Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 44 of 109
Found at i:7424203 original size:31 final size:32
Alignment explanation
Indices: 7424162--7424223 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
7424152 CTTCAATTAA
*
7424162 TTTTAAATTAAATTAAATTATTTT-ATTTTAT
1 TTTTAAATTAAATCAAATTATTTTAATTTTAT
* *
7424193 TTTTTAATTAAATCAAATTTTTTTAATTTTA
1 TTTTAAATTAAATCAAATTATTTTAATTTTA
7424224 AAAATTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 21 0.78
32 6 0.22
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (32 bp):
TTTTAAATTAAATCAAATTATTTTAATTTTAT
Found at i:7424574 original size:17 final size:16
Alignment explanation
Indices: 7424552--7424600 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
7424542 TTAATTCAAT
7424552 AATTAATCAATTAATCA
1 AATTAATCAATTAAT-A
* *
7424569 AATTAAACTAATTTATA
1 AATTAATC-AATTAATA
7424586 AATTAATTCAATTAA
1 AATTAA-TCAATTAA
7424601 AATCTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 19 0.73
18 7 0.27
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTAATCAATTAATA
Found at i:7426810 original size:3 final size:3
Alignment explanation
Indices: 7426802--7426913 Score: 70
Period size: 3 Copynumber: 35.7 Consensus size: 3
7426792 ATGGTTCATT
7426802 TTA TTA TTA TTA TTA TTA TTA TT- TTA TATA TT- TTA TTA TTTA TCTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA -TTA T-TA
* * * *
7426848 TTA ATA TT- TTT TTA TTA TTTA TCTA TTCA TGTA TTT TTT TTA -TA TTTA
1 TTA TTA TTA TTA TTA TTA -TTA T-TA TT-A T-TA TTA TTA TTA TTA -TTA
*
7426896 TCTA TTT TTA TTA TTA TT
1 T-TA TTA TTA TTA TTA TT
7426914 TTTTTAGTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
2 8 0.09
3 56 0.63
4 24 0.27
5 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7426860 original size:25 final size:27
Alignment explanation
Indices: 7426832--7426927 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
7426822 ATTTTATATA
7426832 TTTTATTATTTATCTATT-A-ATATTT
1 TTTTATTATTTATCTATTCATATATTT
*
7426857 TTTTATTATTTATCTATTCATGTATTT
1 TTTTATTATTTATCTATTCATATATTT
**
7426884 TTTT-TATATTTATCTATTTTTATTATTAT
1 TTTTAT-TATTTATCTATTCATA-TATT-T
7426913 TTTT-TTAGTTTATCT
1 TTTTATTA-TTTATCT
7426928 GTTTTGAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
25 18 0.30
26 2 0.03
27 22 0.36
28 6 0.10
29 13 0.21
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTATTATTTATCTATTCATATATTT
Found at i:7426893 original size:19 final size:19
Alignment explanation
Indices: 7426871--7426909 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7426861 ATTATTTATC
* *
7426871 TATTCATGTATTTTTTTTA
1 TATTCATCTATTTTTATTA
*
7426890 TATTTATCTATTTTTATTA
1 TATTCATCTATTTTTATTA
7426909 T
1 T
7426910 TATTTTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (19 bp):
TATTCATCTATTTTTATTA
Found at i:7426910 original size:17 final size:16
Alignment explanation
Indices: 7426800--7426919 Score: 79
Period size: 17 Copynumber: 7.3 Consensus size: 16
7426790 ATATGGTTCA
7426800 TTTTATTA-TTATTAT
1 TTTTATTATTTATTAT
*
7426815 TATTATTATTT-TATAT
1 TTTTATTATTTAT-TAT
7426831 ATTTTATTATTTATCTAT
1 -TTTTATTATTTAT-TAT
** *
7426849 TAATATTTTTTTATTAT
1 TTTTA-TTATTTATTAT
* *
7426866 TTATCTATTCATGTATTTT
1 TT-T-TATT-ATTTATTAT
7426885 TTTTA-TATTTATCTAT
1 TTTTATTATTTAT-TAT
7426901 TTTTATTA-TTATT-T
1 TTTTATTATTTATTAT
7426915 TTTTA
1 TTTTA
7426920 GTTTATCTGT
Statistics
Matches: 82, Mismatches: 13, Indels: 21
0.71 0.11 0.18
Matches are distributed among these distances:
14 6 0.07
15 14 0.17
16 17 0.21
17 21 0.26
18 14 0.17
19 10 0.12
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (16 bp):
TTTTATTATTTATTAT
Found at i:7426927 original size:29 final size:27
Alignment explanation
Indices: 7426800--7426925 Score: 96
Period size: 29 Copynumber: 4.4 Consensus size: 27
7426790 ATATGGTTCA
*
7426800 TTTTA-TTATTATTATTATTATTATTT
1 TTTTATTTATTATTTTTATTATTATTT
* *
7426826 TATATATTTTATTATTTATCTATTAATATTT
1 T-TTTA-TTTATTATTT-T-TATTATTATTT
*
7426857 TTTTA-TTATTTATCTATTCATGTATT-TTT
1 TTTTATTTA-TTAT-T-TTTAT-TATTATTT
7426886 TTTATATTTATCTATTTTTATTATTATTT
1 TTT-TATTTAT-TATTTTTATTATTATTT
7426915 TTTTAGTTTAT
1 TTTTA-TTTAT
7426926 CTGTTTTGAA
Statistics
Matches: 79, Mismatches: 7, Indels: 25
0.71 0.06 0.23
Matches are distributed among these distances:
26 1 0.01
27 3 0.04
28 9 0.11
29 35 0.44
30 13 0.16
31 18 0.23
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (27 bp):
TTTTATTTATTATTTTTATTATTATTT
Found at i:7427797 original size:6 final size:6
Alignment explanation
Indices: 7427786--7427831 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
7427776 TCCTTAAAAT
* * *
7427786 TTTTTA TTTTTA TTTTTA ATTTT- GTTTTA -TTTTA TTTTTC TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
7427832 ATGAAATTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 9 0.26
6 25 0.74
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:7433923 original size:407 final size:407
Alignment explanation
Indices: 7433168--7433958 Score: 1195
Period size: 407 Copynumber: 1.9 Consensus size: 407
7433158 AATGTAAATG
* * *
7433168 CTCTGAGTGAGGAACATAAGCATCATTTGAAAAGAAAAATGATAGATATTAAGACACCTCTTAGT
1 CTCTGAGTGAGAAACATAAGCATCATTTGAAAAGAAAAATGACAGATATTAAAACACCTCTTAGT
* * * * * * *
7433233 CAGTTATTTGATACTTTATGAAGAGCTGAGATGATACGACCAGTGAGTGTGCATAGTTATCATAG
66 CAGTTATTTGATACTTTATGAAGAGCCGACATGATACAACCAGTGAGTGCGCACACTTATCATAA
* * * * * * *
7433298 AGCATATATAGCAGGCATTAGTTGTAAATATCATAGTGGAGTAATTGGTCATTTTGTTGAAGCTT
131 AGCATATATAGCAGGCACTAGTTGTAAATATCATAATGAAGCAATTAGTCACTCTGTTGAAGCTT
* * *
7433363 GTGAGCAGTTTCACTAAGAGATATAAAAGCTTTTAGATTCATACCAGATGAAAGTTTATAAAGAG
196 GTGAGCAGTTTCACTAAGAGATAAAAAAGCTCTTAGATTCATACCAGATGAAAGTCTATAAAGAG
* * * *
7433428 GAAGATGACTCAAAAAGTGTGGAAGTATCCATGACTGACAAGCTTGTAAAATTTTTTCCAAAGCT
261 GAAGATGACTCAAAAAATGTGAAAGTATCCATGACTGACAAGCCTGTAAAATTTTTTCCAAAGCC
* * *
7433493 AGTGACGATTCACTGTGGTAACAAGCCAAAGTCAGTCATAGATAAACTTATTTTCAGGTAGCCAA
326 AGTGACGATTCACTATGGTAACAAGCCAAAGTCAGTCATAGACAAACTCATTTTCAGGTAGCCAA
7433558 AGTCAGTCATAGACATA
391 AGTCAGTCATAGACATA
* * *
7433575 CTCTGAGTGAGAAACATGAGCATCATTTGAAGAGAAAAGTGACAGATATTAAAACACCTCTTAGT
1 CTCTGAGTGAGAAACATAAGCATCATTTGAAAAGAAAAATGACAGATATTAAAACACCTCTTAGT
*
7433640 CAGTTATTTGATACTTTATGAAGAGCCGACATGATACAACCAGTGAGTGCGTACACTTATCATAA
66 CAGTTATTTGATACTTTATGAAGAGCCGACATGATACAACCAGTGAGTGCGCACACTTATCATAA
*
7433705 AGCATGTATAGCAGGCACTAGTTGTAAATATCATAATGAAGCAATTAGTCACTCTGTTGAAGCTT
131 AGCATATATAGCAGGCACTAGTTGTAAATATCATAATGAAGCAATTAGTCACTCTGTTGAAGCTT
* * * * *
7433770 GTGAGTAGTTTCATTAAGAGATAAAAAAGCTCTTGGATTCATACTAGATGAAAGTCTATGAAGAG
196 GTGAGCAGTTTCACTAAGAGATAAAAAAGCTCTTAGATTCATACCAGATGAAAGTCTATAAAGAG
* * * * *
7433835 GGAGATGACTCAAAAAATGTGAAAGTATGCATGATTGATAAGCCTGTAAAGTTTTTTCCAAAGCC
261 GAAGATGACTCAAAAAATGTGAAAGTATCCATGACTGACAAGCCTGTAAAATTTTTTCCAAAGCC
*
7433900 AGTGATGATTCACTATGGTAACAAGCCAAAGTCAGTCATAGACAAACTCATTTTCAGGT
326 AGTGACGATTCACTATGGTAACAAGCCAAAGTCAGTCATAGACAAACTCATTTTCAGGT
7433959 CAGTAACTTT
Statistics
Matches: 341, Mismatches: 43, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
407 341 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (407 bp):
CTCTGAGTGAGAAACATAAGCATCATTTGAAAAGAAAAATGACAGATATTAAAACACCTCTTAGT
CAGTTATTTGATACTTTATGAAGAGCCGACATGATACAACCAGTGAGTGCGCACACTTATCATAA
AGCATATATAGCAGGCACTAGTTGTAAATATCATAATGAAGCAATTAGTCACTCTGTTGAAGCTT
GTGAGCAGTTTCACTAAGAGATAAAAAAGCTCTTAGATTCATACCAGATGAAAGTCTATAAAGAG
GAAGATGACTCAAAAAATGTGAAAGTATCCATGACTGACAAGCCTGTAAAATTTTTTCCAAAGCC
AGTGACGATTCACTATGGTAACAAGCCAAAGTCAGTCATAGACAAACTCATTTTCAGGTAGCCAA
AGTCAGTCATAGACATA
Found at i:7439058 original size:7 final size:8
Alignment explanation
Indices: 7439045--7439092 Score: 62
Period size: 9 Copynumber: 5.8 Consensus size: 8
7439035 ACTATGCTTG
7439045 AAAAAAAT
1 AAAAAAAT
7439053 AAAAAAAT
1 AAAAAAAT
7439061 AAAAAAAAT
1 -AAAAAAAT
7439070 GAAAAAAAT
1 -AAAAAAAT
7439079 AAGAAAAA-
1 AA-AAAAAT
7439087 AAAAAA
1 AAAAAA
7439093 CTCAAGGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
7 4 0.11
8 12 0.32
9 21 0.57
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (8 bp):
AAAAAAAT
Found at i:7439079 original size:26 final size:25
Alignment explanation
Indices: 7439043--7439092 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
7439033 GTACTATGCT
7439043 TGAAAAAAATAAAAAAATAAAAAAAA
1 TGAAAAAAATAAAAAAA-AAAAAAAA
*
7439069 TGAAAAAAATAAGAAAAAAAAAAA
1 TGAAAAAAATAAAAAAAAAAAAAA
7439093 CTCAAGGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (25 bp):
TGAAAAAAATAAAAAAAAAAAAAAA
Found at i:7440127 original size:41 final size:41
Alignment explanation
Indices: 7440082--7440280 Score: 242
Period size: 41 Copynumber: 4.9 Consensus size: 41
7440072 GTCAATGAAT
*
7440082 AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGGGGAGC
1 AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGAGGAGC
* * *
7440123 AATTTACTTTCAAAAGTTATGGTGCCTTTGTTTAGAGGAGC
1 AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGAGGAGC
* * *
7440164 AATTTACCTTT-AAAAGTTGTGGTGCCT-TTACTTAGAGGAGC
1 AATTTA-CTTTCAAAAGTTATGATGCCTCTGA-TTAGAGGAGC
* * *
7440205 AATTTACTTTCAAAAGTTATGACGCCTCTGTTTAGAAGAGC
1 AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGAGGAGC
* *
7440246 AATTTATTTTCAAAAGTTGTTGA-GCCTCTGATTAG
1 AATTTACTTTCAAAAGTT-ATGATGCCTCTGATTAG
7440281 TGAAGCTTTG
Statistics
Matches: 137, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
40 5 0.04
41 124 0.91
42 8 0.06
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (41 bp):
AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGAGGAGC
Found at i:7440219 original size:82 final size:82
Alignment explanation
Indices: 7440082--7440280 Score: 269
Period size: 82 Copynumber: 2.4 Consensus size: 82
7440072 GTCAATGAAT
* * **
7440082 AATTTACTTTCAAAAGTTATGATGCCTCTGATTAGGGGAGCAATTTACTTTCAAAAGTTATGGTG
1 AATTTACTTTCAAAAGTTGTGATGCCTCTGATTAGAGGAGCAATTTACTTTCAAAAGTTATGACG
* *
7440147 CCTTTGTTTAGAGGAGC
66 CCTCTGTTTAGAAGAGC
* *
7440164 AATTTACCTTT-AAAAGTTGTGGTGCCT-TTACTTAGAGGAGCAATTTACTTTCAAAAGTTATGA
1 AATTTA-CTTTCAAAAGTTGTGATGCCTCTGA-TTAGAGGAGCAATTTACTTTCAAAAGTTATGA
7440227 CGCCTCTGTTTAGAAGAGC
64 CGCCTCTGTTTAGAAGAGC
*
7440246 AATTTATTTTCAAAAGTTGTTGA-GCCTCTGATTAG
1 AATTTACTTTCAAAAGTTG-TGATGCCTCTGATTAG
7440281 TGAAGCTTTG
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
81 5 0.05
82 88 0.87
83 8 0.08
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (82 bp):
AATTTACTTTCAAAAGTTGTGATGCCTCTGATTAGAGGAGCAATTTACTTTCAAAAGTTATGACG
CCTCTGTTTAGAAGAGC
Found at i:7440605 original size:53 final size:52
Alignment explanation
Indices: 7440527--7440649 Score: 138
Period size: 53 Copynumber: 2.3 Consensus size: 52
7440517 ATTTTATTTT
* *
7440527 TATTTTTTGTATTTTTTATCAATTAATATAGATATTTTATTATTTATTTATTAA
1 TATTTTTT-TATTATTTATCAATTAATATAGATATTTTA-TATTTATCTATTAA
* * ** * **
7440581 TATTTTTTTATTATTTATCTATTAATGTATTTTTTTTATATTTATCTATTTT
1 TATTTTTTTATTATTTATCAATTAATATAGATATTTTATATTTATCTATTAA
7440633 TATTATTTTTATTATTT
1 TATT-TTTTTATTATTT
7440650 TTTGGGTTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
52 15 0.25
53 36 0.61
54 8 0.14
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (52 bp):
TATTTTTTTATTATTTATCAATTAATATAGATATTTTATATTTATCTATTAA
Found at i:7440614 original size:28 final size:27
Alignment explanation
Indices: 7440526--7440649 Score: 121
Period size: 25 Copynumber: 4.7 Consensus size: 27
7440516 CATTTTATTT
* * *
7440526 TTATTTTTTGTATTTTTTATCAATTAA
1 TTATTTTTTTTATTATTTATCTATTAA
** * *
7440553 TATAGATATTTTATTATTTATTTATTAA
1 T-TATTTTTTTTATTATTTATCTATTAA
7440581 -TA-TTTTTTTATTATTTATCTATTAA
1 TTATTTTTTTTATTATTTATCTATTAA
*
7440606 TGTATTTTTTTTA-TATTTATCTATT-T
1 T-TATTTTTTTTATTATTTATCTATTAA
*
7440632 TTATTATTTTTATTATTT
1 TTATTTTTTTTATTATTT
7440650 TTTGGGTTTA
Statistics
Matches: 80, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
25 30 0.38
26 8 0.10
27 15 0.19
28 27 0.34
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (27 bp):
TTATTTTTTTTATTATTTATCTATTAA
Found at i:7440622 original size:19 final size:18
Alignment explanation
Indices: 7440562--7440652 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 18
7440552 ATATAGATAT
7440562 TTTATTATTTATTTATTAATA
1 TTTATTATTT-TTT-TT-ATA
* * * *
7440583 TTTTTTTATTATTTATCTA
1 -TTTATTATTTTTTTTATA
*
7440602 TTAATGTATTTTTTTTATA
1 TTTAT-TATTTTTTTTATA
* *
7440621 TTTATCTATTTTTATTATT
1 TTTAT-TATTTTTTTTATA
7440640 TTTATTATTTTTT
1 TTTATTATTTTTT
7440653 GGGTTTATCT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
18 10 0.19
19 32 0.59
20 1 0.02
21 3 0.06
22 8 0.15
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.73
Consensus pattern (18 bp):
TTTATTATTTTTTTTATA
Found at i:7440991 original size:24 final size:23
Alignment explanation
Indices: 7440929--7440991 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
7440919 CAATTTTAGG
7440929 AATTTGTGAAA-TTTTTTTTAGAA
1 AATTT-TGAAATTTTTTTTTAGAA
** *
7440952 TTTTTTG-CATTCTTTTTTCTAGAA
1 AATTTTGAAATT-TTTTTT-TAGAA
7440976 AATTTTGAAATTTTTT
1 AATTTTGAAATTTTTT
7440992 CAGATTTCGT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
21 1 0.03
22 3 0.10
23 9 0.30
24 14 0.47
25 3 0.10
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.59
Consensus pattern (23 bp):
AATTTTGAAATTTTTTTTTAGAA
Found at i:7441525 original size:3 final size:3
Alignment explanation
Indices: 7441482--7441507 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7441472 AGTTATTTAG
7441482 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
7441508 TCTAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7441559 original size:22 final size:22
Alignment explanation
Indices: 7441534--7441579 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7441524 TAGGTATTCC
7441534 TTAATTTT-TTTTAATTTTAATT
1 TTAATTTTGTTTT-ATTTTAATT
*
7441556 TTAATTTTGTTTTATTTTATTT
1 TTAATTTTGTTTTATTTTAATT
7441578 TT
1 TT
7441580 CTTTTTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (22 bp):
TTAATTTTGTTTTATTTTAATT
Found at i:7441585 original size:22 final size:21
Alignment explanation
Indices: 7441537--7441585 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
7441527 GTATTCCTTA
7441537 ATTTTTTTTAATTTTAATTTT
1 ATTTTTTTTAATTTTAATTTT
*
7441558 AATTTTGTTTT-ATTTTATTTTT
1 -ATTTT-TTTTAATTTTAATTTT
*
7441580 CTTTTT
1 ATTTTT
7441586 AATGAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.04
21 4 0.17
22 15 0.62
23 4 0.17
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (21 bp):
ATTTTTTTTAATTTTAATTTT
Found at i:7441692 original size:18 final size:20
Alignment explanation
Indices: 7441655--7441692 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
7441645 CACTTTTGTT
*
7441655 TAAAAATAAAGTTTCTAAAA
1 TAAAAATAAAGTTTCAAAAA
7441675 TAAAAA-AAA-TTTCAAAAA
1 TAAAAATAAAGTTTCAAAAA
7441693 CATTTTTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 3 0.18
20 6 0.35
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (20 bp):
TAAAAATAAAGTTTCAAAAA
Found at i:7441742 original size:60 final size:55
Alignment explanation
Indices: 7441676--7441810 Score: 135
Period size: 60 Copynumber: 2.3 Consensus size: 55
7441666 TTTCTAAAAT
** *
7441676 AAAAAAAATTTCAAAAACATTTTTAGGGGGGAAAGTTGAAAGTATTAATTTTTCTTGAA
1 AAAAAAAATTTCAAAAACATTTTTA--GGAAAAAGTTGAAAGTATCAATTTTT-TT-AA
* * *
7441735 AATAAAAAAGCTTAAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTTTAA
1 AA-AAAAAA-TTTCAAAA-ACATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTTTAA
*
7441793 AAAATAAAATTTCTAAAA
1 AAAA-AAAATTTCAAAAA
7441811 TAAAAGTTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
56 1 0.02
57 7 0.11
58 8 0.13
59 4 0.06
60 29 0.46
61 6 0.10
62 8 0.13
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.34
Consensus pattern (55 bp):
AAAAAAAATTTCAAAAACATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTTTAA
Found at i:7441762 original size:136 final size:133
Alignment explanation
Indices: 7441611--7441919 Score: 371
Period size: 136 Copynumber: 2.3 Consensus size: 133
7441601 ATAAAATTCC
* *
7441611 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCACTTTTGTTT-AAAAATAAAGTTTCTAAAA
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT-TTTAAAAAATAAAATTTCTAAAA
* ** *
7441675 TAAAAAAAATT-TC-A-AAAA-CATTTTTAGGGGGGAAAGTTGAAAGTATTAATTTTTCTTGAAA
65 T---AAAAATTATCAAGAAAAGCA-TTTT--GAGAAAAAGTTGAAAGTATCAATTTTTCTTG-AA
7441736 ATAAAAAAGCTT
123 AT-AAAAAGCTT
* *
7441748 -AAAAATATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTTTAAAAAATAAAATTTCTAAAAT
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTAAAAAATAAAATTTCTAAAAT
* * *
7441812 AAAAGTTATCAAGAAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAATTAAAAT
66 AAAAATTATCAAGAAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAATAAAAAG
*
7441877 TTT
131 CTT
*
7441880 AAAAAAAATATTTTGA-GGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
7441920 CTTCGTACAA
Statistics
Matches: 151, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
132 29 0.19
133 23 0.15
134 29 0.19
135 4 0.03
136 64 0.42
137 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.35
Consensus pattern (133 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTAAAAAATAAAATTTCTAAAAT
AAAAATTATCAAGAAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAATAAAAAG
CTT
Found at i:7441864 original size:58 final size:58
Alignment explanation
Indices: 7441807--7441919 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
7441797 TAAAATTTCT
* *
7441807 AAAATAAAAGTTATCAAGAAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATAAAA-TT-TCAAAAAAAACATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
* * * *
7441867 AAATTAAAATTTTAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAATAAAATTTCAAAAAAAACATTTTGAGAAAAAGTTGAAAGTATCAATTTT
7441920 CTTCGTACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 37 0.79
59 2 0.04
60 8 0.17
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAATAAAATTTCAAAAAAAACATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:7442826 original size:181 final size:182
Alignment explanation
Indices: 7442549--7442901 Score: 645
Period size: 181 Copynumber: 1.9 Consensus size: 182
7442539 GGTACCAACT
*
7442549 ACTACCAATTTTGGTAGAAGTTCTGGTGGTCCGTACATCACTACTTCATATGACTATGATGCACC
1 ACTACCAAGTTTGGTAGAAGTTCTGGTGGTCCGTACATCACTACTTCATATGACTATGATGCACC
*
7442614 TCTTGATGAATATGGTAATTGCTTATAAATTTTTGTTTACAATTTTTCATTCTTATAATCAATAA
66 TCTCGATGAATATGGTAATTGCTTATAAATTTTTGTTTACAATTTTTCATTCTTATAATCAATAA
* *
7442679 TTTATGATTAATTTTACCA-TTTTTTATTTTTTTTTAAATTAAGTGGTACCA
131 TTTATGATTAATTATACAATTTTTTTATTTTTTTTTAAATTAAGTGGTACCA
7442730 ACTACCAAGTTTGGTAGAAGTTCTGGTGGTCCGTACATCACTACTTCATATGACTATGATGCACC
1 ACTACCAAGTTTGGTAGAAGTTCTGGTGGTCCGTACATCACTACTTCATATGACTATGATGCACC
* *
7442795 TCTCGATGAATGTGGTAATTGCTTATAAATTTTTGTTTACAATTTTTTATTCTTATAATCAATAA
66 TCTCGATGAATATGGTAATTGCTTATAAATTTTTGTTTACAATTTTTCATTCTTATAATCAATAA
7442860 TTTATGATTAATTATACAATTTTTTTATTTTTTTTTAAATTA
131 TTTATGATTAATTATACAATTTTTTTATTTTTTTTTAAATTA
7442902 GGAAACTTGA
Statistics
Matches: 165, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
181 143 0.87
182 22 0.13
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (182 bp):
ACTACCAAGTTTGGTAGAAGTTCTGGTGGTCCGTACATCACTACTTCATATGACTATGATGCACC
TCTCGATGAATATGGTAATTGCTTATAAATTTTTGTTTACAATTTTTCATTCTTATAATCAATAA
TTTATGATTAATTATACAATTTTTTTATTTTTTTTTAAATTAAGTGGTACCA
Found at i:7453167 original size:10 final size:10
Alignment explanation
Indices: 7453152--7453195 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
7453142 TTGATCTCCA
7453152 TTTTCTTTTT
1 TTTTCTTTTT
7453162 TTTTCTCTTTT
1 TTTTCT-TTTT
*
7453173 TTATCTTTTT
1 TTTTCTTTTT
7453183 TTTCATCTTTTT
1 TTT--TCTTTTT
7453195 T
1 T
7453196 GGGCTTATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 12 0.41
11 9 0.31
12 8 0.28
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:7459073 original size:61 final size:61
Alignment explanation
Indices: 7458999--7459123 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
7458989 ATTGTCCCAT
*
7458999 TTTTGTCCTCTTTCGGCTTACTTATAAATATGAAAACTCAGGCACTATGAAACCATATTCA
1 TTTTGTCCCCTTTCGGCTTACTTATAAATATGAAAACTCAGGCACTATGAAACCATATTCA
*
7459060 TTTTGTCCCCTTTCGGCTTACTTATAAATATGGAAACTCAGGCACTATGAAACCATATTCA
1 TTTTGTCCCCTTTCGGCTTACTTATAAATATGAAAACTCAGGCACTATGAAACCATATTCA
7459121 TTT
1 TTT
7459124 AACTCATACC
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (61 bp):
TTTTGTCCCCTTTCGGCTTACTTATAAATATGAAAACTCAGGCACTATGAAACCATATTCA
Found at i:7467005 original size:28 final size:27
Alignment explanation
Indices: 7466973--7467026 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
7466963 TTTGAATTGA
* * *
7466973 ATTAATTAAATTATTTTATTTTATTTTT
1 ATTAATCAAATTAATTT-TTTAATTTTT
7467001 ATTAATCAAATTAATTTTTTAATTTT
1 ATTAATCAAATTAATTTTTTAATTTT
7467027 AAAAATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
ATTAATCAAATTAATTTTTTAATTTTT
Found at i:7467069 original size:21 final size:21
Alignment explanation
Indices: 7466996--7467076 Score: 78
Period size: 21 Copynumber: 3.8 Consensus size: 21
7466986 TTTTATTTTA
7466996 TTTTT-ATTAATCAAATTAAT
1 TTTTTAATTAATCAAATTAAT
7467016 TTTTTAATTTTAA--AAATTAAT
1 TTTTTAA--TTAATCAAATTAAT
** *
7467037 TGATTAAAATTAATTAAATTAAT
1 T--TTTTAATTAATCAAATTAAT
7467060 TTTTTAATTAATCAAAT
1 TTTTTAATTAATCAAAT
7467077 AATAAAATAC
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
20 5 0.10
21 27 0.55
23 17 0.35
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (21 bp):
TTTTTAATTAATCAAATTAAT
Found at i:7467110 original size:12 final size:12
Alignment explanation
Indices: 7467093--7467118 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7467083 ATACATTAAG
7467093 TTAAATTTTATT
1 TTAAATTTTATT
7467105 TTAAATTTTATT
1 TTAAATTTTATT
7467117 TT
1 TT
7467119 TTTCATACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTAAATTTTATT
Found at i:7467342 original size:4 final size:4
Alignment explanation
Indices: 7467333--7467395 Score: 51
Period size: 4 Copynumber: 15.2 Consensus size: 4
7467323 TCATTTTTTA
*
7467333 TAAT TAAT TAA- -AAT TAATT TAA- TAAT CAAT TAAAT TAAT TAAAT TAAAT
1 TAAT TAAT TAAT TAAT TAA-T TAAT TAAT TAAT T-AAT TAAT T-AAT T-AAT
7467382 TAAAT TAAT TAAT T
1 T-AAT TAAT TAAT T
7467396 TGATTAAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
2 2 0.04
3 3 0.06
4 24 0.47
5 22 0.43
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (4 bp):
TAAT
Found at i:7467368 original size:5 final size:5
Alignment explanation
Indices: 7467360--7467393 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
7467350 TTTAATAATC
7467360 AATTA AATT- AATTA AATTA AATTA AATT- AATTA A
1 AATTA AATTA AATTA AATTA AATTA AATTA AATTA A
7467394 TTTGATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATTA
Found at i:7467374 original size:9 final size:9
Alignment explanation
Indices: 7467334--7467403 Score: 68
Period size: 9 Copynumber: 7.2 Consensus size: 9
7467324 CATTTTTTAT
7467334 AATTAATTAA
1 AATTAATT-A
7467344 AATTAATTTAA
1 AATTAA-TT-A
*
7467355 TAATCAATTA
1 -AATTAATTA
7467365 AATTAATTA
1 AATTAATTA
7467374 AATTAAATTA
1 AATT-AATTA
7467384 AATTAATTA
1 AATTAATTA
* *
7467393 ATTTGATTA
1 AATTAATTA
7467402 AA
1 AA
7467404 ATCGAATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
9 25 0.48
10 16 0.31
11 6 0.12
12 5 0.10
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (9 bp):
AATTAATTA
Found at i:7473303 original size:12 final size:12
Alignment explanation
Indices: 7473282--7473311 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7473272 TTGATACGAC
7473282 TGCTGCTGCTGT
1 TGCTGCTGCTGT
*
7473294 TGCTGTTGCTGT
1 TGCTGCTGCTGT
7473306 TGCTGC
1 TGCTGC
7473312 AATTTCTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.33, T:0.43
Consensus pattern (12 bp):
TGCTGCTGCTGT
Found at i:7478359 original size:5 final size:5
Alignment explanation
Indices: 7478331--7478383 Score: 52
Period size: 5 Copynumber: 9.8 Consensus size: 5
7478321 GAGAGACAAC
* *
7478331 CAAAGG CAAAG CCAAAG CCAAAG CAAAG CAAAG CAAAA CAAAAG CAGAG
1 CAAA-G CAAAG -CAAAG -CAAAG CAAAG CAAAG CAAAG C-AAAG CAAAG
7478380 CAAA
1 CAAA
7478384 AAACAGCTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
5 22 0.54
6 19 0.46
ACGTcount: A:0.58, C:0.23, G:0.19, T:0.00
Consensus pattern (5 bp):
CAAAG
Found at i:7481118 original size:16 final size:15
Alignment explanation
Indices: 7481083--7481127 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
7481073 ATTAAGTGAT
*
7481083 TTATTTTATATATTTT
1 TTATTTTATAT-TTTA
7481099 TTATTTTATATTTTGA
1 TTATTTTATATTTT-A
*
7481115 TTATATTATATTT
1 TTATTTTATATTT
7481128 CAGTTAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 3 0.12
16 23 0.88
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTATTTTATATTTTA
Found at i:7481266 original size:13 final size:13
Alignment explanation
Indices: 7481248--7481272 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7481238 AACAAAAATA
7481248 AATTAATTCAATC
1 AATTAATTCAATC
7481261 AATTAATTCAAT
1 AATTAATTCAAT
7481273 TAAAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTAATTCAATC
Found at i:7487863 original size:21 final size:20
Alignment explanation
Indices: 7487839--7487893 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
7487829 TAATATGTTT
7487839 ATTTATAATAAATATATATAA
1 ATTTATAATAAATATAT-TAA
* *
7487860 ATTTATTGATAAATTTATTAA
1 ATTTA-TAATAAATATATTAA
*
7487881 TTTTATAAATAAA
1 ATTTAT-AATAAA
7487894 AAATATCTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 17 0.61
22 10 0.36
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTTATAATAAATATATTAA
Found at i:7488008 original size:15 final size:15
Alignment explanation
Indices: 7487988--7488017 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7487978 TATCTAGTAA
7487988 TTTTTTTTT-AATTT
1 TTTTTTTTTCAATTT
7488002 TTTTTTTTTCAATTT
1 TTTTTTTTTCAATTT
7488017 T
1 T
7488018 GGGAGGTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTTTCAATTT
Found at i:7489778 original size:1 final size:1
Alignment explanation
Indices: 7489772--7489798 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
7489762 GACGAATGAG
7489772 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
7489799 CATATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7490661 original size:20 final size:20
Alignment explanation
Indices: 7490636--7490674 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7490626 GAATTTAAAT
*
7490636 ATTTTATAT-TTTATATTTAA
1 ATTTTAAATATTTAT-TTTAA
7490656 ATTTTAAATATTTATTTTA
1 ATTTTAAATATTTATTTTA
7490675 TTTTTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTAAATATTTATTTTAA
Found at i:7495932 original size:11 final size:11
Alignment explanation
Indices: 7495913--7495956 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7495903 ACGTGATAAT
7495913 ATAATATAAAA
1 ATAATATAAAA
*
7495924 ATGATATAAATAA
1 ATAATAT-AA-AA
*
7495937 AAAATATAAAA
1 ATAATATAAAA
7495948 ATAATATAA
1 ATAATATAA
7495957 TTTGAAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 16 0.59
12 4 0.15
13 7 0.26
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:7495945 original size:13 final size:13
Alignment explanation
Indices: 7495910--7495986 Score: 52
Period size: 13 Copynumber: 5.9 Consensus size: 13
7495900 CACACGTGAT
7495910 AATATAATATAAAA
1 AATATAA-ATAAAA
7495924 ATGATATAAATAAAA
1 A--ATATAAATAAAA
*
7495939 AATAT-AA-AAAT
1 AATATAAATAAAA
***
7495950 AATAT-AATTTGA
1 AATATAAATAAAA
* *
7495962 AATTTTAATAAAA
1 AATATAAATAAAA
7495975 AATATAAATAAA
1 AATATAAATAAA
7495987 TTCAACAAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
11 10 0.21
12 6 0.12
13 18 0.38
14 1 0.02
15 7 0.15
16 6 0.12
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
AATATAAATAAAA
Found at i:7497198 original size:19 final size:19
Alignment explanation
Indices: 7497169--7497221 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
7497159 TTATTAATTA
7497169 AAATAATAAAAAATATATTT
1 AAAT-ATAAAAAATATATTT
7497189 AAATATAAAAAATA-A-TT
1 AAATATAAAAAATATATTT
*
7497206 AAAT-TAATAAAT-TATT
1 AAATATAAAAAATATATT
7497222 CGAGTCAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
16 8 0.27
17 7 0.23
18 1 0.03
19 10 0.33
20 4 0.13
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATAAAAAATATATTT
Found at i:7497278 original size:32 final size:30
Alignment explanation
Indices: 7497242--7497302 Score: 70
Period size: 32 Copynumber: 2.0 Consensus size: 30
7497232 ATAATAATAC
*
7497242 TCAAACTTA-ACTCGATCGATAAATTAAATTAT
1 TCAAA-TTAGACTCGAT-AATAAA-TAAATTAT
*
7497274 TCAAATTAGATTCGATAATAAATAAATTA
1 TCAAATTAGACTCGATAATAAATAAATTA
7497303 AATTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 7 0.27
31 8 0.31
32 11 0.42
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (30 bp):
TCAAATTAGACTCGATAATAAATAAATTAT
Found at i:7497326 original size:22 final size:22
Alignment explanation
Indices: 7497298--7497355 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
7497288 ATAATAAATA
7497298 AATTAAATTTAAATTTTATTCG
1 AATTAAATTTAAATTTTATTCG
**
7497320 AATTAAATTTAAATTTTATTTT
1 AATTAAATTTAAATTTTATTCG
*
7497342 AATCAAATTTAAAT
1 AATTAAATTTAAAT
7497356 AATTTGTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTAAATTTAAATTTTATTCG
Found at i:7497621 original size:19 final size:19
Alignment explanation
Indices: 7497596--7497646 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
7497586 TATAGAGATA
7497596 AAATAATTTAATAATAAATT
1 AAATAATTTAATAA-AAATT
*
7497616 -AATAATTTAATAAATATT
1 AAATAATTTAATAAAAATT
*
7497634 AAATAATTAAATA
1 AAATAATTTAATA
7497647 TTTTTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATAATTTAATAAAAATT
Found at i:7502819 original size:13 final size:13
Alignment explanation
Indices: 7502801--7502829 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7502791 TGCATATCTT
7502801 GATCTTAGGTAGA
1 GATCTTAGGTAGA
7502814 GATCTTAGGTAGA
1 GATCTTAGGTAGA
7502827 GAT
1 GAT
7502830 GCTATTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.31
Consensus pattern (13 bp):
GATCTTAGGTAGA
Found at i:7509123 original size:13 final size:13
Alignment explanation
Indices: 7509094--7509122 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7509084 ATTTTGTAGC
7509094 TTTTCGTTTTTTT
1 TTTTCGTTTTTTT
7509107 TTTTC-TTTTTTT
1 TTTTCGTTTTTTT
7509119 TTTT
1 TTTT
7509123 TTAACTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (13 bp):
TTTTCGTTTTTTT
Found at i:7514049 original size:15 final size:15
Alignment explanation
Indices: 7514017--7514045 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7514007 AAATTTTTAA
7514017 AAAAATTATAAATAT
1 AAAAATTATAAATAT
7514032 AAAAATT-TAAATAT
1 AAAAATTATAAATAT
7514046 TAAATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAAATTATAAATAT
Found at i:7527396 original size:25 final size:25
Alignment explanation
Indices: 7527348--7527396 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7527338 TTTTTTTTTT
*
7527348 TTAATTTGATGCATTTTATATATTG
1 TTAATTTGATGCATTTAATATATTG
*
7527373 TTAA-TTGATGTCATTTAATTTATT
1 TTAATTTGATG-CATTTAATATATT
7527397 TTATTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.57
Consensus pattern (25 bp):
TTAATTTGATGCATTTAATATATTG
Found at i:7534958 original size:3 final size:3
Alignment explanation
Indices: 7534950--7534981 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7534940 ATGAAATGAT
7534950 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7534982 TTAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7537451 original size:19 final size:18
Alignment explanation
Indices: 7537419--7537454 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7537409 AAATAAAAAA
*
7537419 TAATATAATTTAAAATTT
1 TAATATAATATAAAATTT
7537437 TAATAATAATATAAAATT
1 TAAT-ATAATATAAAATT
7537455 AATAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TAATATAATATAAAATTT
Found at i:7537463 original size:19 final size:19
Alignment explanation
Indices: 7537417--7537464 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7537407 AAAAATAAAA
* *
7537417 AATAATATAATTTAAAATT
1 AATAAAATAATATAAAATT
*
7537436 -TTAATAATAATATAAAATT
1 AATAA-AATAATATAAAATT
7537455 AATAAAATAA
1 AATAAAATAA
7537465 AAAATAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
18 3 0.13
19 17 0.74
20 3 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AATAAAATAATATAAAATT
Found at i:7539156 original size:11 final size:11
Alignment explanation
Indices: 7539142--7539190 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
7539132 ATCATTTTTA
*
7539142 TATATTTTATC
1 TATATTATATC
*
7539153 TATATTATATT
1 TATATTATATC
7539164 TATATTATATC
1 TATATTATATC
7539175 ATCATATTATAT-
1 -T-ATATTATATC
7539187 TATA
1 TATA
7539191 AATTATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 3 0.09
11 20 0.61
12 1 0.03
13 9 0.27
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (11 bp):
TATATTATATC
Found at i:7539163 original size:16 final size:16
Alignment explanation
Indices: 7539142--7539190 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
7539132 ATCATTTTTA
7539142 TATATTT-TATCTATAT
1 TATATTTATAT-TATAT
7539158 TATATTTATATTATAT
1 TATATTTATATTATAT
*
7539174 CATCATATTATATTATA
1 TAT-AT-TTATATTATA
7539191 AATTATCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
17 5 0.17
18 10 0.34
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATTTATATTATAT
Found at i:7540199 original size:24 final size:25
Alignment explanation
Indices: 7540172--7540219 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7540162 GATCTGTTAA
7540172 AATA-ATATTATTTTAT-ATTTAATG
1 AATATATATT-TTTTATAATTTAATG
7540196 AATATATATTTTTTATAATTTAAT
1 AATATATATTTTTTATAATTTAAT
7540220 ATTTAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
AATATATATTTTTTATAATTTAATG
Found at i:7541287 original size:27 final size:27
Alignment explanation
Indices: 7541232--7541288 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7541222 TAATAAAAAG
**
7541232 TATTATAATTATAATTGATAAAATTTT
1 TATTATAATTATAATTGATAAAAAATT
*
7541259 TATTATAATTATAATCTTA-AAAAAATT
1 TATTATAATTATAAT-TGATAAAAAATT
7541286 TAT
1 TAT
7541289 ATTAAACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
TATTATAATTATAATTGATAAAAAATT
Found at i:7545011 original size:4 final size:4
Alignment explanation
Indices: 7545002--7545027 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7544992 AGCTGATCAT
7545002 TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TA
7545028 TATATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:7564448 original size:22 final size:23
Alignment explanation
Indices: 7564423--7564476 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
7564413 CCCGAAATTA
7564423 ATAAAATATTA-TTTTTTAAAAT
1 ATAAAATATTATTTTTTTAAAAT
*
7564445 ATAAAATATTATTTTTTTTAAAT
1 ATAAAATATTATTTTTTTAAAAT
7564468 AT-AAATATT
1 ATAAAATATT
7564477 TAAAAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATAAAATATTATTTTTTTAAAAT
Found at i:7566708 original size:14 final size:15
Alignment explanation
Indices: 7566690--7566730 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
7566680 ATACATAAAC
7566690 TATTAAGCATAAATG
1 TATTAAGCATAAATG
7566705 ATTATTAAGCATAAATG
1 --TATTAAGCATAAATG
7566722 -ATT-AGCATA
1 TATTAAGCATA
7566731 TTGAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.25
14 3 0.12
17 15 0.62
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (15 bp):
TATTAAGCATAAATG
Found at i:7566712 original size:17 final size:17
Alignment explanation
Indices: 7566690--7566725 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7566680 ATACATAAAC
7566690 TATTAAGCATAAATGAT
1 TATTAAGCATAAATGAT
7566707 TATTAAGCATAAATGAT
1 TATTAAGCATAAATGAT
7566724 TA
1 TA
7566726 GCATATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (17 bp):
TATTAAGCATAAATGAT
Found at i:7572999 original size:22 final size:22
Alignment explanation
Indices: 7572969--7573010 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7572959 TAAAATAACA
*
7572969 ATATTTGTATAATTTTAAATAT
1 ATATATGTATAATTTTAAATAT
7572991 ATATATGTATAATTTTAAAT
1 ATATATGTATAATTTTAAAT
7573011 TGAGATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
ATATATGTATAATTTTAAATAT
Found at i:7580870 original size:2 final size:2
Alignment explanation
Indices: 7580863--7580893 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7580853 GGTACAGTTC
7580863 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7580894 CTGCATGGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7595770 original size:18 final size:18
Alignment explanation
Indices: 7595747--7595812 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 18
7595737 TAAGTAAAGT
7595747 ATCATAATAATGAATAGA
1 ATCATAATAATGAATAGA
* *
7595765 ATCATAATTTAAACATGTA-AGT
1 ATCATAA--T--A-ATGAATAGA
7595787 ATCATAATAATGAATAGA
1 ATCATAATAATGAATAGA
7595805 ATCATAAT
1 ATCATAAT
7595813 TTAAACATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
17 4 0.11
18 18 0.47
20 2 0.05
22 10 0.26
23 4 0.11
ACGTcount: A:0.52, C:0.08, G:0.09, T:0.32
Consensus pattern (18 bp):
ATCATAATAATGAATAGA
Found at i:7595798 original size:40 final size:40
Alignment explanation
Indices: 7595743--7595821 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
7595733 GTATTAAGTA
7595743 AAGTATCATAATAATGAATAGAATCATAATTTAAACATGT
1 AAGTATCATAATAATGAATAGAATCATAATTTAAACATGT
7595783 AAGTATCATAATAATGAATAGAATCATAATTTAAACATG
1 AAGTATCATAATAATGAATAGAATCATAATTTAAACATG
7595822 ACGTTAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.32
Consensus pattern (40 bp):
AAGTATCATAATAATGAATAGAATCATAATTTAAACATGT
Found at i:7613453 original size:41 final size:41
Alignment explanation
Indices: 7613390--7613468 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
7613380 AAACACTTCC
* * *
7613390 AGCATTATAACTATAGTTTCTTGTTGAAGCTGACAGCTTGA
1 AGCATTATAACAATAATATCTTGTTGAAGCTGACAGCTTGA
*
7613431 AGCATTATATCAATAATATCTTGTTGAAGCTGACAGCT
1 AGCATTATAACAATAATATCTTGTTGAAGCTGACAGCT
7613469 CGAGCTCGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (41 bp):
AGCATTATAACAATAATATCTTGTTGAAGCTGACAGCTTGA
Found at i:7617050 original size:23 final size:24
Alignment explanation
Indices: 7617023--7617077 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
7617013 ATATAATTTA
*
7617023 AAATTTTAATAAAA-ATTATAAAT
1 AAATTTTAATAAAATATTAAAAAT
* *
7617046 AAATTTAAATAAAATTTTAAAAAT
1 AAATTTTAATAAAATATTAAAAAT
*
7617070 ATATTTTA
1 AAATTTTA
7617078 TATTTTCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATTTTAATAAAATATTAAAAAT
Found at i:7617066 original size:12 final size:12
Alignment explanation
Indices: 7617021--7617066 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
7617011 TAATATAATT
7617021 TAAAATTTT-AA
1 TAAAATTTTAAA
*
7617032 TAAAAATTATAAA
1 T-AAAATTTTAAA
7617045 T-AAA-TTTAAA
1 TAAAATTTTAAA
7617055 TAAAATTTTAAA
1 TAAAATTTTAAA
7617067 AATATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
10 6 0.21
11 7 0.24
12 13 0.45
13 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TAAAATTTTAAA
Found at i:7617168 original size:8 final size:8
Alignment explanation
Indices: 7617127--7617185 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
7617117 ATAAAATATG
7617127 ATATAAAT
1 ATATAAAT
*
7617135 ATATGAATT
1 ATAT-AAAT
*
7617144 ATTATTAAT
1 A-TATAAAT
*
7617153 TTAT-AAT
1 ATATAAAT
7617160 ATATAAAT
1 ATATAAAT
7617168 ATATAAAT
1 ATATAAAT
7617176 -TATCAAAT
1 ATAT-AAAT
7617184 AT
1 AT
7617186 TTTAATCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
7 9 0.22
8 22 0.54
9 7 0.17
10 3 0.07
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (8 bp):
ATATAAAT
Found at i:7617294 original size:21 final size:20
Alignment explanation
Indices: 7617260--7617302 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
7617250 TAAAAATATT
7617260 ATAATTTAAAATTTAA-AAA
1 ATAATTTAAAATTTAATAAA
7617279 ATAATTATATAAATTTAATAAA
1 ATAATT-TA-AAATTTAATAAA
7617301 AT
1 AT
7617303 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 2 0.10
21 8 0.38
22 5 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATTTAAAATTTAATAAA
Found at i:7621236 original size:18 final size:18
Alignment explanation
Indices: 7621210--7621247 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7621200 GCTTTCTAAA
*
7621210 CTCTCTTTCTCTCTTTTT
1 CTCTCTTTCTCTCTCTTT
*
7621228 CTCTTTTTCTCTCTCTTT
1 CTCTCTTTCTCTCTCTTT
7621246 CT
1 CT
7621248 TGCGTTGCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
CTCTCTTTCTCTCTCTTT
Found at i:7621246 original size:10 final size:10
Alignment explanation
Indices: 7621210--7621247 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
7621200 GCTTTCTAAA
7621210 CTCTCTTTCT
1 CTCTCTTTCT
7621220 CTCT-TTT-T
1 CTCTCTTTCT
*
7621228 CTCTTTTTCT
1 CTCTCTTTCT
7621238 CTCTCTTTCT
1 CTCTCTTTCT
7621248 TGCGTTGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
8 5 0.20
9 6 0.24
10 14 0.56
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (10 bp):
CTCTCTTTCT
Found at i:7631233 original size:48 final size:47
Alignment explanation
Indices: 7631164--7631254 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
7631154 TAATCAAACA
* *
7631164 AAATCATGGATCAATCATTAAAAATTATCATAAATCATCTTTATATAC
1 AAATCATGGATCAATCATT-AAAATCATCATAAATCATCATTATATAC
* *
7631212 AAATCATGGATCAAAT-TTTAAAATCATTATAAATCATCATTAT
1 AAATCATGGATC-AATCATTAAAATCATCATAAATCATCATTAT
7631255 TATTAGTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
47 21 0.55
48 14 0.37
49 3 0.08
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.36
Consensus pattern (47 bp):
AAATCATGGATCAATCATTAAAATCATCATAAATCATCATTATATAC
Found at i:7635583 original size:2 final size:2
Alignment explanation
Indices: 7635576--7635600 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7635566 ATTACTCTTC
7635576 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7635601 TAATTCCGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7640827 original size:11 final size:11
Alignment explanation
Indices: 7640813--7640842 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7640803 TTATTTAATG
7640813 TTTATGTTATA
1 TTTATGTTATA
7640824 TTTATGTTATA
1 TTTATGTTATA
*
7640835 TATATGTT
1 TTTATGTT
7640843 GAGATATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (11 bp):
TTTATGTTATA
Found at i:7644834 original size:32 final size:32
Alignment explanation
Indices: 7644793--7644855 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
7644783 GCTATAATTG
*
7644793 AGGCTAAGCTTGAGAGGCACTGAGACAACCTT
1 AGGCTAAGCTTGAGAGGCACTGAAACAACCTT
*
7644825 AGGCTAAGCTTGAGATGCACTGAAACAACCT
1 AGGCTAAGCTTGAGAGGCACTGAAACAACCT
7644856 AGGTAGTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (32 bp):
AGGCTAAGCTTGAGAGGCACTGAAACAACCTT
Found at i:7644927 original size:60 final size:62
Alignment explanation
Indices: 7644841--7644978 Score: 149
Period size: 64 Copynumber: 2.3 Consensus size: 62
7644831 AGCTTGAGAT
* * **
7644841 GCACTGAAACAACCTAGGTAGTAAGG-T-TATG-TACTATGACTGAGTCCAAGCTGGATGAG
1 GCACTGAAACAACCTAAGCAACAAGGTTGTATGATACTATGACTGAGTCCAAGCTGGATGAG
* * *
7644900 GCACTGAAAACAACCTAAGCAACAAGGTTGTATGCATACTATGATTGAGTCCAAGCTTGAAG-G
1 GCACTG-AAACAACCTAAGCAACAAGGTTGTATG-ATACTATGACTGAGTCCAAGCTGGATGAG
* *
7644963 GCATTGAGACAACCTA
1 GCACTGAAACAACCTA
7644979 GACCTATAGA
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
59 6 0.09
60 16 0.25
61 1 0.02
62 13 0.20
63 6 0.09
64 23 0.35
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (62 bp):
GCACTGAAACAACCTAAGCAACAAGGTTGTATGATACTATGACTGAGTCCAAGCTGGATGAG
Found at i:7653568 original size:12 final size:12
Alignment explanation
Indices: 7653534--7653575 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
7653524 TAATCATGCA
7653534 AAAATACTAAA-
1 AAAATACTAAAT
*
7653545 AAAACACATAAAT
1 AAAATAC-TAAAT
7653558 AAAATACTAAAT
1 AAAATACTAAAT
7653570 AAAATA
1 AAAATA
7653576 AAAATACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 6 0.22
12 15 0.56
13 6 0.22
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAATACTAAAT
Found at i:7654092 original size:19 final size:19
Alignment explanation
Indices: 7654070--7654115 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
7654060 ACTAGCATAA
7654070 AAAAATTCATCGAAAAT-TG
1 AAAAATTCATCG-AAATCTG
*
7654089 AAAAGTTTCATCGAAATCTG
1 AAAA-ATTCATCGAAATCTG
7654109 AAAAATT
1 AAAAATT
7654116 TTTCAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (19 bp):
AAAAATTCATCGAAATCTG
Found at i:7654382 original size:9 final size:9
Alignment explanation
Indices: 7654370--7654401 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7654360 TATTTTTATT
7654370 TTTTTTTAA
1 TTTTTTTAA
7654379 TTTTTTT-A
1 TTTTTTTAA
7654387 TTTTTTTAA
1 TTTTTTTAA
7654396 TTTTTT
1 TTTTTT
7654402 ATTAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:7654383 original size:17 final size:17
Alignment explanation
Indices: 7654361--7654401 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
7654351 TTAAATACTT
7654361 ATTTTTATT-TTTTTTTA
1 ATTTTT-TTATTTTTTTA
7654378 ATTTTTTTATTTTTTTA
1 ATTTTTTTATTTTTTTA
7654395 ATTTTTT
1 ATTTTTT
7654402 ATTAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.09
17 21 0.91
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (17 bp):
ATTTTTTTATTTTTTTA
Found at i:7654978 original size:25 final size:25
Alignment explanation
Indices: 7654950--7654997 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7654940 ATATTAAAAT
7654950 ATTT-TTTATATTCAAATTTAATTCG
1 ATTTATTTATATTCAAA-TTAATTCG
* *
7654975 ATTTATTTATGTTTAAATTAATT
1 ATTTATTTATATTCAAATTAATT
7654998 TAAAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (25 bp):
ATTTATTTATATTCAAATTAATTCG
Found at i:7655062 original size:32 final size:31
Alignment explanation
Indices: 7655022--7655087 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 31
7655012 TATTCTTTTT
*
7655022 AAATATAAATATAAAATTAAACGAAATATTAA
1 AAATATAAATATAAAATTAAA-GAAATAATAA
*
7655054 AAATATAAATATAAAATTAAATAAATAATAA
1 AAATATAAATATAAAATTAAAGAAATAATAA
7655085 AAA
1 AAA
7655088 ATTATATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 11 0.34
32 21 0.66
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (31 bp):
AAATATAAATATAAAATTAAAGAAATAATAA
Found at i:7655097 original size:31 final size:32
Alignment explanation
Indices: 7655022--7655099 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
7655012 TATTCTTTTT
*
7655022 AAATATAAATATAAAATTAAACGAAATATTAA
1 AAATATAAATATAAAATTAAACGAAATATAAA
*
7655054 AAATATAAATATAAAATTAAA-TAAATAATAAA
1 AAATATAAATATAAAATTAAACGAAAT-ATAAA
*
7655086 AAATTATATATATA
1 AAA-TATAAATATA
7655100 TATATCTCGA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
31 4 0.10
32 28 0.68
33 9 0.22
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (32 bp):
AAATATAAATATAAAATTAAACGAAATATAAA
Found at i:7659612 original size:18 final size:18
Alignment explanation
Indices: 7659591--7659628 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7659581 CTCTCGCAGA
*
7659591 TTTTAA-AATTATTTAATT
1 TTTTAATAA-TATTAAATT
7659609 TTTTAATAATATTAAATT
1 TTTTAATAATATTAAATT
7659627 TT
1 TT
7659629 ATATATTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAATAATATTAAATT
Found at i:7664407 original size:13 final size:13
Alignment explanation
Indices: 7664389--7664418 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7664379 ACTGAAATAA
7664389 GATTGATTACCAG
1 GATTGATTACCAG
*
7664402 GATTGATTAGCAG
1 GATTGATTACCAG
7664415 GATT
1 GATT
7664419 TTATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (13 bp):
GATTGATTACCAG
Found at i:7664542 original size:5 final size:5
Alignment explanation
Indices: 7664532--7664573 Score: 68
Period size: 5 Copynumber: 8.4 Consensus size: 5
7664522 TATAGGAGAA
7664532 GGGGT GGGGT -GGGT GGGGT GGGGT GGGGT GGGGGT GGGGT GG
1 GGGGT GGGGT GGGGT GGGGT GGGGT GGGGT -GGGGT GGGGT GG
7664574 AAGGAAGTGC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.11
5 26 0.74
6 5 0.14
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GGGGT
Found at i:7670260 original size:2 final size:2
Alignment explanation
Indices: 7670253--7670282 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7670243 AGAGTGAGCA
7670253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7670283 TCTTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7671620 original size:40 final size:40
Alignment explanation
Indices: 7671550--7671663 Score: 129
Period size: 40 Copynumber: 2.9 Consensus size: 40
7671540 TTAAAAACGT
* * * *
7671550 AACATCATATTTTCAACAAAAATTACGTTTTTATCTTATA
1 AACATCATATTTTCAATAAAAACTATGTTTTTATCTTAAA
* * * *
7671590 AATATTATATTTTTAATAAACACTATGTTTTTATCTTAAA
1 AACATCATATTTTCAATAAAAACTATGTTTTTATCTTAAA
* * *
7671630 AACGTCATCTTTTCAATAAAAATTATGTTTTTAT
1 AACATCATATTTTCAATAAAAACTATGTTTTTAT
7671664 ATTAGACATC
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (40 bp):
AACATCATATTTTCAATAAAAACTATGTTTTTATCTTAAA
Found at i:7673762 original size:21 final size:22
Alignment explanation
Indices: 7673737--7673777 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7673727 TTATAAAACA
7673737 AAATG-AAAAAAAAATATAATT
1 AAATGTAAAAAAAAATATAATT
*
7673758 AAATGTAAAAGAAAATATAA
1 AAATGTAAAAAAAAATATAA
7673778 CATCTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (22 bp):
AAATGTAAAAAAAAATATAATT
Found at i:7674187 original size:21 final size:20
Alignment explanation
Indices: 7674162--7674208 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
7674152 ACAAATTTAA
*
7674162 ATAAATAAACCCTAAACAAAT
1 ATAAACAAACCC-AAACAAAT
* *
7674183 ATAAACGAACTCAAACAAAT
1 ATAAACAAACCCAAACAAAT
7674203 ATAAAC
1 ATAAAC
7674209 GAATCTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.62, C:0.19, G:0.02, T:0.17
Consensus pattern (20 bp):
ATAAACAAACCCAAACAAAT
Found at i:7674356 original size:6 final size:6
Alignment explanation
Indices: 7674345--7674455 Score: 66
Period size: 7 Copynumber: 17.3 Consensus size: 6
7674335 GTAAGCCTAT
* *
7674345 TTTTTA TTTTTA TTTTTGTA TTTTATA TTCTTA -TTCTA -TTTTA TTTTTA
1 TTTTTA TTTTTA -TTTT-TA TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA
* * *
7674394 TTATTA TTTATATA TTTTTT TCTTTTA TTTTTA -TCTTA TGTATTTA TTATTTA
1 TTTTTA TTT-T-TA TTTTTA T-TTTTA TTTTTA TTTTTA T-T-TTTA TT-TTTA
7674447 TTTATTA TT
1 TTT-TTA TT
7674456 ACTATTTATT
Statistics
Matches: 84, Mismatches: 11, Indels: 19
0.74 0.10 0.17
Matches are distributed among these distances:
5 11 0.13
6 28 0.33
7 34 0.40
8 11 0.13
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTTA
Found at i:7674386 original size:18 final size:18
Alignment explanation
Indices: 7674363--7674411 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
7674353 TTTATTTTTG
7674363 TATTTTATATTCTTATT-C
1 TATTTTATATT-TTATTAC
*
7674381 TATTTTAT-TTTTATTAT
1 TATTTTATATTTTATTAC
7674398 TATTTATATATTTT
1 TATTT-TATATTTT
7674412 TTTCTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 5 0.19
17 7 0.26
18 11 0.41
19 4 0.15
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTATATTTTATTAC
Found at i:7674399 original size:3 final size:3
Alignment explanation
Indices: 7674381--7674509 Score: 72
Period size: 3 Copynumber: 42.3 Consensus size: 3
7674371 ATTCTTATTC
* * * *
7674381 TAT T-T TAT TTT TAT TAT TATT TAT ATAT T-T TTT TCT T-T TAT TTT
1 TAT TAT TAT TAT TAT TAT TA-T TAT -TAT TAT TAT TAT TAT TAT TAT
* * *
7674425 TA- TCT TAT GTATT TAT TATT TATT TAT TAT TAC TATT TAT TAA TA-
1 TAT TAT TAT -TA-T TAT TA-T TA-T TAT TAT TAT TA-T TAT TAT TAT
*
7674470 TAT ATAT CAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7674510 TTGTTAATAT
Statistics
Matches: 101, Mismatches: 12, Indels: 26
0.73 0.09 0.19
Matches are distributed among these distances:
2 11 0.11
3 67 0.66
4 22 0.22
5 1 0.01
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7674413 original size:27 final size:28
Alignment explanation
Indices: 7674383--7674456 Score: 80
Period size: 27 Copynumber: 2.6 Consensus size: 28
7674373 TCTTATTCTA
7674383 TTTTATTTTTATTATTAT-TTATATATT
1 TTTTATTTTTATTATTATCTTATATATT
* *
7674410 TTTT-TCTTTTATTTTTATCTTATGTATT
1 TTTTAT-TTTTATTATTATCTTATATATT
*
7674438 TATTATTTATTTATTATTA
1 TTTTA-TT-TTTATTATTA
7674457 CTATTTATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.03
27 15 0.39
28 11 0.29
29 1 0.03
30 10 0.26
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (28 bp):
TTTTATTTTTATTATTATCTTATATATT
Found at i:7674422 original size:43 final size:43
Alignment explanation
Indices: 7674345--7674508 Score: 102
Period size: 43 Copynumber: 3.6 Consensus size: 43
7674335 GTAAGCCTAT
* * *
7674345 TTTTTATTTTTATTTTTGTATTTTATATTCTTA-TTCTATTTTA
1 TTTTTATTATTATTTAT-TATTTTATATTCTTATTTCTATCTTA
*
7674388 TTTTTATTATTATTTATATATTTT-T-TTCTTTTATTTTTATCTTA
1 TTTTTATTATTATTTAT-TATTTTATATTC--TTATTTCTATCTTA
* * *
7674432 TGTATTTATTATTTATTTATTATTACTAT-TTATTAATATATATATCATTA
1 T-T-TTTATTA-TTATTTATTATT-TTATATTCTT-AT-T-TCTATC-TTA
*
7674482 TTATTATTATTATTATTATTATTTTAT
1 TTTTTATTATTA-T-TTATTATTTTAT
7674509 TTTGTTAATA
Statistics
Matches: 97, Mismatches: 10, Indels: 23
0.75 0.08 0.18
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 24 0.25
44 9 0.09
45 1 0.01
46 13 0.13
47 14 0.14
48 14 0.14
49 14 0.14
50 4 0.04
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.70
Consensus pattern (43 bp):
TTTTTATTATTATTTATTATTTTATATTCTTATTTCTATCTTA
Found at i:7674449 original size:64 final size:64
Alignment explanation
Indices: 7674342--7674472 Score: 144
Period size: 64 Copynumber: 2.0 Consensus size: 64
7674332 TGGGTAAGCC
* * * * *
7674342 TATTTTTTATTTTTATTTTTGTATTTTATATTCTTATTCTATTTTATTTTTATTA-TTATTTATA
1 TATTTTTTATTTTTATTTTTATATTTTATATTATTATTCTA-TTTATTATTACTATTTATTAATA
*
7674406 TATTTTTT-TCTTTTATTTTTATCTTATGTAT-TTATTATT-TATTTATTATTACTATTTATTAA
1 TATTTTTTAT-TTTTATTTTTATATT-T-TATATTATTATTCTATTTATTATTACTATTTATTAA
7674468 TA
63 TA
7674470 TAT
1 TAT
7674473 ATATCATTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
63 12 0.21
64 34 0.60
65 8 0.14
66 3 0.05
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (64 bp):
TATTTTTTATTTTTATTTTTATATTTTATATTATTATTCTATTTATTATTACTATTTATTAATA
Found at i:7674466 original size:70 final size:70
Alignment explanation
Indices: 7674346--7674476 Score: 162
Period size: 70 Copynumber: 1.9 Consensus size: 70
7674336 TAAGCCTATT
* * * *
7674346 TTTTATTTTTATTTTTGTATTTTATATTCTTATTCTATTTTATTTTTATTATTATTTATATATTT
1 TTTTATTTTTATTTATGTATTTTATATTCTTATTCTATTTTATATTTATTAATATATATATATTT
7674411 TTTTC
66 TTTTC
7674416 TTTTATTTTTATCTTATGTA-TTTAT-TAT-TTATT-TATTATTACTATTTATTAATATATATAT
1 TTTTATTTTTAT-TTATGTATTTTATAT-TCTTATTCTATT-TTA-TATTTATTAATATATATAT
7674477 CATTATTATT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
68 4 0.08
69 9 0.17
70 34 0.64
71 6 0.11
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.70
Consensus pattern (70 bp):
TTTTATTTTTATTTATGTATTTTATATTCTTATTCTATTTTATATTTATTAATATATATATATTT
TTTTC
Found at i:7674545 original size:71 final size:72
Alignment explanation
Indices: 7674445--7674582 Score: 160
Period size: 71 Copynumber: 1.9 Consensus size: 72
7674435 ATTTATTATT
* *
7674445 TATTTATTATTACTATTTATTAATATATATATCATTA-TTAT-TATTATTATTATTATTATTTTA
1 TATTTATTATTACTATTTATTAATATATATATCATAATTTATCTATTA-T-TTATTATTAATTTA
7674508 TTTTGTTAA
64 TTTTGTTAA
* * *
7674517 TATTTA-TATGTA-TATTTATCTGAT-TATATATTATAATTTATCTATTATTTATTTTTAATTTA
1 TATTTATTAT-TACTATTTAT-TAATATATATATCATAATTTATCTATTATTTATTATTAATTTA
7674579 TTTT
64 TTTT
7674583 TTATTTTTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
71 36 0.63
72 16 0.28
73 5 0.09
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (72 bp):
TATTTATTATTACTATTTATTAATATATATATCATAATTTATCTATTATTTATTATTAATTTATT
TTGTTAA
Found at i:7674555 original size:22 final size:21
Alignment explanation
Indices: 7674517--7674579 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
7674507 ATTTTGTTAA
7674517 TATT-TATATGTAT-ATTTATC
1 TATTATATAT-TATAATTTATC
7674537 TGATTATATATTATAATTTATC
1 T-ATTATATATTATAATTTATC
* *
7674559 TATTATTTATTTTTAATTTAT
1 TATTATATA-TTATAATTTAT
7674580 TTTTTATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
20 1 0.03
21 13 0.35
22 23 0.62
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (21 bp):
TATTATATATTATAATTTATC
Found at i:7674586 original size:22 final size:21
Alignment explanation
Indices: 7674530--7674618 Score: 70
Period size: 22 Copynumber: 4.1 Consensus size: 21
7674520 TTATATGTAT
* * *
7674530 ATTTATCTGATTATATATTATA
1 ATTTATCT-ATTATTTTTTTTA
7674552 ATTTATCTATTATTTATTTTTA
1 ATTTATCTATTATTT-TTTTTA
* * **
7674574 ATTTATTTTTTATTTTTTTGG
1 ATTTATCTATTATTTTTTTTA
* *
7674595 GTTTATCTGATTATTTTTATTA
1 ATTTATCT-ATTATTTTTTTTA
7674617 AT
1 AT
7674619 ATTCTTATTT
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
21 16 0.31
22 35 0.69
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (21 bp):
ATTTATCTATTATTTTTTTTA
Found at i:7675179 original size:19 final size:19
Alignment explanation
Indices: 7675157--7675195 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7675147 ATTTTAAAGA
*
7675157 GAAGGGAGAGAAAAAGAAG
1 GAAGAGAGAGAAAAAGAAG
*
7675176 GAAGAGAGAGAGAAAGAAG
1 GAAGAGAGAGAAAAAGAAG
7675195 G
1 G
7675196 CTCGGTCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (19 bp):
GAAGAGAGAGAAAAAGAAG
Found at i:7675189 original size:15 final size:15
Alignment explanation
Indices: 7675152--7675194 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
7675142 CGAGAATTTT
*
7675152 AAAGAGAAGGGAGAG
1 AAAGAGAAGGAAGAG
*
7675167 AAAAAGAAGGAAGAG
1 AAAGAGAAGGAAGAG
* *
7675182 AGAGAGAAAGAAG
1 AAAGAGAAGGAAG
7675195 GCTCGGTCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (15 bp):
AAAGAGAAGGAAGAG
Found at i:7675501 original size:11 final size:11
Alignment explanation
Indices: 7675487--7675521 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
7675477 CATTTTTTTA
7675487 TATATTTTATT
1 TATATTTTATT
7675498 TATATTTTATT
1 TATATTTTATT
7675509 TATTATTATTATT
1 TA-TATT-TTATT
7675522 AGATTAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.59
12 4 0.18
13 5 0.23
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TATATTTTATT
Found at i:7675573 original size:28 final size:27
Alignment explanation
Indices: 7675550--7675625 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 27
7675540 ACTATTTTAT
7675550 TTTTATCTTTATTTTATTTTTATTTTCG
1 TTTTA-CTTTATTTTATTTTTATTTTCG
7675578 TTTTACTTT-TCTTTATTTTTTATTTTCG
1 TTTTACTTTAT-TTTA-TTTTTATTTTCG
*
7675606 TTTTACTTTTATTTTGTTTT
1 TTTTAC-TTTATTTTATTTT
7675626 ATTATTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
26 1 0.02
27 8 0.19
28 27 0.63
29 6 0.14
30 1 0.02
ACGTcount: A:0.12, C:0.08, G:0.04, T:0.76
Consensus pattern (27 bp):
TTTTACTTTATTTTATTTTTATTTTCG
Found at i:7675581 original size:17 final size:17
Alignment explanation
Indices: 7675544--7675628 Score: 62
Period size: 17 Copynumber: 5.4 Consensus size: 17
7675534 TTTAATACTA
*
7675544 TTTTATTTTTATCTTT-A
1 TTTTATTTTTAT-TTTCG
7675561 TTTTATTTTTATTTTCG
1 TTTTATTTTTATTTTCG
*
7675578 TTTTA-----CTTTTC-
1 TTTTATTTTTATTTTCG
7675589 -TTTATTTTTTATTTTCG
1 TTTTA-TTTTTATTTTCG
*
7675606 TTTTACTTTTATTTT-G
1 TTTTATTTTTATTTTCG
7675622 TTTTATT
1 TTTTATT
7675629 ATTTTTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 19
0.69 0.06 0.24
Matches are distributed among these distances:
10 4 0.07
12 5 0.09
16 15 0.28
17 26 0.48
18 4 0.07
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (17 bp):
TTTTATTTTTATTTTCG
Found at i:7675598 original size:11 final size:10
Alignment explanation
Indices: 7675544--7675636 Score: 53
Period size: 11 Copynumber: 8.4 Consensus size: 10
7675534 TTTAATACTA
7675544 TTTTATTTTT
1 TTTTATTTTT
7675554 ATCTTTATTTTAT
1 -T-TTTATTTT-T
*
7675567 TTTTATTTTCG
1 TTTTATTTT-T
*
7675578 TTTTACTTTT
1 TTTTATTTTT
*
7675588 CTTTATTTTT
1 TTTTATTTTT
7675598 TATTT-TCGTTTT
1 T-TTTAT--TTTT
*
7675610 ACTTTTATTTTG
1 --TTTTATTTTT
7675622 TTTTATTATTT
1 TTTTATT-TTT
7675633 TTTT
1 TTTT
7675637 TTCTTTAAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
10 16 0.25
11 26 0.41
12 16 0.25
13 4 0.06
14 2 0.03
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.77
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:7675637 original size:17 final size:17
Alignment explanation
Indices: 7675589--7675637 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
7675579 TTTACTTTTC
7675589 TTTATTTTTTATTTTCGT
1 TTTATTTTTT-TTTTCGT
* *
7675607 TTTACTTTTATTTT-GT
1 TTTATTTTTTTTTTCGT
7675623 TTTATTATTTTTTTT
1 TTTATT-TTTTTTTT
7675638 TCTTTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 8 0.31
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (17 bp):
TTTATTTTTTTTTTCGT
Found at i:7675637 original size:28 final size:27
Alignment explanation
Indices: 7675557--7675642 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 27
7675547 TATTTTTATC
*
7675557 TTTATTTTATTTTTATTTTCGTTTTACT
1 TTTATTTTTTTTTTATTTTC-TTTTACT
* *
7675585 TTTCTTTATTTTTTATTTTCGTTTTACT
1 TTTATTTTTTTTTTATTTTC-TTTTACT
*
7675613 TTTATTTTGTTTTATTATTTT-TTTTTCT
1 TTTATTTT-TTTT-TTATTTTCTTTTACT
7675641 TT
1 TT
7675643 AAATAAAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
28 39 0.78
29 4 0.08
30 7 0.14
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (27 bp):
TTTATTTTTTTTTTATTTTCTTTTACT
Found at i:7675643 original size:17 final size:17
Alignment explanation
Indices: 7675584--7675643 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
7675574 TTCGTTTTAC
*
7675584 TTTTCTTTATT-TTTTA
1 TTTTCTTTATTATTTTT
*
7675600 TTTTCGTT-TTACTTTTAT
1 TTTTCTTTATTA-TTTT-T
7675618 TTTGT-TTTATTATTTTT
1 TTT-TCTTTATTATTTTT
7675635 TTTTCTTTA
1 TTTTCTTTA
7675644 AATAAAATCC
Statistics
Matches: 35, Mismatches: 3, Indels: 11
0.71 0.06 0.22
Matches are distributed among these distances:
15 2 0.06
16 8 0.23
17 12 0.34
18 9 0.26
19 4 0.11
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTCTTTATTATTTTT
Found at i:7675775 original size:59 final size:59
Alignment explanation
Indices: 7675643--7676046 Score: 437
Period size: 59 Copynumber: 6.9 Consensus size: 59
7675633 TTTTTTCTTT
* * *
7675643 AAATAAAA-TCCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTGA
1 AAATAAAATTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
* ** *
7675701 AAACAAGCTTTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAA-AATTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
** * * *
7675761 AAATAAAATTTC-AAAAAAAGGTTTTGA-GAAAAAATTAAAAGTATCAATTTTCCTTGA
1 AAATAAAATTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
* * *
7675818 AAATAAAATTTTC-TAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAAA-TTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
* * ** * * *
7675877 AAATAAATTTTCCAAAAAGGT-TTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTCGA
1 AAATAAAATTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
* * * * *
7675934 AATTAAAGTTTCAAAAAAAATATTTTT-GAAGAAAACTTGAAAGTATCAATTTTCCTCGA
1 AAATAAAATTTCAAAAAAAATATTTTTAGGA-AAAAGTTGAAAGTATCAATTTTCCTTGA
* * *
7675993 AATTAAAGTTTCCAAAAAAAA-ATTTTTGAGGGAAAAGTTGAAAGTATCAATTTT
1 AAATAAAATTT-CAAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTT
7676047 TCCCTGTACA
Statistics
Matches: 290, Mismatches: 45, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
57 77 0.27
58 45 0.16
59 86 0.30
60 81 0.28
61 1 0.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (59 bp):
AAATAAAATTTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGA
Found at i:7675777 original size:116 final size:115
Alignment explanation
Indices: 7675656--7676048 Score: 474
Period size: 116 Copynumber: 3.4 Consensus size: 115
7675646 TAAAATCCAA
7675656 AAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAACAAGCTTTTCAAAAAA
1 AAAAAA-ATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-AAG-TTTTCAAAAAA
7675720 AATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C
63 AATATTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
* * * * * *
7675773 AAAAAAAGGTTTTGA-GAAAAAATTAAAAGTATCAATTTTCCTTGAAAATAAAATTTTC-TAAAA
1 AAAAAAA-TTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTG-AAA-AAAGTTTTCAAAAAA
*
7675836 AATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCC
63 AATATTTTT-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
** *
7675890 AAAAAGGTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAG-TTTCAAAAAAA
1 AAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAA--AAAGTTTTCAAAAAAA
* * ** * *
7675953 ATATTTTTGAAGAAAACTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
64 ATATTTTTGGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
*
7676006 AAAAAAAAATTTTTGAGGGAAAAGTTGAAAGTATCAATTTTTC
1 --AAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTC
7676049 CCTGTACAAA
Statistics
Matches: 239, Mismatches: 25, Indels: 22
0.84 0.09 0.08
Matches are distributed among these distances:
115 9 0.04
116 137 0.57
117 49 0.21
118 19 0.08
119 25 0.10
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (115 bp):
AAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAAAAGTTTTCAAAAAAAAT
ATTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
Found at i:7691890 original size:17 final size:16
Alignment explanation
Indices: 7691858--7691896 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
7691848 ACTATGCTTG
*
7691858 AAAAAAAAAATAAAAA
1 AAAAAAAAAAGAAAAA
7691874 AATAAAAAAAAGGAAAAA
1 AA-AAAAAAAA-GAAAAA
7691892 AAAAA
1 AAAAA
7691897 GTGAATGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 11 0.55
18 7 0.35
ACGTcount: A:0.90, C:0.00, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAAGAAAAA
Found at i:7691890 original size:18 final size:18
Alignment explanation
Indices: 7691859--7691893 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7691849 CTATGCTTGA
*
7691859 AAAAAAAAATAAAAAAAT
1 AAAAAAAAAGAAAAAAAT
*
7691877 AAAAAAAAGGAAAAAAA
1 AAAAAAAAAGAAAAAAA
7691894 AAAGTGAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.89, C:0.00, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAT
Found at i:7692998 original size:86 final size:86
Alignment explanation
Indices: 7692889--7693231 Score: 472
Period size: 86 Copynumber: 4.0 Consensus size: 86
7692879 TCAATGAGTA
* ** *
7692889 ATTTATTTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGCTATTTATTTTTTCAAAGTCGTTAA
1 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAA
*
7692954 GCCTTTGATTAGAGGAGCTTT
66 GCCTCTGATTAGAGGAGCTTT
* *
7692975 ATTTATCTTTCCAAAGTTGTTGAGCCTTTGATTAGAGGAGCCATTTATTTTTTCAAAGTCATTGA
1 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTT-A
7693040 A-CCTCTGATTAGAGGAGCTTT
65 AGCCTCTGATTAGAGGAGCTTT
* * * * *
7693061 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTTGATGAGCCATTTATTTTTTCAAAATTGTTGA
1 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAA
7693126 GCCTCTGATTAGAGGAGCTTT
66 GCCTCTGATTAGAGGAGCTTT
* * * * **
7693147 GTTTATCTTTTCAAATTTGTTGAGCCTCTGATTAGAGAAGCTTTGTTTATATTTTTCAAAGTCGT
1 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGC--CATTTAT-TTTTTCAAAGTCGT
*
7693212 TAAGCCTCTGCTTAGAGGAG
63 TAAGCCTCTGATTAGAGGAG
7693232 TTTTGATCAA
Statistics
Matches: 226, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
85 1 0.00
86 188 0.83
87 2 0.01
88 5 0.02
89 30 0.13
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (86 bp):
ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTAA
GCCTCTGATTAGAGGAGCTTT
Found at i:7693001 original size:44 final size:44
Alignment explanation
Indices: 7692889--7693231 Score: 392
Period size: 44 Copynumber: 7.9 Consensus size: 44
7692879 TCAATGAGTA
* *
7692889 ATTTATTTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGC--T
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* *
7692931 ATTTATTTTTTCAAAGTCGTTAAGCCTTTGATTAGAGGAGCTTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* * * * *
7692975 ATTTATCTTTCCAAAGTTGTTGAGCCTTTGATTAGAGGAGC--C
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* *
7693017 ATTTATTTTTTCAAAGTCATTGAACCTCTGATTAGAGGAGCTTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* * * * * *
7693061 ATTTATCTTTCCAAAGTTGTTGAGCCTCTGATTTGATGAGC--C
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* *
7693103 ATTTATTTTTTCAAAATTGTTGAGCCTCTGATTAGAGGAGCTTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* * * * *
7693147 GTTTATCTTTTCAAATTTGTTGAGCCTCTGATTAGAGAAGCTTT
1 ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
* * *
7693191 GTTTATATTTTTCAAAGTCGTTAAGCCTCTGCTTAGAGGAG
1 ATTTAT-TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG
7693232 TTTTGATCAA
Statistics
Matches: 254, Mismatches: 40, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
42 108 0.43
44 118 0.46
45 28 0.11
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.42
Consensus pattern (44 bp):
ATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
Found at i:7693429 original size:13 final size:13
Alignment explanation
Indices: 7693408--7693532 Score: 78
Period size: 13 Copynumber: 9.1 Consensus size: 13
7693398 GGTAAGCCCA
*
7693408 TTTTCTTTTTTAT
1 TTTTATTTTTTAT
7693421 TTTTATTTTTATAT
1 TTTTATTTTT-TAT
*
7693435 TTTATATTCTTATTCT
1 TTT-TATT-TT-TTAT
7693451 ATTTTA-TTTTTA-
1 -TTTTATTTTTTAT
7693463 TTTTATTTTTTTAT
1 TTTTA-TTTTTTAT
* *
7693477 TTTT-TTATATAT
1 TTTTATTTTTTAT
7693489 TTTT-TTCTTTTAT
1 TTTTATT-TTTTAT
*
7693502 TTTTATCTTATGTAT
1 TTTTAT-TT-TTTAT
7693517 TTATTATTTATTTAT
1 TT-TTATTT-TTTAT
7693532 T
1 T
7693533 ATTACTATTT
Statistics
Matches: 90, Mismatches: 9, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
11 5 0.06
12 12 0.13
13 25 0.28
14 14 0.16
15 20 0.22
16 10 0.11
17 4 0.04
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:7693464 original size:11 final size:11
Alignment explanation
Indices: 7693415--7693535 Score: 77
Period size: 11 Copynumber: 10.2 Consensus size: 11
7693405 CCATTTTCTT
7693415 TTTTATTTTTA
1 TTTTATTTTTA
7693426 TTTTTATATTTTA
1 -TTTTAT-TTTTA
* *
7693439 TATTCTTATTCTA
1 TTTTATT-TT-TA
7693452 TTTTATTTTTA
1 TTTTATTTTTA
7693463 TTTTATTTTT-
1 TTTTATTTTTA
7693473 TTATT-TTTTTA
1 TT-TTATTTTTA
*
7693484 TATATT-TTTTTC
1 T-T-TTATTTTTA
7693496 TTTTATTTTTA
1 TTTTATTTTTA
*
7693507 TCTTATGTATTTA
1 TTTTAT-T-TTTA
7693520 TTATTTATTTATTA
1 -T-TTTATTT-TTA
7693534 TT
1 TT
7693536 ACTATTTATT
Statistics
Matches: 89, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
10 9 0.10
11 27 0.30
12 26 0.29
13 18 0.20
14 5 0.06
15 4 0.04
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7693474 original size:44 final size:42
Alignment explanation
Indices: 7693414--7693542 Score: 111
Period size: 44 Copynumber: 3.0 Consensus size: 42
7693404 CCCATTTTCT
7693414 TTTTTATTTT-TATTTTTATATTTTATATTCTTATTCTATTTTA
1 TTTTTATTTTATATTTTTAT-TTTTATATT-TTATTCTATTTTA
* * *
7693457 TTTTTATTTTATTTTTTTATTTTTTTATATATTT-TTTTCTTTTA
1 TTTTTATTTTATATTTTTA--TTTTTATAT-TTTATTCTATTTTA
* * *
7693501 TTTTTATCTTATGTATTTATTATTTAT-TTATTATTACTATTT
1 TTTTTATTTTATATTTTTATT-TTTATATT-TTATT-CTATTT
7693543 ATTAATATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
41 1 0.01
42 5 0.07
43 17 0.24
44 35 0.50
45 10 0.14
46 2 0.03
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (42 bp):
TTTTTATTTTATATTTTTATTTTTATATTTTATTCTATTTTA
Done.