 0.47
34 8 0.06
37 3 0.02
39 2 0.02
42 8 0.06
43 17 0.13
44 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (32 bp):
TTTTTCGATGGTGATATCCAAAATCATTTACA
Found at i:7022736 original size:76 final size:75
Alignment explanation
Indices: 7022596--7023146 Score: 444
Period size: 76 Copynumber: 7.5 Consensus size: 75
7022586 AATGTTTGAA
* * * * * * *
7022596 TTACATCTTT-TCGGTGGTGATATTCGAGTGCTAAAACTTTATTTGCATTTTTTTCGGTGGTAAT
1 TTACAT-TTTCTCGATGGTGATATCCGAGTGTTAAAACTTCATTTACA-TTTTTTCGATGGTGAT
7022660 ATCCAAAGTCAT
64 ATCCAAAGTCAT
* * * * *
7022672 TTATATTTTCTCGATGGTGATATCCGAGTGCTAAAGCTTCATTTGCATTTTCTTCGATGGTAATA
1 TTACATTTTCTCGATGGTGATATCCGAGTGTTAAAACTTCATTTACATTTT-TTCGATGGTGATA
* *
7022737 TCCAAAATTAT
65 TCCAAAGTCAT
** * *
7022748 TTACATTTT-TTTATGGTGATATCC-------AAAA--TCATTTTTCATTTTTT-TATGGTGATA
1 TTACATTTTCTCGATGGTGATATCCGAGTGTTAAAACTTCA-TTTACATTTTTTCGATGGTGATA
*
7022802 TCCAAAATCAT
65 TCCAAAGTCAT
* * **
7022813 TTACATCTTT-TC-AGTGGTGATATCCGAATGCTAAAACTTCATTTACATTTTTTTCGATGACGA
1 TTACAT-TTTCTCGA-TGGTGATATCCGAGTGTTAAAACTTCATTTACA-TTTTTTCGATGGTGA
*
7022876 TATCCGAAGTCAT
63 TATCCAAAGTCAT
* * * * * * *
7022889 TTGCATCTTT-TCGGTGGTGATATCCGAGCGTTAAAGCTTCATTTATATTTTTT-TATGATGATA
1 TTACAT-TTTCTCGATGGTGATATCCGAGTGTTAAAACTTCATTTACATTTTTTCGATGGTGATA
*
7022952 TCCGAAGTCAT
65 TCCAAAGTCAT
* * *
7022963 TTGCATCTTCTCGATGGTGATATCCGAGTGTTAAAGCTTCATTTACATTTTTTC-AGTGGTGATA
1 TTACATTTTCTCGATGGTGATATCCGAGTGTTAAAACTTCATTTACATTTTTTCGA-TGGTGATA
7023027 TCCGAAA-TCAT
65 TCC-AAAGTCAT
* * * **
7023038 TTACATCTTCTC-AGTGGTGATATTCGAGTGTTAAAAATT-ATTTGTATTTTTT-GATGGTGATA
1 TTACATTTTCTCGA-TGGTGATATCCGAGTGTTAAAACTTCATTTACATTTTTTCGATGGTGATA
7023100 TCCGAAA-TCAT
65 TCC-AAAGTCAT
* * * *
7023111 TTACATCTTCTAGGTGGTGATATTCGAGTGTTAAAA
1 TTACATTTTCTCGATGGTGATATCCGAGTGTTAAAA
7023147 ATCATTTGTA
Statistics
Matches: 405, Mismatches: 46, Indels: 51
0.81 0.09 0.10
Matches are distributed among these distances:
65 25 0.06
66 20 0.05
67 9 0.02
68 3 0.01
73 58 0.14
74 84 0.21
75 82 0.20
76 124 0.31
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.43
Consensus pattern (75 bp):
TTACATTTTCTCGATGGTGATATCCGAGTGTTAAAACTTCATTTACATTTTTTCGATGGTGATAT
CCAAAGTCAT
Found at i:7022770 original size:32 final size:32
Alignment explanation
Indices: 7022710--7022837 Score: 157
Period size: 33 Copynumber: 3.9 Consensus size: 32
7022700 TGCTAAAGCT
* * *
7022710 TCATTTGCATTTTCTTCGATGGTAATATCCAAAA
1 TCATTTACATTTT-TT-TATGGTGATATCCAAAA
*
7022744 TTATTTACATTTTTTTATGGTGATATCCAAAA
1 TCATTTACATTTTTTTATGGTGATATCCAAAA
*
7022776 TCATTTTTCATTTTTTTATGGTGATATCCAAAA
1 TCA-TTTACATTTTTTTATGGTGATATCCAAAA
* *
7022809 TCATTTACATCTTTTCAGTGGTGATATCC
1 TCATTTACATTTTTTTA-TGGTGATATCC
7022838 GAATGCTAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
32 28 0.34
33 44 0.53
34 11 0.13
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (32 bp):
TCATTTACATTTTTTTATGGTGATATCCAAAA
Found at i:7023023 original size:42 final size:42
Alignment explanation
Indices: 7022977--7023354 Score: 142
Period size: 42 Copynumber: 9.4 Consensus size: 42
7022967 ATCTTCTCGA
*
7022977 TGGTGATATCCGAGTGTTAAAGCTTCATTTACATTTTTTCAG
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* *
7023019 TGGTGATATCC----G--AAA---TCATTTACATCTTCTCAG
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* ** ** *
7023052 TGGTGATATTCGAGTGTTAAAAATT-ATTTGTATTTTTTGA-
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* *
7023092 TGGTGATATCC----G--AAA---TCATTTACATCTTCT-AGG
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCA-G
* ** ** *
7023125 TGGTGATATTCGAGTGTTAAA-AATCATTTGTATTTTTTTAG
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* * * * * * *
7023166 TGATGATATTCGAGTGTCAAGGTTTGAATTGCATTTTTTCAG
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* * * *
7023208 TGGTGATATCCTAGTGTTAAAGTTTGAATTACATTTTCTC-G
1 TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
* * *
7023249 ATGGTGATATTCGAGT-TTAAAATTTGAATTTGCATTTGCATTTCTTC-G
1 -TGGTGATATCCGAGTGTT-AAA---G--TTT-CATTTACATTTTTTCAG
* * * * *
7023297 ATGGTGATATCCGAGTATTAAAGCTTGAATTACATTTTCTC-G
1 -TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
*
7023339 ATGGTGATATTCGAGT
1 -TGGTGATATCCGAGT
7023355 TTCCTTCGGT
Statistics
Matches: 256, Mismatches: 49, Indels: 62
0.70 0.13 0.17
Matches are distributed among these distances:
31 2 0.01
32 9 0.04
33 36 0.14
34 3 0.01
36 4 0.02
37 2 0.01
38 1 0.00
39 6 0.02
40 10 0.04
41 43 0.17
42 102 0.40
43 2 0.01
45 2 0.01
47 3 0.01
48 29 0.11
49 2 0.01
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (42 bp):
TGGTGATATCCGAGTGTTAAAGTTTCATTTACATTTTTTCAG
Found at i:7023120 original size:73 final size:74
Alignment explanation
Indices: 7022776--7023162 Score: 440
Period size: 74 Copynumber: 5.2 Consensus size: 74
7022766 ATATCCAAAA
* * * * *
7022776 TCATTTTTCATTTTTTTATGGTGATATCCAAAATCATTTACATCTTTTCAGTGGTGATATCCGAA
1 TCATTTAT-ATTTTTTGATGGTGATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGAG
*
7022841 TGCTAAAACT
65 TGTTAAAACT
* ** * * * *
7022851 TCATTTACATTTTTTTCGATGACGATATCCGAAGTCATTTGCATCTTTTCGGTGGTGATATCCGA
1 TCATTTATA-TTTTTT-GATGGTGATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGA
* *
7022916 GCGTTAAAGCT
64 GTGTTAAAACT
* * * *
7022927 TCATTTATATTTTTTTATGATGATATCCGAAGTCATTTGCATCTTCTC-GATGGTGATATCCGAG
1 TCATTTATATTTTTTGATGGTGATATCCGAAATCATTTACATCTTCTCAG-TGGTGATATCCGAG
*
7022991 TGTTAAAGCT
65 TGTTAAAACT
* * *
7023001 TCATTTACATTTTTTCAGTGGTGATATCCGAAATCATTTACATCTTCTCAGTGGTGATATTCGAG
1 TCATTTATATTTTTTGA-TGGTGATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGAG
*
7023066 TGTTAAAAAT
65 TGTTAAAACT
* *
7023076 T-ATTTGTATTTTTTGATGGTGATATCCGAAATCATTTACATCTTCT-AGGTGGTGATATTCGAG
1 TCATTTATATTTTTTGATGGTGATATCCGAAATCATTTACATCTTCTCA-GTGGTGATATCCGAG
*
7023139 TGTTAAAA-A
65 TGTTAAAACT
*
7023148 TCATTTGTATTTTTT
1 TCATTTATATTTTTT
7023163 TAGTGATGAT
Statistics
Matches: 275, Mismatches: 30, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
72 2 0.01
73 67 0.24
74 81 0.29
75 68 0.25
76 57 0.21
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (74 bp):
TCATTTATATTTTTTGATGGTGATATCCGAAATCATTTACATCTTCTCAGTGGTGATATCCGAGT
GTTAAAACT
Found at i:7023333 original size:48 final size:47
Alignment explanation
Indices: 7023194--7023333 Score: 141
Period size: 48 Copynumber: 3.0 Consensus size: 47
7023184 AAGGTTTGAA
* *
7023194 TTGCATTTTTTC-AGTGGTGATATCCTAGTGTTAAAGTTTGAATTACA-
1 TTGCATTTCTTCGA-TGGTGATATCCGAGT-TTAAAGTTTGAATTACAT
* * *
7023241 -T---TTTC-TCGATGGTGATATTCGAGTTTAAAATTTGAATTTGCAT
1 TTGCATTTCTTCGATGGTGATATCCGAGTTTAAAGTTTGAA-TTACAT
*
7023284 TTGCATTTCTTCGATGGTGATATCCGAGTATTAAAGCTTGAATTACAT
1 TTGCATTTCTTCGATGGTGATATCCGAGT-TTAAAGTTTGAATTACAT
7023332 TT
1 TT
7023334 TCTCGATGGT
Statistics
Matches: 75, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
41 11 0.15
42 19 0.25
43 4 0.05
44 1 0.01
46 1 0.01
47 4 0.05
48 25 0.33
49 10 0.13
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (47 bp):
TTGCATTTCTTCGATGGTGATATCCGAGTTTAAAGTTTGAATTACAT
Found at i:7023409 original size:33 final size:33
Alignment explanation
Indices: 7023367--7023457 Score: 119
Period size: 33 Copynumber: 2.8 Consensus size: 33
7023357 CCTTCGGTGG
* * *
7023367 TGATATCCGAAGTCATTTACATATTCTCGGCGA
1 TGATATCCGAAGTCATTTGCATATTCTCGACAA
* *
7023400 TGATATCCGAAGTCATTTGTATATTCTCGATAA
1 TGATATCCGAAGTCATTTGCATATTCTCGACAA
* *
7023433 TGATATCTGAAGTTATTTGCATATT
1 TGATATCCGAAGTCATTTGCATATT
7023458 TTTTATGGTG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (33 bp):
TGATATCCGAAGTCATTTGCATATTCTCGACAA
Found at i:7023747 original size:54 final size:54
Alignment explanation
Indices: 7023671--7024135 Score: 454
Period size: 54 Copynumber: 8.9 Consensus size: 54
7023661 TTAATAAAAT
* * *
7023671 TTTAAAGTTGTTAAGCCTCTGCTAAGATGAGCCTTTTCTGAAGATAAGAATTTC
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* *** * **
7023725 TTTAAAGTTGTTGAGCCTCTGCTTAGAGGATTTTTTTTTTTAGATAAGAATTTC
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
** * * *
7023779 TTTAAAGTTGTTGAGTTTCTGCTTAGAGGAG-CTTTTTTTAAGATAA-AA-TT-
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* * * *
7023829 TTTAAAATTGTTGAGCCTCTGCTGAGATGAGCATTTTCTGAAGATAAGAATTTT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* * * * *
7023883 TTTAAAGTTATTGAGCCTCTGCTTAGAGGA---TTTTTTTAAGATGAGAATTTC
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* * *
7023934 TTTAAAGTTGTTGAGTCTCTGCTGAGAGGAACCTTTTCTGAAGATAATAATTTC
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* *
7023988 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTAAAGATAA-AATTTTT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAA-TTTC
* * * * * *
7024042 TTTTAAGTTGTTGAACCTCTACTGATATGAGCCTTTT-TCAAGATAA-AA--T-
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
* * * * * *
7024091 TTTAAAGTTGTTGAACATTTGCTGAAATGAGCCTTTT-TCAAGATA
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATA
7024136 TTTTTCAAGA
Statistics
Matches: 351, Mismatches: 52, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
49 40 0.11
50 27 0.08
51 58 0.17
52 4 0.01
53 27 0.08
54 195 0.56
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.41
Consensus pattern (54 bp):
TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTGAAGATAAGAATTTC
Found at i:7023889 original size:158 final size:156
Alignment explanation
Indices: 7023657--7024061 Score: 559
Period size: 158 Copynumber: 2.6 Consensus size: 156
7023647 TTCAAAGTTA
* *
7023657 TTTTTT-A-ATAAAA-TTTTAAAGTTGTTAAGCCTCTGCTAAGATGAGCCTTTTCTGAAGATAAG
1 TTTTTTAAGATAAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTCTGAAGATAAG
* *
7023719 AATTTCTTTAAAGTTGTTGAGCCTCTGCTTAGAGGATTTTTTTTTTTAGATAAGAATTTCTTTAA
66 AATTTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA---TTTTTTTAAGATAAGAATTTCTTTAA
* * *
7023784 AGTTGTTGAGTTTCTGCTTAGAGG-AGCT
128 AGTTGTTGAGTCTCTGCTGAGAGGAACCT
* *
7023812 TTTTTTAAGATAAAATTTTTAAAATTGTTGAGCCTCTGCTGAGATGAGCATTTTCTGAAGATAAG
1 TTTTTTAAGATAAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTCTGAAGATAAG
* *
7023877 AATTTTTTTAAAGTTATTGAGCCTCTGCTTAGAGGATTTTTTTAAGATGAGAATTTCTTTAAAGT
66 AATTTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGATTTTTTTAAGATAAGAATTTCTTTAAAGT
7023942 TGTTGAGTCTCTGCTGAGAGGAACCT
131 TGTTGAGTCTCTGCTGAGAGGAACCT
* * * *
7023968 TTTCTGAAGATAATAATTTCTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTCTAAAGAT
1 TTTTTTAAGATAA-AA-TT-TTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTCTGAAGAT
* *
7024033 AA-AATTTTTTTTTAAGTTGTTGAACCTCT
63 AAGAA-TTTTTTTAAAGTTGTTGAGCCTCT
7024062 ACTGATATGA
Statistics
Matches: 222, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
155 52 0.23
156 15 0.07
157 8 0.04
158 83 0.37
159 64 0.29
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (156 bp):
TTTTTTAAGATAAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTCTGAAGATAAG
AATTTTTTTAAAGTTGTTGAGCCTCTGCTTAGAGGATTTTTTTAAGATAAGAATTTCTTTAAAGT
TGTTGAGTCTCTGCTGAGAGGAACCT
Found at i:7024188 original size:61 final size:62
Alignment explanation
Indices: 7024075--7024249 Score: 185
Period size: 61 Copynumber: 3.0 Consensus size: 62
7024065 GATATGAGCC
* * * * * *
7024075 TTTTTCAAGATAAAATTTTAAAGTTGTTGAACATTTGCTGAAATG-AGCCTTTTTCAAGATA
1 TTTTTCAAGATAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGATGAAGTCTTTTTCAAGATA
*
7024136 TTTTTCAAGATAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGA-GAAGTCTTTTTCAA-AGA
1 TTTTTCAAGATAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGATGAAGTCTTTTTCAAGATA
* *
7024196 ----T-AAGAT-GAATTTTAAAGTTATTAAGCCTCTGCTGAGATGAA-T-TTTTT-AAGATA
1 TTTTTCAAGATAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGATGAAGTCTTTTTCAAGATA
7024249 T
1 T
7024250 AATTTTTAAA
Statistics
Matches: 100, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
52 2 0.02
53 7 0.07
54 30 0.30
55 8 0.08
56 1 0.01
60 3 0.03
61 49 0.49
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (62 bp):
TTTTTCAAGATAGAATTTTAAAGTTGTTGAGCCTCTGCTGAGATGAAGTCTTTTTCAAGATA
Found at i:7024260 original size:48 final size:46
Alignment explanation
Indices: 7024135--7024272 Score: 143
Period size: 54 Copynumber: 2.8 Consensus size: 46
7024125 TTTTCAAGAT
* *
7024135 ATTTTTCAAGATAGAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGA
1 ATTTTTTAAGATA-AATTTTTAAAGTTATTGAGCCTCTGCTGAGAGA
*
7024181 AGTCTTTTTCAAAGATAAGATGAATTTTAAAGTTATTAAGCCTCTGCTGAGATGA
1 A-T-TTTTT--AAGATAA-AT---TTTTAAAGTTATTGAGCCTCTGCTGAGA-GA
7024236 ATTTTTTAAGATATAATTTTTAAAGTTATTGAGCCTC
1 ATTTTTTAAGATA-AATTTTTAAAGTTATTGAGCCTC
7024273 GAATAAGAGG
Statistics
Matches: 77, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 23 0.30
49 1 0.01
50 7 0.09
51 8 0.10
52 1 0.01
53 5 0.06
54 27 0.35
55 3 0.04
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (46 bp):
ATTTTTTAAGATAAATTTTTAAAGTTATTGAGCCTCTGCTGAGAGA
Found at i:7025436 original size:20 final size:20
Alignment explanation
Indices: 7025404--7025465 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 20
7025394 AGATTCTACG
*
7025404 AAAAAAAA-GTTTCCACAAT
1 AAAAAAAATCTTTCCACAAT
**
7025423 AAAAAAAATCTTTCTGC-A-
1 AAAAAAAATCTTTCCACAAT
*
7025441 AAAAAAAATCATT-CA-AAT
1 AAAAAAAATCTTTCCACAAT
7025459 AAAAAAA
1 AAAAAAA
7025466 CACAGTCCCT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
17 1 0.03
18 19 0.56
19 9 0.26
20 5 0.15
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.21
Consensus pattern (20 bp):
AAAAAAAATCTTTCCACAAT
Found at i:7026993 original size:28 final size:29
Alignment explanation
Indices: 7026935--7026993 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
7026925 AATAATATAC
**
7026935 TTTTTAAAAAATAAAATAAAATAAACTAA
1 TTTTTAAAAAATAAAATAAAATAAAAAAA
*
7026964 TTTTTAATAAATAAAA-AAAATAAAAAAA
1 TTTTTAAAAAATAAAATAAAATAAAAAAA
7026992 TT
1 TT
7026994 ATTTTTCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (29 bp):
TTTTTAAAAAATAAAATAAAATAAAAAAA
Found at i:7030898 original size:11 final size:11
Alignment explanation
Indices: 7030884--7030920 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
7030874 ATAATTTAAA
7030884 TTATATTATTT
1 TTATATTATTT
*
7030895 TTATATTTTTT
1 TTATATTATTT
7030906 TTATATTATATT
1 TTATATTAT-TT
7030918 TTA
1 TTA
7030921 AATCATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATATTATTT
Found at i:7030902 original size:22 final size:23
Alignment explanation
Indices: 7030877--7030920 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
7030867 TTTATATATA
7030877 ATTTAAATTATATTAT-TTTTAT
1 ATTTAAATTATATTATATTTTAT
***
7030899 ATTTTTTTTATATTATATTTTA
1 ATTTAAATTATATTATATTTTA
7030921 AATCATCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
ATTTAAATTATATTATATTTTAT
Found at i:7030908 original size:27 final size:27
Alignment explanation
Indices: 7030844--7030917 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 27
7030834 AAAATATAAA
*
7030844 ATATA-TTTTTAAATTTTATTAAATTT
1 ATATATTTTTTAAATTATATTAAATTT
** **
7030870 ATATATAATTTAAATTATATTATTTTT
1 ATATATTTTTTAAATTATATTAAATTT
* *
7030897 ATATTTTTTTTATATTATATT
1 ATATATTTTTTAAATTATATT
7030918 TTAAATCATC
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 5 0.13
27 33 0.87
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (27 bp):
ATATATTTTTTAAATTATATTAAATTT
Found at i:7037605 original size:17 final size:16
Alignment explanation
Indices: 7037547--7037606 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
7037537 TTATAATTAT
*
7037547 TTATATTTATATTTGAA
1 TTATATTTAT-TTTGTA
*
7037564 TT-TGTTTATTTTGTTA
1 TTATATTTATTTTG-TA
* *
7037580 TCATTTTTATTTTAGTA
1 TTATATTTATTTT-GTA
7037597 TTATATTTAT
1 TTATATTTAT
7037607 AATTGTTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 4 0.12
16 8 0.24
17 21 0.62
18 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.67
Consensus pattern (16 bp):
TTATATTTATTTTGTA
Found at i:7038078 original size:17 final size:19
Alignment explanation
Indices: 7038041--7038081 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
7038031 ATAAACATGA
*
7038041 CAAATGATACATTTATTAT
1 CAAATGATACACTTATTAT
7038060 CAAATGATAC-CTT-TTAT
1 CAAATGATACACTTATTAT
7038077 CAAAT
1 CAAAT
7038082 TTTTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
18 2 0.10
19 10 0.48
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (19 bp):
CAAATGATACACTTATTAT
Found at i:7040386 original size:37 final size:36
Alignment explanation
Indices: 7040327--7040424 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 36
7040317 TATTATATTT
** * *
7040327 TATTTTAAAATTATGAAATAATTTTATTAAT-TTAATTA
1 TATTTT-AAATTATTTATTAATTTTATGAATATTAA--A
7040365 TATTTTAAATTATTTATTAATTTTATGAATATTAAA
1 TATTTTAAATTATTTATTAATTTTATGAATATTAAA
* *
7040401 TAATTTAAATTTTTTATTATATTT
1 TATTTTAAATTATTTATTA-ATTT
7040425 ATTTTTTAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
36 18 0.35
37 24 0.46
38 10 0.19
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (36 bp):
TATTTTAAATTATTTATTAATTTTATGAATATTAAA
Found at i:7040417 original size:36 final size:36
Alignment explanation
Indices: 7040345--7040424 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
7040335 AATTATGAAA
* *
7040345 TAATTTTATTAATTTAATTATATTTTAAATTATTTAT
1 TAATTTTATGAATTTAA-TATAATTTAAATTATTTAT
*
7040382 TAATTTTATGAATATTAA-ATAATTTAAATTTTTTAT
1 TAATTTTATGAAT-TTAATATAATTTAAATTATTTAT
7040418 TATATTT
1 TA-ATTT
7040425 ATTTTTTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 18 0.47
37 16 0.42
38 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (36 bp):
TAATTTTATGAATTTAATATAATTTAAATTATTTAT
Found at i:7040446 original size:30 final size:28
Alignment explanation
Indices: 7040401--7040459 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 28
7040391 GAATATTAAA
*
7040401 TAATTTAAATTTTTTATTATATTTATTTTT
1 TAATTTAAATTTTTTA--ATAATTATTTTT
7040431 TAATTT-AATATTTTTAATAATTATTTTT
1 TAATTTAAAT-TTTTTAATAATTATTTTT
7040459 T
1 T
7040460 TCTCATCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 12 0.44
29 3 0.11
30 12 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (28 bp):
TAATTTAAATTTTTTAATAATTATTTTT
Found at i:7040460 original size:30 final size:30
Alignment explanation
Indices: 7040401--7040459 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
7040391 GAATATTAAA
*
7040401 TAATTTAAATTTTTTATTATATTTATTTTT
1 TAATTTAAATTTTTTAATATATTTATTTTT
7040431 TAATTT-AATATTTTTAATA-A-TTATTTTT
1 TAATTTAAAT-TTTTTAATATATTTATTTTT
7040459 T
1 T
7040460 TCTCATCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 9 0.33
29 4 0.15
30 14 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (30 bp):
TAATTTAAATTTTTTAATATATTTATTTTT
Found at i:7040591 original size:18 final size:18
Alignment explanation
Indices: 7040565--7040606 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7040555 ATGATATAAT
*
7040565 ATTAATTTTATTTTTATC
1 ATTAATTTTAATTTTATC
*
7040583 ATTATTTTTAATTTTATC
1 ATTAATTTTAATTTTATC
7040601 A-TAATT
1 ATTAATT
7040607 AATTTCATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTAATTTTAATTTTATC
Found at i:7040627 original size:13 final size:13
Alignment explanation
Indices: 7040609--7040635 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7040599 TCATAATTAA
7040609 TTTCATTAAGCAT
1 TTTCATTAAGCAT
7040622 TTTCATTAAGCAT
1 TTTCATTAAGCAT
7040635 T
1 T
7040636 CAAATAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (13 bp):
TTTCATTAAGCAT
Found at i:7050404 original size:14 final size:15
Alignment explanation
Indices: 7050385--7050414 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7050375 TATAATTTTA
7050385 AATTGTAATT-AATG
1 AATTGTAATTCAATG
7050399 AATTGTAATTCAATG
1 AATTGTAATTCAATG
7050414 A
1 A
7050415 TCAATGATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.40
Consensus pattern (15 bp):
AATTGTAATTCAATG
Found at i:7063771 original size:23 final size:24
Alignment explanation
Indices: 7063727--7063774 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
7063717 ATATAATCAT
7063727 TTTTAAAATATAATATTTAATAAA
1 TTTTAAAATATAATATTTAATAAA
*
7063751 TTTT-AAATTTAA-ATTTCAATAAA
1 TTTTAAAATATAATATTT-AATAAA
7063774 T
1 T
7063775 GTAACCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 14 0.64
24 4 0.18
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTTAAAATATAATATTTAATAAA
Found at i:7063822 original size:35 final size:35
Alignment explanation
Indices: 7063783--7063852 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
7063773 ATGTAACCTT
* *
7063783 TTTTTTTAATCTCAAACTACGACCTCTTATGTAAA
1 TTTTTTTAATCCCAAACTACAACCTCTTATGTAAA
*
7063818 TTTTTTTAATCCCAAACTATAACCTCTTATGTAAA
1 TTTTTTTAATCCCAAACTACAACCTCTTATGTAAA
7063853 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (35 bp):
TTTTTTTAATCCCAAACTACAACCTCTTATGTAAA
Found at i:7066980 original size:13 final size:11
Alignment explanation
Indices: 7066947--7066980 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7066937 AATTTTAAAC
*
7066947 ATATCATTTTT
1 ATATTATTTTT
7066958 ATATTATTTTT
1 ATATTATTTTT
7066969 ATATTATATTTT
1 ATATTAT-TTTT
7066981 GATTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:7079161 original size:29 final size:32
Alignment explanation
Indices: 7079106--7079176 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 32
7079096 ATACACCAAA
* * *
7079106 AATAAAAAAATATTGAATTATACATTTT-TA-
1 AATATAAAAATATTAAATTATAAATTTTATAT
7079136 AA-ATAAAAATATTAAATTGA-AAATTTTATAT
1 AATATAAAAATATTAAATT-ATAAATTTTATAT
7079167 AATATAAAAA
1 AATATAAAAA
7079177 CTAAATATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 20 0.59
30 5 0.15
31 2 0.06
32 7 0.21
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (32 bp):
AATATAAAAATATTAAATTATAAATTTTATAT
Found at i:7087569 original size:2 final size:2
Alignment explanation
Indices: 7087562--7087586 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7087552 GCAGCTCCTA
7087562 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7087587 TGTTTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7097882 original size:27 final size:27
Alignment explanation
Indices: 7097839--7097891 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7097829 AAAATTAAAA
* *
7097839 ATAATGATGAAAATAAAATTAATTATT
1 ATAATAATGAAAATAAAATCAATTATT
7097866 ATAATAAT-AAAATTAAAATCAATTAT
1 ATAATAATGAAAA-TAAAATCAATTAT
7097892 AAAATATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (27 bp):
ATAATAATGAAAATAAAATCAATTATT
Found at i:7103575 original size:3 final size:3
Alignment explanation
Indices: 7103569--7103598 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
7103559 AGAAAAAAAT
7103569 TTA TTA TTTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TT
7103599 TAATGTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7103653 original size:15 final size:14
Alignment explanation
Indices: 7103629--7103675 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
7103619 GAAAACTTGT
*
7103629 AAAATTATAAAACTA
1 AAAATAATAAAA-TA
*
7103644 AAAATAATAAGATAA
1 AAAATAATAAAAT-A
7103659 AAAATAATAAAATA
1 AAAATAATAAAATA
7103673 AAA
1 AAA
7103676 TGAAATATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.18
15 23 0.82
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAATAATAAAATA
Found at i:7103672 original size:5 final size:5
Alignment explanation
Indices: 7103635--7103704 Score: 54
Period size: 5 Copynumber: 13.2 Consensus size: 5
7103625 TTGTAAAATT
* *
7103635 ATAAA ACTAAA A-ATA ATAAG ATAAA A-AATA ATAAA ATAAA ATGAAA
1 ATAAA A-TAAA ATAAA ATAAA ATAAA ATAA-A ATAAA ATAAA AT-AAA
7103681 TATGAAA ATAAA ATAAA ATCAAA A
1 -AT-AAA ATAAA ATAAA AT-AAA A
7103705 AGAAACCTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
4 5 0.09
5 27 0.50
6 16 0.30
7 6 0.11
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:7104635 original size:41 final size:39
Alignment explanation
Indices: 7104531--7104710 Score: 138
Period size: 36 Copynumber: 4.5 Consensus size: 39
7104521 GATGATGATG
7104531 ATAATAATAATAATAATAATAATA--ATAATAATA-A-TA
1 ATAATAATAATAATAATAATAATATGAT-ATAATATACTA
*
7104567 ATAATAATAATAATAATAATAATATGATATGATATACTA
1 ATAATAATAATAATAATAATAATATGATATAATATACTA
* * * *
7104606 ATAATGATAAATAAATAGTACTAATATGATGTAATATACTA
1 ATAATAAT-AAT-AATAATAATAATATGATATAATATACTA
*
7104647 TACTATATAATATGATATAATAATAATAATAGTAATAATAATATACT-
1 -A-TA-AT-A-AT-A-ATAATAATAATAATA-TGAT-ATAATATACTA
* *
7104694 ATTATACT-ATAATAATA
1 ATAATAATAATAATAATA
7104711 TATACAAAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
36 24 0.21
37 5 0.04
38 3 0.03
39 18 0.16
40 3 0.03
41 24 0.21
42 2 0.02
43 3 0.03
44 4 0.03
45 1 0.01
46 15 0.13
47 5 0.04
48 9 0.08
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.36
Consensus pattern (39 bp):
ATAATAATAATAATAATAATAATATGATATAATATACTA
Found at i:7104708 original size:3 final size:3
Alignment explanation
Indices: 7104531--7104590 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
7104521 GATGATGATG
7104531 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7104579 ATA ATA ATA ATA
1 ATA ATA ATA ATA
7104591 TGATATGATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7106238 original size:25 final size:25
Alignment explanation
Indices: 7106210--7106261 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
7106200 TTTGACATGA
* *
7106210 TTTATCGATT-TTTAAATTTAAATTT
1 TTTATAGATTATTTAAATAT-AATTT
*
7106235 TTTATATATTATTTAAATATAATTT
1 TTTATAGATTATTTAAATATAATTT
7106260 TT
1 TT
7106262 AATATATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTATAGATTATTTAAATATAATTT
Found at i:7106266 original size:25 final size:26
Alignment explanation
Indices: 7106220--7106269 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
7106210 TTTATCGATT
* *
7106220 TTTAAATTTAAATTTTTTATATATTA
1 TTTAAATATAAATTTTTAATATATTA
7106246 TTTAAATAT-AATTTTTAATATATT
1 TTTAAATATAAATTTTTAATATATT
7106270 TAAATAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTAAATATAAATTTTTAATATATTA
Found at i:7106272 original size:22 final size:24
Alignment explanation
Indices: 7106228--7106280 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 24
7106218 TTTTTAAATT
*
7106228 TAAATTTTTTATATATTATTTAAA
1 TAAAATTTTTATATATTATTTAAA
*
7106252 TATAATTTTTA-ATA-TATTTAAA
1 TAAAATTTTTATATATTATTTAAA
7106274 TAAAATT
1 TAAAATT
7106281 AGATATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 14 0.54
23 3 0.12
24 9 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TAAAATTTTTATATATTATTTAAA
Found at i:7106332 original size:10 final size:10
Alignment explanation
Indices: 7106308--7106349 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
7106298 TTTTATTTTT
*
7106308 TAAAAATTTA
1 TAAAAATATA
*
7106318 AAAAAATATA
1 TAAAAATATA
*
7106328 TAAAATTA-A
1 TAAAAATATA
7106337 TAAAAATATA
1 TAAAAATATA
7106347 TAA
1 TAA
7106350 TTCAATTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
TAAAAATATA
Found at i:7106334 original size:19 final size:19
Alignment explanation
Indices: 7106310--7106349 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
7106300 TTATTTTTTA
7106310 AAAATTTAA-AAAAATATAT
1 AAAA-TTAATAAAAATATAT
7106329 AAAATTAATAAAAATATAT
1 AAAATTAATAAAAATATAT
7106348 AA
1 AA
7106350 TTCAATTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTAATAAAAATATAT
Found at i:7106454 original size:11 final size:10
Alignment explanation
Indices: 7106440--7106479 Score: 55
Period size: 11 Copynumber: 4.0 Consensus size: 10
7106430 AAATATTATA
7106440 ATTTTAAATT
1 ATTTTAAATT
7106450 AATTTTAAATT
1 -ATTTTAAATT
7106461 -TTTTAAATT
1 ATTTTAAATT
*
7106470 TTTTTAAATT
1 ATTTTAAATT
7106480 TTTGTTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.32
10 9 0.32
11 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
ATTTTAAATT
Found at i:7106466 original size:9 final size:9
Alignment explanation
Indices: 7106441--7106482 Score: 57
Period size: 9 Copynumber: 4.3 Consensus size: 9
7106431 AATATTATAA
7106441 TTTTAAATT
1 TTTTAAATT
7106450 AATTTTAAATT
1 --TTTTAAATT
7106461 TTTTAAATTT
1 TTTTAAA-TT
7106471 TTTTAAATT
1 TTTTAAATT
7106480 TTT
1 TTT
7106483 GTTCTTATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 12 0.40
10 9 0.30
11 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTAAATT
Found at i:7106474 original size:10 final size:10
Alignment explanation
Indices: 7106441--7106482 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
7106431 AATATTATAA
*
7106441 TTTTAAATTAA
1 TTTTAAATT-T
7106452 TTTTAAA-TT
1 TTTTAAATTT
7106461 TTTTAAATTT
1 TTTTAAATTT
7106471 TTTTAAATTT
1 TTTTAAATTT
7106481 TT
1 TT
7106483 GTTCTTATCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 7 0.24
10 15 0.52
11 7 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:7106474 original size:19 final size:20
Alignment explanation
Indices: 7106441--7106482 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
7106431 AATATTATAA
7106441 TTTTAAATTAATTTTAAATT
1 TTTTAAATTAATTTTAAATT
*
7106461 TTTTAAATT-TTTTTAAATT
1 TTTTAAATTAATTTTAAATT
7106480 TTT
1 TTT
7106483 GTTCTTATCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTAAATTAATTTTAAATT
Done.