Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 46 of 109
Found at i:7942886 original size:25 final size:26
Alignment explanation
Indices: 7942831--7942884 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 26
7942821 TTTAATAATT
7942831 TAAAATATAATATAAAAAATATAAAA
1 TAAAATATAATATAAAAAATATAAAA
*
7942857 T-AAATATAATA-CAAAAATA-AAAA
1 TAAAATATAATATAAAAAATATAAAA
7942880 TAAAA
1 TAAAA
7942885 ATGATACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 10 0.38
25 10 0.38
26 1 0.04
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (26 bp):
TAAAATATAATATAAAAAATATAAAA
Found at i:7943040 original size:19 final size:21
Alignment explanation
Indices: 7943018--7943061 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
7943008 ATTTTATATT
7943018 ATATAAATTAT-TAA-ATTTA
1 ATATAAATTATATAACATTTA
*
7943037 ATATAAATTATATAACTTTTA
1 ATATAAATTATATAACATTTA
7943058 ATAT
1 ATAT
7943062 TTTACACGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 3 0.14
21 8 0.36
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATAAATTATATAACATTTA
Found at i:7957179 original size:2 final size:2
Alignment explanation
Indices: 7957172--7957196 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7957162 GCTTGAATTC
7957172 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7957197 AAGGTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7957457 original size:17 final size:17
Alignment explanation
Indices: 7957435--7957488 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
7957425 GACCCAGTCA
7957435 ATGCAACCTAAAAGATT
1 ATGCAACCTAAAAGATT
***
7957452 ATGCAA--T-AATCCTT
1 ATGCAACCTAAAAGATT
*
7957466 TTGCAACCTAAAAGATT
1 ATGCAACCTAAAAGATT
7957483 ATGCAA
1 ATGCAA
7957489 TAATCCTTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 6
0.65 0.20 0.15
Matches are distributed among these distances:
14 9 0.35
15 1 0.04
16 1 0.04
17 15 0.58
ACGTcount: A:0.43, C:0.19, G:0.11, T:0.28
Consensus pattern (17 bp):
ATGCAACCTAAAAGATT
Found at i:7957474 original size:31 final size:31
Alignment explanation
Indices: 7957436--7957501 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
7957426 ACCCAGTCAA
7957436 TGCAACCTAAAAGATTATGCAATAATCCTTT
1 TGCAACCTAAAAGATTATGCAATAATCCTTT
7957467 TGCAACCTAAAAGATTATGCAATAATCCTTT
1 TGCAACCTAAAAGATTATGCAATAATCCTTT
7957498 TGCA
1 TGCA
7957502 TTGCAAAGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (31 bp):
TGCAACCTAAAAGATTATGCAATAATCCTTT
Found at i:7960711 original size:24 final size:24
Alignment explanation
Indices: 7960679--7960745 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
7960669 TTATAACCGC
*
7960679 TGTGTATAAATGATATCAGAGTTA
1 TGTGTATAAATGATATCAGAGCTA
7960703 TGTGTATAAATGATATCAGAGCTA
1 TGTGTATAAATGATATCAGAGCTA
*
7960727 TGTGTATAAATGGTATCAG
1 TGTGTATAAATGATATCAG
7960746 GCCTAACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (24 bp):
TGTGTATAAATGATATCAGAGCTA
Found at i:7962210 original size:12 final size:12
Alignment explanation
Indices: 7962195--7962219 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7962185 CACACAAACC
7962195 AGATTCCTCCCA
1 AGATTCCTCCCA
7962207 AGATTCCTCCCA
1 AGATTCCTCCCA
7962219 A
1 A
7962220 CCTTTACCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.40, G:0.08, T:0.24
Consensus pattern (12 bp):
AGATTCCTCCCA
Found at i:7969274 original size:21 final size:22
Alignment explanation
Indices: 7969250--7969303 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
7969240 TTAGGATAAG
* *
7969250 ACTAAAGG-ACGATGAGTCATA
1 ACTAAAGGTACAATGACTCATA
7969271 ACT-AAGGTACAATGACTCATA
1 ACTAAAGGTACAATGACTCATA
*
7969292 ACT-AGGGTACAA
1 ACTAAAGGTACAA
7969304 AGGTCCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (22 bp):
ACTAAAGGTACAATGACTCATA
Found at i:7971315 original size:15 final size:15
Alignment explanation
Indices: 7971295--7971333 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
7971285 CTGTAAGTGA
7971295 TTGAGCAATATGAGG
1 TTGAGCAATATGAGG
7971310 TTGAGCAATATGAGG
1 TTGAGCAATATGAGG
7971325 TTGAGCAAT
1 TTGAGCAAT
7971334 GTACTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (15 bp):
TTGAGCAATATGAGG
Found at i:7984381 original size:21 final size:19
Alignment explanation
Indices: 7984357--7984400 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
7984347 TTTAGTGATT
*
7984357 TTATATTATGCTTATTTTTTA
1 TTATATTATAC-T-TTTTTTA
*
7984378 TTATATTTTACTTTTTTTA
1 TTATATTATACTTTTTTTA
7984397 TTAT
1 TTAT
7984401 TTGTCTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 1 0.05
21 9 0.43
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (19 bp):
TTATATTATACTTTTTTTA
Found at i:7984424 original size:3 final size:3
Alignment explanation
Indices: 7984416--7984444 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7984406 TCTTCTGTAA
7984416 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7984445 CACCACCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7984665 original size:21 final size:21
Alignment explanation
Indices: 7984635--7984675 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7984625 ATAATACGAA
7984635 AAAAATTATATAT-ATATTTT
1 AAAAATTATATATCATATTTT
*
7984655 AAAAATATATATTTCATATTT
1 AAAAAT-TATATATCATATTT
7984676 ATTCGTGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 6 0.33
22 6 0.33
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AAAAATTATATATCATATTTT
Found at i:7984969 original size:213 final size:215
Alignment explanation
Indices: 7984589--7985022 Score: 683
Period size: 213 Copynumber: 2.0 Consensus size: 215
7984579 TTAGATTTGA
*
7984589 TAATTTCAAACACGATATAATGATATAATACAAAAAATAATACGAAAAAAATTATATATATATTT
1 TAATTTCAAACACGATACAATGATATAATACAAAAAATAATAC--AAAAAATTATATATATATTT
* * * *
7984654 TAAAAATATATATTTCATATTTATTCGTGTTGAAACAAATTTCGACACGATATAATTATAGTCAT
64 TAAAAAAATATATTTCATATTTATTCGTATTGAAACAAATTTCGACACAACATAATTATAGTCAT
* * * *
7984719 ATATGTGTTAATTAATCTAAATACATGATATGATATGAATAATATATTTAATTTAATTTTTTTAT
129 ATATGTGTTAATTAATCTAAATACATGACACGATATGAATAATATATTTAATTTAATTTTATCAT
7984784 ATGAATACACATTTAATATATT
194 ATGAATACACATTTAATATATT
*
7984806 TAATTTCAAACACGATACAATGATATAATACAAAAAATAATAC-AAAAA-TATATATATGTTTTA
1 TAATTTCAAACACGATACAATGATATAATACAAAAAATAATACAAAAAATTATATATATATTTTA
* * * *
7984869 AAAAAATATATTTCGTATTTATTCGTATTGATACGAATTTTGACACAACATAATTATAGTCATAT
66 AAAAAATATATTTCATATTTATTCGTATTGAAACAAATTTCGACACAACATAATTATAGTCATAT
* *
7984934 ATGTGTTAATTAGTCTAAATATATGACACGATATGAATAATATATTTAATTTAATTTTATCATAT
131 ATGTGTTAATTAATCTAAATACATGACACGATATGAATAATATATTTAATTTAATTTTATCATAT
*
7984999 GAATACACGTTTAATATATT
196 GAATACACATTTAATATATT
7985019 TAAT
1 TAAT
7985023 ACGTTTAACA
Statistics
Matches: 200, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
213 153 0.76
214 5 0.03
217 42 0.21
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (215 bp):
TAATTTCAAACACGATACAATGATATAATACAAAAAATAATACAAAAAATTATATATATATTTTA
AAAAAATATATTTCATATTTATTCGTATTGAAACAAATTTCGACACAACATAATTATAGTCATAT
ATGTGTTAATTAATCTAAATACATGACACGATATGAATAATATATTTAATTTAATTTTATCATAT
GAATACACATTTAATATATT
Found at i:8001333 original size:24 final size:23
Alignment explanation
Indices: 8001301--8001345 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8001291 TAAAATATTT
* *
8001301 TTATTATTTATTTATATTTAAAAA
1 TTATAATTTATTAAT-TTTAAAAA
8001325 TTATAATTTATTAATTTTAAA
1 TTATAATTTATTAATTTTAAA
8001346 TTAAATTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATAATTTATTAATTTTAAAAA
Found at i:8008172 original size:31 final size:31
Alignment explanation
Indices: 8008110--8008204 Score: 95
Period size: 31 Copynumber: 3.1 Consensus size: 31
8008100 CGATGAGATG
* *
8008110 ATTTGTGTATTTATATTATA-TAAATATTAAA
1 ATTTATGTATTTATATTATATTTAATA-TAAA
*
8008141 ATTTATGTATTTATATTATATTTTATATAAA
1 ATTTATGTATTTATATTATATTTAATATAAA
* * * *
8008172 AATTATATATTAAAATT-TATATTAATATAAA
1 ATTTATGTATTTATATTATAT-TTAATATAAA
8008203 AT
1 AT
8008205 ATAAAATATA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
30 3 0.06
31 46 0.87
32 4 0.08
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
ATTTATGTATTTATATTATATTTAATATAAA
Found at i:8008194 original size:12 final size:12
Alignment explanation
Indices: 8008149--8008196 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
8008139 AAATTTATGT
*
8008149 ATTTATATTATA
1 ATTTATATTAAA
* *
8008161 TTTTATATAAAA
1 ATTTATATTAAA
8008173 ATTATATATTAAA
1 ATT-TATATTAAA
8008186 ATTTATATTAA
1 ATTTATATTAA
8008197 TATAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 19 0.63
13 11 0.37
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTATATTAAA
Found at i:8008282 original size:16 final size:14
Alignment explanation
Indices: 8008253--8008289 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
8008243 ATTATCACTA
8008253 AAATTTTAATTTTT
1 AAATTTTAATTTTT
8008267 AAATTTTATGATTTTT
1 AAATTTTA--ATTTTT
8008283 AAATTTT
1 AAATTTT
8008290 TTATTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.38
16 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
AAATTTTAATTTTT
Found at i:8008823 original size:7 final size:7
Alignment explanation
Indices: 8008811--8008982 Score: 56
Period size: 7 Copynumber: 24.6 Consensus size: 7
8008801 AATTTAAAAC
8008811 ATAATAT
1 ATAATAT
*
8008818 ATAATACG
1 ATAATA-T
8008826 AT-ATAT
1 ATAATAT
8008832 ATAATAT
1 ATAATAT
8008839 A-AATAT
1 ATAATAT
*
8008845 AAAATAT
1 ATAATAT
8008852 AATAATGAT
1 -ATAAT-AT
*
8008861 ATAATTT
1 ATAATAT
* *
8008868 AAAATTTT
1 ATAA-TAT
8008876 ATTAAT-T
1 A-TAATAT
*
8008883 ATTATAT
1 ATAATAT
*
8008890 -TTATAT
1 ATAATAT
*
8008896 TTAATAT
1 ATAATAT
*
8008903 AATAAAAT
1 -ATAATAT
* *
8008911 ATATTTT
1 ATAATAT
* *
8008918 ATATTTTT
1 ATA-ATAT
*
8008926 ATATTGAT
1 ATAAT-AT
8008934 ATAA-ATT
1 ATAATA-T
8008941 ATAATAT
1 ATAATAT
8008948 ATAAT-T
1 ATAATAT
8008954 -T-ATAT
1 ATAATAT
*
8008959 ATAAAAT
1 ATAATAT
*
8008966 ATGATAT
1 ATAATAT
8008973 -TAATAT
1 ATAATAT
8008979 ATAA
1 ATAA
8008983 ATTTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
4 2 0.02
5 2 0.02
6 25 0.20
7 62 0.48
8 33 0.26
9 4 0.03
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.47
Consensus pattern (7 bp):
ATAATAT
Found at i:8008830 original size:32 final size:30
Alignment explanation
Indices: 8008792--8008871 Score: 83
Period size: 32 Copynumber: 2.6 Consensus size: 30
8008782 TTCTTTTTTT
*
8008792 TAATATAATAATTTAAAACATAATATATAA
1 TAATATAATAATTTAAAACATAAAATATAA
* *
8008822 TACGATATATATAATAT-AAATATAAAATATAA
1 TA--ATATA-ATAATTTAAAACATAAAATATAA
8008854 TAATGAT-ATAATTTAAAA
1 TAAT-ATAATAATTTAAAA
8008872 TTTTATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
29 6 0.15
30 7 0.17
31 2 0.05
32 20 0.49
33 6 0.15
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (30 bp):
TAATATAATAATTTAAAACATAAAATATAA
Found at i:8008949 original size:14 final size:14
Alignment explanation
Indices: 8008932--8008992 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
8008922 TTTTATATTG
8008932 ATATAAATTATAAT
1 ATATAAATTATAAT
*
8008946 ATATAATTTAT-AT
1 ATATAAATTATAAT
*
8008959 ATAAAATATGATATTAAT
1 ATATAA-AT--TA-TAAT
*
8008977 ATATAAATTTTAAT
1 ATATAAATTATAAT
8008991 AT
1 AT
8008993 TTTATATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
13 7 0.19
14 17 0.46
15 1 0.03
16 2 0.05
17 3 0.08
18 7 0.19
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (14 bp):
ATATAAATTATAAT
Found at i:8008966 original size:20 final size:20
Alignment explanation
Indices: 8008930--8008983 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
8008920 ATTTTTATAT
* *
8008930 TGATATAAAT-TATAATATA
1 TGATATTAATATATAAAATA
*
8008949 T-A-ATTTATATATAAAATA
1 TGATATTAATATATAAAATA
8008967 TGATATTAATATATAAA
1 TGATATTAATATATAAA
8008984 TTTTAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 4 0.14
18 10 0.36
19 2 0.07
20 12 0.43
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (20 bp):
TGATATTAATATATAAAATA
Found at i:8008992 original size:20 final size:20
Alignment explanation
Indices: 8008940--8008993 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
8008930 TGATATAAAT
*
8008940 TATAATATATAAT-TT-ATA
1 TATAAAATATAATATTAATA
*
8008958 TATAAAATATGATATTAATA
1 TATAAAATATAATATTAATA
* *
8008978 TATAAATTTTAATATT
1 TATAAAATATAATATT
8008994 TTATATTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 11 0.38
19 2 0.07
20 16 0.55
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TATAAAATATAATATTAATA
Found at i:8009667 original size:16 final size:16
Alignment explanation
Indices: 8009634--8009677 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
8009624 TGATACGAAT
* *
8009634 AAATATAAAATAT-AA
1 AAATATATAATTTAAA
8009649 AAATAATATAATTTAAA
1 AAAT-ATATAATTTAAA
8009666 AAATATATAATT
1 AAATATATAATT
8009678 ATTTATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 15 0.60
17 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATATATAATTTAAA
Found at i:8009692 original size:37 final size:36
Alignment explanation
Indices: 8009644--8009768 Score: 107
Period size: 35 Copynumber: 3.4 Consensus size: 36
8009634 AAATATAAAA
*
8009644 TATAAAAATAATATAATTTAAAAAATATATAATTATT
1 TATAAATATAATATAA-TTAAAAAATATATAATTATT
* *
8009681 TATAAATATAATA-AAATAAAAAAT-TATATTTTATAT
1 TATAAATATAATATAATTAAAAAATATATA-ATTAT-T
* * *
8009717 T-TTAATATCAATATAATT--ATAATATATAATTTTT
1 TATAAATAT-AATATAATTAAAAAATATATAATTATT
8009751 ATATAAAATATAATATAA
1 -TAT-AAATATAATATAA
8009769 ATATATAAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
34 5 0.07
35 26 0.37
36 20 0.28
37 20 0.28
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (36 bp):
TATAAATATAATATAATTAAAAAATATATAATTATT
Found at i:8009694 original size:19 final size:19
Alignment explanation
Indices: 8009644--8009694 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
8009634 AAATATAAAA
8009644 TATAAAAATAAT-ATAATT
1 TATAAAAATAATAATAATT
*
8009662 TA-AAAAATATATAATTATT
1 TATAAAAATA-ATAATAATT
*
8009681 TATAAATATAATAA
1 TATAAAAATAATAA
8009695 AATAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 7 0.25
18 4 0.14
19 11 0.39
20 6 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TATAAAAATAATAATAATT
Found at i:8009744 original size:29 final size:31
Alignment explanation
Indices: 8009635--8009784 Score: 92
Period size: 30 Copynumber: 5.1 Consensus size: 31
8009625 GATACGAATA
8009635 AATATAAAATATAA--A-AATAATATAA-TTT
1 AATATAAAATATAATTATAAT-ATATAATTTT
* *
8009663 AA-A-AAATATATAATTAT--T-TATAAATAT
1 AATATAAA-ATATAATTATAATATATAATTTT
* * * *
8009690 AATA-AAATAAAAAATTATATTTTAT-ATTTT
1 AATATAAA-ATATAATTATAATATATAATTTT
*
8009720 AATAT-CAATATAATTATAATATATAATTTT
1 AATATAAAATATAATTATAATATATAATTTT
*
8009750 TATATAAAATATAA-TATAAATATATAAATTTT
1 AATATAAAATATAATTAT-AATATAT-AATTTT
8009782 AAT
1 AAT
8009785 GTTTTATATG
Statistics
Matches: 95, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
26 8 0.08
27 11 0.12
28 16 0.17
29 14 0.15
30 21 0.22
31 17 0.18
32 8 0.08
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.43
Consensus pattern (31 bp):
AATATAAAATATAATTATAATATATAATTTT
Found at i:8009745 original size:13 final size:12
Alignment explanation
Indices: 8009726--8009776 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
8009716 TTTTAATATC
8009726 AATAT-AATTAT
1 AATATAAATTAT
*
8009737 AATATATAATTTT
1 AATATA-AATTAT
* *
8009750 TATATAAAATAT
1 AATATAAATTAT
8009762 AATATAAATATAT
1 AATATAAAT-TAT
8009775 AA
1 AA
8009777 ATTTTAATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 5 0.16
12 11 0.35
13 15 0.48
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
AATATAAATTAT
Found at i:8009772 original size:18 final size:18
Alignment explanation
Indices: 8009631--8009778 Score: 65
Period size: 18 Copynumber: 8.2 Consensus size: 18
8009621 ATTTGATACG
8009631 AATA-AATATAAAATATAA
1 AATATAATAT-AAATATAA
*
8009649 AA-ATAATAT-AATTTAA
1 AATATAATATAAATATAA
* *
8009665 AAAAT-ATATAATTATTTATA
1 AATATAATATAA--ATATA-A
*
8009685 AATATAATA-AAATAAAA
1 AATATAATATAAATATAA
* * * **
8009702 AATTATATTTTATAT-TTT
1 AA-TATAATATAAATATAA
*
8009720 AATATCAATATAATTATAA
1 AATAT-AATATAAATATAA
* * **
8009739 TATATAATTTTTATATAA
1 AATATAATATAAATATAA
8009757 AATATAATATAAATATATA
1 AATATAATATAAATATA-A
8009776 AAT
1 AAT
8009779 TTTAATGTTT
Statistics
Matches: 93, Mismatches: 25, Indels: 23
0.66 0.18 0.16
Matches are distributed among these distances:
16 12 0.13
17 10 0.11
18 44 0.47
19 17 0.18
20 7 0.08
21 3 0.03
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATAATATAAATATAA
Found at i:8011916 original size:18 final size:18
Alignment explanation
Indices: 8011879--8011951 Score: 65
Period size: 18 Copynumber: 3.8 Consensus size: 18
8011869 ATATAATATA
* *
8011879 AATATAATATAAAAAATT
1 AATATAATTTAAAAATTT
*
8011897 AATATAATTTAAAATTTT
1 AATATAATTTAAAAATTT
*
8011915 AATAATTATTATATATAAATTT
1 AAT-ATAATT-TA-A-AAATTT
*
8011937 AATAAAATTTAAAAA
1 AATATAATTTAAAAA
8011952 ATAATATTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
18 21 0.48
19 6 0.14
20 4 0.09
21 5 0.11
22 8 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATAATTTAAAAATTT
Found at i:8013231 original size:2 final size:2
Alignment explanation
Indices: 8013224--8013249 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8013214 CACATTTTAG
8013224 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
8013250 CTCCACGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8013666 original size:32 final size:32
Alignment explanation
Indices: 8013627--8013719 Score: 109
Period size: 32 Copynumber: 2.9 Consensus size: 32
8013617 TAAATCTGAT
*
8013627 TTGATATATTTATATTATATAAAATATTAAAA
1 TTGATATATTTATATTATATAAAATATAAAAA
***
8013659 TTGATATATTTATATTATATTTTATATAAAAA
1 TTGATATATTTATATTATATAAAATATAAAAA
*
8013691 TT-ATATA-TTATAATGATATAAAAATATAA
1 TTGATATATTTAT-ATTATAT-AAAATATAA
8013720 GATATATATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
30 4 0.08
31 11 0.22
32 36 0.71
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (32 bp):
TTGATATATTTATATTATATAAAATATAAAAA
Found at i:8014147 original size:23 final size:21
Alignment explanation
Indices: 8014116--8014159 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
8014106 TTTTTGTAAG
*
8014116 TTTTTATTTTATTTTATCTTTT
1 TTTTTATTTTAATTTAT-TTTT
8014138 TTTTTAATTTTAATTTATTTTT
1 TTTTT-ATTTTAATTTATTTTT
8014160 AAACCTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTATTTTAATTTATTTTT
Found at i:8014639 original size:21 final size:19
Alignment explanation
Indices: 8014615--8014653 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
8014605 TATGAATACG
8014615 TTTAATTATTATATATTTATA
1 TTTAATTATTA-A-ATTTATA
*
8014636 TTTATTTATTAAATTTAT
1 TTTAATTATTAAATTTAT
8014654 TATATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTAATTATTAAATTTATA
Found at i:8021188 original size:11 final size:11
Alignment explanation
Indices: 8021172--8021202 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8021162 TTAAGAGCAA
8021172 GAACCAAGAAG
1 GAACCAAGAAG
8021183 GAACCAAGAAG
1 GAACCAAGAAG
*
8021194 AAACCAAGA
1 GAACCAAGA
8021203 CAAAAACCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.58, C:0.19, G:0.23, T:0.00
Consensus pattern (11 bp):
GAACCAAGAAG
Found at i:8027184 original size:5 final size:4
Alignment explanation
Indices: 8027162--8027201 Score: 55
Period size: 4 Copynumber: 9.8 Consensus size: 4
8027152 TAATGGTTGG
8027162 TTTA TTTA TTTA TTTA TTTTA TTTTA TTTA -TTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA TTTA TTTA TTT
8027202 TTAAAATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 3 0.09
4 22 0.65
5 9 0.26
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:8027204 original size:22 final size:22
Alignment explanation
Indices: 8027162--8027202 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
8027152 TAATGGTTGG
8027162 TTTATTTATTTATTTATTTTAT
1 TTTATTTATTTATTTATTTTAT
8027184 TTTATTTA-TTATTTATTTT
1 TTTATTTATTTATTTATTTT
8027203 TAAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTATTTATTTATTTATTTTAT
Found at i:8027211 original size:22 final size:22
Alignment explanation
Indices: 8027164--8027212 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8027154 ATGGTTGGTT
***
8027164 TATTTATTTATTTATTTTATTT
1 TATTTATTTATTTATTTTAAAA
8027186 TATTTA-TTATTTATTTTTAAAA
1 TATTTATTTATTTA-TTTTAAAA
8027208 TATTT
1 TATTT
8027213 TGTATGATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TATTTATTTATTTATTTTAAAA
Found at i:8027802 original size:15 final size:15
Alignment explanation
Indices: 8027782--8027819 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
8027772 GGCCCAAATG
8027782 ATAAAAAATT-TAGAA
1 ATAAAAAATTGTA-AA
8027797 AT-AAAAATTGTAAA
1 ATAAAAAATTGTAAA
8027811 ATAAAAAAT
1 ATAAAAAAT
8027820 AAATTTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (15 bp):
ATAAAAAATTGTAAA
Found at i:8028523 original size:33 final size:31
Alignment explanation
Indices: 8028441--8028523 Score: 80
Period size: 33 Copynumber: 2.6 Consensus size: 31
8028431 TTAATTAATT
* * *
8028441 TTAAATTATCCTAATTTTTGTTTGCTTGGTC
1 TTAAATTATCTTTATTTTTGTTTGCTTAGTC
8028472 TTAAATTAT-TTATCATTTTTGTTTGCGTTAG-C
1 TTAAATTATCTT-T-ATTTTTGTTTGC-TTAGTC
8028504 ATTAAATTGATCTTTATTTT
1 -TTAAATT-ATCTTTATTTT
8028524 GAAATGACAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
30 1 0.02
31 9 0.21
32 13 0.30
33 15 0.35
34 3 0.07
35 2 0.05
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.57
Consensus pattern (31 bp):
TTAAATTATCTTTATTTTTGTTTGCTTAGTC
Found at i:8033582 original size:16 final size:16
Alignment explanation
Indices: 8033529--8033588 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 16
8033519 AATGGATGAA
8033529 GTAAAAATATGAAAAT
1 GTAAAAATATGAAAAT
* *
8033545 GAAAAAATATGAAAAA
1 GTAAAAATATGAAAAT
*
8033561 ATAAAAA-ATGAAAAT
1 GTAAAAATATGAAAAT
*
8033576 GTGAAAAAAATGA
1 GT-AAAAATATGA
8033589 GAGAAAATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
15 8 0.22
16 24 0.67
17 4 0.11
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.18
Consensus pattern (16 bp):
GTAAAAATATGAAAAT
Found at i:8035399 original size:18 final size:17
Alignment explanation
Indices: 8035378--8035430 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
8035368 TACAAATCTA
*
8035378 AAAATTCTTGCGAATTTG
1 AAAATT-TTACGAATTTG
*
8035396 AAAATTATTATGAATTTG
1 AAAATT-TTACGAATTTG
8035414 AAAATTTGTACGAATTT
1 AAAATTT-TACGAATTT
8035431 AAGATTTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 1 0.03
18 29 0.97
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.42
Consensus pattern (17 bp):
AAAATTTTACGAATTTG
Found at i:8037329 original size:15 final size:15
Alignment explanation
Indices: 8037309--8037345 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
8037299 ACTCAAATAG
8037309 TAAAAAATT-TAGAAA
1 TAAAAAATTGTA-AAA
8037324 T-AAAAATTGTAAAA
1 TAAAAAATTGTAAAA
8037338 TAAAAAAT
1 TAAAAAAT
8037346 AAATTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
TAAAAAATTGTAAAA
Found at i:8037405 original size:101 final size:101
Alignment explanation
Indices: 8037290--8037471 Score: 328
Period size: 101 Copynumber: 1.8 Consensus size: 101
8037280 AAAGTTTTTT
8037290 CTAAATTAGACTCAAATAGTAAAAAATTTAGAAATAAAAATTGTAAAATAAAAAATAAATTTTGA
1 CTAAATTAGACTCAAATAGTAAAAAATTTAGAAATAAAAATTGTAAAATAAAAAATAAATTTTGA
* *
8037355 TGATGAAATTCTTAGTGAAAAATTAAATATATATTC
66 TAATAAAATTCTTAGTGAAAAATTAAATATATATTC
* *
8037391 CTAAATTAGGCTCAATTAGTAAAAAATTTAGAAATAAAAATTGTAAAATAAAAAATAAATTTTGA
1 CTAAATTAGACTCAAATAGTAAAAAATTTAGAAATAAAAATTGTAAAATAAAAAATAAATTTTGA
8037456 TAATAAAATTCTTAGT
66 TAATAAAATTCTTAGT
8037472 AATTGCAAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33
Consensus pattern (101 bp):
CTAAATTAGACTCAAATAGTAAAAAATTTAGAAATAAAAATTGTAAAATAAAAAATAAATTTTGA
TAATAAAATTCTTAGTGAAAAATTAAATATATATTC
Found at i:8037430 original size:15 final size:15
Alignment explanation
Indices: 8037410--8037446 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
8037400 GCTCAATTAG
8037410 TAAAAAATT-TAGAAA
1 TAAAAAATTGTA-AAA
8037425 T-AAAAATTGTAAAA
1 TAAAAAATTGTAAAA
8037439 TAAAAAAT
1 TAAAAAAT
8037447 AAATTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
TAAAAAATTGTAAAA
Found at i:8038170 original size:12 final size:12
Alignment explanation
Indices: 8038155--8038181 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8038145 AATTTCTCGT
8038155 TAAATAGATGAG
1 TAAATAGATGAG
8038167 TAAATAGATGAG
1 TAAATAGATGAG
8038179 TAA
1 TAA
8038182 GATATAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (12 bp):
TAAATAGATGAG
Found at i:8042802 original size:2 final size:2
Alignment explanation
Indices: 8042795--8042820 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8042785 GTCATGTATT
8042795 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
8042821 ACCAACAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8043984 original size:2 final size:2
Alignment explanation
Indices: 8043979--8044004 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8043969 TATAAAGTTG
8043979 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8044005 GTAGAGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8048026 original size:38 final size:38
Alignment explanation
Indices: 8047950--8048035 Score: 92
Period size: 38 Copynumber: 2.3 Consensus size: 38
8047940 AATATATTAT
* *
8047950 TTATTTA-TATATAATGTTAATTTTAATATATTATAATA
1 TTATTTATTAT-TAATGTTAATTTTAATATATAAAAATA
8047988 TTATTTATTATTAAT-TTAATATTT-ATATAATAAAAATA
1 TTATTTATTATTAATGTTAAT-TTTAATAT-ATAAAAATA
8048026 TT-TTT-TTATT
1 TTATTTATTATT
8048036 TTATTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
36 5 0.12
37 12 0.28
38 23 0.53
39 3 0.07
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (38 bp):
TTATTTATTATTAATGTTAATTTTAATATATAAAAATA
Found at i:8049400 original size:35 final size:34
Alignment explanation
Indices: 8049300--8049406 Score: 99
Period size: 34 Copynumber: 3.1 Consensus size: 34
8049290 TGAATTTCTA
* * * * *
8049300 GAAAGTCATATAATTTTCCGGAAGTCCATTTCCG
1 GAAAGTTATATGACTTTCCAGAAATCCATTTCCG
*
8049334 GAAAGTTATATGACTTTCTAGAAATCCATTTCCG
1 GAAAGTTATATGACTTTCCAGAAATCCATTTCCG
* * * *
8049368 TAAACGTT-TATGACTTTCCCCGAAATTCATTTCTG
1 GAAA-GTTATATGACTTT-CCAGAAATCCATTTCCG
8049403 GAAA
1 GAAA
8049407 CTTGTGTGAA
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
34 40 0.68
35 19 0.32
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (34 bp):
GAAAGTTATATGACTTTCCAGAAATCCATTTCCG
Found at i:8053043 original size:11 final size:11
Alignment explanation
Indices: 8053019--8053052 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
8053009 GGAAGATGAT
8053019 TTTCTTTCTTTC
1 TTTCTTT-TTTC
8053031 TTTCTTTTTTC
1 TTTCTTTTTTC
*
8053042 TTTATTTTTTC
1 TTTCTTTTTTC
8053053 ATGATTGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTCTTTTTTC
Found at i:8055659 original size:2 final size:2
Alignment explanation
Indices: 8055652--8055682 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8055642 GCTTTCTGAG
*
8055652 GT GT GT GT GT GT GT GT GT GT GT GT GT CT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
8055683 CCTGTGTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.48, T:0.48
Consensus pattern (2 bp):
GT
Found at i:8058786 original size:2 final size:2
Alignment explanation
Indices: 8058779--8058815 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8058769 GCATTAAATG
8058779 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8058816 GGGTGTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8073280 original size:15 final size:15
Alignment explanation
Indices: 8073260--8073290 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8073250 TGCCCGACAA
8073260 CCAAAAAAATGTAAC
1 CCAAAAAAATGTAAC
8073275 CCAAAAAAATGTAAC
1 CCAAAAAAATGTAAC
8073290 C
1 C
8073291 TAAATCAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.23, G:0.06, T:0.13
Consensus pattern (15 bp):
CCAAAAAAATGTAAC
Found at i:8078878 original size:14 final size:14
Alignment explanation
Indices: 8078859--8078894 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
8078849 AGAGTACGAA
8078859 GAATTATTTCCTTC
1 GAATTATTTCCTTC
*
8078873 GAATTATTTCCTTT
1 GAATTATTTCCTTC
8078887 GAATTATT
1 GAATTATT
8078895 ATTTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (14 bp):
GAATTATTTCCTTC
Found at i:8079527 original size:21 final size:22
Alignment explanation
Indices: 8079496--8079537 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
8079486 GATTTTCGAG
*
8079496 TTTCAGATTTTGAGATTTAGGA
1 TTTCAGATTTTAAGATTTAGGA
*
8079518 TTTC-GATTTTAAGGTTTAGG
1 TTTCAGATTTTAAGATTTAGG
8079538 GTCAATGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (22 bp):
TTTCAGATTTTAAGATTTAGGA
Found at i:8079895 original size:3 final size:3
Alignment explanation
Indices: 8079889--8079922 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8079879 TCCTTTGGAG
8079889 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8079923 TAGCATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8081003 original size:20 final size:19
Alignment explanation
Indices: 8080980--8081018 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8080970 AGTGGTATGA
*
8080980 TGGCTAGGTAGGGGCGTGGG
1 TGGCTAGGCA-GGGCGTGGG
*
8081000 TGGCTGGGCAGGGCGTGGG
1 TGGCTAGGCAGGGCGTGGG
8081019 CGACCAGCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.08, C:0.13, G:0.62, T:0.18
Consensus pattern (19 bp):
TGGCTAGGCAGGGCGTGGG
Found at i:8081138 original size:24 final size:24
Alignment explanation
Indices: 8081109--8081154 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8081099 TTGTTTCTTT
8081109 TTAATTT-TTATTAATTTGTAATAA
1 TTAATTTATTATTAATTT-TAATAA
*
8081133 TTAATTTATTTTTAATTTTAAT
1 TTAATTTATTATTAATTTTAAT
8081155 TAAATCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTAATTTATTATTAATTTTAATAA
Found at i:8081661 original size:36 final size:37
Alignment explanation
Indices: 8081620--8081722 Score: 97
Period size: 36 Copynumber: 2.9 Consensus size: 37
8081610 GAAAGAAATC
*
8081620 AGGATTAAACTGCAAGTCAAAAAAATAATGAGT-ATT
1 AGGATTAAACTGCAAGTCAAAAAAATAATGAGTGACT
* * * *
8081656 AGGATTAAA-TCGCGAGTC-AAAGATTAAAGA-TGACT
1 AGGATTAAACT-GCAAGTCAAAAAAATAATGAGTGACT
* * *
8081691 GGGACTAAACTGTAAGTCAAAAAAATAATGAG
1 AGGATTAAACTGCAAGTCAAAAAAATAATGAG
8081723 GATCGTGATT
Statistics
Matches: 50, Mismatches: 12, Indels: 9
0.70 0.17 0.13
Matches are distributed among these distances:
34 1 0.02
35 24 0.48
36 25 0.50
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.22
Consensus pattern (37 bp):
AGGATTAAACTGCAAGTCAAAAAAATAATGAGTGACT
Found at i:8081733 original size:71 final size:71
Alignment explanation
Indices: 8081625--8081786 Score: 202
Period size: 71 Copynumber: 2.3 Consensus size: 71
8081615 AAATCAGGAT
* * * *
8081625 TAAACTGCAAGTCAAAAAAATAATGAGTATTAGGATTAAATCGCGAGTCAAAGATTAAAGATGAC
1 TAAACTGTAAGTCAAAAAAATAATGAGGATTAGGATTAAATCGCAAATCAAAGATTAAAGATGAC
*
8081690 TGGGAC
66 TGGAAC
* * *
8081696 TAAACTGTAAGTCAAAAAAATAATGAGGA-TCGTGATTAAATCGTAAATCAAATATTAAAGATGA
1 TAAACTGTAAGTCAAAAAAATAATGAGGATTAG-GATTAAATCGCAAATCAAAGATTAAAGATGA
*
8081760 CTGGAAT
65 CTGGAAC
*
8081767 TAAA-TCGTAAGTAAAAAAAA
1 TAAACT-GTAAGTCAAAAAAA
8081787 AGAAACGATC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
70 3 0.04
71 76 0.96
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.24
Consensus pattern (71 bp):
TAAACTGTAAGTCAAAAAAATAATGAGGATTAGGATTAAATCGCAAATCAAAGATTAAAGATGAC
TGGAAC
Found at i:8081806 original size:106 final size:105
Alignment explanation
Indices: 8081696--8081996 Score: 345
Period size: 106 Copynumber: 2.8 Consensus size: 105
8081686 TGACTGGGAC
* * * * *
8081696 TAAACTGTAAGTCAAAAAAATAATGAGGATCGTGATTAAATCGTAAATCAAATATTAAAGATGAC
1 TAAACAGTAAGTCAGAGAAATAATGAGGATCG-GATTAAATCGTAAGTCAAAGATTAAAGATGAC
* * *
8081761 TGGAATTAAATCGTAAGTAAAAAAAAAGAAACGATCGAGAT
65 TGGGATTAAATCGTAAGTAAAAAAAAAGAAACAATCAAGAT
* ** *
8081802 TAAACAGTAAGTCAGAGAAATAATGAGGATCGGTATTAAAGCACAAGTCAAAGATTAAATATGAC
1 TAAACAGTAAGTCAGAGAAATAATGAGGATCGG-ATTAAATCGTAAGTCAAAGATTAAAGATGAC
* * * * *
8081867 TGGGACTAAACCGTAAGTTAAAAAATAGAAGCAATCAAGAT
65 TGGGATTAAATCGTAAGTAAAAAAAAAGAAACAATCAAGAT
* * *
8081908 TAAACCGTAAGTCAGAGAAATAATGAAGG-TCGGGATTAAATCGTGAGTCAAAGATTAAAGAGGA
1 TAAACAGTAAGTCAGAGAAATAATG-AGGATC-GGATTAAATCGTAAGTCAAAGATTAAAGATGA
* *
8081972 -TCGGGATTAAATCGTGAGTCAAAAA
64 CT-GGGATTAAATCGTAAGTAAAAAA
8081997 TTAAAGACTG
Statistics
Matches: 163, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
105 2 0.01
106 156 0.96
107 5 0.03
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.22
Consensus pattern (105 bp):
TAAACAGTAAGTCAGAGAAATAATGAGGATCGGATTAAATCGTAAGTCAAAGATTAAAGATGACT
GGGATTAAATCGTAAGTAAAAAAAAAGAAACAATCAAGAT
Found at i:8081965 original size:19 final size:19
Alignment explanation
Indices: 8081941--8082001 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
8081931 TGAAGGTCGG
8081941 GATTAAATCGTGAGTCAAA
1 GATTAAATCGTGAGTCAAA
** **
8081960 GATTAAAGAG-GA-TC-GG
1 GATTAAATCGTGAGTCAAA
8081976 GATTAAATCGTGAGTCAAA
1 GATTAAATCGTGAGTCAAA
*
8081995 AATTAAA
1 GATTAAA
8082002 GACTGAGACT
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
16 8 0.27
17 4 0.13
18 4 0.13
19 14 0.47
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (19 bp):
GATTAAATCGTGAGTCAAA
Found at i:8081983 original size:35 final size:35
Alignment explanation
Indices: 8081657--8082003 Score: 133
Period size: 35 Copynumber: 9.8 Consensus size: 35
8081647 ATGAGTATTA
* * *
8081657 GGATTAAATCGCGAGTCAAAGATTAAAGATGA-CTG
1 GGATTAAATCGTGAGTCAAAAATTAAAGAGGATC-G
* * * *
8081692 GGACTAAA-CTGTAAGTCAAAAAAATAATGAGGATCG
1 GGATTAAATC-GTGAGTC-AAAAATTAAAGAGGATCG
* * * * *
8081728 TGATTAAATCGTAAATCAAATATTAAAGATGA-CTG
1 GGATTAAATCGTGAGTCAAAAATTAAAGAGGATC-G
* * * *
8081763 GAATTAAATCGTAAGT-AAAAA-AAAAGAAACGATCG
1 GGATTAAATCGTGAGTCAAAAATTAAAG--AGGATCG
* * *
8081798 AGATTAAA-CAGTAAGTCAGAGAAA-TAATGAGGATCG
1 GGATTAAATC-GTGAGTCA-A-AAATTAAAGAGGATCG
* * *** * * *
8081834 GTATTAAAGCACAAGTCAAAGATTAAATATGA-CTG
1 GGATTAAATCGTGAGTCAAAAATTAAAGAGGATC-G
* * * * * *
8081869 GGACTAAACCGTAAGTTAAAAAATAGAAGCA--ATCA
1 GGATTAAATCGTGAGTCAAAAATTA-AAG-AGGATCG
* * * *
8081904 AGATTAAACCGTAAGTCAGAGAAA-TAATGAAGG-TCG
1 GGATTAAATCGTGAGTCA-A-AAATTAAAG-AGGATCG
*
8081940 GGATTAAATCGTGAGTCAAAGATTAAAGAGGATCG
1 GGATTAAATCGTGAGTCAAAAATTAAAGAGGATCG
8081975 GGATTAAATCGTGAGTCAAAAATTAAAGA
1 GGATTAAATCGTGAGTCAAAAATTAAAGA
8082004 CTGAGACTAA
Statistics
Matches: 233, Mismatches: 55, Indels: 48
0.69 0.16 0.14
Matches are distributed among these distances:
33 4 0.02
34 15 0.06
35 133 0.57
36 67 0.29
37 8 0.03
38 6 0.03
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.22
Consensus pattern (35 bp):
GGATTAAATCGTGAGTCAAAAATTAAAGAGGATCG
Found at i:8094968 original size:49 final size:49
Alignment explanation
Indices: 8094846--8095088 Score: 206
Period size: 49 Copynumber: 4.9 Consensus size: 49
8094836 ATTTTGAGGT
* * **
8094846 TTTTGGATTTTAGGGTTTGACATTTTGGATTTTAGGG-TTA-GGTTTTTGAG
1 TTTT-GATTTTAAGGTTTGAGATTTT-GATTTTAGGGTTTAGGGTTAGTG-G
* * * * *
8094896 TTTTAGAGTTT-GGGATTT-AGGATTTCGATTTTAGGGTTTAGGGTCAATGG
1 TTTT-GATTTTAAGG-TTTGA-GATTTTGATTTTAGGGTTTAGGGTTAGTGG
* * *
8094946 TTTTGATTTTAAGGTTTGGGATTTTGGTTTTAGGATTTAGGGTTAGTGG
1 TTTTGATTTTAAGGTTTGAGATTTTGATTTTAGGGTTTAGGGTTAGTGG
* * * * * *
8094995 TCTCGTTTTTAGGGTTTGAGATTTTGATTTTAAGGTTTAGGATTAGTGG
1 TTTTGATTTTAAGGTTTGAGATTTTGATTTTAGGGTTTAGGGTTAGTGG
* * *
8095044 TTTTTTATTTTAAGATTTGAGATTTTGGTTTTAGGGTTTAGGGTT
1 -TTTTGATTTTAAGGTTTGAGATTTTGATTTTAGGGTTTAGGGTT
8095089 TTAAGGTTTG
Statistics
Matches: 153, Mismatches: 33, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
49 87 0.57
50 61 0.40
51 5 0.03
ACGTcount: A:0.18, C:0.02, G:0.30, T:0.51
Consensus pattern (49 bp):
TTTTGATTTTAAGGTTTGAGATTTTGATTTTAGGGTTTAGGGTTAGTGG
Found at i:8095067 original size:29 final size:28
Alignment explanation
Indices: 8095016--8095075 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
8095006 GGGTTTGAGA
*
8095016 TTTTGATTTTAAGGTTTAGGATTAGTGGT
1 TTTTGATTTTAAGATTTAGGATT-GTGGT
* *
8095045 TTTTTATTTTAAGATTT-GAGATTTTGGT
1 TTTTGATTTTAAGATTTAG-GATTGTGGT
8095073 TTT
1 TTT
8095076 AGGGTTTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.58
Consensus pattern (28 bp):
TTTTGATTTTAAGATTTAGGATTGTGGT
Found at i:8095221 original size:3 final size:3
Alignment explanation
Indices: 8095213--8095264 Score: 61
Period size: 3 Copynumber: 16.3 Consensus size: 3
8095203 TAATAAAGAT
8095213 TTA TTA TTA TTA TTA TTA TCTA TTTA TTA TTTA TTAA TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA -TTA TT-A TTA TTA TTA TTA
8095261 TTA T
1 TTA T
8095265 ATTTTGATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
2 2 0.05
3 31 0.70
4 10 0.23
5 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8096645 original size:24 final size:24
Alignment explanation
Indices: 8096618--8096663 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8096608 GTCTCTTTTT
8096618 TTAATTT-TTATTAATTTGTAATAA
1 TTAATTTGTTATTAATTT-TAATAA
*
8096642 TTAATTTGTTTTTAATTTTAAT
1 TTAATTTGTTATTAATTTTAAT
8096664 TAAATCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
TTAATTTGTTATTAATTTTAATAA
Found at i:8098814 original size:59 final size:59
Alignment explanation
Indices: 8098722--8098839 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
8098712 TAGCCCTTTT
*
8098722 TGTTCTCATGCAGTGAATGCTTGTGCTAATAAAACCCCTCATTTTTATTATGTTTTCGG
1 TGTTCTCATGCAGCGAATGCTTGTGCTAATAAAACCCCTCATTTTTATTATGTTTTCGG
*
8098781 TGTTCTCATGCAGCGAATGCTTGTGCTTATAAAACCCCTCATTTTTATTATGTTTTCGG
1 TGTTCTCATGCAGCGAATGCTTGTGCTAATAAAACCCCTCATTTTTATTATGTTTTCGG
8098840 CTATAGATGT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.42
Consensus pattern (59 bp):
TGTTCTCATGCAGCGAATGCTTGTGCTAATAAAACCCCTCATTTTTATTATGTTTTCGG
Found at i:8102018 original size:16 final size:16
Alignment explanation
Indices: 8101999--8102030 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8101989 TTTTTTTGGT
8101999 GTATTTGGTCTTTGTC
1 GTATTTGGTCTTTGTC
*
8102015 GTATTTGGTTTTTGTC
1 GTATTTGGTCTTTGTC
8102031 TTTTATTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.09, G:0.25, T:0.59
Consensus pattern (16 bp):
GTATTTGGTCTTTGTC
Found at i:8103117 original size:20 final size:20
Alignment explanation
Indices: 8103072--8103122 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
8103062 CGTAAAATAT
***
8103072 TAATA-ATTTTATATATTTA
1 TAATATATTTTATATAAAAA
*
8103091 TATTATATTTTATATAAAAA
1 TAATATATTTTATATAAAAA
8103111 TAATATATTTTA
1 TAATATATTTTA
8103123 ATTTATATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATATATTTTATATAAAAA
Found at i:8103118 original size:31 final size:30
Alignment explanation
Indices: 8103081--8103157 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 30
8103071 TTAATAATTT
*
8103081 TATATATTTATA-TTATATTTTATATAAAAA
1 TATATATTTATATTTATA-TTAATATAAAAA
8103111 TAATATATTT-TAATTTATATTAATATAAAAA
1 T-ATATATTTAT-ATTTATATTAATATAAAAA
*
8103142 TATATAATATATATTT
1 TATAT-ATTTATATTT
8103158 TAAAATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
30 6 0.15
31 28 0.70
32 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (30 bp):
TATATATTTATATTTATATTAATATAAAAA
Found at i:8104785 original size:21 final size:21
Alignment explanation
Indices: 8104759--8104800 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8104749 TCATAAATTT
8104759 TCAATTGGGTGAAATTTGATC
1 TCAATTGGGTGAAATTTGATC
*
8104780 TCAATTGGGTGGAATTTGATC
1 TCAATTGGGTGAAATTTGATC
8104801 GGTTTCTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (21 bp):
TCAATTGGGTGAAATTTGATC
Found at i:8115844 original size:2 final size:2
Alignment explanation
Indices: 8115837--8115873 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
8115827 CCCTCGAAGA
*
8115837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8115874 GCAAAAGCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8117662 original size:37 final size:38
Alignment explanation
Indices: 8117588--8117662 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
8117578 TTCTCATATT
*
8117588 TTTTTAATATAAAATATGGGGCGTTACATTATGTGAAA
1 TTTTTAATATAAAATATGGGGCGTTACATTATATGAAA
* * *
8117626 TTTTTAATATGAGAT-TCGGGG-GTTACGTTATATGAAA
1 TTTTTAATATAAAATAT-GGGGCGTTACATTATATGAAA
8117663 GCATTGGTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 15 0.47
38 17 0.53
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.40
Consensus pattern (38 bp):
TTTTTAATATAAAATATGGGGCGTTACATTATATGAAA
Found at i:8121017 original size:2 final size:2
Alignment explanation
Indices: 8121004--8121055 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
8120994 ACCAGATGGG
* *
8121004 AT AT AT AC AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8121046 AT AT AT AT AT
1 AT AT AT AT AT
8121056 GGAGGGTACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8122425 original size:18 final size:18
Alignment explanation
Indices: 8122402--8122447 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
8122392 ATGATAGTGA
8122402 TGAAACCAATTCTTTCAG
1 TGAAACCAATTCTTTCAG
8122420 TGAAACCAATTCTTTCAG
1 TGAAACCAATTCTTTCAG
**
8122438 CAAAACCAAT
1 TGAAACCAAT
8122448 AACTCCATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (18 bp):
TGAAACCAATTCTTTCAG
Found at i:8123420 original size:23 final size:22
Alignment explanation
Indices: 8123390--8123436 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
8123380 TGATAGGATC
8123390 ATATAAAAAAATATAATATAAA
1 ATATAAAAAAATATAATATAAA
*
8123412 ATATAAAAATAATATAATTTAAA
1 ATATAAAAA-AATATAATATAAA
8123435 AT
1 AT
8123437 TTTAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATAAAAAAATATAATATAAA
Found at i:8132307 original size:11 final size:12
Alignment explanation
Indices: 8132291--8132337 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 12
8132281 TATTACGGTA
8132291 AATTTG-AATTT
1 AATTTGAAATTT
8132302 AATTTGAAATTT
1 AATTTGAAATTT
*
8132314 ATTCTTTGAAATTT
1 A--ATTTGAAATTT
8132328 AATTT-AAATT
1 AATTTGAAATT
8132338 CAATCAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 11 0.35
12 9 0.29
14 11 0.35
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.53
Consensus pattern (12 bp):
AATTTGAAATTT
Found at i:8132984 original size:19 final size:19
Alignment explanation
Indices: 8132949--8132985 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8132939 TAAGCGGCAA
**
8132949 TTGAAATAATATTTGATAG
1 TTGAAATAATAAATGATAG
8132968 TTGAAATAATAAATGATA
1 TTGAAATAATAAATGATA
8132986 AGCGGCAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TTGAAATAATAAATGATAG
Found at i:8134549 original size:12 final size:13
Alignment explanation
Indices: 8134532--8134560 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8134522 TTACTAGTAC
8134532 ATTTATTTATT-T
1 ATTTATTTATTGT
8134544 ATTTATTTATTGT
1 ATTTATTTATTGT
8134557 ATTT
1 ATTT
8134561 TAAATATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
ATTTATTTATTGT
Found at i:8138357 original size:9 final size:9
Alignment explanation
Indices: 8138343--8138367 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8138333 CAAACTTACA
8138343 AAAATCTTG
1 AAAATCTTG
8138352 AAAATCTTG
1 AAAATCTTG
8138361 AAAATCT
1 AAAATCT
8138368 ATGACTTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (9 bp):
AAAATCTTG
Found at i:8141096 original size:17 final size:17
Alignment explanation
Indices: 8141070--8141127 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
8141060 GAAAGTTCCC
* *
8141070 AAAAGGAAAAACAAAGG
1 AAAAGAAAAAAAAAAGG
*
8141087 GAAAGAAAAAAAAAAGG
1 AAAAGAAAAAAAAAAGG
* *
8141104 AAAACAAAAAGAAGAAATG
1 AAAAGAAAAA-AA-AAAGG
8141123 AAAAG
1 AAAAG
8141128 GAAAGGAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
17 22 0.69
18 2 0.06
19 8 0.25
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAAGAAAAAAAAAAGG
Found at i:8159997 original size:2 final size:2
Alignment explanation
Indices: 8159990--8160023 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8159980 TATGTGAACC
8159990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8160024 CTGCTTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8163972 original size:2 final size:2
Alignment explanation
Indices: 8163965--8163998 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8163955 TCAATAAGTC
8163965 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8163999 AGGAAGAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8166572 original size:18 final size:18
Alignment explanation
Indices: 8166551--8166603 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
8166541 ATTAATAATT
8166551 TATATATATTATATTTTA
1 TATATATATTATATTTTA
* * *
8166569 TATAAAAATTATATATTA
1 TATATATATTATATTTTA
*
8166587 TACTTTATATTAATATT
1 TA-TATATATT-ATATT
8166604 AAATTAAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 17 0.65
19 5 0.19
20 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TATATATATTATATTTTA
Found at i:8166649 original size:11 final size:10
Alignment explanation
Indices: 8166624--8166662 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
8166614 TATATTTTTT
*
8166624 AATTTTATTA
1 AATTTTATAA
8166634 AATTTATATAA
1 AATTT-TATAA
8166645 AATTTTATTAA
1 AATTTTA-TAA
8166656 AATTTTA
1 AATTTTA
8166663 AATTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 7 0.27
11 19 0.73
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
AATTTTATAA
Found at i:8173050 original size:49 final size:50
Alignment explanation
Indices: 8172976--8173076 Score: 170
Period size: 50 Copynumber: 2.0 Consensus size: 50
8172966 TTTTGGGACC
*
8172976 GACTGTAAATGGTATCAGATCTAG-TTTGCCAAGAAGATTATGAACTGTT
1 GACTGTAAATGGTATCAGATCTAGTTTTACCAAGAAGATTATGAACTGTT
8173025 GACTGTAAATGGTATCAGAGT-TAGTTTTACCAAGAAGATTATGAACTGTT
1 GACTGTAAATGGTATCAGA-TCTAGTTTTACCAAGAAGATTATGAACTGTT
8173075 GA
1 GA
8173077 AATTATGATC
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
49 22 0.45
50 27 0.55
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (50 bp):
GACTGTAAATGGTATCAGATCTAGTTTTACCAAGAAGATTATGAACTGTT
Found at i:8178916 original size:14 final size:14
Alignment explanation
Indices: 8178884--8178926 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 14
8178874 GGAATTTTTT
*
8178884 ATTTAAA-ATAACA
1 ATTTAAATATAATA
*
8178897 AATTAAATATAATA
1 ATTTAAATATAATA
8178911 ATTTAAAATATAATA
1 ATTT-AAATATAATA
8178926 A
1 A
8178927 AATAATATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 6 0.24
14 8 0.32
15 11 0.44
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
ATTTAAATATAATA
Found at i:8179055 original size:12 final size:13
Alignment explanation
Indices: 8179038--8179067 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
8179028 TTATATTTTT
8179038 ATTTTAATACA-A
1 ATTTTAATACATA
8179050 ATTTTAATACATA
1 ATTTTAATACATA
8179063 ATTTT
1 ATTTT
8179068 TATATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTTTAATACATA
Found at i:8180322 original size:17 final size:18
Alignment explanation
Indices: 8180300--8180333 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8180290 TATTTCCATT
*
8180300 AAAATTTTGATT-AATTC
1 AAAATTTGGATTGAATTC
8180317 AAAATTTGGATTGAATT
1 AAAATTTGGATTGAATT
8180334 AATCAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (18 bp):
AAAATTTGGATTGAATTC
Found at i:8183776 original size:20 final size:20
Alignment explanation
Indices: 8183753--8183806 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
8183743 TATATTTGTA
8183753 TTATATAAAATATTAATAAT
1 TTATATAAAATATTAATAAT
** *
8183773 TTATATATTCATA-TAATATT
1 TTATATA-AAATATTAATAAT
8183793 TTATATAAAA-ATTA
1 TTATATAAAATATTA
8183807 CGTATTACAA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
18 1 0.04
19 3 0.11
20 20 0.74
21 3 0.11
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TTATATAAAATATTAATAAT
Found at i:8183888 original size:31 final size:31
Alignment explanation
Indices: 8183827--8183890 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
8183817 TTTATATTAA
**
8183827 TATTAAAATATAAAATTTTTATTTTTAATTT
1 TATTAAAATATAAAATTTTTATTTAAAATTT
*
8183858 TATTAAATATATATAATTTTTA-TTAAAATTT
1 TATTAAA-ATATAAAATTTTTATTTAAAATTT
8183889 TA
1 TA
8183891 ATTCGTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 16 0.55
32 13 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (31 bp):
TATTAAAATATAAAATTTTTATTTAAAATTT
Found at i:8183915 original size:15 final size:15
Alignment explanation
Indices: 8183896--8183930 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
8183886 TTTTAATTCG
8183896 TATTAT-TTTTATAT
1 TATTATATTTTATAT
8183910 TGATTATATTTTATAT
1 T-ATTATATTTTATAT
8183926 TATTA
1 TATTA
8183931 AATTCGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.05
15 9 0.47
16 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (15 bp):
TATTATATTTTATAT
Found at i:8184505 original size:2 final size:2
Alignment explanation
Indices: 8184498--8184540 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8184488 AGTTTCAATC
8184498 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8184540 G
1 G
8184541 TGAAATCTCG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8198792 original size:19 final size:19
Alignment explanation
Indices: 8198760--8198803 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8198750 TATCAGAGTC
* **
8198760 TGTGTAACTATATATTCAG
1 TGTGTAAATATATAACCAG
*
8198779 TGTGTAAATCTATAACCAG
1 TGTGTAAATATATAACCAG
8198798 TGTGTA
1 TGTGTA
8198804 TTTTCTGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (19 bp):
TGTGTAAATATATAACCAG
Found at i:8199130 original size:24 final size:24
Alignment explanation
Indices: 8199101--8199149 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8199091 GTAGATTCAT
8199101 TTTGTGAATCTCATAATATAGTTA
1 TTTGTGAATCTCATAATATAGTTA
8199125 TTTGTGAATCTCATAATATAGTTA
1 TTTGTGAATCTCATAATATAGTTA
8199149 T
1 T
8199150 AAGTAAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (24 bp):
TTTGTGAATCTCATAATATAGTTA
Found at i:8199915 original size:20 final size:20
Alignment explanation
Indices: 8199890--8199932 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8199880 CTTTTTCCAC
8199890 AAATATATATTTCTTAAACA
1 AAATATATATTTCTTAAACA
*
8199910 AAATATATATTTGTTAAACA
1 AAATATATATTTCTTAAACA
8199930 AAA
1 AAA
8199933 AAACTGTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.37
Consensus pattern (20 bp):
AAATATATATTTCTTAAACA
Found at i:8202188 original size:57 final size:57
Alignment explanation
Indices: 8202100--8202214 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
8202090 AAACAAAATC
8202100 TTTAGTTTTGAAAACTGATTTTATCAGTTTCAGCAATAAAAAAGCAACCAACTTTTT
1 TTTAGTTTTGAAAACTGATTTTATCAGTTTCAGCAATAAAAAAGCAACCAACTTTTT
8202157 TTTAGTTTTGAAAACTGATTTTATCAGTTTCAGCAATAAAAAAGCAACCAACTTTTT
1 TTTAGTTTTGAAAACTGATTTTATCAGTTTCAGCAATAAAAAAGCAACCAACTTTTT
8202214 T
1 T
8202215 ACTTTTATTG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (57 bp):
TTTAGTTTTGAAAACTGATTTTATCAGTTTCAGCAATAAAAAAGCAACCAACTTTTT
Found at i:8216079 original size:24 final size:24
Alignment explanation
Indices: 8216047--8216094 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
8216037 TCATCCTTCC
8216047 CATACTATGTGAAACATACAATCT
1 CATACTATGTGAAACATACAATCT
8216071 CATACTATGTGAAACATACAATCT
1 CATACTATGTGAAACATACAATCT
8216095 TTGGCAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (24 bp):
CATACTATGTGAAACATACAATCT
Found at i:8224679 original size:20 final size:20
Alignment explanation
Indices: 8224631--8224680 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8224621 TATATATATT
*
8224631 TTTATATATTTAATAAATAAA
1 TTTAT-TATTAAATAAATAAA
*
8224652 TTTTTTATTAAATAACATAAA
1 TTTATTATTAAATAA-ATAAA
8224673 -TTATTATT
1 TTTATTATT
8224681 TTAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TTTATTATTAAATAAATAAA
Found at i:8225081 original size:23 final size:23
Alignment explanation
Indices: 8225038--8225081 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8225028 TATTATTATT
*
8225038 TTTAAAAATTAATATTTAATAAA
1 TTTAAAAATTAATATTCAATAAA
*
8225061 TTTAAAATTTAA-ATCTCAATA
1 TTTAAAAATTAATAT-TCAATA
8225082 TCTTACCGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAAAAATTAATATTCAATAAA
Found at i:8225826 original size:16 final size:17
Alignment explanation
Indices: 8225805--8225837 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8225795 TGAAATTAAC
8225805 TCGAAAA-ATGTGATAA
1 TCGAAAATATGTGATAA
8225821 TCGAAAATTATGTGATA
1 TCGAAAA-TATGTGATA
8225838 GAAATATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (17 bp):
TCGAAAATATGTGATAA
Found at i:8230245 original size:37 final size:36
Alignment explanation
Indices: 8230182--8230262 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 36
8230172 TTTTAGAAAC
8230182 AAGGTTGGAAACATCTTCGTGGTTTCCTATAAAGACA
1 AAGG-TGGAAACATCTTCGTGGTTTCCTATAAAGACA
* *
8230219 TAGGTGGAAACATACGTT-GTGGTTTCCTATCAAGACA
1 AAGGTGGAAACAT-C-TTCGTGGTTTCCTATAAAGACA
8230256 AAGGTGG
1 AAGGTGG
8230263 TGGAAACATC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
36 9 0.23
37 28 0.72
38 2 0.05
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (36 bp):
AAGGTGGAAACATCTTCGTGGTTTCCTATAAAGACA
Found at i:8233537 original size:3 final size:3
Alignment explanation
Indices: 8233529--8233558 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8233519 TCAGCCAAGC
8233529 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8233559 CACGTGAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8234057 original size:87 final size:86
Alignment explanation
Indices: 8233931--8234090 Score: 232
Period size: 85 Copynumber: 1.8 Consensus size: 86
8233921 CCACTTGATT
**
8233931 TAAAAGAAAACCTTCTCAATCATTGCTGTAAAGATCCTCAAATTTGTCAGAGAGGCAGAAGTGCT
1 TAAAAGAAAACCTTCTCAATCATTGCTACAAAGATCCTCAAATTTGTC--AGAGGCAGAAGTGCT
8233996 CAATCTGTTTGATATCCACGATC
64 CAATCTGTTTGATATCCACGATC
* ** * *
8234019 TAAAAGAAACCCTTCTCTGTCA-TGCTACAAAGATCCTCAATTTTGTCAGAGGCATAAGTGCTCA
1 TAAAAGAAAACCTTCTCAATCATTGCTACAAAGATCCTCAAATTTGTCAGAGGCAGAAGTGCTCA
8234083 ATCTGTTT
66 ATCTGTTT
8234091 CTCAGGTTGG
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
85 24 0.37
87 22 0.34
88 19 0.29
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (86 bp):
TAAAAGAAAACCTTCTCAATCATTGCTACAAAGATCCTCAAATTTGTCAGAGGCAGAAGTGCTCA
ATCTGTTTGATATCCACGATC
Found at i:8241318 original size:14 final size:14
Alignment explanation
Indices: 8241299--8241326 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8241289 TTTTTATATA
8241299 TTTAAAAAATTAAT
1 TTTAAAAAATTAAT
8241313 TTTAAAAAATTAAT
1 TTTAAAAAATTAAT
8241327 ATATATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTAAAAAATTAAT
Found at i:8241445 original size:14 final size:14
Alignment explanation
Indices: 8241426--8241453 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8241416 CATAGTCACA
8241426 AGTTTTACATGATG
1 AGTTTTACATGATG
8241440 AGTTTTACATGATG
1 AGTTTTACATGATG
8241454 GCCATATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
AGTTTTACATGATG
Found at i:8244046 original size:9 final size:9
Alignment explanation
Indices: 8244034--8244059 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8244024 TTCCTCAAAT
8244034 GACCCAACG
1 GACCCAACG
8244043 GACCCAACG
1 GACCCAACG
8244052 GACCCAAC
1 GACCCAAC
8244060 TCTTGTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.46, G:0.19, T:0.00
Consensus pattern (9 bp):
GACCCAACG
Found at i:8247392 original size:13 final size:13
Alignment explanation
Indices: 8247374--8247402 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8247364 AAGTTAAACT
8247374 CATAGAATATCTA
1 CATAGAATATCTA
8247387 CATAGAATATCTA
1 CATAGAATATCTA
8247400 CAT
1 CAT
8247403 TAGGCTCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (13 bp):
CATAGAATATCTA
Found at i:8248842 original size:2 final size:2
Alignment explanation
Indices: 8248835--8248867 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8248825 AGTCAAAAGC
8248835 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8248868 CCTTGAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8262916 original size:17 final size:18
Alignment explanation
Indices: 8262883--8262916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8262873 TTTATTATAT
*
8262883 TTTTAAAAATTATATAAA
1 TTTTAAAAAATATATAAA
8262901 TTTTAAAAAATA-ATAA
1 TTTTAAAAAATATATAA
8262917 TTTAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TTTTAAAAAATATATAAA
Found at i:8263451 original size:15 final size:15
Alignment explanation
Indices: 8263432--8263466 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8263422 CCATCATTTC
8263432 ATATAATAAATATAT
1 ATATAATAAATATAT
* *
8263447 TTATAATATATATAT
1 ATATAATAAATATAT
8263462 ATATA
1 ATATA
8263467 TACCTACTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATAATAAATATAT
Found at i:8270353 original size:16 final size:16
Alignment explanation
Indices: 8270317--8270356 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
8270307 TCACAATTCG
*
8270317 ATATATATTAAATTAT
1 ATATTTATTAAATTAT
*
8270333 ATATTTATTTAATTAT
1 ATATTTATTAAATTAT
8270349 ATATTTAT
1 ATATTTAT
8270357 ATTTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATATTTATTAAATTAT
Found at i:8271412 original size:9 final size:9
Alignment explanation
Indices: 8271398--8271438 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
8271388 GATATTTAAA
8271398 TTTTAATAT
1 TTTTAATAT
8271407 TTTTAATAT
1 TTTTAATAT
8271416 TTTTAAT-T
1 TTTTAATAT
* *
8271424 TATTATTAT
1 TTTTAATAT
8271433 TTTTAA
1 TTTTAA
8271439 AAAATTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 6 0.22
9 21 0.78
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:8271433 original size:17 final size:18
Alignment explanation
Indices: 8271398--8271438 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8271388 GATATTTAAA
*
8271398 TTTTAATATTTTTAATAT
1 TTTTAATATTATTAATAT
*
8271416 TTTTAAT-TTATTATTAT
1 TTTTAATATTATTAATAT
8271433 TTTTAA
1 TTTTAA
8271439 AAAATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTAATATTATTAATAT
Found at i:8271550 original size:12 final size:13
Alignment explanation
Indices: 8271511--8271559 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
8271501 TATTTATATC
*
8271511 ATATAAAATATTT
1 ATATAATATATTT
*
8271524 ATATTTATATATTT
1 ATA-TAATATATTT
*
8271538 ATATGATAT-TTT
1 ATATAATATATTT
8271550 ATATAATATA
1 ATATAATATA
8271560 AAATTATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
12 11 0.37
13 8 0.27
14 11 0.37
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATATAATATATTT
Found at i:8272115 original size:21 final size:22
Alignment explanation
Indices: 8272083--8272123 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8272073 AATTTAAAAT
*
8272083 TTTAATAAAAATTATAAATAAA
1 TTTAATAAAAATTAAAAATAAA
8272105 TTTAA-AAAAATTAAAAATA
1 TTTAATAAAAATTAAAAATA
8272124 TGTATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TTTAATAAAAATTAAAAATAAA
Found at i:8272682 original size:12 final size:11
Alignment explanation
Indices: 8272625--8272673 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
8272615 TATTCGATTT
8272625 AATTTAAATTA
1 AATTTAAATTA
8272636 AATTTAAA-TA
1 AATTTAAATTA
* * *
8272646 GTATATATATTA
1 -AATTTAAATTA
8272658 AATTTAAATTA
1 AATTTAAATTA
8272669 AATTT
1 AATTT
8272674 TGAATTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
10 2 0.07
11 26 0.87
12 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:8272810 original size:21 final size:21
Alignment explanation
Indices: 8272753--8272812 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 21
8272743 AAATTTTATA
8272753 AAATATA-AAT-A-ATTATTT
1 AAATATATAATAATATTATTT
* *
8272771 -CATATATAA-AAT-TTTTTT
1 AAATATATAATAATATTATTT
8272789 AAATATATAATAATATTATTT
1 AAATATATAATAATATTATTT
8272810 AAA
1 AAA
8272813 AAATTAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
17 5 0.16
18 8 0.25
19 8 0.25
20 3 0.09
21 8 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
AAATATATAATAATATTATTT
Found at i:8273666 original size:16 final size:15
Alignment explanation
Indices: 8273639--8273674 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
8273629 CATATTTTAA
*
8273639 AATAATTATAAAATT
1 AATAATTATAAAATC
8273654 AATAATATATAAAATC
1 AATAAT-TATAAAATC
8273670 AATAA
1 AATAA
8273675 AAATGATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATTATAAAATC
Done.