Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 51 of 109
Found at i:9697600 original size:19 final size:20
Alignment explanation
Indices: 9697565--9697612 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
9697555 GATGTGACAT
*
9697565 CTTATTTTTCTTATTTTTAC
1 CTTATTTTTCTTATTTTTAA
9697585 CTTATTTTTAC-T-TTTTTAA
1 CTTATTTTT-CTTATTTTTAA
*
9697604 ATTATTTTT
1 CTTATTTTT
9697613 TAATTCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 14 0.56
20 10 0.40
21 1 0.04
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (20 bp):
CTTATTTTTCTTATTTTTAA
Found at i:9698594 original size:36 final size:34
Alignment explanation
Indices: 9698527--9698595 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
9698517 TAATCAGGTA
* *
9698527 TATATATACTGTATTATTTACTTAATTTTATATT
1 TATATATACTGTATTATTTAATAAATTTTATATT
9698561 TATATATA-TGTATTATATTAATAAAGTTATTATAT
1 TATATATACTGTATTAT-TTAATAAA-TT-TTATAT
9698596 AATTCTCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 8 0.27
34 14 0.47
35 2 0.07
36 6 0.20
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (34 bp):
TATATATACTGTATTATTTAATAAATTTTATATT
Found at i:9702811 original size:14 final size:14
Alignment explanation
Indices: 9702792--9702833 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
9702782 AGCTTAGCTT
*
9702792 TTTTTTTGTTTTTG
1 TTTTTTTATTTTTG
9702806 TTTTTTTA-TTTT-
1 TTTTTTTATTTTTG
*
9702818 TTATTTTATTTTTG
1 TTTTTTTATTTTTG
9702832 TT
1 TT
9702834 ATTAAATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (14 bp):
TTTTTTTATTTTTG
Found at i:9702830 original size:21 final size:21
Alignment explanation
Indices: 9702793--9702836 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9702783 GCTTAGCTTT
* *
9702793 TTTTTTGTTTTTGTTTTTTTA
1 TTTTTTATTTTTGTTTTGTTA
9702814 TTTTTTATTTTAT-TTTTGTTA
1 TTTTTTATTTT-TGTTTTGTTA
9702835 TT
1 TT
9702837 AAATCAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.09, C:0.00, G:0.07, T:0.84
Consensus pattern (21 bp):
TTTTTTATTTTTGTTTTGTTA
Found at i:9704359 original size:21 final size:21
Alignment explanation
Indices: 9704319--9704360 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9704309 TGCCTAGTTA
*
9704319 TTTAATTTTTTTTCTCTTTTT
1 TTTAATTTTTTTTATCTTTTT
9704340 TTTAATCTTTTTTTAT-TTTTT
1 TTTAAT-TTTTTTTATCTTTTT
9704361 CCTTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTAATTTTTTTTATCTTTTT
Found at i:9705402 original size:25 final size:24
Alignment explanation
Indices: 9705363--9705409 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
9705353 TTATTTTGTC
* *
9705363 CTTTTCATTTTTTTTCTTTTATTAT
1 CTTTTCAATTATTTT-TTTTATTAT
9705388 CTTTTCAATTATTTTTTTTATT
1 CTTTTCAATTATTTTTTTTATT
9705410 TTTTAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (24 bp):
CTTTTCAATTATTTTTTTTATTAT
Found at i:9705403 original size:21 final size:21
Alignment explanation
Indices: 9705379--9705419 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9705369 ATTTTTTTTC
*
9705379 TTTTATTATCTTTTCAATTAT
1 TTTTATTATCTTTTAAATTAT
* *
9705400 TTTTTTTATTTTTTAAATTA
1 TTTTATTATCTTTTAAATTA
9705420 GATGGCTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTATTATCTTTTAAATTAT
Found at i:9713566 original size:24 final size:24
Alignment explanation
Indices: 9713526--9713572 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
9713516 AAAACATATC
* *
9713526 ATATTATGATTATAAATA-AATTA
1 ATATTATAATTAAAAATATAATTA
9713549 ATATTAATAATTAAAAATATAATT
1 ATATT-ATAATTAAAAATATAATT
9713573 TTTAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
ATATTATAATTAAAAATATAATTA
Found at i:9716011 original size:22 final size:21
Alignment explanation
Indices: 9715978--9716018 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9715968 TAATGTTGTA
9715978 GGTTTAAGTTTTTTTTTTTTT
1 GGTTTAAGTTTTTTTTTTTTT
* *
9715999 GGTTTTAGCTTTTTTTTTTT
1 GGTTTAAGTTTTTTTTTTTT
9716019 GCTGTTGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.02, G:0.15, T:0.76
Consensus pattern (21 bp):
GGTTTAAGTTTTTTTTTTTTT
Found at i:9716662 original size:24 final size:25
Alignment explanation
Indices: 9716617--9716664 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
9716607 CCTTTAAGAT
*
9716617 GGAAAATAGAAAGTAAGAAATAATA
1 GGAAAAAAGAAAGTAAGAAATAATA
9716642 GGAAAAAAG-AAGT-AGAGAATAAT
1 GGAAAAAAGAAAGTAAGA-AATAAT
9716665 CTTGAGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 10 0.48
25 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (25 bp):
GGAAAAAAGAAAGTAAGAAATAATA
Found at i:9717580 original size:10 final size:10
Alignment explanation
Indices: 9717562--9717593 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
9717552 AGTGTTTGAT
*
9717562 TTTGTAAAGC
1 TTTGAAAAGC
9717572 TTTGAAAAGC
1 TTTGAAAAGC
9717582 TTTGAAAAGC
1 TTTGAAAAGC
9717592 TT
1 TT
9717594 AGTTGTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (10 bp):
TTTGAAAAGC
Found at i:9722118 original size:27 final size:27
Alignment explanation
Indices: 9722085--9722143 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
9722075 TCAATAAAAC
9722085 TTAACAAAGATGAA-GAAGGTAAATGTA
1 TTAACAAAGATGAATG-AGGTAAATGTA
*
9722112 TTAACAAAGATGAATGAGGTAAATTTA
1 TTAACAAAGATGAATGAGGTAAATGTA
9722139 TTAAC
1 TTAAC
9722144 TCTAAATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.49, C:0.05, G:0.19, T:0.27
Consensus pattern (27 bp):
TTAACAAAGATGAATGAGGTAAATGTA
Found at i:9729300 original size:19 final size:20
Alignment explanation
Indices: 9729276--9729315 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
9729266 ACACATATAA
9729276 TATATGAAATAAT-AAATTT
1 TATATGAAATAATAAAATTT
*
9729295 TATATGTAATAATAAAATTT
1 TATATGAAATAATAAAATTT
9729315 T
1 T
9729316 TTCATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
TATATGAAATAATAAAATTT
Found at i:9747787 original size:181 final size:181
Alignment explanation
Indices: 9747191--9748678 Score: 1191
Period size: 181 Copynumber: 8.3 Consensus size: 181
9747181 TCAACATTTG
* * * * *
9747191 ATAATATTAATTAATTAATATTCCTAAAATTAATAAGTAAAAGATTGAAAACATAAATCTATTTA
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
* * * * * * * * *
9747256 TCAAA-AAATTTAAATGGTTATAATTATTTGAAAAATTATCTAATTCAAATAATTATGATATTTT
66 CCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATTTT
* * * * *
9747320 GTTTTGTCATAAAATAATTGTTTCTATTTATACAAGTTTA-TT--CA-AAA
131 GTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* * * * * * *
9747367 ATAATTTTAATTTATTAATATTCCATAAATTACTAAGTGAAAGATATAAAAAAATAAAAT-TATT
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGAT-TTAAAAGAT-AAATCTATT
* * *
9747431 TACCGAATAAGTTTAAATAGTCATGATTATTTGAATAATTATCTATATCAAATAATTATGACATT
64 TACCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATT
** * * * ***
9747496 TTG-TTTGTCGTAGAATAATTGTTTCTATTCATTCAAGCTTATTCGGAATAAA
129 TTGTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* ** ** ** *
9747548 ATAATATTATTTTAACAATATTTTGAAAATTTTTAAGTAAATGATTTAAAAGATAAATCTATTTA
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
** * * * ** *
9747613 TGAAACAAGTTCAAATAGTCATGACTATTCGAATAATGGTATATTTCAAATAATTATGACATTTT
66 CCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATTTT
* ** * * * * *
9747678 GTTTTATTATGGACTAATTATTTCTGTTCATACATGTTTATTTGAAATAAA
131 GTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* * * *
9747729 ATAAAACTAATTTACTAATATTTTAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
* * * * * * *
9747794 CCAAA-ATA-TTCAAATAATTATGATTATTTAAACAA-TATTTATTTCAAGTAATTATGATATTT
66 CCAAATA-AGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATTT
* * * *
9747856 TGTTTTGTCATAAAATAATTATTTCTATTTATACAAGTTTATATAAAATAAA
130 TGTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* * * * * *
9747908 ATACTTTTAATTTATTAATAGTTCAAAAATTATTAACTAAAAGATATAAAAGATAAATCTATTTA
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
** * * * * *
9747973 CCAAATAAGCGCAAATAGTTATGATTATTTAAACAGTTATCTATTTCTAATAATTATGAGC-TTT
66 CCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGA-CATTT
* * * * * ** * *
9748037 TGTTTTGTCATATAACAATTGTTTTTATTCATGTAAGCTTATTCAAATTAAA
130 TGTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* * * *
9748089 ATAATATT-ATATTAATAGTATTTCAAAACTTAATAAGTAAATGATTTAAAAGATAAAATCTATT
1 ATAATATTAAT-TTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGAT-AAATCTATT
* * * ** * * * * *
9748153 TGCAAAAAAAGTTTGAAT-GATCATAACTATTTGAATAATTATGTATTTCAAATAATTAAGACTT
64 TACCAAATAAGTTCAAATAG-TCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACAT
* * * *
9748217 TTTGTTTTGTTACAGAATAATTATTTCTGTTCATACATA-CTTATTCAAAATAAA
128 TTTGTTTTGTTATAAAATAATTATTTCTATTCATACA-AGCTTATTTAAAATAAA
* * * * * *
9748271 ATTATACTAATTTATTAATATTTCAAAAATT-ATGAGGAAAAAGATTTAAAAGATAAGTCTGTTT
1 ATAATATTAATTTATTAATATTTCAAAAATTAAT-AAGTAAAAGATTTAAAAGATAAATCTATTT
* * * * * * * * *
9748335 ACTAAATTA-TTCAAAGAGTCATGACTATTTGAATTACTATCTATTTTAAATAATTAAGATATTT
65 ACCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATTT
* * * * ** *
9748399 TATTTTGTCATAAAACAATTATTTTTGCTCATAAAAGCTTATTTAAAATAAA
130 TGTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
* * ** * *
9748451 ATAATATTAATTTATTAGTATTCCAAAAATTCGTAAGTAAAAGATGTAAAAGATAAGTATGCTAA
1 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAA--AT-CTAT
* * * * * * * * * * * *
9748516 TT---GAATAAGTTTAAATTGTTATAACTACTTAAACAATTATTTATTTCAAATAATTAAGATAT
63 TTACCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACAT
* * * * * * * * **
9748578 TTTATTTTGTCATAGAACAATTACTTCTGTTCATAAAAGCATATTTTGCAAT-AA
128 TTTGTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTA-TTTAAAATAAA
* *
9748632 ATAATATT-ATTTAATTAATATCTCAAAAATTAATAAGTAAAATATTT
1 ATAATATTAATTT-ATTAATATTTCAAAAATTAATAAGTAAAAGATTT
9748679 TATTAATAAG
Statistics
Matches: 1051, Mismatches: 231, Indels: 55
0.79 0.17 0.04
Matches are distributed among these distances:
176 39 0.04
177 49 0.05
178 57 0.05
179 130 0.12
180 255 0.24
181 372 0.35
182 142 0.14
183 7 0.01
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (181 bp):
ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTA
CCAAATAAGTTCAAATAGTCATGATTATTTGAATAATTATCTATTTCAAATAATTATGACATTTT
GTTTTGTTATAAAATAATTATTTCTATTCATACAAGCTTATTTAAAATAAA
Found at i:9747990 original size:360 final size:356
Alignment explanation
Indices: 9747194--9748678 Score: 1138
Period size: 360 Copynumber: 4.1 Consensus size: 356
9747184 ACATTTGATA
* * * * * * *
9747194 ATATTAATTAATTAATATTCCTAAAATTAATAAGTAAAAGATTGAAAACATAAATCTATTTATCA
1 ATATTAATTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAGATAAATCTATTTACCA
* * * * * * * * *
9747259 AA-AAATTTAAATGGTTATAATTATTTGAAAAATTATCTAATTCAAATAATTATGATATTTTGTT
66 AATAAGTTCAAATAGTCATGACTATTTGAATAA-TATCTATTTCAAATAATTATGACATTTTGTT
* * * * * * * * *
9747323 TTGTCATAA-AATAATTGTTTCTATTTATACAAGTTTATTCAAAA-ATAAT--TTTAATTTATTA
130 TTGTTATAACAATTA-T-TTT-TGTTCATAAAAGCTTATTTAAAATAAAATAATATAATTTATTA
* * * * *
9747384 ATATTCCATAAATTACTAAGTGAAAGATATAAAAAAATAAAAT-TATTTACCGAATAAGT-TTAA
192 ATATTCCAAAAATTAATAAGTAAAAGAT-TTAAAAGATAAAATCTATTTACC-AA-AA-TATTAA
* * * *
9747447 ATAGTCATGATTATTTGAATAATTATCTATATCAAATAATTATGACATTTTG-TTTGTCGTAGAA
253 ATAATCATGATTATTTGAATAATTATCTATTTCAAATAATTATGATATTTTGTTTTGTCATAGAA
* * **
9747511 TAATTGTTTCTATTCATTCAAGCTTATTCGGAATAAAAT
318 TAATTATTTCTATTCATACAAGCTTATTCAAAATAAAAT
* ** ** * * **
9747550 AATATTATTTTAACAATATTTTGAAAATTTTTAAGTAAATGATTTAAAAGATAAATCTATTTATG
1 -ATATTAATTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAGATAAATCTATTTACC
* * * *
9747615 AAACAAGTTCAAATAGTCATGACTATTCGAATAATGGTATATTTCAAATAATTATGACATTTTGT
65 AAATAAGTTCAAATAGTCATGACTATTTGAATAAT-ATCTATTTCAAATAATTATGACATTTTGT
* * * * * * * * *
9747680 TTTATTATGGACTAATTATTTCTGTTCATACATGTTTATTTGAAATAAAATAAAACTAATTTACT
129 TTTGTTAT-AAC-AATTATTTTTGTTCATAAAAGCTTATTTAAAATAAAATAATA-TAATTTATT
**
9747745 AATATTTTAAAAATTAATAAGTAAAAGATTTAAAAGAT-AAATCTATTTACCAAAATATTCAAAT
191 AATATTCCAAAAATTAATAAGTAAAAGATTTAAAAGATAAAATCTATTTACCAAAATATT-AAAT
* * * * * *
9747809 AATTATGATTATTTAAACAA-TATTTATTTCAAGTAATTATGATATTTTGTTTTGTCATAAAATA
255 AATCATGATTATTTGAATAATTATCTATTTCAAATAATTATGATATTTTGTTTTGTCATAGAATA
* *
9747873 ATTATTTCTATTTATACAAGTTTATAT-AAAATAAAAT
320 ATTATTTCTATTCATACAAGCTTAT-TCAAAATAAAAT
* * * *
9747910 ACTTTTAATTTATTAATAGTTCAAAAATTATTAACTAAAAGATATAAAAGATAAATCTATTTACC
1 A-TATTAATTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAGATAAATCTATTTACC
** * * * * * *
9747975 AAATAAGCGCAAATAGTTATGATTATTTAAACAGTTATCTATTTCTAATAATTATGAGC-TTTTG
65 AAATAAGTTCAAATAGTCATGACTATTTGAATA-ATATCTATTTCAAATAATTATGA-CATTTTG
* * ** * * * *
9748039 TTTTGTCATATAACAATTGTTTTTATTCATGTAAGCTTATTCAAATTAAAATAATATTATATTAA
128 TTTTGT--TATAACAATTATTTTTGTTCATAAAAGCTTATTTAAAATAAAATAATATAAT-TTAT
* * * * * * * *
9748104 TAGTATTTCAAAACTTAATAAGTAAATGATTTAAAAGATAAAATCTATTTGCAAAAAAAGTTTGA
190 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAGATAAAATCTATTTACCAAAATA--TTAA
* * * * * * *
9748169 ATGATCATAACTATTTGAATAATTATGTATTTCAAATAATTAAGACT-TTTTGTTTTGTTACAGA
253 ATAATCATGATTATTTGAATAATTATCTATTTCAAATAATTATGA-TATTTTGTTTTGTCATAGA
*
9748233 ATAATTATTTCTGTTCATACATA-CTTATTCAAAATAAAATT
317 ATAATTATTTCTATTCATACA-AGCTTATTCAAAATAAAA-T
* * * * * * *
9748274 ATACTAATTTATTAATATTTCAAAAATTATGAGGAAAAAGATTTAAAAGATAAGTCTGTTTACTA
1 ATATTAATTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAGATAAATCTATTTACCA
* * * * * * *
9748339 AATTA-TTCAAAGAGTCATGACTATTTGAATTACTATCTATTTTAAATAATTAAGATATTTTATT
66 AATAAGTTCAAATAGTCATGACTATTTGAA-TAATATCTATTTCAAATAATTATGACATTTTGTT
* *
9748403 TTGTCATAAAACAATTATTTTTGCTCATAAAAGCTTATTTAAAATAAAATAATATTAATTTATTA
130 TTGT--TATAACAATTATTTTTGTTCATAAAAGCTTATTTAAAATAAAATAATA-TAATTTATTA
* ** * * * *
9748468 GTATTCCAAAAATTCGTAAGTAAAAGATGTAAAAGATAAGTATGCTAATTGA--ATAAGT-TTAA
192 ATATTCCAAAAATTAATAAGTAAAAGATTTAAAAGATAA-AAT-CT-ATTTACCA-AAATATTAA
** * * * * * * * * *
9748530 ATTGTTATAACTACTTAAACAATTATTTATTTCAAATAATTAAGATATTTTATTTTGTCATAGAA
253 ATAATCATGATTATTTGAATAATTATCTATTTCAAATAATTATGATATTTTGTTTTGTCATAGAA
* * * * * ***
9748595 CAATTACTTCTGTTCATAAAAGCATATTTTGCAAT-AAAT
318 TAATTATTTCTATTCATACAAGCTTA-TTCAAAATAAAAT
* * *
9748634 AATATT-ATTTAATTAATATCTCAAAAATTAATAAGTAAAATATTT
1 -ATATTAATTT-ATTAATATTTCAAAAATTATTAAGTAAAAGATTT
9748679 TATTAATAAG
Statistics
Matches: 892, Mismatches: 196, Indels: 76
0.77 0.17 0.07
Matches are distributed among these distances:
357 55 0.06
358 72 0.08
359 40 0.04
360 247 0.28
361 151 0.17
362 185 0.21
363 131 0.15
364 8 0.01
365 3 0.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (356 bp):
ATATTAATTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAGATAAATCTATTTACCA
AATAAGTTCAAATAGTCATGACTATTTGAATAATATCTATTTCAAATAATTATGACATTTTGTTT
TGTTATAACAATTATTTTTGTTCATAAAAGCTTATTTAAAATAAAATAATATAATTTATTAATAT
TCCAAAAATTAATAAGTAAAAGATTTAAAAGATAAAATCTATTTACCAAAATATTAAATAATCAT
GATTATTTGAATAATTATCTATTTCAAATAATTATGATATTTTGTTTTGTCATAGAATAATTATT
TCTATTCATACAAGCTTATTCAAAATAAAAT
Found at i:9748490 original size:722 final size:717
Alignment explanation
Indices: 9747197--9748506 Score: 1521
Period size: 722 Copynumber: 1.8 Consensus size: 717
9747187 TTTGATAATA
* * *
9747197 TTAATTAATTAATATTCCTAAAATTAATAAGTAAAAGATTGAAAACATAAATCTATTTATCAAAA
1 TTAATTAATTAATATTCCAAAAATTAATAACTAAAAGATTGAAAACATAAATCTATTTACCAAAA
*** * *
9747262 AATTTAAATGGTTATAATTATTTGAAAAATTATCTAATTCAAATAATTATGATATTTTGTTTTGT
66 AACGCAAATAGTTATAATTATTTGAAAAATTATCTAATTCAAATAATTATGAGATTTTGTTTTGT
* * * * *
9747327 CATAAAATAATTGTTTCTATTTATACAAGTTTATTCAAAAATAATTTTAATTTATTAATATTCCA
131 CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAAATAATATTAATTTAATAATATTCCA
* ** * *
9747392 TAAATTACTAAGTGAAAGATATAAAAAAATAAAATTATTTACCGAATAAGTTTAAATAGTCATGA
196 TAAATTAATAAGTGAAAGATATAAAAAAATAAAATTATTTACAAAAAAAGTTTAAATAGTCATAA
* * ** *
9747457 TTATTTGAATAATTATCTATATCAAATAATTATGACATTTTGTTTGTCGTAGAATAATTGTTTCT
261 CTATTTGAATAATTATCTATATCAAATAATTAAGACATTTTGTTTGTCACAGAATAATTATTTCT
* ** * * ** * * *
9747522 ATTCATTCAAGCTTATTCGGAATAAAATAATATTATTTTAACAATATTTTGAAAATTTTTAAGTA
326 ATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAACAATATTTCAAAAATTATGAAGAA
* * *
9747587 AATGATTTAAAAGATAAATCTATTTATGAAACAAGTTCAAATAGTCATGACTATTCGAATAATGG
391 AAAGATTTAAAAGATAAATCTATTTATGAAACAAGTTCAAAGAGTCATGACTATTCGAATAATGA
* * * ** * * * *
9747652 TATATTTCAAATAATTATGACATTTTGTTTTATTATGGACTAATTATTTCTGTTCATACATGTTT
456 TATATTTCAAATAATTAAGACATTTTATTTTATCATAAACTAATTATTTCTGCTCATAAAAGCTT
* ** *
9747717 ATTTGAAATAAAATAAAACTAATTTACTAATATTTTAAAAATTAATAAGTAAAAGATTTAAAAGA
521 ATTTAAAATAAAATAAAACTAATTTACTAATATTCCAAAAATTAATAAGTAAAAGATGTAAAAGA
9747782 TAAATCTATTTACCAAAATATTCAAATAATTATGATTATTTAAACAATATTTATTTCAAGTAATT
586 TAAATCTATTTACCAAAATATTCAAATAATTATGATTATTTAAACAATATTTATTTCAAGTAATT
9747847 ATGATATTTTGTTTTGTCATAAAATAATTATTTCTATTTATACAAGTTTATATAAAATAAAATAC
651 ATGATATTTTGTTTTGTCATAAAATAATTATTTCTATTTATACAAGTTTATATAAAATAAAATAC
9747912 TT
716 TT
* * *
9747914 TTAATTTATTAATAGTT-CAAAAATTATTAACTAAAAGATAT-AAAAGATAAATCTATTTACCAA
1 TTAATTAATTAATA-TTCCAAAAATTAATAACTAAAAGAT-TGAAAACATAAATCTATTTACCAA
* * * * * *
9747977 ATAAGCGCAAATAGTTATGATTATTT-AAACAGTTATCTATTTCTAATAATTATGAGCTTTTGTT
64 A-AAACGCAAATAGTTATAATTATTTGAAA-AATTATCTAATTCAAATAATTATGAGATTTTGTT
* * **
9748041 TTGTCATATAACAATTGTTTTTATTCATGTAAGCTTATTCAAATTAAAATAATATT-ATATTAAT
127 TTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTC--A--AAAATAATATTAAT-TTAAT
* * * * *
9748105 AGTATTTCA-AAACTTAATAAGT-AAATGAT-TTAAAAGATAAAATCTATTTGCAAAAAAAGTTT
187 AATATTCCATAAA-TTAATAAGTGAAA-GATATAAAAAAATAAAAT-TATTTACAAAAAAAGTTT
* * * * *
9748167 GAAT-GATCATAACTATTTGAATAATTATGTATTTCAAATAATTAAGACTTTTTGTTTTGTTACA
249 AAATAG-TCATAACTATTTGAATAATTATCTATATCAAATAATTAAGACATTTTG-TTTGTCACA
* * **
9748231 GAATAATTATTTCTGTTCATACATA-CTTATTCAAAATAAAATTATACTAATTTATTAATATTTC
312 GAATAATTATTTCTATTCATACA-AGCTTATTCAAAATAAAATAATACTAATTTAACAATATTTC
* * * **
9748295 AAAAATTATGAGGAAAAAGATTTAAAAGATAAGTCTGTTTACT-AAATTA-TTCAAAGAGTCATG
376 AAAAATTATGAAGAAAAAGATTTAAAAGATAAATCTATTTA-TGAAACAAGTTCAAAGAGTCATG
* * * * * *
9748358 ACTATTTGAATTACT-ATCTATTTTAAATAATTAAGATATTTTATTTTGTCATAAAAC-AATTAT
440 ACTATTCGAA-TAATGATATATTTCAAATAATTAAGACATTTTATTTTATCAT-AAACTAATTAT
* * * * * **
9748421 TTTTGCTCATAAAAGCTTATTTAAAATAAAATAATATTAATTTATTAGTATTCCAAAAATTCGTA
503 TTCTGCTCATAAAAGCTTATTTAAAATAAAATAAAACTAATTTACTAATATTCCAAAAATTAATA
9748486 AGTAAAAGATGTAAAAGATAA
568 AGTAAAAGATGTAAAAGATAA
9748507 GTATGCTAAT
Statistics
Matches: 481, Mismatches: 94, Indels: 31
0.79 0.16 0.05
Matches are distributed among these distances:
717 56 0.12
718 83 0.17
720 1 0.00
721 21 0.04
722 219 0.46
723 99 0.21
724 2 0.00
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.41
Consensus pattern (717 bp):
TTAATTAATTAATATTCCAAAAATTAATAACTAAAAGATTGAAAACATAAATCTATTTACCAAAA
AACGCAAATAGTTATAATTATTTGAAAAATTATCTAATTCAAATAATTATGAGATTTTGTTTTGT
CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAAATAATATTAATTTAATAATATTCCA
TAAATTAATAAGTGAAAGATATAAAAAAATAAAATTATTTACAAAAAAAGTTTAAATAGTCATAA
CTATTTGAATAATTATCTATATCAAATAATTAAGACATTTTGTTTGTCACAGAATAATTATTTCT
ATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTAACAATATTTCAAAAATTATGAAGAA
AAAGATTTAAAAGATAAATCTATTTATGAAACAAGTTCAAAGAGTCATGACTATTCGAATAATGA
TATATTTCAAATAATTAAGACATTTTATTTTATCATAAACTAATTATTTCTGCTCATAAAAGCTT
ATTTAAAATAAAATAAAACTAATTTACTAATATTCCAAAAATTAATAAGTAAAAGATGTAAAAGA
TAAATCTATTTACCAAAATATTCAAATAATTATGATTATTTAAACAATATTTATTTCAAGTAATT
ATGATATTTTGTTTTGTCATAAAATAATTATTTCTATTTATACAAGTTTATATAAAATAAAATAC
TT
Found at i:9748641 original size:543 final size:536
Alignment explanation
Indices: 9747206--9748672 Score: 1402
Period size: 543 Copynumber: 2.7 Consensus size: 536
9747196 ATTAATTAAT
* * * * * * * *
9747206 TAATATTCCTAAAATTAATAAGTAAAAGATTGAAAACATAAATCTATTTATCAAAAAATTTAAAT
1 TAATATTTCAAAAATTAATAAGAAAAAGATTTAAAAGATAAATCTATTTACCAAAATATTCAAA-
* * * * * * *
9747271 G-GTTATAATTATTTGAAA-AATTATCTAATTCAAATAATTATGATATTTTGTTTTGTCATAAAA
65 GAATCATGACTATTT-AAACAA-TATCTATTTCAAATAATTAAGATATTTTATTTTGTCATAAAA
* * * * * ** * *
9747334 TAATTGTTTCTATTTATACAAG-TT-TAT-TCA-AAAATAATTTTAATTTATTAATA-TTCCATA
128 CAATTATTTCTACTCATAAAAGCTTATATAAAATAAAATAATATTAATTTATTAATAGTT-CAAA
* * * * * *
9747394 AATTACTAAGTGAAAGATATAAAAAAATAAAAT-TATTTACCGAATAAGTTTAAATAGTCATGAT
192 AATTAGTAACTAAAAGATAT-AAAAGAT-AAATCTAATT--CGAATAAGTTTAAATAGTTATGAT
* * * * * *
9747458 TATTTGAATAATTATCTATATCAAATAATTATGACATTTTGTTTGTCGTAGAATAATTGTTTCTA
253 TATTTAAACAATTATCTATTTCAAATAATTATGACATTTTTTTTGTCATAGAACAATTGTTTCTA
** * * * * **
9747523 TTCATTCAAGCT-TATTCGGAATAAAATAATATTATTTTAACAATATTTTGAAAATTTTTAAGTA
318 TTCATAAAAGCTAT-TTTGCAATAAAATAATATTA-TTTAATAATA-TTTCAAAATTAATAAGTA
** * * *
9747587 AATGATTTAAAAGATAAATCTATTTATGAAACAAGTTCAAATAGTCATGACTATTCGAATAATGG
380 AATGATTTAAAAGATAAATCTATTTACAAAAAAAGTTCAAATAGTCATAACTATTCGAATAATGA
* ** * **
9747652 TATATTTCAAATAATTATGACATTTTGTTTTATTATGGACTAATTATTTCTGTTCATACATGTTT
445 TATATTTCAAATAATTAAGACATTTTGTTTTATTACAGAATAATTATTTCTGTTCATACATACTT
**
9747717 ATTTGAAATAAAATAAAACTAATTTAC
510 ATTCAAAATAAAATAAAACTAATTTAC
* * *
9747744 TAATATTTTAAAAATTAATAAGTAAAAGATTTAAAAGATAAATCTATTTACCAAAATATTCAAAT
1 TAATATTTCAAAAATTAATAAGAAAAAGATTTAAAAGATAAATCTATTTACCAAAATATTCAAAG
* * * * * * *
9747809 AATTATGATTATTTAAACAATATTTATTTCAAGTAATTATGATATTTTGTTTTGTCATAAAATAA
66 AATCATGACTATTTAAACAATATCTATTTCAAATAATTAAGATATTTTATTTTGTCATAAAACAA
* * * * * *
9747874 TTATTTCTATTTATACAAGTTTATATAAAATAAAATACTTTTAATTTATTAATAGTTCAAAAATT
131 TTATTTCTACTCATAAAAGCTTATATAAAATAAAATAATATTAATTTATTAATAGTTCAAAAATT
* * * ***
9747939 ATTAACTAAAAGATATAAAAGATAAATCTATTTACCAAATAAGCGCAAATAGTTATGATTATTTA
196 AGTAACTAAAAGATATAAAAGATAAATCTAATT--CGAATAAGTTTAAATAGTTATGATTATTTA
* * * *
9748004 AACAGTTATCTATTTCTAATAATTATGAGC-TTTTGTTTTGTCATATAACAATTGTTTTTATTCA
259 AACAATTATCTATTTCAAATAATTATGA-CATTTT-TTTTGTCATAGAACAATTGTTTCTATTCA
** * *
9748068 TGTAAGCT-TATT-CAAATTAAAATAATATTATATTAATAGTATTTCAAAACTTAATAAGTAAAT
322 TAAAAGCTATTTTGC-AA-TAAAATAATATTAT-TTAATAATATTTCAAAA-TTAATAAGTAAAT
* ** * *
9748131 GATTTAAAAGATAAAATCTATTTGCAAAAAAAGTTTGAAT-GATCATAACTATTTGAATAATTAT
383 GATTTAAAAGAT-AAATCTATTTACAAAAAAAGTTCAAATAG-TCATAACTATTCGAATAATGAT
* * *
9748195 GTATTTCAAATAATTAAGACTTTTTGTTTTGTTACAGAATAATTATTTCTGTTCATACATACTTA
446 ATATTTCAAATAATTAAGACATTTTGTTTTATTACAGAATAATTATTTCTGTTCATACATACTTA
* * *
9748260 TTCAAAATAAAATTATACTAATTTAT
511 TTCAAAATAAAATAAAACTAATTTAC
* * * * *
9748286 TAATATTTCAAAAATT-ATGAGGAAAAAGATTTAAAAGATAAGTCTGTTTACTAAATTATTCAAA
1 TAATATTTCAAAAATTAAT-AAGAAAAAGATTTAAAAGATAAATCTATTTACCAAAATATTCAAA
* ** * *
9748350 GAGTCATGACTATTTGAATTACTATCTATTTTAAATAATTAAGATATTTTATTTTGTCATAAAAC
65 GAATCATGACTATTT-AAACAATATCTATTTCAAATAATTAAGATATTTTATTTTGTCATAAAAC
* * * *
9748415 AATTATTTTTGCTCATAAAAGCTTATTTAAAATAAAATAATATTAATTTATTAGTA-TTCCAAAA
129 AATTATTTCTACTCATAAAAGCTTATATAAAATAAAATAATATTAATTTATTAATAGTT-CAAAA
* * * * * *
9748479 ATTCGTAAGTAAAAGATGTAAAAGATAAGTATGCTAATT-GAATAAGTTTAAATTGTTATAACTA
193 ATTAGTAACTAAAAGATATAAAAGATAA--AT-CTAATTCGAATAAGTTTAAATAGTTATGATTA
* * * * ** *
9748543 CTTAAACAATTATTTATTTCAAATAATTAAGATATTTTATTTTGTCATAGAACAATTACTTCTGT
255 TTTAAACAATTATCTATTTCAAATAATTATGACATTTT-TTTTGTCATAGAACAATTGTTTCTAT
*
9748608 TCATAAAAGCATATTTTGCAAT-AAATAATATTATTTAATTAATATCTCAAAAATTAATAAGTAA
319 TCATAAAAGC-TATTTTGCAATAAAATAATATTATTTAA-TAATATTTC-AAAATTAATAAGTAA
9748672 A
381 A
9748673 ATATTTTATT
Statistics
Matches: 770, Mismatches: 131, Indels: 51
0.81 0.14 0.05
Matches are distributed among these distances:
537 63 0.08
538 71 0.09
539 7 0.01
540 77 0.10
541 120 0.16
542 189 0.25
543 224 0.29
544 6 0.01
545 7 0.01
546 6 0.01
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (536 bp):
TAATATTTCAAAAATTAATAAGAAAAAGATTTAAAAGATAAATCTATTTACCAAAATATTCAAAG
AATCATGACTATTTAAACAATATCTATTTCAAATAATTAAGATATTTTATTTTGTCATAAAACAA
TTATTTCTACTCATAAAAGCTTATATAAAATAAAATAATATTAATTTATTAATAGTTCAAAAATT
AGTAACTAAAAGATATAAAAGATAAATCTAATTCGAATAAGTTTAAATAGTTATGATTATTTAAA
CAATTATCTATTTCAAATAATTATGACATTTTTTTTGTCATAGAACAATTGTTTCTATTCATAAA
AGCTATTTTGCAATAAAATAATATTATTTAATAATATTTCAAAATTAATAAGTAAATGATTTAAA
AGATAAATCTATTTACAAAAAAAGTTCAAATAGTCATAACTATTCGAATAATGATATATTTCAAA
TAATTAAGACATTTTGTTTTATTACAGAATAATTATTTCTGTTCATACATACTTATTCAAAATAA
AATAAAACTAATTTAC
Found at i:9749155 original size:180 final size:180
Alignment explanation
Indices: 9748707--9750525 Score: 1324
Period size: 181 Copynumber: 10.2 Consensus size: 180
9748697 TACTATTCAC
* * * * * * *
9748707 ACAAAACAAAATG-CATAATTATTTGAAATATATAATTGTTCAAAAAGTTATAACCATTTGAATT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* * * * * * *
9748771 TGTTCCG-TAAATAAATTTATCTTTTAAAT-TATATATTTATTAATTTTTAAAATATTATTAAAA
66 TGTT-CGATAAATAGATTTATCTTTTAAATCT-TTTACTTATTAATTTATGAAATATTAATAAAT
* * * * **
9748834 TAATATTATTTTACTT-TAAATAAACTTGTATAAATAGAAATAATTGTTCTACA
129 TAATATTATTTTA-TTCTGAATAAACTTGTATGAATA-AAAAAATTGTTTTATG
* * * * * * * * * *
9748887 ACAAAATAAAAAGTTATAATTATTTGAAATATATAATTGTTCAAATAATTATGACAATTTGAACT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* * * * * * * * *
9748952 TGTTCGATAAATAAACTTATCTTTTATATGTTTTCCTAAATAATTTACGAAATATTAATAATTTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTA
* * * * * *
9749017 AAATTATTTTATTCTGAGTAAACTTGTATAAACAAAAAAATTATTTTATA
131 ATATTATTTTATTCTGAATAAACTTGTATGAATAAAAAAATTGTTTTATG
* * **
9749067 ACAAAATAAAATGTTATAATTATTTAAAATAGGTAATTATTCAAATAGTCATAACTATTTAAATT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* * *
9749132 TATTCAATAAATAGATATATCTTTTAAATCTTTTACTTATTAATTTTAT-AAATATTAATAAATT
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAA-TTTATGAAATATTAATAAATT
* * * * *
9749196 AACATTTATATTATCCTGAATAAATTTGTATGAATAAAAATAATTGTTTTAAG
130 AATA-TTATTTTATTCTGAATAAACTTGTATGAATAAAAA-AATTGTTTTATG
* * * * * *
9749249 -CAAAACAAATTGTCATAATTATTTGAAGT--AT-A--A---AACT-GT--TGACTATTTGAACT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT-AAAT
* * **
9749302 TT-TTCCATAAATAGATTTATATTTTAAATCTTTTACTTATTAATTCTA--AAATATTAGCAAAT
65 TTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATT-TATGAAATATTAATAAAT
* * *
9749364 TAATATTATTTTATTTTGAATAAA-TATGAATGAATAAAAATAATTATTTTATG
129 TAATATTATTTTATTCTGAATAAACT-TGTATGAATAAAAA-AATTGTTTTATG
* * * * * * *
9749417 ATAAAACAAAATATCATAATTATTTGAAATAAATAATTATTTAATTAATCATTACTATTTAAATT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* *
9749482 TGTTCGATAAATAGATTTATCATTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTA
* * * *
9749547 ATATTATCTTATTC-GAAATAAGCTTGCT-TGAACAGAAACAATTGTTTTATG
131 ATATTATTTTATTCTG-AATAAACTTG-TATGAATA-AAAAAATTGTTTTATG
* * * * * * * *
9749598 ACAAAATAAAAAGTCATAATTATTTGAAAGAAATAATTGTTGAAATAGTTATAATTATTTGAACT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* * * * ** * *
9749663 TATTTGGTAAATAGATTTATCATTTAAATAATTTACTTATTTATTTTTGAAATATTAATAAATTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTA
*** * * * *
9749728 ATATTATTTTATGTAAAAATAAGCTTTTTTGAATAAAAAAATTATTTTATG
131 ATATTATTTTAT-TCTGAATAAACTTGTATGAATAAAAAAATTGTTTTATG
* * * * * * * *
9749779 ACAAAATAAAA-GATCATAATTATTAGAGATAAATAATTGTTTAAATAATTATAATTATTTAAAC
1 ACAAAATAAAATG-TCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAAT
* * * *
9749843 TTGTTTGGTAAATAGATTAATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATT
65 TTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATT
* * ** * * *
9749908 AATATTATTTTATTTTGAATAAGCTTACATAAACATAAACAATTGTTTTATG
130 AATATTATTTTATTCTGAATAAACTTGTATGAATA-AAAAAATTGTTTTATG
* * * * *
9749960 ATAAAATATATTGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAATTATATAAATT
1 ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
* * * * * * *
9750025 TGTTCGGTAAACAAATTTATCTTTTAAATATTTGACTTATTAGTTTTTGAAATA-T--T-AA-TA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTA
* ** ** ** * * *
9750085 ATATTA-TCT-TTCCAAATATGCTTCCACGAATACAAACAATTATTTTATG
131 ATATTATTTTATTCTGAATAAACTTGTATGAATA-AAAAAATTGTTTTATG
* * * * * *
9750134 ACAAAACAAACAGGT-ATAATTATTTGAAACAGATAATTATTTC-AATAGTCAAAACTATTTGAA
1 ACAAAATAAA-ATGTCATAATTATTTGAAATAAATAATTA-TTCAAATAGTCATAACTATTTAAA
* * *
9750197 CTTATTC-AGTAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTAT-AAATATTAATAG
64 TTTGTTCGA-TAAATAGATTTATCTTTTAAATCTTTTACTTATTAA-TTTATGAAATATTAATA-
* * * ** * ** * * * *
9750260 AATTGATATTATCTCATTCCAAATGAGGTTGTATGAGCAT-GAATAATTATTTTAGG
126 AATTAATATTATTTTATTCTGAATAAACTTGTATGA--ATAAAAAAATTGTTTTATG
* * * * * * * * * * *
9750316 ATAAAACAAACA-ATCGTAATTATTTGAAACAAATAATTGTTCTAAT-GCACATAATTAGTTGAA
1 ACAAAATAAA-ATGTCATAATTATTTGAAATAAATAATTATTCAAATAG-TCATAACTATTTAAA
* * * * * * * *
9750379 TTTATTCGGTAAATAAATTTATCTTTTAAATCATTTACTCATTATTTTTTGAAATAAATAAATAA
64 TTTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAAT--ATTAATAA
* * ** ***
9750444 ATAAATATTATTTTATTCT-AAAAAAGCTTAAATGAATAGAACTGATTGTTTTATG
127 ATTAATATTATTTTATTCTGAATAAA-CTTGTATGAATA-AAAAAATTGTTTTATG
*
9750499 ACAAAATATAA-GTCATAATTATTTGAA
1 ACAAAATAAAATGTCATAATTATTTGAA
9750526 TTTGTTAGTA
Statistics
Matches: 1329, Mismatches: 251, Indels: 116
0.78 0.15 0.07
Matches are distributed among these distances:
167 1 0.00
168 40 0.03
169 43 0.03
170 48 0.04
171 7 0.01
172 3 0.00
173 3 0.00
174 118 0.09
175 12 0.01
176 9 0.01
177 6 0.00
178 3 0.00
179 9 0.01
180 203 0.15
181 613 0.46
182 164 0.12
183 39 0.03
184 8 0.01
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (180 bp):
ACAAAATAAAATGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAATT
TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTATGAAATATTAATAAATTA
ATATTATTTTATTCTGAATAAACTTGTATGAATAAAAAAATTGTTTTATG
Found at i:9749840 original size:362 final size:361
Alignment explanation
Indices: 9748707--9752421 Score: 1781
Period size: 362 Copynumber: 10.3 Consensus size: 361
9748697 TACTATTCAC
* * * * * *
9748707 ACAAAAC-AAA-ATGCATAATTATTTGAAATATATAATTGTTCAAA-AAGTTATAACCATTTGAA
1 ACAAAACAAAAGAT-CATAATTATTTGAAATAAATAATTATTTAAATAA-TCATAACTATTTAAA
* * * * * *
9748769 TTTGTTCCG-TAAATAAATTTATCTTTTAAAT-TATATATTTATTAATTTTTAAAATATTATTAA
64 CTTGTT-CGATAAATAGATTTATCTTTTAAATCT-TTTACTTATTAATTTTTGAAATATTAATAA
* * * * * * * * ** *
9748832 AATAATATTATTTTACTT-TAAATAAACTTG-TATAAATAGAAATAATTGTTCTACAACAAAATA
127 ATTAATATTATCTTA-TTCGAAATAAGCTTGCT-TGAACAGAAACAATTGTTTTATGATAAAATA
* * * * * * ** * * *
9748895 AAAAGTTATAATTATTTGAAATATATAATTGTTCAAATAATTATGACAATTTGAACTTGTTCGAT
190 AAAAGTCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGT
* * * * * * * ** * *
9748960 AAATAAACTTATCTTTTATATGTTTTCCTAAATAATTTACGAAATATTAATAATTTAAAATTATT
255 AAATAAATTTATCTTTTAAAT-ATTTACTTATTAGTTTTTGAAATATTAATAAATTAATATTATT
*** * * ** *
9749025 TTATTCTGAGTAAACTTGTAT-AA-ACAAAAAAATTATTTTATA
319 TTATTAAAAATAAGCTTAAATGAATAC-AAAAAATTATTTTATG
* * * ** * * *
9749067 ACAAAATAAAATG-TTATAATTATTTAAAATAGGTAATTATTCAAATAGTCATAACTATTTAAAT
1 ACAAAACAAAA-GATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAAC
* * *
9749131 TTATTCAATAAATAGATATATCTTTTAAATCTTTTACTTATTAATTTTAT-AAATATTAATAAAT
65 TTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAAAT
* * * ** * * * * * *
9749195 TAACATTTATATTATCCTG-AATAAATTTG-TATGAATAAAAATAATTGTTTTAAG-CAAAACAA
129 TAATA-TTATCTTATTC-GAAATAAGCTTGCT-TGAACAGAAACAATTGTTTTATGATAAAATAA
** ** * * * **
9749257 ATTGTCATAATTATTTG-AA-GTATAA------AACT-GT--TGACTATTTGAACTTT-TTCCAT
191 AAAGTCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAA-TTTATTCGGT
* * * * * * **
9749310 AAATAGATTTATATTTTAAATCTTTTACTTATTA-ATTCTAAAATATTAGCAAATTAATATTATT
255 AAATAAATTTATCTTTTAAAT-ATTTACTTATTAGTTTTTGAAATATTAATAAATTAATATTATT
*** * *
9749374 TTATTTTGAATAA-ATATGAATGAATA-AAAATAATTATTTTATG
319 TTATTAAAAATAAGCT-TAAATGAATACAAAA-AATTATTTTATG
* * * * *
9749417 ATAAAACAAAATATCATAATTATTTGAAATAAATAATTATTTAATTAATCATTACTATTTAAATT
1 ACAAAACAAAAGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAACT
*
9749482 TGTTCGATAAATAGATTTATCATTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
*
9749547 ATATTATCTTATTCGAAATAAGCTTGCTTGAACAGAAACAATTGTTTTATGACAAAATAAAAAGT
131 ATATTATCTTATTCGAAATAAGCTTGCTTGAACAGAAACAATTGTTTTATGATAAAATAAAAAGT
* * * * * *
9749612 CATAATTATTTGAAAGAAATAATTGTTGAAATAGTTATAATTATTTGAACTTATTTGGTAAATAG
196 CATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAAATAA
*
9749677 ATTTATCATTTAAATAATTTACTTATTTA-TTTTTGAAATATTAATAAATTAATATTATTTTATG
261 ATTTATCTTTTAAAT-ATTTACTTA-TTAGTTTTTGAAATATTAATAAATTAATATTATTTTAT-
***
9749741 TAAAAATAAGCTTTTTTGAATA-AAAAAATTATTTTATG
323 TAAAAATAAGCTTAAATGAATACAAAAAATTATTTTATG
* * * * * *
9749779 ACAAAATAAAAGATCATAATTATTAGAGATAAATAATTGTTTAAATAATTATAATTATTTAAACT
1 ACAAAACAAAAGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAACT
* * *
9749844 TGTTTGGTAAATAGATTAATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
* * * * * * * **
9749909 ATATTATTTTATTTTG-AATAAGCTTACATAAACATAAACAATTGTTTTATGATAAAATATATTG
131 ATATTATCTTA-TTCGAAATAAGCTTGCTTGAACAGAAACAATTGTTTTATGATAAAATAAAAAG
* * * * * *
9749973 TCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAATTATATAAATTTGTTCGGTAAACA
195 TCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAAATA
*
9750038 AATTTATCTTTTAAATATTTGACTTATTAGTTTTTGAAATA-T--T-AA-TAATATTA-TCT-TT
260 AATTTATCTTTTAAATATTT-ACTTATTAGTTTTTGAAATATTAATAAATTAATATTATTTTATT
** * ** * *
9750096 CCAAATATGCTTCCACGAATACAAACAATTATTTTATG
324 AAAAATAAGCTTAAATGAATACAAAAAATTATTTTATG
* * * * * * *
9750134 ACAAAACAAACAGGT-ATAATTATTTGAAACAGATAATTATTTCAATAGTCAAAACTATTTGAAC
1 ACAAAACAAA-AGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAAC
* *
9750198 TTATTC-AGTAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTAT-AAATATTAATAGA
65 TTGTTCGA-TAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATA-A
* * * * * * * * * *
9750261 ATTGATATTATCTCATTCCAAATGAGGTTG-TATGAGCATG-AATAATTATTTTAGGATAAAACA
127 ATTAATATTATCTTATTCGAAATAAGCTTGCT-TGAACA-GAAACAATTGTTTTATGATAAAATA
* * * *
9750324 AACAA-TCGTAATTATTTGAAACAAATAATTGTTCTAAT-GCACATAATTAGTTGAATTTATTCG
190 AA-AAGTCATAATTATTTGAAACAAATAATTGTTCAAATAG-TCATAATTATTTGAATTTATTCG
* * * *
9750387 GTAAATAAATTTATCTTTTAAATCATTTACTCATTATTTTTTGAAATAAATAAATAAATAAATAT
253 GTAAATAAATTTATCTTTTAAAT-ATTTACTTATTAGTTTTTGAAAT--ATTAATAAATTAATAT
* * *** *
9750452 TATTTTATTCTAAAA-AAGCTTAAATGAATAGAACTGATTGTTTTATG
315 TATTTTATT-AAAAATAAGCTTAAATGAATACAAAAAATTATTTTATG
* * * * *
9750499 ACAAAATATAAG-TCATAATTATTTGAATTTGTTAGTAAACAAATATATCTTTTAAATATTTTAT
1 ACAAAACAAAAGATCATAATTATTTGAA------A-TAAA-TAAT-TA---TTTAAATA-ATCAT
* * * * * *
9750563 GTATTAATTTTATAA-ATATT-AATAAATTA-ATATTATCTTATTCTGACTAAACTATTATGAAC
53 -AACT-A-TTTA-AACTTGTTCGATAAA-TAGAT-TTATC-T-TT-T-A--AATCT-TT-T--AC
** * * * * * * ** * **
9750625 --AACAATTATTTTAGGATA-AAACAAA-CAATCA-TA-ATTATTTAAAAT-AGATAATTATTCG
102 TTATTAATT-TTTGA-AATATTAATAAATTAAT-ATTATCTTATTCGAAATAAGCT--TGCTT-G
* * * * *** * * * * * *
9750683 AATA-ATTATAACTT-TTTGGACTTG-TTCTATTAACA-T-AT-TTATATTTTAAATCTTTTATT
161 AACAGA-AACAA-TTGTTT-TA--TGATAAAATAAAAAGTCATAAT-TATTTGAAA-C---AAAT
* * * * * *
9750742 AATTTTTGGACAAA-A---ATAATTATTT---TATAAT---AAAACAAAATGTTATAATTATTAA
216 AATTGTT---CAAATAGTCATAATTATTTGAATTTATTCGGTAAA-TAAAT-TTAT-CTT-TT-A
** * * ** * * **
9750797 AATAAATAATTATTCAATTATTT-ATAACTATTTGAACTTGTTCTATTAACA-GATTTATATTTT
273 AATATTTACTTATT-AGTT-TTTGA-AA-TA-TT-AA-----TAAATTAATATTATTT-TATTAA
*** *** *
9750860 AAAT-TTTTTATTAATTTTTGGACAAAAATAATTATTTTATA
326 AAATAAGCTTA--AATGAAT--AC-AAAA-AATTATTTTATG
* * * * * * * * *
9750901 ATAAAATAAAATG-TTATAATTATTTAAAATAAATAATTATTCAATTATTTATAACTATTTGAAC
1 ACAAAACAAAA-GATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAAC
* * * *
9750965 TTGTTTGATAAACAGATTTATCTTTTAAATCTTTTATTTATTAATTTAAT-AAATATTAATAAAT
65 TTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTT-TTGAAATATTAATAAAT
* ** * *
9751029 TAATATTATCTTATTTCG-AATAAG-AT--TT---CATGAATTAATTATTTTATGACAAAATAAA
129 TAATATTATCTTA-TTCGAAATAAGCTTGCTTGAACA-GAAACAATTGTTTTATGATAAAATAAA
* * * * * * **
9751087 AGGTCATGATTATTTGAAATAAATAATTGTTCAATTAGTCATAACTATTTGAACTTATTTAGTAA
192 AAGTCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAA
* * * *
9751152 ATAAATATAT-TTTAAAATCTTTCACTTATTAATTTTATG-AATATTAATAAATTAATATTATTT
257 ATAAATTTATCTTTTAAATATTT-ACTTATTAGTTTT-TGAAATATTAATAAATTAATATTATTT
* * * * ** * *
9751215 TATTTAGAATAAACATGTATGAAT-GAAATAATTATTTTATG
320 TATTAAAAATAAGCTTAAATGAATACAAAAAATTATTTTATG
* * * * * * * * *
9751256 ATAAAACCAAAGGTCATAATTATTTCAAATAAATAATTGTTCAATTATTCATAACTATTTAAATT
1 ACAAAACAAAAGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAACT
* **
9751321 TGTTCGGTGTATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
* * * * *
9751386 ATATTATTTTATTCGGACTAAGCTTGCATGAA-A-AAA-AATTTGTTTTATGATAAAATAAAGAG
131 ATATTATCTTATTCGAAATAAGCTTGCTTGAACAGAAACAA-TTGTTTTATGATAAAATAAAAAG
** * * * * * *
9751448 TCATAATTATTTGAAA-TTATAATTATTCAAATAGTCATAACTATTTGGATTTGTTTGATAAATA
195 TCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAAATA
* * * *
9751512 GATTTATCTTTTAAATATTTTACTTATTA-ATTTTCATTATATTAATAAATTAATATTATTTTAT
260 AATTTATCTTTTAAATA-TTTACTTATTAGTTTTTGA-AATATTAATAAATTAATATTATTTTAT
** ** *
9751576 TTCAAATAAGCTTGTATG-A-ACAATAACAATTGTTTTATG
323 TAAAAATAAGCTTAAATGAATACAA-AA-AATTATTTTATG
* * * *
9751615 ACAAACCAAAATG-TCATAATTATTTGAAATAGATAA-TAGTTTAAATAGTAATAACTATTTAAA
1 ACAAAACAAAA-GATCATAATTATTTGAAATAAATAATTA-TTTAAATAATCATAACTATTTAAA
* * * * * * * * *
9751678 CTTGTTCAATAAACAAATTTGTCTTTTAGATATTTTACTTTTTAATTTTTGAAATGTTAGTAAAT
64 CTTGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAAT
* * * *
9751743 TAATATTATCTTATTCTAAATAAACTTGCATGAA-AGGAAACAATTATTTTATGATAAAATAAAA
129 TAATATTATCTTATTCGAAATAAGCTTGCTTGAACA-GAAACAATTGTTTTATGATAAAATAAAA
* * * * * * * * **
9751807 AGTCATAATTATTTGAAATAGATAATTATTGAAATAGTTATAACTATTT-ATACTTGTTTAGTAA
193 AGTCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGA-ATTTATTCGGTAA
* * * * * *
9751871 ATAGATTTGTATTTTAAATCTTTTACTTATTTA-TTTTTAAAATATTAATAAATTAATAATATTT
257 ATAAATTTATCTTTTAAAT-ATTTACTTA-TTAGTTTTTGAAATATTAATAAATTAATATTATTT
* ** ** * *
9751935 TATGT--AACT--TTTTTTA-GCATA-AAATAATTATTTTATG
320 TAT-TAAAAATAAGCTTAAATGAATACAAAAAATTATTTTATG
* * * * * *
9751972 ACAAAATAAAAG-TCATAATTATTTG-AAT-AA-CA--GTTCAAATAATTATAACTATTTGAACT
1 ACAAAACAAAAGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAACT
* * * * * *
9752031 TATTCGATAAACAAATTAATTTTTTAAATCTTTTACTTATTGATTTTATG-AATATTAATAAATT
66 TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAAATT
* * * * *
9752095 AATATTATCTTTTTTTG-AATAAGCTT-ATGTGAAAAGAAACAATTGTTTTATGACAAAATAAAA
130 AATATTATC-TTATTCGAAATAAGCTTGCT-TGAACAGAAACAATTGTTTTATGATAAAATAAAA
* * * * * * * *
9752158 AATCATAATTATTTGAAATAAATAATTTTTTAAATAATCATAACTATTTAAATTTATTTGGT-AA
193 AGTCATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAAA
* * * * *
9752222 TAAATTTATCTTTAAAATATTTCACTTATTAATTTTATG-AATATTAATAAATTGATATTATCTC
258 TAAATTTATCTTTTAAATATTT-ACTTATTAGTTTT-TGAAATATTAATAAATTAATATTATTTT
** * * *
9752286 ATTCCGAAA-AAGGTTATATGAAT-CAAAAATAGTTGTTTTATG
321 ATT-AAAAATAAGCTTAAATGAATACAAAAA-A-TTATTTTATG
* * * * * * * * *
9752328 ATAAAACAAACTG-TTATAATTATTAGAAACAAATAATTATTCT-AATAGTCATAATTAGTTGAA
1 ACAAAACAAA-AGATCATAATTATTTGAAATAAATAATTATT-TAAATAATCATAACTATTTAAA
* * *
9752391 TTTATTCTG-TAAATAGACTTATCTTTTAAAT
64 CTTGTTC-GATAAATAGATTTATCTTTTAAAT
9752422 ATGTTAGCAC
Statistics
Matches: 2587, Mismatches: 542, Indels: 450
0.72 0.15 0.13
Matches are distributed among these distances:
348 2 0.00
349 85 0.03
350 240 0.09
351 176 0.07
352 15 0.01
353 8 0.00
354 29 0.01
355 260 0.10
356 172 0.07
357 96 0.04
358 104 0.04
359 162 0.06
360 18 0.01
361 225 0.09
362 470 0.18
363 38 0.01
364 18 0.01
365 33 0.01
366 8 0.00
367 3 0.00
368 2 0.00
369 12 0.00
370 22 0.01
371 13 0.01
372 10 0.00
373 21 0.01
374 5 0.00
375 4 0.00
376 12 0.00
377 6 0.00
378 11 0.00
379 19 0.01
380 23 0.01
381 11 0.00
382 2 0.00
383 2 0.00
384 2 0.00
385 8 0.00
386 19 0.01
387 25 0.01
388 44 0.02
389 23 0.01
390 23 0.01
391 22 0.01
392 11 0.00
394 2 0.00
395 6 0.00
396 15 0.01
397 11 0.00
398 4 0.00
400 1 0.00
401 2 0.00
402 18 0.01
403 14 0.01
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (361 bp):
ACAAAACAAAAGATCATAATTATTTGAAATAAATAATTATTTAAATAATCATAACTATTTAAACT
TGTTCGATAAATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTA
ATATTATCTTATTCGAAATAAGCTTGCTTGAACAGAAACAATTGTTTTATGATAAAATAAAAAGT
CATAATTATTTGAAACAAATAATTGTTCAAATAGTCATAATTATTTGAATTTATTCGGTAAATAA
ATTTATCTTTTAAATATTTACTTATTAGTTTTTGAAATATTAATAAATTAATATTATTTTATTAA
AAATAAGCTTAAATGAATACAAAAAATTATTTTATG
Found at i:9750393 original size:182 final size:180
Alignment explanation
Indices: 9749309--9752421 Score: 1111
Period size: 181 Copynumber: 17.1 Consensus size: 180
9749299 ACTTTTTCCA
* * * * **
9749309 TAAATAGATTTATATTTTAAATCTTTTACTTATTAA-TTCTAAAATATTAGCAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* *** * * * * * * *
9749373 TTTATTTTGAATAA-ATATGAATGAATAAAAATAATTATTTTATGATAAAACAAAATATCATAAT
66 CTTATTCCAAATAAGCT-TGTATGAACATAAACAATTATTTTATGACAAAACAAAAGATCATAAT
* * * * *
9749437 TATTTGAAATAAATAATTATTTAATTA-ATCATTACTATTTAAATTTGTTCGA
130 TATTTGAAATAAATAATTATTTAA-TAGA-CATAATTATTTAAACTTATTCGG
* *
9749489 TAAATAGATTTATCATTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* * * *
9749554 CTTATTCGAAATAAGCTTGCT-TGAACAGAAACAATTGTTTTATGACAAAATAAAA-AGTCATAA
66 CTTATTCCAAATAAGCTTG-TATGAACATAAACAATTATTTTATGACAAAACAAAAGA-TCATAA
* * * ** * *
9749617 TTATTTGAAAGAAATAATTGTTGAAATAGTTATAATTATTTGAACTTATTTGG
129 TTATTTGAAATAAATAATTATT-TAATAGACATAATTATTTAAACTTATTCGG
* * ** *
9749670 TAAATAGATTTATCATTTAAATAATTTACTTATTTATTTTTGAAATATTAATAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* ** * * * * *
9749735 TTTATGTAAAAATAAGCTTTTTTGAATA-AAAAAATTATTTTATGACAAAATAAAAGATCATAAT
66 CTTAT-TCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACAAAAGATCATAAT
* * * * * *
9749799 TATTAGAGATAAATAATTGTTTAAATA-ATTATAATTATTTAAACTTGTTTGG
130 TATTTGAAATAAATAATTATTT-AATAGA-CATAATTATTTAAACTTATTCGG
* *
9749851 TAAATAGATTAATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* *** ** * * * * **
9749916 TTTATTTTGAATAAGCTTACATAAACATAAACAATTGTTTTATGATAAAATATATTG-TCATAAT
66 CTTATTCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACA-AAAGATCATAAT
* * * * *
9749980 TATTTGAAATAAATAATTATTCAAATAGTCATAATTATATAAATTTGTTCGG
130 TATTTGAAATAAATAATTATT-TAATAGACATAATTATTTAAACTTATTCGG
* * * *
9750032 TAAACAAATTTATCTTTTAAATATTTGACTTATTAGTTTTTGAAATA-T--T-AA-TAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* ** * * * *
9750092 C-T-TTCCAAATATGCTTCCACGAATACAAACAATTATTTTATGACAAAACAAACAGGT-ATAAT
66 CTTATTCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACAAA-AGATCATAAT
* * * * * * *
9750154 TATTTGAAACAGATAATTATTTCAATAGTCAAAACTATTTGAACTTATTCAG
130 TATTTGAAATAAATAATTATTT-AATAGACATAATTATTTAAACTTATTCGG
*
9750206 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTAT-AAATATTAATAGAATTGATATT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATA-AATTAATATT
* * * * * * * * *
9750270 ATCTCATTCCAAATGAGGTTGTATGAGCATGAATAATTATTTTAGGATAAAACAAACA-ATCGTA
64 ATCTTATTCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACAAA-AGATCATA
* * * * *
9750334 ATTATTTGAAACAAATAATTGTTCTAAT-GCACATAATTAGTTGAATTTATTCGG
128 ATTATTTGAAATAAATAATTATT-TAATAG-ACATAATTATTTAAACTTATTCGG
* * * * *
9750388 TAAATAAATTTATCTTTTAAATCATTTACTCATTATTTTTTGAAATAAATAAATAAATAAATATT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAAT--ATTAATAAATTAATATT
* * * ** * * * *
9750453 ATTTTATTCTAAAAAAGCTTAAATG-A-ATAGAACTGATTGTTTTATGACAAAATATAAG-TCAT
64 ATCTTATTCCAAATAAGCTTGTATGAACATA-AAC-AATTATTTTATGACAAAACAAAAGATCAT
** * * * * **
9750515 AATTATTTG-AAT---TTGTTA-GTAA-ACAAATATATCT-TTTAAA-TATTTTATG
127 AATTATTTGAAATAAATAATTATTTAATAGACATA-AT-TATTTAAACT-TATTCGG
* * * ** * * *
9750564 T-ATTAATTTTATAAATATTAATAAAT-TAATA-TTATCTTA-TTCTGACTAAACTATT-ATGAA
1 TAAATAAATTTAT--CT-TT--TAAATCTTTTACTTAT-TAATTTTTG---AAA-TATTAATAAA
* * * ** * * * * * * *
9750624 -CAACAATTATTTTAGGATAAAACAAACAATCATAAT-TATTTAAAATAGATAATTA--TT-CGA
56 TTAA-TATTATCTT---AT--TCCAAATAAGC-T--TGTA-TGAACATAAACAATTATTTTATGA
** * ** ** * * * * * *
9750684 -ATAATTATAACTTTTTGGACTTGTTCT--ATTAACATATTTATATT-TTA-A-AT-CTT-TTAT
111 CA-AAACAAAAGATCAT--AATTATT-TGAAATAA-ATAATTAT-TTAATAGACATAATTATT-T
* *
9750741 TAA-TT-TTTGG
169 AAACTTATTCGG
* * * *** *
9750751 -ACAA-AAATAATTATTTTATAATAAAACAAAATGTTATAATTATTAAAATAAAT-AATTATTCA
1 TA-AATAAAT--TTATCTT-T--TAAATC----T-TT-TACTTATT--AATTTTTGAAATATT-A
** * * * * * *** **
9750813 ATTATTTATAACTATTTGAACTTGTTCTATTAA-CAGATT-TAT-ATTTTAAATTTTTTATTAAT
51 A-TAAAT-TAA-TA-TT-ATCTTATTCCA--AATAAGCTTGTATGAACATAAA----CAATT-AT
** * * ** * ** *
9750875 TTT-TGGACAAAA-ATAATTATTTTATAATAAAATAAAATGTTATAATTATTTAAAATAAATAAT
104 TTTAT-GACAAAACA-AA--AGATCATAATTATTTGAAAT-AAATAATTATTT--AAT--A-GA-
* *
9750938 TATTCAATTATTTATAAC-TATTTGAACTTGT
158 CA-T-AATTATTTA-AACTTA-TT---C--GG
** *** * ** * * *
9750969 TTGATAAACAGATTTATCTTTTAAATCTTTTATTTATTAATTTAAT-AAATATTAATAAATTAAT
1 TAAATAAATTTATCT-T-TTAAAT--CTTTTACTTATTAATTT-TTGAAATATTAATAAATTAAT
* * * * * *
9751033 ATTATCTTATTTCGAATAAGATT-TCATG-A-AT---TAATTATTTTATGACAAAATAAAAGGTC
61 ATTATCTTATTCCAAATAAGCTTGT-ATGAACATAAACAATTATTTTATGACAAAACAAAAGATC
* * * * * * **
9751092 ATGATTATTTGAAATAAATAATTGTTCAATTAGTCATAACTATTTGAACTTATTTAG
125 ATAATTATTTGAAATAAATAATTATTTAA-TAGACATAATTATTTAAACTTATTCGG
* * *
9751149 TAAATAAATATAT-TTTAAAATCTTTCACTTATTAATTTTATG-AATATTAATAAATTAATATTA
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAAATTAATATTA
* * * * * * * *
9751212 TTTTATT-TAGAATAAACATGTATG-A-ATGAAATAATTATTTTATGATAAAACCAAAGGTCATA
65 TCTTATTCCA-AATAAGCTTGTATGAACAT-AAACAATTATTTTATGACAAAACAAAAGATCATA
* * * ** * * *
9751274 ATTATTTCAAATAAATAATTGTTCAATTATTCATAACTATTTAAATTTGTTCGG
128 ATTATTTGAAATAAATAATTATTTAA-TAGACATAATTATTTAAACTTATTCGG
** *
9751328 TGTATAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* ** * * * * *
9751393 TTTATTCGGACTAAGCTTGCATGAA-A-AAA-AATTTGTTTTATGATAAAA-TAAAGAGTCATAA
66 CTTATTCCAAATAAGCTTGTATGAACATAAACAA-TTATTTTATGACAAAACAAAAGA-TCATAA
* * * * ** * * * *
9751454 TTATTTGAAAT-TATAATTATTCAAATAGTCATAACTATTTGGATTTGTTTGA
129 TTATTTGAAATAAATAATTATT-TAATAGACATAATTATTTAAACTTATTCGG
* * * *
9751506 TAAATAGATTTATCTTTTAAATATTTTACTTATTAA-TTTTCATTATATTAATAAATTAATATTA
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAATAAATTAATATTA
* * * *
9751570 TTTTATTTCAAATAAGCTTGTATGAACA-ATAACAATTGTTTTATGACAAACCAAAATG-TCATA
65 TCTTATTCCAAATAAGCTTGTATGAACATA-AACAATTATTTTATGACAAAACAAAA-GATCATA
* * * **
9751633 ATTATTTGAAATAGATAA-TAGTTTAAATAGTA-ATAACTATTTAAACTTGTTCAA
128 ATTATTTGAAATAAATAATTA-TTT-AATAG-ACATAATTATTTAAACTTATTCGG
* * * * * * *
9751687 TAAACAAATTTGTCTTTTAGATATTTTACTTTTTAATTTTTGAAATGTTAGTAAATTAATATTAT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* * * * * *
9751752 CTTATTCTAAATAAACTTGCATGAA-AGGAAACAATTATTTTATGATAAAATAAAA-AGTCATAA
66 CTTATTCCAAATAAGCTTGTATGAACA-TAAACAATTATTTTATGACAAAACAAAAGA-TCATAA
* * ** * * * **
9751815 TTATTTGAAATAGATAATTATTGAAATAGTTATAACTATTTATACTTGTTTAG
129 TTATTTGAAATAAATAATTATT-TAATAGACATAATTATTTAAACTTATTCGG
* * * * *
9751868 TAAATAGATTTGTATTTTAAATCTTTTACTTATTTATTTTTAAAATATTAATAAATTAATA--AT
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
* ** * * * * * *
9751931 ATT-TT--ATGTAA-CTTTTTTTAGCATAAAATAATTATTTTATGACAAAATAAAAG-TCATAAT
66 CTTATTCCAAATAAGCTTGTATGAACAT-AAACAATTATTTTATGACAAAACAAAAGATCATAAT
* * * * * *
9751991 TATTTG-AAT-AACAGTTCA---AATA-ATTATAACTATTTGAACTTATTCGA
130 TATTTGAAATAAATAATT-ATTTAATAGA-CATAATTATTTAAACTTATTCGG
* * * *
9752038 TAAACAAATTAATTTTTTAAATCTTTTACTTATTGATTTTATG-AATATTAATAAATTAATATTA
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAAATTAATATTA
* *** * * * * * * *
9752102 TCTTTTTTTGAATAAGCTTATGTGAAAAGAAACAATTGTTTTATGACAAAATAAAAAATCATAAT
65 TCTTATTCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACAAAAGATCATAAT
* * * *
9752167 TATTTGAAATAAATAATTTTTTAAATA-ATCATAACTATTTAAATTTATTTGG
130 TATTTGAAATAAATAATTATTT-AATAGA-CATAATTATTTAAACTTATTCGG
* * * *
9752219 T-AATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATG-AATATTAATAAATTGATATTA
1 TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT-TGAAATATTAATAAATTAATATTA
* * * * * * * * * *
9752282 TCTCATTCCGAAA-AAGGTTATATGAATCAAAAATAGTTGTTTTATGATAAAACAAACTG-TTAT
65 TCTTATTCC-AAATAAGCTTGTATGAA-CATAAACAATTATTTTATGACAAAACAAA-AGATCAT
* * * * * * *
9752345 AATTATTAGAAACAAATAATTATTCTAATAGTCATAATTAGTTGAATTTATTCTG
127 AATTATTTGAAATAAATAATTATT-TAATAGACATAATTATTTAAACTTATTCGG
* *
9752400 TAAATAGACTTATCTTTTAAAT
1 TAAATAAATTTATCTTTTAAAT
9752422 ATGTTAGCAC
Statistics
Matches: 2231, Mismatches: 494, Indels: 414
0.71 0.16 0.13
Matches are distributed among these distances:
170 73 0.03
171 1 0.00
172 4 0.00
173 7 0.00
174 128 0.06
175 119 0.05
176 74 0.03
177 15 0.01
178 133 0.06
179 145 0.06
180 243 0.11
181 758 0.34
182 191 0.09
183 43 0.02
184 21 0.01
185 10 0.00
186 11 0.00
187 27 0.01
188 9 0.00
189 12 0.01
190 5 0.00
191 9 0.00
192 10 0.00
193 12 0.01
194 22 0.01
195 7 0.00
196 18 0.01
197 15 0.01
198 11 0.00
199 13 0.01
200 5 0.00
201 1 0.00
203 3 0.00
204 7 0.00
205 9 0.00
206 2 0.00
207 3 0.00
208 4 0.00
209 3 0.00
210 8 0.00
211 13 0.01
212 7 0.00
213 4 0.00
214 1 0.00
216 3 0.00
217 4 0.00
218 5 0.00
219 3 0.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (180 bp):
TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTAT
CTTATTCCAAATAAGCTTGTATGAACATAAACAATTATTTTATGACAAAACAAAAGATCATAATT
ATTTGAAATAAATAATTATTTAATAGACATAATTATTTAAACTTATTCGG
Found at i:9750845 original size:130 final size:131
Alignment explanation
Indices: 9750628--9751002 Score: 578
Period size: 130 Copynumber: 2.9 Consensus size: 131
9750618 TATGAACAAC
** * * * *
9750628 AATTATTTTAGGATAAAACAAACA-ATCATAATTATTTAAAATAGATAATTATTCGAA-TAATTA
1 AATTATTTTATAATAAAACAAA-ATGTTATAATTATTTAAAATAAATAATTATTC-AATTATTTA
* * *
9750691 TAACTTTTTGGACTTGTTCTATTAACATATTTATATTTTAAATCTTTTATTAATTTTTGGACAAA
64 TAACTATTTGAACTTGTTCTATTAACAGATTTATATTTTAAATCTTTTATTAATTTTTGGACAAA
9750756 AAT
129 AAT
9750759 AATTATTTTATAATAAAACAAAATGTTATAATTA-TTAAAATAAATAATTATTCAATTATTTATA
1 AATTATTTTATAATAAAACAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTATTTATA
*
9750823 ACTATTTGAACTTGTTCTATTAACAGATTTATATTTTAAATTTTTTATTAATTTTTGGACAAAAA
66 ACTATTTGAACTTGTTCTATTAACAGATTTATATTTTAAATCTTTTATTAATTTTTGGACAAAAA
9750888 T
131 T
*
9750889 AATTATTTTATAATAAAATAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTATTTATA
1 AATTATTTTATAATAAAACAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTATTTATA
* *
9750954 ACTATTTGAACTTGTT-TGATAAACAGATTTATCTTTTAAATCTTTTATT
66 ACTATTTGAACTTGTTCT-ATTAACAGATTTATATTTTAAATCTTTTATT
9751003 TATTAATTTA
Statistics
Matches: 226, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
129 2 0.01
130 122 0.54
131 102 0.45
ACGTcount: A:0.42, C:0.06, G:0.05, T:0.46
Consensus pattern (131 bp):
AATTATTTTATAATAAAACAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTATTTATA
ACTATTTGAACTTGTTCTATTAACAGATTTATATTTTAAATCTTTTATTAATTTTTGGACAAAAA
T
Found at i:9751725 original size:181 final size:179
Alignment explanation
Indices: 9750883--9752421 Score: 1276
Period size: 181 Copynumber: 8.6 Consensus size: 179
9750873 ATTTTTGGAC
* * * * *
9750883 AAAAATAATTATTTTATAATAAAATAAAATGTTATAATTATTTAAAATAAATAATTA-TTCAATT
1 AAAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAA-TAGTTCAAAT
* * * * * *
9750947 ATTTATAACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTATTTATTAATTT
65 AGTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTT
* * * * *
9751012 AATAAATATTAATAAATTAATATTATCTTATTTCGAATAAGATT-TCATG-
130 TATGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGT-ATGA
* * * * *
9751061 --AATTAATTATTTTATGACAAAATAAAAGGTCATGATTATTTGAAATAAATAATTGTTCAATTA
1 AAAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAATA
* * * * *
9751124 GTCATAACTATTTGAACTTATTT-AGTAAATAAATATAT-TTTAAAATCTTTCACTTATTAATTT
66 GTCATAACTATTTAAACTTGTTTGA-TAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTT
* *
9751187 TATGAATATTAATAAATTAATATTATTTTATTT-AGAATAAACATGTATGA
130 TATGAATATTAATAAATTAATATTATTTTATTTCA-AATAAGCTTGTATGA
* * ** * * * *
9751237 ATGAAATAATTATTTTATGATAAAACCAAAGGTCATAATTATTTCAAATAAATAATTGTTCAATT
1 A-AAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAAT
* * * * ** *
9751302 ATTCATAACTATTTAAATTTGTTCGGTGTATAGATTTATCTTTTAAATCTTTTACTTATTAATTT
65 AGTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTT
* * *
9751367 T-TGAAATATTAATAAATTAATATTATTTTA-TTCGGACTAAGCTTGCATGA
130 TATG-AATATTAATAAATTAATATTATTTTATTTC-AAATAAGCTTGTATGA
* * *
9751417 AAAAA-AATTTGTTTTATGATAAAATAAAGA-GTCATAATTATTTGAAAT-TATAATTA-TTCAA
1 AAAAATAA-TTATTTTATGACAAAATAAA-ATGTCATAATTATTTGAAATAAATAA-TAGTTCAA
** * * *
9751478 ATAGTCATAACTATTTGGATTTGTTTGATAAATAGATTTATCTTTTAAATATTTTACTTATTAAT
63 ATAGTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAAT
*
9751543 TTTCAT-TATATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGA
128 TTT-ATGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGA
* * ** * *
9751595 ACAATAACAATTGTTTTATGACAAACCAAAATGTCATAATTATTTGAAATAGATAATAGTTTAAA
1 A-AA-AATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAA
* ** * * * * *
9751660 TAGTAATAACTATTTAAACTTGTTCAATAAACAAATTTGTCTTTTAGATATTTTACTTTTTAATT
64 TAGTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATT
* * * * *
9751725 TT-TGAAATGTTAGTAAATTAATATTATCTTA-TTCTAAATAAACTTGCATGA
129 TTATG-AATATTAATAAATTAATATTATTTTATTTC-AAATAAGCTTGTATGA
* * * * *
9751776 AAGGAAACAATTATTTTATGATAAAATAAAAAGTCATAATTATTTGAAATAGATAATTA-TTGAA
1 AA--AAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAA-TAGTTCAA
* * * * * *
9751840 ATAGTTATAACTATTTATACTTGTTT-AGTAAATAGATTTGTATTTTAAATCTTTTACTTATTTA
63 ATAGTCATAACTATTTAAACTTGTTTGA-TAAATAAATTTATCTTTTAAATCTTTTACTTATTAA
* * * * ** *
9751904 TTTT-TAAAATATTAATAAATTAATAATATTTTATGT-AACT--TTTTTTA-GCA
127 TTTTAT-GAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATG-A
* *
9751954 TAAAATAATTATTTTATGACAAAATAAAA-GTCATAATTATTTG-----AATAACAGTTCAAATA
1 AAAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAATA
* * * * * * * * *
9752013 ATTATAACTATTTGAACTTATTCGATAAACAAATTAATTTTTTAAATCTTTTACTTATTGATTTT
66 GTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT
** * *
9752078 ATGAATATTAATAAATTAATATTATCTTT-TTTTGAATAAGCTTATGTGAA
131 ATGAATATTAATAAATTAATATTAT-TTTATTTCAAATAAGCTTGTATG-A
* * ** ** *
9752128 AAGAAACAATTGTTTTATGACAAAATAAAAAATCATAATTATTTGAAATAAATAATTTTTTAAAT
1 AA-AAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAAT
* * * * * * *
9752193 AATCATAACTATTTAAATTTATTTGGT-AATAAATTTATCTTTAAAATATTTCACTTATTAATTT
65 AGTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTT
* * * * * *
9752257 TATGAATATTAATAAATTGATATTATCTCATTCCGAAA-AAGGTTATATGAA
130 TATGAATATTAATAAATTAATATTATTTTATTTC-AAATAAGCTTGTATG-A
* * * * * * * * *
9752308 TCAAAAATAGTTGTTTTATGATAAAACAAACTGTTATAATTATTAGAAACAAATAATTA-TTCTA
1 --AAAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAA-TAGTTCAA
* * * * * * *
9752372 ATAGTCATAATTAGTTGAATTTATTCTG-TAAATAGACTTATCTTTTAAAT
63 ATAGTCATAACTATTTAAACTTGTT-TGATAAATAAATTTATCTTTTAAAT
9752422 ATGTTAGCAC
Statistics
Matches: 1113, Mismatches: 191, Indels: 110
0.79 0.14 0.08
Matches are distributed among these distances:
169 1 0.00
170 86 0.08
171 7 0.01
173 3 0.00
174 3 0.00
175 102 0.09
176 122 0.11
177 1 0.00
178 114 0.10
179 134 0.12
180 179 0.16
181 335 0.30
182 26 0.02
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.44
Consensus pattern (179 bp):
AAAAATAATTATTTTATGACAAAATAAAATGTCATAATTATTTGAAATAAATAATAGTTCAAATA
GTCATAACTATTTAAACTTGTTTGATAAATAAATTTATCTTTTAAATCTTTTACTTATTAATTTT
ATGAATATTAATAAATTAATATTATTTTATTTCAAATAAGCTTGTATGA
Found at i:9751840 original size:16 final size:17
Alignment explanation
Indices: 9751811--9751843 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
9751801 ATAAAAAGTC
9751811 ATAATTATTTGAAATAG
1 ATAATTATTTGAAATAG
9751828 ATAATTA-TTGAAATAG
1 ATAATTATTTGAAATAG
9751844 TTATAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
ATAATTATTTGAAATAG
Found at i:9752095 original size:351 final size:356
Alignment explanation
Indices: 9750884--9752282 Score: 1444
Period size: 351 Copynumber: 3.9 Consensus size: 356
9750874 TTTTTGGACA
* * * * * * *
9750884 AAAATAATTATTTTATAATAAAATAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTAT
1 AAAATAATTATTTTATGACAAAACAAAATGTCATAATTATTTAAAATAAATAA-TGTTCAAATAA
* * * * *
9750949 TTATAACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTATTTATTAATTTAA
65 TTATAACTATTTAAACTTGTTCGATAAACAAATTTATCTTTTAAATCTTTTACTTATTAATTT-T
* **
9751014 T-AAATATTAATAAATTAATATTATCTTATT-TCGAATAAGA-TTTCAT----GAATTAATTATT
129 TGAAATATTAATAAATTAATATTATCTTATTCT-GAATAA-ACTTGCATGAAAGAAACAATTATT
* * * *
9751072 TTATGACAAAATAAAAGGTCATGATTATTTGAAATAAATAATTGTTCAATTAGTCATAACTATTT
192 TTATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT
* *
9751137 GAACTTATTTAGTAAATA-A-ATATATTTTAAAATCTTTCACTTATTAATTTTATGAATATTAAT
257 -AACTTATTTAGTAAATAGATTTATATTTT-AAATATTTCACTTATTAATTTTATGAATATTAAT
*
9751200 AAATTAATATTATTTTATTTAGAATAAACATGTATGAAT
320 AAATTAATATTATTTTATTTA-AAT-AACTTGTATGAAT
* * * * * *
9751239 GAAATAATTATTTTATGATAAAACCAAAGGTCATAATTATTTCAAATAAATAATTGTTC-AATTA
1 AAAATAATTATTTTATGACAAAACAAAATGTCATAATTATTTAAAATAAATAA-TGTTCAAATAA
* * ** * *
9751303 TTCATAACTATTTAAATTTGTTCGGTGTATAGATTTATCTTTTAAATCTTTTACTTATTAATTTT
65 TT-ATAACTATTTAAACTTGTTCGATAAACAAATTTATCTTTTAAATCTTTTACTTATTAATTTT
* * * * *
9751368 TGAAATATTAATAAATTAATATTATTTTATTCGGACTAAGCTTGCATGAAA-AAA-AATTTGTTT
129 TGAAATATTAATAAATTAATATTATCTTATTCTGAATAAACTTGCATGAAAGAAACAA-TTATTT
* * *
9751431 TATGATAAAATAAAGAGTCATAATTATTTGAAAT-TATAATTATTCAAATAGTCATAACTATTTG
193 TATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT-
* * * * * *
9751495 GATTTGTTT-GATAAATAGATTTATCTTTTAAATATTTTACTTATTAATTTTCAT-TATATTAAT
257 AACTTATTTAG-TAAATAGATTTATATTTTAAATATTTCACTTATTAATTTT-ATGAATATTAAT
*
9751558 AAATTAATATTATTTTATTTCAAATAAGCTTGTATGAAC
320 AAATTAATATTATTTTATTT-AAATAA-CTTGTATGAAT
* * * * * *
9751597 AATAACAATTGTTTTATGACAAACCAAAATGTCATAATTATTTGAAATAGATAATAGTTTAAATA
1 AA-AATAATTATTTTATGACAAAACAAAATGTCATAATTATTTAAAATAAATAAT-GTTCAAATA
* * * * * * *
9751662 GTAATAACTATTTAAACTTGTTCAATAAACAAATTTGTCTTTTAGATATTTTACTTTTTAATTTT
64 ATTATAACTATTTAAACTTGTTCGATAAACAAATTTATCTTTTAAATCTTTTACTTATTAATTTT
* * *
9751727 TGAAATGTTAGTAAATTAATATTATCTTATTCTAAATAAACTTGCATGAAAGGAAACAATTATTT
129 TGAAATATTAATAAATTAATATTATCTTATTCTGAATAAACTTGCATGAAA-GAAACAATTATTT
* * * *
9751792 TATGATAAAATAAAAAGTCATAATTATTTGAAATAGATAATTATTGAAATAGTTATAACTATTTA
193 TATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTA
* * * * * *
9751857 TACTTGTTTAGTAAATAGATTTGTATTTTAAATCTTTTACTTATTTATTTT-TAAAATATTAATA
258 -ACTTATTTAGTAAATAGATTTATATTTTAAATATTTCACTTATTAATTTTAT-GAATATTAATA
* * * ** * *
9751921 AATTAATAATATTTTATGTAACT-TTTTTTA-GCAT
321 AATTAATATTATTTTATTTAAATAACTTGTATGAAT
* * *
9751955 AAAATAATTATTTTATGACAAAATAAAA-GTCATAATTATTT-GAAT-AA-CA-GTTCAAATAAT
1 AAAATAATTATTTTATGACAAAACAAAATGTCATAATTATTTAAAATAAATAATGTTCAAATAAT
* * * * *
9752015 TATAACTATTTGAACTTATTCGATAAACAAATTAATTTTTTAAATCTTTTACTTATTGATTTTAT
66 TATAACTATTTAAACTTGTTCGATAAACAAATTTATCTTTTAAATCTTTTACTTATTAATTTT-T
* * * *** *
9752080 G-AATATTAATAAATTAATATTATCTTTTTTTGAATAAGCTTATGTGAAAAGAAACAATTGTTTT
130 GAAATATTAATAAATTAATATTATCTTATTCTGAATAAACTTGCATG-AAAGAAACAATTATTTT
* * * *
9752144 ATGACAAAATAAAAAATCATAATTATTTGAAATAAATAATTTTTTAAATAATCATAACTATTTAA
194 ATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT-A
* * * * *
9752209 ATTTATTTGGT-AATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATGAATATTAATAAA
258 ACTTATTTAGTAAATAGATTTATATTTTAAATATTTCACTTATTAATTTTATGAATATTAATAAA
*
9752273 TTGATATTAT
323 TTAATATTAT
9752283 CTCATTCCGA
Statistics
Matches: 869, Mismatches: 145, Indels: 65
0.81 0.13 0.06
Matches are distributed among these distances:
350 51 0.06
351 175 0.20
352 6 0.01
353 1 0.00
354 6 0.01
355 145 0.17
356 14 0.02
357 65 0.07
358 104 0.12
359 155 0.18
360 5 0.01
361 44 0.05
362 97 0.11
363 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (356 bp):
AAAATAATTATTTTATGACAAAACAAAATGTCATAATTATTTAAAATAAATAATGTTCAAATAAT
TATAACTATTTAAACTTGTTCGATAAACAAATTTATCTTTTAAATCTTTTACTTATTAATTTTTG
AAATATTAATAAATTAATATTATCTTATTCTGAATAAACTTGCATGAAAGAAACAATTATTTTAT
GACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAACT
TATTTAGTAAATAGATTTATATTTTAAATATTTCACTTATTAATTTTATGAATATTAATAAATTA
ATATTATTTTATTTAAATAACTTGTATGAAT
Found at i:9752192 original size:16 final size:17
Alignment explanation
Indices: 9752162--9752194 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9752152 ATAAAAAATC
9752162 ATAATTATTTGAAATAA
1 ATAATTATTTGAAATAA
*
9752179 ATAATT-TTTTAAATAA
1 ATAATTATTTGAAATAA
9752195 TCATAACTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
ATAATTATTTGAAATAA
Found at i:9752207 original size:18 final size:18
Alignment explanation
Indices: 9752153--9752210 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
9752143 TATGACAAAA
*
9752153 TAAAAAATCATAATTATT
1 TAAATAATCATAATTATT
*
9752171 TGAAATAA--ATAATTTTT
1 T-AAATAATCATAATTATT
*
9752188 TAAATAATCATAACTATT
1 TAAATAATCATAATTATT
9752206 TAAAT
1 TAAAT
9752211 TTATTTGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 6 0.18
17 9 0.27
18 13 0.39
19 5 0.15
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAATAATCATAATTATT
Found at i:9752327 original size:532 final size:528
Alignment explanation
Indices: 9750883--9752421 Score: 1623
Period size: 532 Copynumber: 2.9 Consensus size: 528
9750873 ATTTTTGGAC
* * * *
9750883 AAAAATAATTATTTTATAATAAAATAAAATGTTATAATTATTTAAAATAAATAATTATTCAATTA
1 AAAAATAATTATTTTATGATAAAATAAAA-GTCATAATTATTT-GAAT--A-AA-TATTCAAATA
* * *
9750948 TTTATAACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTATTTATTAATTTA
60 ATTATAACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTACTTATTAATTTT
* ** * ** *
9751013 ATAAATATTAATAAATTAATATTATCTTATTTCGAATAAG---ATT-TCATGAATTAATTATTTT
125 AT-AATATTAATAAATTAATATTATCTTTTTTCGAATAAGCTTATTGAAAAGAAACAATTGTTTT
* * * * *
9751074 ATGACAAAATAAAAGGTCATGATTATTTGAAATAAATAATTGTTCAATTAGTCATAACTATTTGA
189 ATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAA
* *
9751139 ACTTATTTAGTAAATAAATATAT-TTTAAAATCTTTCACTTATTAATTTTATGAATATTAATAAA
254 ACTTATTTAGTAAATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATGAATATTAATAAA
* * * *
9751203 TTAATATTATTTTATTTAGAATAAACATGTATGAAT-GAAATAATTATTTTATGATAAAACCAAA
319 TTAATATTATCTTA-TTCGAA-AAACTTGTATGAATAGAAATAATTATTTTATGATAAAACAAAA
* * * * * * **
9751267 GGTCATAATTATTTCAAATAAATAATTGTTCAATTATTCATAACTATTTAAATTTGTTCGGTGTA
382 AGTCATAATTATTTGAAATAAATAATTATTCAAATATTCATAACTATTTAAACTTGTTCAGTAAA
* * *
9751332 TAGATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTA
447 TAGATTTATATTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAATAATATTTTA
*
9751397 TTCGGACTAAGCTTGCAT
512 TTC-AACTAAGCTTGCAT
* *
9751415 GAAAAAAAATTTGTTTTATGATAAAATAAAGAGTCATAATTATTTGAAATTATAATTATTCAAAT
1 -AAAAATAA-TTATTTTATGATAAAATAAA-AGTCATAATTATTTG-AA-TA-AA-TATTCAAAT
* * * * * *
9751480 AGTCATAACTATTTGGATTTGTTTGATAAATAGATTTATCTTTTAAATATTTTACTTATTAATTT
59 AATTATAACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTACTTATTAATTT
* * * *
9751545 TCATTATATTAATAAATTAATATTAT-TTTATTTCAAATAAGCTTGTATGAACAA-TAACAATTG
124 T-ATAATATTAATAAATTAATATTATCTTT-TTTCGAATAAGCTTAT-TGAA-AAGAAACAATTG
** * * * *
9751608 TTTTATGACAAACCAAAATGTCATAATTATTTGAAATAGATAATAGTTTAAATAGTAATAACTAT
185 TTTTATGACAAAATAAAAAGTCATAATTATTTGAAATAAATAATTGTTTAAATAGTCATAACTAT
* * * * * * * * * *
9751673 TTAAACTTGTTCAATAAACAAATTTGTCTTTTAGATATTTTACTTTTTAATTTT-TGAAATGTTA
250 TTAAACTTATTTAGTAAATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATG-AATATTA
* * * *
9751737 GTAAATTAATATTATCTTATTCTAAATAAACTTGCATGAA-AGGAAACAATTATTTTATGATAAA
314 ATAAATTAATATTATCTTATTC-GAA-AAACTTGTATGAATA-GAAATAATTATTTTATGATAAA
* * * *
9751801 ATAAAAAGTCATAATTATTTGAAATAGATAATTATTGAAATAGTT-ATAACTATTTATACTTGTT
376 ACAAAAAGTCATAATTATTTGAAATAAATAATTATTCAAATA-TTCATAACTATTTAAACTTGTT
* * *
9751865 TAGTAAATAGATTTGTATTTTAAATCTTTTACTTATTTATTTTTAAAATATTAATAAATTAATAA
440 CAGTAAATAGATTTATATTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAATAA
****
9751930 TATTTTATGT-AACTTTTTTTAGCAT
505 TATTTTAT-TCAACTAAGCTT-GCAT
* *
9751955 -AAAATAATTATTTTATGACAAAATAAAAGTCATAATTATTTGAATAACA-GTTCAAATAATTAT
1 AAAAATAATTATTTTATGATAAAATAAAAGTCATAATTATTTGAATAA-ATATTCAAATAATTAT
* * * * * *
9752018 AACTATTTGAACTTATTCGATAAACAAATTAATTTTTTAAATCTTTTACTTATTGATTTTATGAA
65 AACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTACTTATTAATTTTAT-AA
*
9752083 TATTAATAAATTAATATTATCTTTTTTTGAATAAGCTTATGTGAAAAGAAACAATTGTTTTATGA
129 TATTAATAAATTAATATTATCTTTTTTCGAATAAGCTTAT-TGAAAAGAAACAATTGTTTTATGA
* * * *
9752148 CAAAATAAAAAATCATAATTATTTGAAATAAATAATTTTTTAAATAATCATAACTATTTAAATTT
193 CAAAATAAAAAGTCATAATTATTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAAACTT
* *
9752213 ATTTGGT-AATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATGAATATTAATAAATTGA
258 ATTTAGTAAATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATGAATATTAATAAATTAA
* * * * * * **
9752277 TATTATCTCATTCCGAAAAAGGTTATATGAATCAAAAATAGTTGTTTTATGATAAAACAAACTGT
323 TATTATCTTATT-CGAAAAA-CTTGTATGAAT-AGAAATAATTATTTTATGATAAAACAAAAAGT
* * * * * * * * * * *
9752342 TATAATTATTAGAAACAAATAATTATTCTAATAGTCATAATTAGTTGAATTTATTCTGTAAATAG
385 CATAATTATTTGAAATAAATAATTATTCAAATATTCATAACTATTTAAACTTGTTCAGTAAATAG
* *
9752407 ACTTATCTTTTAAAT
450 ATTTATATTTTAAAT
9752422 ATGTTAGCAC
Statistics
Matches: 823, Mismatches: 153, Indels: 61
0.79 0.15 0.06
Matches are distributed among these distances:
530 3 0.00
531 70 0.09
532 262 0.32
533 114 0.14
534 37 0.04
535 4 0.00
536 16 0.02
537 19 0.02
538 91 0.11
539 64 0.08
540 140 0.17
541 3 0.00
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.44
Consensus pattern (528 bp):
AAAAATAATTATTTTATGATAAAATAAAAGTCATAATTATTTGAATAAATATTCAAATAATTATA
ACTATTTGAACTTGTTTGATAAACAGATTTATCTTTTAAATCTTTTACTTATTAATTTTATAATA
TTAATAAATTAATATTATCTTTTTTCGAATAAGCTTATTGAAAAGAAACAATTGTTTTATGACAA
AATAAAAAGTCATAATTATTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAAACTTATT
TAGTAAATAAATTTATCTTTAAAATATTTCACTTATTAATTTTATGAATATTAATAAATTAATAT
TATCTTATTCGAAAAACTTGTATGAATAGAAATAATTATTTTATGATAAAACAAAAAGTCATAAT
TATTTGAAATAAATAATTATTCAAATATTCATAACTATTTAAACTTGTTCAGTAAATAGATTTAT
ATTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAATAATATTTTATTCAACTAA
GCTTGCAT
Found at i:9754307 original size:16 final size:17
Alignment explanation
Indices: 9754286--9754318 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
9754276 TAATGATTTG
9754286 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
9754302 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
9754319 TGAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:9754479 original size:17 final size:16
Alignment explanation
Indices: 9754454--9754502 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 16
9754444 AACAAAAGAT
*
9754454 AATACTTATTTGAAATA
1 AATAATTATTT-AAATA
9754471 AATAATTATTTAAATA
1 AATAATTATTTAAATA
*
9754487 GTCATAATTATTTAAA
1 --AATAATTATTTAAA
9754503 GTTGTTCGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 10 0.36
18 13 0.46
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (16 bp):
AATAATTATTTAAATA
Found at i:9754650 original size:181 final size:180
Alignment explanation
Indices: 9753989--9755750 Score: 1659
Period size: 181 Copynumber: 9.7 Consensus size: 180
9753979 AAGGATAAAA
* * * * * * * * *
9753989 AAATCATTTGCTTATTATTTTTCAAAAAATAAATAAATTAATGTTATTTTATTATGAAAAAACTT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATT-TGAATAAGCTT
* * * * *
9754054 GCATGAACA-AAACCAATTGTTTTATTACAAAA-AAAATGTCATAATTATTTGAAATAGATAATA
65 GCATGAATAGAAA-CAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATT
* * ** * *
9754117 ATTCAAATAATCATAACTATTTGAACTTGTTTAGTAAACATATTTATTTTTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTA-TCTTTT
* * * ** *
9754170 AAATCTTTTACTTATGA-ATTT-ATGAATATTAATAAATTAATATTATCTTATTCCAATTAAACT
1 AAATCTTTTACTTATTACTTTTCA-AAATATTAATAAATTAATATTATCTTATTTGAA-TAAGCT
* * * * * * * *
9754233 TGCATGAACAGGAACAATTATTTTATTACAAAACGAAAGGTAATAATGATTTGAAATAGATAATT
64 TGCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATT
* * *** *
9754298 ATTCAAATAGTCATAATTATTTGAATTTATTCCACAAACAAATTTATCTTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* * *
9754350 AAATCTTTTACTTATTACTTTGT--GAATATTAATAAATTATTATTATCTTATTCCGAATAAGCT
1 AAATCTTTTACTTATTACTTT-TCAAAATATTAATAAATTAATATTATCTTATT-TGAATAAGCT
* * * * * * *
9754413 TGCATGTATAGAAATAATTATTTTATGATAAAACAAAAGATAATACTTATTTGAAATAAATAATT
64 TGCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATT
* * * * * *
9754478 ATTTAAATAGTCATAATTATTTAAAGTTGTTCGGTAAACATATTTATCTTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* *
9754530 AAATATTTTACTTATTACTTTTCAAAATTTTAATAAATTAATATTATCTTATTCTGAATAAGCTT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATT-TGAATAAGCTT
* * * *
9754595 GAATGAATAGAAATAATTGTTTTATGATAAAATAAAAGGTCAT-ATATCTTTGAAATAGATAATT
65 GCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAAT-TATTTGAAATAGATAATT
* * * ** *
9754659 GTTAAAATAGTCATAACTATTTAAACTTATTATGTAAATAGATTTATCTTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* ** * * *
9754711 AAATGTTTTACTTATTACATTTT-GGAATATTACTAAATTAATATTATCTTATTTCAAATAAGTT
1 AAATCTTTTACTTATTAC-TTTTCAAAATATTAATAAATTAATATTATCTTATTT-GAATAAGCT
* * * * * *
9754775 TCCATGAATAGAAACAATTATTTTATGATAACACAAAAGGTCATAATAATTTAAAATAAATAATT
64 TGCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATT
* * * * *
9754840 ATTCAAATAGTCATAACTATTTGCACTTGTTCAGTAAACAAAATTAAT-TTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAAC-AGATTTATCTTTT
* * *
9754892 AAATCTATTACTTATTAATTTTC-AAATATTAATAAATTAATATTAT-TATATTTCGAATAAACT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCT-TATTT-GAATAAGCT
** ** * * * * * *
9754955 CACACAAATAAAAACAATTGTTTTATAACAAAATAAAAGGTAATAATTATTTGAAACAGATAATT
64 TGCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATT
* * * * *
9755020 ATCCTAATAGTTATAACTATTTGAACTTATTCGGTAAATAGATTTATTTTTT
129 ATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* * ** * *
9755072 GAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTGTTTAGAATAAGCTT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATTT-GAATAAGCTT
* * * * *
9755137 GTATGAATAGAAACAATTGTTTTATAATCAAACAAAAGGTTATAATTATTTGAAATGGATAATTA
65 GCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATTA
* * * * *
9755202 TTCAAATAGTCATAACTATTCGAACTTATTCGATAAATATACTTATCTTTT
130 TTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* ** *
9755253 AAATCTTTTACTTATTATTTTTTGAAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATTT-GAATAAGCTT
* * * * * * * * *
9755318 TCATG-ATACAAACTATTGTTTTATGACAAAACAAATGGACATAATTATTTAAAACAAATAATTA
65 GCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATTA
* * * *
9755382 TTTC-AATAGTCATAATTATTTGAACTTGTTCGATAAATAGATTTATCTTTT
130 -TTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
* * * * * * *
9755433 AAATATTTTACTTTTTAATTTTTGAGAA-ATTAATAAATTAATATTATTTTATTTTGAAAAAGCT
1 AAATCTTTTACTTATT-ACTTTTCAAAATATTAATAAATTAATATTATCTTA-TTTGAATAAGCT
* * * * * * *
9755497 TGAATGAATAGAAATAATTATTTTATGATAAAATAAAAATGTCATAATTATTTAAAATAAATAAT
64 TGCATGAATAGAAACAATTGTTTTATGATAAAA-CAAAAGGTCATAATTATTTGAAATAGATAAT
* * ** *
9755562 TGTTCAAATAGTCATAGCTGTATTGTTTGAACTTATTCAATAATA-A-ATTTATCTTTC
128 TATTCAAATAGTCATAAC--TA---TTTGAACTTATTCGGTAA-ACAGATTTATCTTTT
* * * * *
9755619 AAATCTTTTGCTTATTACTTTTCAGAATATTAGTAAATTAATATTATGTTATTCTGAATATG-TT
1 AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATT-TGAATAAGCTT
* * * * * * *
9755683 GTATGAACAGAAATAATTGTTTTATGATAAAAGAAAAGGTCCTAATTATTTAAAATTGATAATTA
65 GCATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATTA
9755748 TTC
130 TTC
9755751 TGTAAACAAA
Statistics
Matches: 1318, Mismatches: 230, Indels: 63
0.82 0.14 0.04
Matches are distributed among these distances:
179 11 0.01
180 513 0.39
181 601 0.46
182 51 0.04
184 32 0.02
185 42 0.03
186 50 0.04
187 17 0.01
188 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (180 bp):
AAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATTATCTTATTTGAATAAGCTTG
CATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAATTATTTGAAATAGATAATTAT
TCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAGATTTATCTTTT
Found at i:9754669 original size:361 final size:361
Alignment explanation
Indices: 9754020--9755750 Score: 1771
Period size: 361 Copynumber: 4.8 Consensus size: 361
9754010 TCAAAAAATA
* * * * * * * *
9754020 AATAAATTAATGTTATTTTATTAT-GAAAAAACTTGCATGAACA-AAACCAATTGTTTTATTACA
1 AATAAATTAATATTATCTTATT-TCGAATAAGCTTGCATGAATAGAAA-CAATTATTTTATGATA
* * *
9754083 AAA-AAAATG-TCATAATTATTTGAAATAGATAATAATTCAAATAATCATAACTATTTGAACTTG
64 AAACAAAA-GATCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTG
* * * * *
9754146 TTTAGTAAACATATTTATTTTTTTAAATCTTTTACTTATGA-ATTT-ATGAATATTAATAAATTA
128 TTCAGTAAACATATTTA-TCTTTTAAATCTTTTACTTATTACTTTTCA-AAATATTAATAAATTA
* * * * * * * * *
9754209 ATATTATCTTATTC-CAATTAAACTTGCATGAACAGGAACAATTATTTTATTACAAAACGAAAGG
191 ATATTATCTTATTCTGAA-TAAGCTTGAATGAATAGAAATAATTGTTTTATGACAAAACAAAAGG
* * * * * * * *
9754273 TAATAATGATTTGAAATAGATAATTATTCAAATAGTCATAATTATTTGAATTTATTCCACAAACA
255 TCATAATTATTTGAAACAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGATAAATA
* * *
9754338 AATTTATCTTTTAAATCTTTTACTTATTACTTTGTGAATATT
320 GATTTATCTTTTAAATCTTTTACTTATTAATTTTTGAATATT
* * * *
9754380 AATAAATTATTATTATCTTATTCCGAATAAGCTTGCATGTATAGAAATAATTATTTTATGATAAA
1 AATAAATTAATATTATCTTATTTCGAATAAGCTTGCATGAATAGAAACAATTATTTTATGATAAA
* * * * * *
9754445 ACAAAAGATAATACTTATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTAAAGTTGTTC
66 ACAAAAGATCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
* * *
9754510 GGTAAACATATTTATCTTTTAAATATTTTACTTATTACTTTTCAAAATTTTAATAAATTAATATT
131 AGTAAACATATTTATCTTTTAAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATT
* *
9754575 ATCTTATTCTGAATAAGCTTGAATGAATAGAAATAATTGTTTTATGATAAAATAAAAGGTCAT-A
196 ATCTTATTCTGAATAAGCTTGAATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTCATAA
* * * * * *
9754639 TATCTTTGAAATAGATAATTGTTAAAATAGTCATAACTATTTAAACTTATTATG-TAAATAGATT
261 T-TATTTGAAACAGATAATTATTCAAATAGTCATAACTATTTGAACTTATT-CGATAAATAGATT
* *
9754703 TATCTTTTAAATGTTTTACTTATTACATTTTGGAATATT
324 TATCTTTTAAATCTTTTACTTATTA-ATTTTTGAATATT
* * * * *
9754742 ACTAAATTAATATTATCTTATTTCAAATAAGTTTCCATGAATAGAAACAATTATTTTATGATAAC
1 AATAAATTAATATTATCTTATTTCGAATAAGCTTGCATGAATAGAAACAATTATTTTATGATAAA
* * * *
9754807 ACAAAAGGTCATAATAATTTAAAATAAATAATTATTCAAATAGTCATAACTATTTGCACTTGTTC
66 ACAAAAGATCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
* * * *
9754872 AGTAAACAAAATTAAT-TTTTAAATCTATTACTTATTAATTTTC-AAATATTAATAAATTAATAT
131 AGTAAAC-ATATTTATCTTTTAAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATAT
* * ** * * * * *
9754935 TAT-TATATT-TCGAATAAAC-TCACACAAATAAAAACAATTGTTTTATAACAAAATAAAAGGTA
195 TATCT-TATTCT-GAATAAGCTTGA-ATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTC
* * * *
9754997 ATAATTATTTGAAACAGATAATTATCCTAATAGTTATAACTATTTGAACTTATTCGGTAAATAGA
257 ATAATTATTTGAAACAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGATAAATAGA
* *
9755062 TTTATTTTTTGAATCTTTTACTTATTAATTTTTGAAATATT
322 TTTATCTTTTAAATCTTTTACTTATTAATTTTTG-AATATT
* * * * * * *
9755103 AATAAATTAATATTATTTTGTTTAGAATAAGCTTGTATGAATAGAAACAATTGTTTTATAATCAA
1 AATAAATTAATATTATCTTATTTCGAATAAGCTTGCATGAATAGAAACAATTATTTTATGATAAA
* * ** * *
9755168 ACAAAAGGTTATAATTATTTGAAATGGATAATTATTCAAATAGTCATAACTATTCGAACTTATTC
66 ACAAAAGATCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
* * * **
9755233 -GATAAATATACTTATCTTTTAAATCTTTTACTTATTATTTTTTGAAATATTAATAAATTAATAT
131 AG-TAAACATATTTATCTTTTAAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATAT
* ** * * *
9755297 TATCTTATT-TCAAATAAGCTTTCATG-ATACAAACT-ATTGTTTTATGACAAAACAAATGGACA
195 TATCTTATTCT-GAATAAGCTTGAATGAATAGAAA-TAATTGTTTTATGACAAAACAAAAGGTCA
* * * *
9755359 TAATTATTTAAAACAAATAATTATTTC-AATAGTCATAATTATTTGAACTTGTTCGATAAATAGA
258 TAATTATTTGAAACAGATAATTA-TTCAAATAGTCATAACTATTTGAACTTATTCGATAAATAGA
* * *
9755423 TTTATCTTTTAAATATTTTACTTTTTAATTTTTGAGAAATT
322 TTTATCTTTTAAATCTTTTACTTATTAATTTTTGA-ATATT
* * * * *
9755464 AATAAATTAATATTATTTTATTTTGAAAAAGCTTGAATGAATAGAAATAATTATTTTATGATAAA
1 AATAAATTAATATTATCTTATTTCGAATAAGCTTGCATGAATAGAAACAATTATTTTATGATAAA
* * * *
9755529 ATAAAA-ATGTCATAATTATTTAAAATAAATAATTGTTCAAATAGTCATAGCTGTATTGTTTGAA
66 ACAAAAGA--TCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAAC--TA---TTTGAA
* * * * * *
9755593 CTTATTCAATAATA-A-ATTTATCTTTCAAATCTTTTGCTTATTACTTTTCAGAATATTAGTAAA
124 CTTGTTCAGTAA-ACATATTTATCTTTTAAATCTTTTACTTATTACTTTTCAAAATATTAATAAA
* * * * * *
9755656 TTAATATTATGTTATTCTGAATATG-TTGTATGAACAGAAATAATTGTTTTATGATAAAAGAAAA
188 TTAATATTATCTTATTCTGAATAAGCTTGAATGAATAGAAATAATTGTTTTATGACAAAACAAAA
* * **
9755720 GGTCCTAATTATTTAAAATTGATAATTATTC
253 GGTCATAATTATTTGAAACAGATAATTATTC
9755751 TGTAAACAAA
Statistics
Matches: 1136, Mismatches: 198, Indels: 69
0.81 0.14 0.05
Matches are distributed among these distances:
360 90 0.08
361 672 0.59
362 230 0.20
363 8 0.01
364 2 0.00
365 9 0.01
366 107 0.09
367 17 0.01
368 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (361 bp):
AATAAATTAATATTATCTTATTTCGAATAAGCTTGCATGAATAGAAACAATTATTTTATGATAAA
ACAAAAGATCATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGTTC
AGTAAACATATTTATCTTTTAAATCTTTTACTTATTACTTTTCAAAATATTAATAAATTAATATT
ATCTTATTCTGAATAAGCTTGAATGAATAGAAATAATTGTTTTATGACAAAACAAAAGGTCATAA
TTATTTGAAACAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGATAAATAGATTTA
TCTTTTAAATCTTTTACTTATTAATTTTTGAATATT
Found at i:9755007 original size:542 final size:539
Alignment explanation
Indices: 9753989--9756486 Score: 2347
Period size: 542 Copynumber: 4.7 Consensus size: 539
9753979 AAGGATAAAA
* * * * * * * *
9753989 AAATCATTTGCTTATTATTTTTCAAAAAATAAATAAATTAATGTTATTTTATTATGAAAAAACTT
1 AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTT
* * * * * *
9754054 GCATGAACA-AAACCAATTGTTTTATTACAAAA-AAAATGTCATAATTATTTGAAATAGATAATA
65 GTATGAACAGAAA-TAATTGTTTTATGATAAAACAAAAGGTCATAA-TATTTGAAATAGATAATT
* * * * *
9754117 ATTCAAATAATCATAACTATTTGAACTTGTTTAGTAAACATATTTATTTTTTTAAATCTTTTACT
128 ATTCAAATAGTCATAACTATTTGAACTTATTT-GTAAATAGATTTA-TCTTTTAAATCTTTTACT
* * * * * *
9754182 TATGAATTTAT-GAATATTAATAAATTAATATTATCTTATTCCAATTAAACTTGCATGAACAGGA
191 TATTAATTT-TGGAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTGCATGAATAGAA
* * * * * *
9754246 ACAATTATTTTATTACAAAACGAAAGGTAATAATGATTTGAAATAGATAATTATTCAAATAGTCA
255 ACAATTGTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAATAGTCA
* * * * * * * * *
9754311 TAATTATTTGAATTTATTC-CACAAACAAATTTATCTTTTAAATCTTTTACTTATTACTTTGTG-
320 TAACTATTTGAACTTGTTCAGATAAATAAATTTATCTTTTAAATATTTTACTTATTAATTTTTGA
* * * * * * *
9754374 AATATTAATAAATTATTATTATCTTATTCCGAATAAGCTTGCATGTATAGAAATAATTATTTTAT
385 AATATTAATAAATTAATATTATTTTATTTCGAATAAACTTACATGAATAAAAATAATTATTTTAT
* * * * * * *
9754439 GATAAAACAAAAGATAATACTTATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTAAAG
450 GACAAAATAAAAGGTAATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAAC
*
9754504 TTGTTCGGTAAACATATTTATCTTTT
515 TTATTCGGTAAA-ATATTTATCTTTT
* * * *
9754530 AAATATTTTACTTATTACTTTTCAAAATTTTAATAAATTAATATTATCTTATTCTGAATAAGCTT
1 AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTT
* * * * *
9754595 GAATGAATAGAAATAATTGTTTTATGATAAAATAAAAGGTCATATATCTTTGAAATAGATAATTG
65 GTATGAACAGAAATAATTGTTTTATGATAAAACAAAAGGTCATA-ATATTTGAAATAGATAATTA
* * *
9754660 TTAAAATAGTCATAACTATTTAAACTTATTATGTAAATAGATTTATCTTTTAAATGTTTTACTTA
129 TTCAAATAGTCATAACTATTTGAACTTATT-TGTAAATAGATTTATCTTTTAAATCTTTTACTTA
* * *
9754725 TTACATTTTGGAATATTACTAAATTAATATTATCTTATTTCAAATAAGTTTCCATGAATAGAAAC
193 TTA-ATTTTGGAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTGCATGAATAGAAAC
* * * * *
9754790 AATTATTTTATGATAACACAAAAGGTCATAATAATTTAAAATAAATAATTATTCAAATAGTCATA
257 AATTGTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAATAGTCATA
* * * * * *
9754855 ACTATTTGCACTTGTTCAG-TAAACAAAATTAAT-TTTTAAATCTATTACTTATTAA-TTTTCAA
322 ACTATTTGAACTTGTTCAGATAAA-TAAATTTATCTTTTAAATATTTTACTTATTAATTTTTGAA
* * ** * * *
9754917 ATATTAATAAATTAATATTATTATATTTCGAATAAACTCACACAAATAAAAACAATTGTTTTATA
386 ATATTAATAAATTAATATTATTTTATTTCGAATAAACTTACATGAATAAAAATAATTATTTTATG
* * * * * *
9754982 ACAAAATAAAAGGTAATAATTATTTGAAACAGATAATTATCCTAATAGTTATAACTATTTGAACT
451 ACAAAATAAAAGGTAATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACT
* *
9755047 TATTCGGTAAATAGATTTATTTTTT
516 TATTCGGTAAA-ATATTTATCTTTT
* ** *
9755072 GAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTGTTTAGAATAAGCTT
1 AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTT
* * * * * *
9755137 GTATGAATAGAAACAATTGTTTTATAATCAAACAAAAGGTTATAATTATTTGAAATGGATAATTA
65 GTATGAACAGAAATAATTGTTTTATGATAAAACAAAAGGTCATAA-TATTTGAAATAGATAATTA
* * * *
9755202 TTCAAATAGTCATAACTATTCGAACTTATTCGATAAATATACTTATCTTTTAAATCTTTTACTTA
129 TTCAAATAGTCATAACTATTTGAACTTATTTG-TAAATAGATTTATCTTTTAAATCTTTTACTTA
* * * *
9755267 TTATTTTTTGAAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTTCATG-ATACAAAC
193 TTA-ATTTTGGAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTGCATGAATAGAAAC
* * * * *
9755331 TATTGTTTTATGACAAAACAAATGGACATAATTATTTAAAACAAATAATTATTTC-AATAGTCAT
257 AATTGTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTA-TTCAAATAGTCAT
* * *
9755395 AATTATTTGAACTTGTTC-GATAAATAGATTTATCTTTTAAATATTTTACTTTTTAATTTTTGAG
321 AACTATTTGAACTTGTTCAGATAAATAAATTTATCTTTTAAATATTTTACTTATTAATTTTTGA-
* *
9755459 AA-ATTAATAAATTAATATTATTTTATTTTGAA-AAAGCTTGA-ATGAATAGAAATAATTATTTT
385 AATATTAATAAATTAATATTATTTTATTTCGAATAAA-CTT-ACATGAATAAAAATAATTATTTT
* * * * * *
9755521 ATGATAAAATAAAAATGTCATAATTATTTAAAATAAATAATTGTTCAAATAGTCATAGCTGTATT
448 ATGACAAAAT-AAAAGGTAATAATTATTTGAAATAAATAATTATTCAAATAGTCATAAC--TA--
* ** *
9755586 GTTTGAACTTATTCAATAATAA-ATTTATCTTTC
508 -TTTAAACTTATTCGGTAA-AATATTTATCTTTT
* * * * * *
9755619 AAATCTTTTGCTTATTACTTTTCAGAATATTAGTAAATTAATATTATGTTATTCTGAATATG-TT
1 AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATT-TGAATAAGCTT
* * * *
9755683 GTATGAACAGAAATAATTGTTTTATGATAAAAGAAAAGGTCCTAATTATTTAAAATTGATAATTA
65 GTATGAACAGAAATAATTGTTTTATGATAAAACAAAAGGTCATAA-TATTTGAAATAGATAATTA
* * *
9755748 TTC---T-GT-A-AAC-A----AA-TTATCT-T--ATA-A---GTCTTTT--A-C--ATA-TTA-
129 TTCAAATAGTCATAACTATTTGAACTTATTTGTAAATAGATTTATCTTTTAAATCTTTTACTTAT
* ** * * *
9755787 -AAGTTCAGAATATTAATAAATTAGTATTATTTTA-TTCTAAATAAGCTTGTATGAATAGAAACA
194 TAATTTTGGAATATTAATAAATTAATATTATCTTATTTC-AAATAAGCTTGCATGAATAGAAACA
* * * * * * *
9755850 TTTGTTCTATGACAAAACAAAATGCCATAACTATTTCAAATAGATAATTATTCAAATAG-AATAA
258 ATTGTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAATAGTCATAA
* * * *
9755914 CTATTTGAACTTGTTC-GATTAATGAATTTATCTTTTAAATATTTTACATAGTAATTTTTGAAAT
323 CTATTTGAACTTGTTCAGATAAATAAATTTATCTTTTAAATATTTTACTTATTAATTTTTGAAAT
** ** * *
9755978 ATTAATAAATTAATATTATTTTA-TTCTGAATAAGTTTGTATGAATAAAAAAAATTATGTTATGA
388 ATTAATAAATTAATATTATTTTATTTC-GAATAAACTTACATGAATAAAAATAATTATTTTATGA
* * ** *
9756042 CAAAAT---A--TCATAATTATTTGAAATATATAATTGCTCAAATAATCATAACTATTTAAACTT
452 CAAAATAAAAGGTAATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTT
*
9756102 A-TCTGGTAGAATGATTTATCTTTT
517 ATTC-GGTAAAAT-ATTTATCTTTT
* * ** *
9756126 AAATCCTTTAATTATTAATTTTTGAAATATTAATAAATTAATATT-TTTTATTTCGAATAAGTTT
1 AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATTT-GAATAAGCTT
* * * * * *
9756190 GTATGAACATAAACT-TTTGTTCTATTACAAAACAAAAGGTCATATATATTTAAAATAGATAATT
65 GTATGAACAGAAA-TAATTGTTTTATGATAAAACAAAAGGTCATA-ATATTTGAAATAGATAATT
* * * * * * * * * *
9756254 ATTTAAATAGTCATAATTATTTGAATTTGTTAAGTAAATGGATTTAT-TTTTTAATCCTTAAATT
128 ATTCAAATAGTCATAACTATTTGAACTTATT-TGTAAATAGATTTATCTTTTAAATCTTTTACTT
* * * * *
9756318 TTTAATTTTTGAAATATTAATAAATTAACATTATTTTATTTCAAATAAGCTTGCATTAATAGAAA
192 ATTAA-TTTTGGAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTGCATGAATAGAAA
* * * * * *
9756383 CAATTGTTTGATGATAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTTAAATAATCAT
256 CAATTGTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAATAGTCAT
* * *
9756448 AACTATTTGAACTTGTTCAG-CAAATGAACTTATCTTTTA
321 AACTATTTGAACTTGTTCAGATAAATAAATTTATCTTTTA
9756487 TGTTAGCTTT
Statistics
Matches: 1604, Mismatches: 280, Indels: 151
0.79 0.14 0.07
Matches are distributed among these distances:
505 5 0.00
506 23 0.01
507 104 0.06
508 2 0.00
509 2 0.00
510 1 0.00
511 39 0.02
512 1 0.00
513 3 0.00
514 1 0.00
516 7 0.00
517 155 0.10
518 58 0.04
519 3 0.00
520 3 0.00
521 3 0.00
523 3 0.00
524 2 0.00
526 10 0.01
527 1 0.00
528 1 0.00
529 2 0.00
530 3 0.00
531 1 0.00
532 3 0.00
534 6 0.00
535 100 0.06
536 39 0.02
537 1 0.00
539 1 0.00
540 10 0.01
541 205 0.13
542 614 0.38
543 51 0.03
545 2 0.00
546 61 0.04
547 59 0.04
548 18 0.01
549 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (539 bp):
AAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATTTGAATAAGCTTG
TATGAACAGAAATAATTGTTTTATGATAAAACAAAAGGTCATAATATTTGAAATAGATAATTATT
CAAATAGTCATAACTATTTGAACTTATTTGTAAATAGATTTATCTTTTAAATCTTTTACTTATTA
ATTTTGGAATATTAATAAATTAATATTATCTTATTTCAAATAAGCTTGCATGAATAGAAACAATT
GTTTTATGACAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAATAGTCATAACTA
TTTGAACTTGTTCAGATAAATAAATTTATCTTTTAAATATTTTACTTATTAATTTTTGAAATATT
AATAAATTAATATTATTTTATTTCGAATAAACTTACATGAATAAAAATAATTATTTTATGACAAA
ATAAAAGGTAATAATTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTAAACTTATTC
GGTAAAATATTTATCTTTT
Found at i:9755901 original size:17 final size:18
Alignment explanation
Indices: 9755876--9755919 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
9755866 ACAAAATGCC
9755876 ATAACTATTTCAAATAG-
1 ATAACTATTTCAAATAGA
*
9755893 ATAATTA-TTCAAATAGA
1 ATAACTATTTCAAATAGA
9755910 ATAACTATTT
1 ATAACTATTT
9755920 GAACTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 9 0.39
17 12 0.52
18 2 0.09
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (18 bp):
ATAACTATTTCAAATAGA
Found at i:9756271 original size:18 final size:17
Alignment explanation
Indices: 9756236--9756275 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
9756226 AGGTCATATA
9756236 TATTTAAAATAGATAAT
1 TATTTAAAATAGATAAT
9756253 TATTT-AAATAGTCATAAT
1 TATTTAAAATAG--ATAAT
9756271 TATTT
1 TATTT
9756276 GAATTTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.29
17 5 0.24
18 10 0.48
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (17 bp):
TATTTAAAATAGATAAT
Found at i:9756430 original size:180 final size:180
Alignment explanation
Indices: 9755795--9756486 Score: 723
Period size: 180 Copynumber: 3.9 Consensus size: 180
9755785 TAAAGTTCAG
* *
9755795 AATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACATTTGTTCTAT
1 AATATTAATAAATTAATATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAATTGTTCTAT
* * * *
9755860 GACAAAACAAAATGCCATAACTATTTCAAATAGATAATTATTCAAATAGA--ATAACTATTTGAA
66 GACAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTCAAATA-ATCATAACTATTTGAA
* * * ** * *
9755923 CTTGTTCGATTAATGAATTTATCTTTTAAATATTTTACA-TAGTAATTTTTGA
130 CTTGTTAG-TAAATGGATTTATCTTTTAAAT-CCTTAAATTATTAATTTTTGA
* * * * *
9755975 AATATTAATAAATTAATATTATTTTATTCTGAATAAGTTTGTATGAATAAAAAAAATTATGT-TA
1 AATATTAATAAATTAATATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAATTGT-TCTA
* * ** *
9756039 TGAC---A-AAATA-TCATAATTATTTGAAATATATAATTGCTCAAATAATCATAACTATTTAAA
65 TGACAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAA
* * *
9756099 CTTATCTGGTAGAAT-GATTTATCTTTTAAATCCTTTAATTATTAATTTTTGA
130 CTTGT-TAGTA-AATGGATTTATCTTTTAAATCCTTAAATTATTAATTTTTGA
* * * * **
9756151 AATATTAATAAATTAATATT-TTTTATT-TCGAATAAGTTTGTATGAACATAAACTTTTGTTCTA
1 AATATTAATAAATTAATATTATTTTATTCT-AAATAAGCTTGTATGAATAGAAACAATTGTTCTA
* * * * * *
9756214 TTACAAAACAAAAGGTCAT-ATATATTTAAAATAGATAATTATTTAAATAGTCATAATTATTTGA
65 TGACAAAACAAAAAGTCATAAT-TATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGA
* * *
9756278 ATTTGTTAAGTAAATGGATTTAT-TTTTTAATCCTTAAATTTTTAATTTTTGA
129 ACTTGTT-AGTAAATGGATTTATCTTTTAAATCCTTAAATTATTAATTTTTGA
* * *
9756330 AATATTAATAAATTAACATTATTTTATT-TCAAATAAGCTTGCATTAATAGAAACAATTGTT-TG
1 AATATTAATAAATTAATATTATTTTATTCT-AAATAAGCTTGTATGAATAGAAACAATTGTTCT-
* *
9756393 ATGATAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTTAAATAATCATAACTATTTGA
64 ATGACAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGA
* * *
9756458 ACTTGTTCAGCAAATGAACTTATCTTTTA
129 ACTTGTT-AGTAAATGGATTTATCTTTTA
9756487 TGTTAGCTTT
Statistics
Matches: 423, Mismatches: 69, Indels: 39
0.80 0.13 0.07
Matches are distributed among these distances:
174 3 0.01
175 67 0.16
176 67 0.16
177 6 0.01
178 1 0.00
179 55 0.13
180 217 0.51
181 7 0.02
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.43
Consensus pattern (180 bp):
AATATTAATAAATTAATATTATTTTATTCTAAATAAGCTTGTATGAATAGAAACAATTGTTCTAT
GACAAAACAAAAAGTCATAATTATTTGAAATAGATAATTATTCAAATAATCATAACTATTTGAAC
TTGTTAGTAAATGGATTTATCTTTTAAATCCTTAAATTATTAATTTTTGA
Found at i:9756433 original size:17 final size:16
Alignment explanation
Indices: 9756411--9756442 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
9756401 ACAAAAAGTC
9756411 ATAATTATTTGAAATAG
1 ATAATTATTT-AAATAG
9756428 ATAATTATTTAAATA
1 ATAATTATTTAAATA
9756443 ATCATAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
ATAATTATTTAAATAG
Found at i:9758653 original size:117 final size:115
Alignment explanation
Indices: 9758460--9758687 Score: 321
Period size: 117 Copynumber: 2.0 Consensus size: 115
9758450 ATTTGAACAA
* * * *
9758460 TAATCTATTTGAACTAATTATGACCTTTTTTTGTTATATATAATTATTTTCATGCATTCAAGCTT
1 TAATCTATTTGAACTAATTATGACCTTTTTTTGTCATATATAATTATTTCCATGCATACAAACTT
* *
9758525 ATTCAGAATAAAATAATATTAAATTATTAATGTTCTGAAAATTAATCCTT
66 ATTCAGAATAAAATAATATTAAATTAGTAATGTTCTAAAAATTAATCCTT
* * * *
9758575 TAATCTATTTGAATTAATTATGACATTTTGTTTTGTCATATATAATTATTTCCATGTATACAAAT
1 TAATCTATTTGAACTAATTATGAC-CTTT-TTTTGTCATATATAATTATTTCCATGCATACAAAC
* * *
9758640 TTATTTAGAATAAAATAATATTAATTTAGTAATGTTTTAAAAATTAAT
64 TTATTCAGAATAAAATAATATTAAATTAGTAATGTTCTAAAAATTAAT
9758688 AGGTAAAAGA
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
115 23 0.23
116 3 0.03
117 72 0.73
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (115 bp):
TAATCTATTTGAACTAATTATGACCTTTTTTTGTCATATATAATTATTTCCATGCATACAAACTT
ATTCAGAATAAAATAATATTAAATTAGTAATGTTCTAAAAATTAATCCTT
Found at i:9759628 original size:23 final size:22
Alignment explanation
Indices: 9759589--9759637 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
9759579 GCTTTATTGT
9759589 TTTTAGGGTTTCAA-TTTACAG
1 TTTTAGGGTTTCAATTTTACAG
* *
9759610 TTTTATGGTGTTTCGATTTTAGAG
1 TTTTA-GG-GTTTCAATTTTACAG
9759634 TTTT
1 TTTT
9759638 GGGAAAGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 5 0.22
22 2 0.09
23 6 0.26
24 10 0.43
ACGTcount: A:0.18, C:0.06, G:0.20, T:0.55
Consensus pattern (22 bp):
TTTTAGGGTTTCAATTTTACAG
Found at i:9760238 original size:73 final size:75
Alignment explanation
Indices: 9760070--9760240 Score: 165
Period size: 73 Copynumber: 2.3 Consensus size: 75
9760060 TAGAAAGATA
* * *
9760070 TTAGGGTTTTGGGTGA-AGGGTTAGCAAGTTTGGTGTTTTTAGGTTTTCAAGTGACGATTTTAAG
1 TTAGGGTTTTAGGTGATA-GGTTAGCAAGGTTGGTGTGTTTAGGTTTTCAAGTGACGATTTTAAG
* *
9760134 GTGGAGCGATT
65 ATGGAACGATT
* * * * * *
9760145 TTTGGG-TTTCGTGTGTTAGGTTAGC-GGGTTGGTG-GTTTAGGGTTTT-AGGTGAC-AGTTTTG
1 TTAGGGTTTTAG-GTGATAGGTTAGCAAGGTTGGTGTGTTTA-GGTTTTCAAGTGACGA-TTTTA
9760205 AGATGGAACGATT
63 AGATGGAACGATT
9760218 TTAGGGTTTTAGGTGATAGGTTA
1 TTAGGGTTTTAGGTGATAGGTTA
9760241 TCGATTTTGA
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
72 1 0.01
73 40 0.51
74 21 0.27
75 15 0.19
76 1 0.01
ACGTcount: A:0.18, C:0.05, G:0.36, T:0.41
Consensus pattern (75 bp):
TTAGGGTTTTAGGTGATAGGTTAGCAAGGTTGGTGTGTTTAGGTTTTCAAGTGACGATTTTAAGA
TGGAACGATT
Found at i:9761803 original size:20 final size:19
Alignment explanation
Indices: 9761750--9761806 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
9761740 TTAGATAAAG
*
9761750 TTTTAAAAATTATTTTTAT
1 TTTTAAAAATAATTTTTAT
** *
9761769 TTAGAAATATTAATTTTTAT
1 TTTTAAA-AATAATTTTTAT
*
9761789 TTTTAAAAATAAATTTTA
1 TTTTAAAAATAATTTTTA
9761807 AAAACCACTT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTTTAAAAATAATTTTTAT
Found at i:9766702 original size:19 final size:18
Alignment explanation
Indices: 9766658--9766715 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 18
9766648 TTTTATGCTT
9766658 TTTTATATTTTTTAAAAAA
1 TTTTA-ATTTTTTAAAAAA
*
9766677 -TTAAATTTTTTAAAAATA
1 TTTTAATTTTTTAAAAA-A
9766695 TTTTAA---TTTAAAAAA
1 TTTTAATTTTTTAAAAAA
9766710 TTTTAA
1 TTTTAA
9766716 CCAAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
15 7 0.20
16 8 0.23
17 12 0.34
18 4 0.11
19 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTAATTTTTTAAAAAA
Found at i:9766704 original size:16 final size:15
Alignment explanation
Indices: 9766685--9766715 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
9766675 AATTAAATTT
9766685 TTTAAAAATATTTTAA
1 TTTAAAAA-ATTTTAA
9766701 TTTAAAAAATTTTAA
1 TTTAAAAAATTTTAA
9766716 CCAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTAAAAAATTTTAA
Found at i:9766831 original size:43 final size:42
Alignment explanation
Indices: 9766779--9766868 Score: 128
Period size: 44 Copynumber: 2.1 Consensus size: 42
9766769 TAACATCCAT
*
9766779 TTTATAAAACAAATT-TTATTTTTAGTTTCTTTTTATACTGTA
1 TTTATAAAACAAATTATT-TTTTTAGTTTCTTTTTATACCGTA
*
9766821 TTTAGTAAAACGAATTAATTTTTTTAGTTTCTTTTTATACCGTA
1 TTTA-TAAAACAAATT-ATTTTTTTAGTTTCTTTTTATACCGTA
9766865 TTTA
1 TTTA
9766869 ATGTAATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
42 4 0.09
43 10 0.23
44 27 0.63
45 2 0.05
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (42 bp):
TTTATAAAACAAATTATTTTTTTAGTTTCTTTTTATACCGTA
Found at i:9767187 original size:29 final size:30
Alignment explanation
Indices: 9767159--9767222 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
9767149 GTGATTAAAT
9767159 TGTAAA-TTTTT-AAAATTAAGTAATCAAA
1 TGTAAATTTTTTAAAAATTAAGTAATCAAA
*
9767187 T-TAAATTTTTTTAAAAATTAAGTGATCAAAA
1 TGTAAA-TTTTTTAAAAATTAAGTAATC-AAA
9767218 TGTAA
1 TGTAA
9767223 TTCATTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
27 4 0.13
28 1 0.03
29 5 0.17
30 13 0.43
31 4 0.13
32 3 0.10
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (30 bp):
TGTAAATTTTTTAAAAATTAAGTAATCAAA
Found at i:9767561 original size:22 final size:22
Alignment explanation
Indices: 9767535--9767577 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9767525 TTTAATTATT
9767535 TATTTAATTTCATAGTTATATA
1 TATTTAATTTCATAGTTATATA
* *
9767557 TATTTAATTTTATATTTATAT
1 TATTTAATTTCATAGTTATAT
9767578 TAAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TATTTAATTTCATAGTTATATA
Found at i:9767594 original size:20 final size:22
Alignment explanation
Indices: 9767571--9767617 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
9767561 TAATTTTATA
9767571 TTTATA-TTAAAAAAT-AATAT
1 TTTATATTTAAAAAATAAATAT
9767591 TTTATATTTAAAAAATAAATAT
1 TTTATATTTAAAAAATAAATAT
9767613 TTTAT
1 TTTAT
9767618 TAATTTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 6 0.24
21 9 0.36
22 10 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTATATTTAAAAAATAAATAT
Found at i:9767618 original size:20 final size:20
Alignment explanation
Indices: 9767571--9767615 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
9767561 TAATTTTATA
9767571 TTTATATTAAAAAATAATATT
1 TTTAT-TTAAAAAATAATATT
9767592 TTATATTTAAAAAATAAATATT
1 TT-TATTTAAAAAAT-AATATT
9767614 TT
1 TT
9767616 ATTAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTATTTAAAAAATAATATT
Found at i:9767734 original size:2 final size:2
Alignment explanation
Indices: 9767727--9767780 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
9767717 ATTCAAGTTT
*
9767727 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9767769 TA TA TA TA TA TA
1 TA TA TA TA TA TA
9767781 AAATCGGATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:9770320 original size:2 final size:2
Alignment explanation
Indices: 9770313--9770358 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
9770303 CTGCTGCCAC
9770313 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9770355 CT CT
1 CT CT
9770359 TCCCCAAACC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:9775626 original size:30 final size:30
Alignment explanation
Indices: 9775571--9775628 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9775561 AGTATTGCAC
** *
9775571 CTAATTAAACCCTTAAAGTACTATTTTTAT
1 CTAATTAAACCCTTAAAACAATATTTTTAT
*
9775601 CTAATTAAGCCCTTAAAACAATATTTTT
1 CTAATTAAACCCTTAAAACAATATTTTT
9775629 GTTTAAAGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.41
Consensus pattern (30 bp):
CTAATTAAACCCTTAAAACAATATTTTTAT
Found at i:9780095 original size:165 final size:166
Alignment explanation
Indices: 9779809--9780123 Score: 389
Period size: 165 Copynumber: 1.9 Consensus size: 166
9779799 ATGATATTCC
* * * * *
9779809 TAAGCTACAAAAGTTGCACATAGCTAGGTGGTTATAAAGCAGTGTGAATTCTTTGTCTTAAGGGG
1 TAAGCCACAAAAGTTGCACATAGCTAGGTGATTATAAAGCAGAGTGAATGCTTTATCTTAAGGGG
* * ** *
9779874 GAGATTCATTGAAGAAAGAAAATTCTAATGGTTTATCTTTAAGTTTAAAAGAAAGAAGAAAGGAG
66 GAGATTCAATGAAGAAAGAAAATTCTAATGCTGCATCTTTAAGTGTAAAAGAAAGAAGAAAGGAG
9779939 AAGCAAGGTTCCTATCCAAATTCAATATATTATTTT
131 AAGCAAGGTTCCTATCCAAATTCAATATATTATTTT
* * * * * **
9779975 TAAGCCACAAAATTTGCACATAGCTAGGTGATTCTCAAGGAGAGTGGATGCTTTATC-TAATTGG
1 TAAGCCACAAAAGTTGCACATAGCTAGGTGATTATAAAGCAGAGTGAATGCTTTATCTTAAGGGG
* * * * *
9780039 GAGATTTAATGAAGAAAGAACATTTTAATGCTGCATCTTTAGGTGTAGAAGAAAGAAGAAAGGAG
66 GAGATTCAATGAAGAAAGAAAATTCTAATGCTGCATCTTTAAGTGTAAAAGAAAGAAGAAAGGAG
** * *
9780104 GTGCAGGGTTCCTGTCCAAA
131 AAGCAAGGTTCCTATCCAAA
9780124 ATCCTTTTTG
Statistics
Matches: 123, Mismatches: 26, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
165 76 0.62
166 47 0.38
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (166 bp):
TAAGCCACAAAAGTTGCACATAGCTAGGTGATTATAAAGCAGAGTGAATGCTTTATCTTAAGGGG
GAGATTCAATGAAGAAAGAAAATTCTAATGCTGCATCTTTAAGTGTAAAAGAAAGAAGAAAGGAG
AAGCAAGGTTCCTATCCAAATTCAATATATTATTTT
Found at i:9794141 original size:18 final size:17
Alignment explanation
Indices: 9794110--9794157 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
9794100 ACCAGTAAAA
*
9794110 TAAAATAT--AAAATTT
1 TAAAATATAAAAAAATT
9794125 TAAAATATAAAAAAA-T
1 TAAAATATAAAAAAATT
9794141 TAAAATATAAAATAAAT
1 TAAAATATAAAA-AAAT
9794158 CAAAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.29
16 13 0.46
17 7 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATATAAAAAAATT
Found at i:9794151 original size:23 final size:21
Alignment explanation
Indices: 9794105--9794185 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 21
9794095 TGAAAACCAG
9794105 TAAAATAAAATATAAAATTTTAAAA
1 TAAAA-AAAAT-TAAAA--TTAAAA
9794130 TATAAAAAAATTAAAATATAAAA
1 TA-AAAAAAATTAAAAT-TAAAA
*
9794153 TAAATCAAAAAATAAAATTAAAA
1 TAAA--AAAAATTAAAATTAAAA
9794176 TGAAAAAAAA
1 T-AAAAAAAA
9794186 AAAAAGAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
22 8 0.16
23 13 0.26
24 19 0.38
25 7 0.14
26 3 0.06
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.25
Consensus pattern (21 bp):
TAAAAAAAATTAAAATTAAAA
Found at i:9794157 original size:17 final size:17
Alignment explanation
Indices: 9794105--9794170 Score: 75
Period size: 17 Copynumber: 4.1 Consensus size: 17
9794095 TGAAAACCAG
*
9794105 TAAAATAAAATATAAAA
1 TAAATTAAAATATAAAA
*
9794122 T--TTTAAAATATAAAA
1 TAAATTAAAATATAAAA
9794137 -AAATTAAAATATAAAA
1 TAAATTAAAATATAAAA
* *
9794153 TAAATCAAAAAATAAAA
1 TAAATTAAAATATAAAA
9794170 T
1 T
9794171 TAAAATGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 12 0.29
16 13 0.32
17 16 0.39
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATTAAAATATAAAA
Found at i:9794977 original size:3 final size:3
Alignment explanation
Indices: 9794963--9795095 Score: 72
Period size: 3 Copynumber: 47.7 Consensus size: 3
9794953 TTCTCGTCAC
* *
9794963 AAT AAG AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT -AT ACTT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* * *
9795007 -TT AAT -AT ACT -AT AAT -AT AAT AAT GAT AA- AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
9795049 -AT AAT AAT -GT AAT -GT AAT ACT AGT AAC AAA AAT AAT GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9795094 AA
1 AA
9795096 AAATCGACCT
Statistics
Matches: 96, Mismatches: 22, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
2 18 0.19
3 76 0.79
4 2 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:9794998 original size:5 final size:5
Alignment explanation
Indices: 9794970--9795054 Score: 73
Period size: 5 Copynumber: 16.2 Consensus size: 5
9794960 CACAATAAGA
* * *
9794970 ATAAT AATAAT AATAAT AATAAT ATAAT ATACT -TAAT TTAAT ATACT
1 ATAAT -ATAAT -ATAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
* *
9795017 ATAAT ATAAT AATGAT AAAAT AATAAT ATAAT ATAAT A
1 ATAAT ATAAT -ATAAT ATAAT -ATAAT ATAAT ATAAT A
9795055 ATGTAATGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
4 3 0.04
5 39 0.58
6 25 0.37
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:9795062 original size:32 final size:32
Alignment explanation
Indices: 9794964--9795062 Score: 87
Period size: 32 Copynumber: 3.0 Consensus size: 32
9794954 TCTCGTCACA
9794964 ATAAGAATAATAATAATAATAATAATAATATAAT-
1 ATAA-AATAATAAT-ATAAT-ATAATAATATAATG
* * *
9794998 ATACTTAAT-TTAATATACTATAAT-ATAATAATG
1 ATA--AAATAATAATATAATATAATAAT-ATAATG
*
9795031 ATAAAATAATAATATAATATAATAATGTAATG
1 ATAAAATAATAATATAATATAATAATATAATG
9795063 TAATACTAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
31 5 0.10
32 28 0.54
33 9 0.17
34 7 0.13
35 3 0.06
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (32 bp):
ATAAAATAATAATATAATATAATAATATAATG
Found at i:9796935 original size:7 final size:7
Alignment explanation
Indices: 9796913--9796973 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
9796903 TCATTTTTGC
9796913 TTTT-TA
1 TTTTATA
9796919 TTTTGA-A
1 TTTT-ATA
9796926 TTTTATA
1 TTTTATA
9796933 TTTTATTA
1 TTTTA-TA
9796941 TTTT-TA
1 TTTTATA
9796947 TTTT-TA
1 TTTTATA
9796953 TTTTATA
1 TTTTATA
*
9796960 TTATATA
1 TTTTATA
9796967 TATTTAT
1 T-TTTAT
9796974 TTCTTTTGTA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
6 17 0.36
7 20 0.43
8 10 0.21
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (7 bp):
TTTTATA
Found at i:9796944 original size:22 final size:20
Alignment explanation
Indices: 9796916--9796958 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
9796906 TTTTTGCTTT
9796916 TTATTTTGAATTTTATATTTTA
1 TTATTTT-AATTTT-TATTTTA
*
9796938 TTATTTTTATTTTTATTTTA
1 TTATTTTAATTTTTATTTTA
9796958 T
1 T
9796959 ATTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 5 0.25
22 7 0.35
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTATTTTAATTTTTATTTTA
Found at i:9796944 original size:27 final size:26
Alignment explanation
Indices: 9796913--9796975 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
9796903 TCATTTTTGC
*
9796913 TTTTTATTTTGAATTTTATATTTTATTA
1 TTTTTATTTT-AATTTTATATTATA-TA
*
9796941 TTTTTATTTTTATTTTATATTATATA
1 TTTTTATTTTAATTTTATATTATATA
*
9796967 TATTTATTT
1 TTTTTATTT
9796976 CTTTTGTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 10 0.31
27 12 0.38
28 10 0.31
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (26 bp):
TTTTTATTTTAATTTTATATTATATA
Found at i:9796970 original size:22 final size:22
Alignment explanation
Indices: 9796926--9796971 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
9796916 TTATTTTGAA
* *
9796926 TTTTATATTTTATTATTTTTAT
1 TTTTATATTTTATTATATATAT
9796948 TTTTAT-TTTATATTATATATAT
1 TTTTATATTT-TATTATATATAT
9796970 TT
1 TT
9796972 ATTTCTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTATATTTTATTATATATAT
Found at i:9796989 original size:26 final size:24
Alignment explanation
Indices: 9796926--9797007 Score: 58
Period size: 26 Copynumber: 3.2 Consensus size: 24
9796916 TTATTTTGAA
* *
9796926 TTTTATATTTTATTATTTTTATTT
1 TTTTATATATTATTATATTTATTT
*
9796950 TTATTTTATATTATATATATTTATTT
1 TT-TTATATATTAT-TATATTTATTT
* * *
9796976 CTTTTGTATCTTA-TGTATTTATTAT
1 -TTTTATATATTATTATATTTATT-T
9797001 TTATTAT
1 TT-TTAT
9797008 TACTATTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
24 13 0.28
25 13 0.28
26 18 0.39
27 2 0.04
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (24 bp):
TTTTATATATTATTATATTTATTT
Found at i:9797003 original size:7 final size:7
Alignment explanation
Indices: 9796934--9797019 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 7
9796924 AATTTTATAT
9796934 TTTATTA
1 TTTATTA
9796941 TTT-TTA
1 TTTATTA
9796947 TTT-TTA
1 TTTATTA
9796953 TTT-TATA
1 TTTAT-TA
9796960 TTATATATA
1 TT-TAT-TA
9796969 TTTATT-
1 TTTATTA
*
9796975 TCTTTTGTA
1 T-TTAT-TA
9796984 TCTTATGTA
1 T-TTAT-TA
9796993 TTTATTA
1 TTTATTA
9797000 TTTATTA
1 TTTATTA
*
9797007 -TTACTA
1 TTTATTA
9797013 TTTATTA
1 TTTATTA
9797020 ATATATATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
6 19 0.28
7 25 0.37
8 9 0.13
9 15 0.22
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:9797133 original size:26 final size:25
Alignment explanation
Indices: 9797064--9797141 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 25
9797054 TTTCTGTTAA
9797064 TATTTATATA-TAT-TTTATTTATC
1 TATTTATATATTATATTTATTTATC
* *
9797087 TAGTTATAAATT-TATTATTATTTATC
1 TATTTATATATTATA-T-TTATTTATC
*
9797113 TATTTATATATTATAATTTATCTAT-
1 TATTTATATATTAT-ATTTATTTATC
9797138 TATT
1 TATT
9797142 ATTTTTAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 9 0.20
24 1 0.02
25 5 0.11
26 26 0.59
27 2 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (25 bp):
TATTTATATATTATATTTATTTATC
Found at i:9797173 original size:41 final size:40
Alignment explanation
Indices: 9797073--9797208 Score: 139
Period size: 41 Copynumber: 3.2 Consensus size: 40
9797063 ATATTTATAT
*
9797073 ATATTTTATTTATCTAGTTATAAATTTATTATTATTTATCTATTTA
1 ATATTTTATTTATCTA-TTAT-TATTT-TTA--ATTTATCTA-TTA
* *
9797119 TATATTATAATTTATCTATTATTATTTTTAATTTATCTGTTA
1 -ATATT-TTATTTATCTATTATTATTTTTAATTTATCTATTA
*
9797161 ATATTTTGATTTATCTGATTATTTTTTTTAA-TTATCTATTA
1 ATATTTT-ATTTATCT-ATTATTATTTTTAATTTATCTATTA
9797202 ATATTTT
1 ATATTTT
9797209 TTATTTGATT
Statistics
Matches: 80, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
40 1 0.01
41 29 0.36
42 16 0.20
43 8 0.10
45 3 0.04
46 4 0.05
47 9 0.11
48 10 0.12
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (40 bp):
ATATTTTATTTATCTATTATTATTTTTAATTTATCTATTA
Found at i:9797209 original size:20 final size:21
Alignment explanation
Indices: 9797071--9797214 Score: 114
Period size: 21 Copynumber: 6.6 Consensus size: 21
9797061 TAATATTTAT
9797071 ATATATTTT-ATTTATCTAGTTA
1 ATAT-TTTTAATTTATCTA-TTA
* *
9797093 TAAATTTATTATTATTTATCTATTT
1 -ATATTT-TTA--ATTTATCTATTA
*
9797118 ATATATTATAATTTATCTATTA
1 ATAT-TTTTAATTTATCTATTA
* *
9797140 TTATTTTTAATTTATCTGTTA
1 ATATTTTTAATTTATCTATTA
*
9797161 ATA-TTTTGATTTATCTGATTA
1 ATATTTTTAATTTATCT-ATTA
* *
9797182 TTTTTTTTAA-TTATCTATTA
1 ATATTTTTAATTTATCTATTA
*
9797202 ATATTTTTTATTT
1 ATATTTTTAATTT
9797215 GATTTTTATT
Statistics
Matches: 96, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
20 23 0.24
21 29 0.30
22 21 0.22
23 5 0.05
24 5 0.05
25 4 0.04
26 9 0.09
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (21 bp):
ATATTTTTAATTTATCTATTA
Found at i:9797933 original size:18 final size:18
Alignment explanation
Indices: 9797912--9797967 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
9797902 CGTTTTCAGG
9797912 TTTTTTTTTATTTTTTTA
1 TTTTTTTTTATTTTTTTA
* * *
9797930 TTTTATTTTACTTTATTA
1 TTTTTTTTTATTTTTTTA
* * *
9797948 TTTATTATTATTTATTTA
1 TTTTTTTTTATTTTTTTA
9797966 TT
1 TT
9797968 AGATTAGATT
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTTTATTTTTTTA
Found at i:9798030 original size:32 final size:32
Alignment explanation
Indices: 9797992--9798053 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 32
9797982 TAACATTCTT
9797992 TTTATTTTTA-TTTC-TATTTTTATTTATTTTCC
1 TTTATTTTTATTTTCAT-TTTTTATTT-TTTTCC
9798024 TTTATTTTTATTTTCATTTTTTATTTTTTT
1 TTTATTTTTATTTTCATTTTTTATTTTTTT
9798054 ATTTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 14 0.50
33 13 0.46
34 1 0.04
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (32 bp):
TTTATTTTTATTTTCATTTTTTATTTTTTTCC
Found at i:9798053 original size:16 final size:16
Alignment explanation
Indices: 9797990--9798058 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
9797980 TTTAACATTC
9797990 TTTTTATTTTTATTTC-T
1 TTTTTA-TTTT-TTTCAT
*
9798007 ATTTTTATTTATTTTCCT
1 -TTTTTATTT-TTTTCAT
*
9798025 TTATTT-TTATTTTCAT
1 TT-TTTATTTTTTTCAT
9798041 TTTTTATTTTTTT-AT
1 TTTTTATTTTTTTCAT
9798056 TTT
1 TTT
9798059 CTTTTCTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
15 8 0.18
16 14 0.32
17 11 0.25
18 11 0.25
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTATTTTTTTCAT
Found at i:9798058 original size:6 final size:6
Alignment explanation
Indices: 9797990--9798051 Score: 63
Period size: 6 Copynumber: 9.8 Consensus size: 6
9797980 TTTAACATTC
* *
9797990 TTTTTA TTTTTA TTTCTA TTTTTA TTTATT- TTCCTTTA TTTTTA TTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTT-TTA TT--TTTA TTTTTA TTTTTA
9798040 TTTTTTA TTTTT
1 -TTTTTA TTTTT
9798052 TTATTTTCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
6 35 0.74
7 9 0.19
8 3 0.06
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:9798058 original size:26 final size:25
Alignment explanation
Indices: 9797991--9798068 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
9797981 TTAACATTCT
*
9797991 TTTTATTTTTATTTCTATTTTTATTTA
1 TTTT-TTTTTATTT-TATTTTCATTTA
** *
9798018 TTTTCCTTTATTTTTATTTTCATTTT
1 TTTTTTTTTA-TTTTATTTTCATTTA
*
9798044 TTATTTTTTTATTTTCTTTTC-TTTA
1 TT-TTTTTTTATTTTATTTTCATTTA
9798069 AATAAAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
25 3 0.07
26 25 0.61
27 13 0.32
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTTTTTATTTTATTTTCATTTA
Found at i:9798171 original size:58 final size:58
Alignment explanation
Indices: 9798081--9798583 Score: 628
Period size: 58 Copynumber: 8.7 Consensus size: 58
9798071 TAAAATTTAA
*
9798081 AAAAAATATTTTTG-GGAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* * *
9798138 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* * * **
9798196 AAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTTCTCGAAAATAAACTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
9798254 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTT-T
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* * * * *
9798311 CAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTCA
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* * *
9798370 AAAGAAATATTTTT-AGGAAAAGTTGAAAGTATCAA-TTTTCTTAAAAATAAATTTTCA
1 AAA-AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
9798427 AAAGAAATATTTTTTG-GGAGAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTC-
1 AAA-AAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* * * * * *
9798485 AAAAATAAATTTTTGAGAAAAAGTTGAAAGTAT-AAATTTTCCTCAAAATTAAAG-TTTCA
1 AAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-T-AAGTTTTCT
9798544 AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTT
1 AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTT
9798584 TCTGCACAAA
Statistics
Matches: 397, Mismatches: 35, Indels: 26
0.87 0.08 0.06
Matches are distributed among these distances:
57 66 0.17
58 287 0.72
59 44 0.11
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
Found at i:9798362 original size:174 final size:170
Alignment explanation
Indices: 9798068--9798583 Score: 719
Period size: 174 Copynumber: 3.0 Consensus size: 170
9798058 TCTTTTCTTT
* * *
9798068 AAATAAAATTTAAAAAAAATATTTTTGGGAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAGT
1 AAATAAACTTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGT
* *
9798133 TTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAA
66 TTTC-AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAG-TTTCAAA
* *
9798198 AAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTTCTCGA
129 AAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTTCTCAA
* * *
9798241 AAATAAACTTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG
1 AAATAAACTTTCAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG
* * *
9798306 TTTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTCAA
65 -TTTTCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTCAA
*
9798371 AAGAAATATTTTTAGGAAAAGTTGAAAGTATCAA-TTTTCTTAA
128 AA-AAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTCAA
* * *
9798414 AAATAAATTTTCAAAAGAAATATTTTTTGGGAGAAGTTGAAAGTATCAATTTTTCTTAAAAATAA
1 AAATAAACTTTCAAAA-AAATA-TTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAA
* * * *
9798479 GTTTTCAAAAATAAATTTTTGAGAAAAAGTTGAAAGTATAAATTTTCCTCAAAATTAAAGTTTCA
64 GTTTTCAAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTCA
*
9798544 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTT
127 AAAAAATATTTTTAG-GAAAAGTTGAAAGTATCAATTTTT
9798584 TCTGCACAAA
Statistics
Matches: 306, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
173 66 0.22
174 213 0.70
175 27 0.09
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (170 bp):
AAATAAACTTTCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGT
TTTCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTCAAAAA
AATATTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTCAA
Found at i:9802512 original size:9 final size:9
Alignment explanation
Indices: 9802498--9802572 Score: 60
Period size: 10 Copynumber: 7.6 Consensus size: 9
9802488 AACAATGAAT
*
9802498 GAAAAATGA
1 GAAAAAAGA
9802507 GAAAAAAAGA
1 G-AAAAAAGA
*
9802517 TGATAAAAAAA
1 -GA-AAAAAGA
9802528 GAAAAAATAGA
1 G-AAAAA-AGA
9802539 GAAAAAAGA
1 GAAAAAAGA
*
9802548 AAAAAAAGAA
1 GAAAAAAG-A
9802558 GAAAAAATGA
1 GAAAAAA-GA
9802568 GAAAA
1 GAAAA
9802573 TGAAAAAAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
9 11 0.20
10 31 0.57
11 12 0.22
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (9 bp):
GAAAAAAGA
Found at i:9802524 original size:21 final size:20
Alignment explanation
Indices: 9802496--9802572 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 20
9802486 TCAACAATGA
*
9802496 ATGAAAAATGAGAAAAAAAG
1 ATGAAAAAAGAGAAAAAAAG
*
9802516 ATGATAAAAAAAGAAAAAATAG
1 ATGA-AAAAAGAGAAAAAA-AG
9802538 A-GAAAAAAGA-AAAAAAAG
1 ATGAAAAAAGAGAAAAAAAG
*
9802556 AAGAAAAAATGAGAAAA
1 ATGAAAAAA-GAGAAAA
9802573 TGAAAAAAGA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
18 3 0.06
19 13 0.27
20 12 0.24
21 18 0.37
22 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (20 bp):
ATGAAAAAAGAGAAAAAAAG
Found at i:9802543 original size:18 final size:18
Alignment explanation
Indices: 9802522--9802584 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
9802512 AAAGATGATA
9802522 AAAAAAGAAAAAATAGAG
1 AAAAAAGAAAAAATAGAG
*
9802540 AAAAAAGAAAAAAAAGAAG
1 AAAAAAGAAAAAATAG-AG
*
9802559 AAAAAATGAGAAAAT---G
1 AAAAAA-GAAAAAATAGAG
9802575 AAAAAAGAAA
1 AAAAAAGAAA
9802585 TTCAAACTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
15 3 0.08
16 7 0.18
18 15 0.38
19 8 0.21
20 6 0.15
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (18 bp):
AAAAAAGAAAAAATAGAG
Found at i:9802544 original size:30 final size:27
Alignment explanation
Indices: 9802521--9802580 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
9802511 AAAAGATGAT
9802521 AAAAAAAGAAAAAATAGAGAAAAAAGA
1 AAAAAAAGAAAAAATAGAGAAAAAAGA
* *
9802548 AAAAAAAGAAGAAAAAATGAG-AAAATGA
1 AAAAAAAGAA-AAAATA-GAGAAAAAAGA
9802576 AAAAA
1 AAAAA
9802581 GAAATTCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 10 0.34
28 16 0.55
29 3 0.10
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (27 bp):
AAAAAAAGAAAAAATAGAGAAAAAAGA
Found at i:9804326 original size:41 final size:41
Alignment explanation
Indices: 9804263--9804447 Score: 194
Period size: 41 Copynumber: 4.5 Consensus size: 41
9804253 ATGATTGTTA
* *
9804263 AAGAGTAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTCG
1 AAGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
9804304 AAGAGCAATTTATTTTTTAAAGTCGTGGTG-TTCTATTTAG
1 AAGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * ***
9804344 ATGAGCAATTTACTTTTTAAAAGTTAAGGTGCCTCTGTTTAG
1 AAGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
9804386 AGGAGCAATTTACTTTTCAAAGTTGTGATGCCTCTATTTAG
1 AAGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
9804427 -AGGGACAATTTACTTTTCAAA
1 AAGAG-CAATTTACTTTTCAAA
9804448 AGTTAAGCTT
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
40 20 0.17
41 79 0.66
42 20 0.17
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (41 bp):
AAGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:9804408 original size:82 final size:82
Alignment explanation
Indices: 9804269--9804501 Score: 237
Period size: 82 Copynumber: 2.9 Consensus size: 82
9804259 GTTAAAGAGT
*** * * * *
9804269 AATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTCGAAGAGCAATTTATTTTTTAAAGTCGTGGT
1 AATTTACTTTTCAAAAGTTAAGGTGCCTCTGTTTAG-AGAGCAATTTACTTTTCAAAGTCGTGAT
*
9804333 G-TTCTATTTAGATGAG-C
65 GCCTCTATTTAGA-GAGAC
* *
9804350 AATTTACTTTTTAAAAGTTAAGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTGTGAT
1 AATTTACTTTTCAAAAGTTAAGGTGCCTCTGTTTAGA-GAGCAATTTACTTTTCAAAGTCGTGAT
*
9804415 GCCTCTATTTAGAGGGAC
65 GCCTCTATTTAGAGAGAC
* * *
9804433 AATTTACTTTTCAAAAGTTAA---GCTTCTGATTATGAGAGCCATTTACTTTTCAAAAGTCGTTG
1 AATTTACTTTTCAAAAGTTAAGGTGCCTCTGTTTA-GAGAGCAATTTACTTTTC-AAAGTCG-TG
9804495 A-GCCTCT
63 ATGCCTCT
9804502 GATTATAGGA
Statistics
Matches: 129, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
80 24 0.19
81 26 0.20
82 48 0.37
83 31 0.24
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (82 bp):
AATTTACTTTTCAAAAGTTAAGGTGCCTCTGTTTAGAGAGCAATTTACTTTTCAAAGTCGTGATG
CCTCTATTTAGAGAGAC
Found at i:9804531 original size:42 final size:43
Alignment explanation
Indices: 9804475--9804683 Score: 189
Period size: 42 Copynumber: 4.9 Consensus size: 43
9804465 TGAGAGCCAT
*
9804475 TTACTTTTCAAAAGTCGTTGAGCCTCTGATTATAGGAG-TTTTA
1 TTACTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTTA
* * * **
9804518 GTTA-TTTTCAAAGTTGTTAAGCTTCTGATTAGAGGAGC-CAT-
1 -TTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTTA
* * *
9804559 TTACTTTTCAAAGTTGTTGAGCCTTTGATTAGAGGAGCCATTTA
1 TTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CTTTTA
* *
9804603 TT--TTTTAAAAGTCATTGAGCCTCTGATTAGAGGAGCATTGTT-
1 TTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TT-TTA
* * *
9804645 TATATTTTTCAAAGTCGTTGAGCCTCTGCTTAGAAGAGC
1 T-TACTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
9804684 CTTAATCAAA
Statistics
Matches: 135, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
40 3 0.02
41 31 0.23
42 57 0.42
43 9 0.07
44 5 0.04
45 30 0.22
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.40
Consensus pattern (43 bp):
TTACTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTTA
Found at i:9804575 original size:41 final size:41
Alignment explanation
Indices: 9804374--9804638 Score: 236
Period size: 42 Copynumber: 6.4 Consensus size: 41
9804364 AAGTTAAGGT
* * * *
9804374 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTGTGAT
1 GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTTGTTAA
* *
9804415 GCCTCT-ATTTAGAGG-GACAATTTACTTTTCAAA--AGTTAA
1 GCCTCTGA-TTAGAGGAG-CCATTTACTTTTCAAAGTTGTTAA
* * *
9804454 GCTTCTGATTATGA-GAGCCATTTACTTTTCAAAAGTCGTTGA
1 GCCTCTGATTA-GAGGAGCCATTTACTTTTC-AAAGTTGTTAA
* ** *
9804496 GCCTCTGATTATAGGAGTTTTAGTTA-TTTTCAAAGTTGTTAA
1 GCCTCTGATTAGAGGAG--CCATTTACTTTTCAAAGTTGTTAA
* *
9804538 GCTTCTGATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGA
1 GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTTGTTAA
* * * ** *
9804579 GCCTTTGATTAGAGGAGCCATTTATTTTTTAAAAGTCATTGA
1 GCCTCTGATTAGAGGAGCCATTTA-CTTTTCAAAGTTGTTAA
9804621 GCCTCTGATTAGAGGAGC
1 GCCTCTGATTAGAGGAGC
9804639 ATTGTTTATA
Statistics
Matches: 183, Mismatches: 28, Indels: 25
0.78 0.12 0.11
Matches are distributed among these distances:
39 24 0.13
40 12 0.07
41 67 0.37
42 71 0.39
43 5 0.03
44 4 0.02
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.38
Consensus pattern (41 bp):
GCCTCTGATTAGAGGAGCCATTTACTTTTCAAAGTTGTTAA
Found at i:9804627 original size:125 final size:123
Alignment explanation
Indices: 9804399--9804637 Score: 306
Period size: 125 Copynumber: 1.9 Consensus size: 123
9804389 AGCAATTTAC
*
9804399 TTTTCAAAGTTGTGATGCCTCTATTTAGAGGGACAATTTACTTTTCAAAAGTTAAGCTTCTGATT
1 TTTTCAAAGTTGTGAAGCCTCTATTTAGAGGGACAATTTACTTTTCAAAAGTTAAGCTTCTGATT
* *
9804464 ATGAGAGCCATTTACTTTTCAAAAGTCGTTGAGCCTCTGATTATAGGAGTTTTAGTTA
66 ATGAGAGCCATTTACTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGTTTTAGTTA
* * * * *
9804522 TTTTCAAAGTTGTTAAGCTTCTGA-TTAGA-GGAGCCATTTACTTTTCAAAGTTGTTGAGCCTT-
1 TTTTCAAAGTTGTGAAGCCTCT-ATTTAGAGGGA-CAATTTACTTTTCAAA--AGTTAAG-CTTC
* *
9804584 TGATTA-GAGGAGCCATTTATTTTTTAAAAGTCATTGAGCCTCTGATTAGAGGAG
61 TGATTATGA-GAGCCATTTACTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAG
9804638 CATTGTTTAT
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
122 3 0.03
123 39 0.39
124 3 0.03
125 52 0.52
126 3 0.03
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (123 bp):
TTTTCAAAGTTGTGAAGCCTCTATTTAGAGGGACAATTTACTTTTCAAAAGTTAAGCTTCTGATT
ATGAGAGCCATTTACTTTTCAAAAGTCATTGAGCCTCTGATTAGAGGAGTTTTAGTTA
Found at i:9804628 original size:83 final size:83
Alignment explanation
Indices: 9804340--9804683 Score: 285
Period size: 83 Copynumber: 4.1 Consensus size: 83
9804330 GGTGTTCTAT
* **** * *
9804340 TTAGATGAGCAATTTACTTTTTAAAAGTTAAGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCA
1 TTAGAGGAGCAATTTACTTTTTAAAAGTTATTAAGCCTCTGATTAGAGGAGCCATTTACTTTTCA
9804405 AAGTTG-TGATGCCTCT-A
66 AAGTTGTTGA-GCCTCTGA
* *
9804422 TTTAGAGG-GACAATTTACTTTTCAAAAG---TTAAGCTTCTGATTATGA-GAGCCATTTACTTT
1 -TTAGAGGAG-CAATTTACTTTTTAAAAGTTATTAAGCCTCTGATTA-GAGGAGCCATTTACTTT
*
9804482 TCAAAAGTCGTTGAGCCTCTGA
63 TC-AAAGTTGTTGAGCCTCTGA
* * * * * *
9804504 TTATAGGAG--TTTTAGTTATTTTCAAAGTTGTTAAGCTTCTGATTAGAGGAGCCATTTACTTTT
1 TTAGAGGAGCAATTTA-CT-TTTTAAAAGTTATTAAGCCTCTGATTAGAGGAGCCATTTACTTTT
*
9804567 CAAAGTTGTTGAGCCTTTGA
64 CAAAGTTGTTGAGCCTCTGA
* * * * *
9804587 TTAGAGGAGCCATTTATTTTTTAAAAGTCATTGAGCCTCTGATTAGAGGAG-CATTGTTTATATT
1 TTAGAGGAGCAATTTACTTTTTAAAAGTTATTAAGCCTCTGATTAGAGGAGCCA----TT-TACT
* *
9804651 TTTCAAAGTCGTTGAGCCTCTGC
61 TTTCAAAGTTGTTGAGCCTCTGA
*
9804674 TTAGAAGAGC
1 TTAGAGGAGC
9804684 CTTAATCAAA
Statistics
Matches: 213, Mismatches: 29, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
79 4 0.02
80 25 0.12
81 27 0.13
82 8 0.04
83 78 0.37
84 33 0.15
85 4 0.02
86 2 0.01
87 32 0.15
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (83 bp):
TTAGAGGAGCAATTTACTTTTTAAAAGTTATTAAGCCTCTGATTAGAGGAGCCATTTACTTTTCA
AAGTTGTTGAGCCTCTGA
Found at i:9804893 original size:14 final size:13
Alignment explanation
Indices: 9804870--9804910 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
9804860 CCATTTTTGC
*
9804870 TTTTTATTTTGTA
1 TTTTTATTTTATA
9804883 TTTTATATTTTATTA
1 TTTT-TATTTTA-TA
9804898 TTTTTATTTTATA
1 TTTTTATTTTATA
9804911 ATATATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 6 0.24
14 13 0.52
15 6 0.24
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TTTTTATTTTATA
Found at i:9804949 original size:7 final size:7
Alignment explanation
Indices: 9804932--9804973 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
9804922 CCTTTGTATC
9804932 TTATGTAT
1 TTAT-TAT
9804940 TTATTAT
1 TTATTAT
9804947 TTATTTAT
1 TTA-TTAT
9804955 TTATTA-
1 TTATTAT
*
9804961 TTACTAT
1 TTATTAT
9804968 TTATTA
1 TTATTA
9804974 ATATATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 5 0.17
7 14 0.47
8 11 0.37
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (7 bp):
TTATTAT
Found at i:9805081 original size:26 final size:26
Alignment explanation
Indices: 9805028--9805089 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
9805018 ATATTTTTTC
* *
9805028 ATTTATCTAGTTATAAATTTATTATT
1 ATTTATCTATTTATAAATTTAATATT
*
9805054 ATTTATCTATTTATATATTATAAT-TT
1 ATTTATCTATTTATAAATT-TAATATT
*
9805080 ATCTAT-TATT
1 ATTTATCTATT
9805090 ATTTTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 4 0.13
26 24 0.77
27 3 0.10
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTATCTATTTATAAATTTAATATT
Found at i:9805156 original size:20 final size:21
Alignment explanation
Indices: 9805013--9805156 Score: 114
Period size: 20 Copynumber: 6.6 Consensus size: 21
9805003 TTTTTGTTAA
* *
9805013 TATTTATATTTTTTCATTTATC
1 TATTAATA-TTTTTAATTTATC
*
9805035 TAGTTATAAATTTATTATTATTTATC
1 TA-TTA-ATATTT-TTA--ATTTATC
* *
9805061 TATTTATATATTATAATTTATC
1 TATTAATAT-TTTTAATTTATC
*
9805083 TATTATTATTTTTAATTTATC
1 TATTAATATTTTTAATTTATC
* *
9805104 TGTTAATA-TTTTGATTTATC
1 TATTAATATTTTTAATTTATC
*
9805124 TGATT-ATTTTTTTAA-TTATC
1 T-ATTAATATTTTTAATTTATC
9805144 TATTAATATTTTT
1 TATTAATATTTTT
9805157 TATTGGATTT
Statistics
Matches: 97, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.03
20 27 0.28
21 24 0.25
22 16 0.16
23 5 0.05
24 9 0.09
25 4 0.04
26 9 0.09
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (21 bp):
TATTAATATTTTTAATTTATC
Found at i:9805157 original size:21 final size:22
Alignment explanation
Indices: 9805013--9805158 Score: 115
Period size: 21 Copynumber: 6.7 Consensus size: 22
9805003 TTTTTGTTAA
* *
9805013 TATTTATATTTTTTCATTTATC
1 TATTAATATTTTTTAATTTATC
* *
9805035 TAGTTATAAATTTATTATTATTTATC
1 TA-TTA-ATATTT-TT-TAATTTATC
* * *
9805061 TATTTATATATTATAATTTATC
1 TATTAATATTTTTTAATTTATC
*
9805083 TATTATTA-TTTTTAATTTATC
1 TATTAATATTTTTTAATTTATC
* *
9805104 TGTTAATA--TTTTGATTTATC
1 TATTAATATTTTTTAATTTATC
9805124 TGATT-AT-TTTTTTAA-TTATC
1 T-ATTAATATTTTTTAATTTATC
9805144 TATTAATATTTTTTA
1 TATTAATATTTTTTA
9805159 TTGGATTTTT
Statistics
Matches: 98, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
19 3 0.03
20 22 0.22
21 31 0.32
22 16 0.16
23 3 0.03
24 9 0.09
25 4 0.04
26 10 0.10
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (22 bp):
TATTAATATTTTTTAATTTATC
Found at i:9805996 original size:3 final size:3
Alignment explanation
Indices: 9805990--9806016 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
9805980 GTTTTTTTTC
9805990 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
9806017 TATTGATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:9806069 original size:10 final size:10
Alignment explanation
Indices: 9806054--9806117 Score: 62
Period size: 10 Copynumber: 6.3 Consensus size: 10
9806044 TTTTTTTATT
9806054 TTTATTTTTA
1 TTTATTTTTA
9806064 TTTATTTTCT-
1 TTTATTTT-TA
9806074 TTTATTTTTA
1 TTTATTTTTA
9806084 TTTTCATTTTTA
1 -TTT-ATTTTTA
*
9806096 TATTTTTTTTA
1 T-TTATTTTTA
9806107 -TT-TTTTTA
1 TTTATTTTTA
9806115 TTT
1 TTT
9806118 TCTTTAAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
8 6 0.13
9 5 0.11
10 16 0.34
11 11 0.23
12 9 0.19
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:9806076 original size:20 final size:19
Alignment explanation
Indices: 9806042--9806118 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 19
9806032 ATTTGTTTAA
*
9806042 TATTTTTTTATTTTTATTTT
1 TATTTATTT-TTTTTATTTT
9806062 TATTTATTTTCTTTTATTTT
1 TATTTATTTT-TTTTATTTT
*
9806082 TATTT-TCATTTTTATATTTT
1 TATTTAT--TTTTTTTATTTT
9806102 T-TTTA-TTTTTTTATTTT
1 TATTTATTTTTTTTATTTT
9806119 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
17 11 0.22
19 5 0.10
20 31 0.62
21 3 0.06
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (19 bp):
TATTTATTTTTTTTATTTT
Found at i:9806080 original size:26 final size:26
Alignment explanation
Indices: 9806047--9806122 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
9806037 TTTAATATTT
9806047 TTTTATTTTTATTTTTATTTATTTTC
1 TTTTATTTTTATTTTTATTTATTTTC
* *
9806073 TTTTATTTTTATTTTCATTT-TTAT-
1 TTTTATTTTTATTTTTATTTATTTTC
*
9806097 ATTT-TTTTTA-TTTT-TTTATTTTC
1 TTTTATTTTTATTTTTATTTATTTTC
9806120 TTT
1 TTT
9806123 AAATAAAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.07
22 6 0.14
23 8 0.19
24 3 0.07
25 3 0.07
26 19 0.45
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTATTTTTATTTTTATTTATTTTC
Found at i:9806086 original size:32 final size:29
Alignment explanation
Indices: 9806044--9806111 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 29
9806034 TTGTTTAATA
*
9806044 TTTTTTTATTTTTATTTT--TATTTAT-T
1 TTTTTTTATTTTTATTTTCATTTTTATAT
*
9806070 TTCTTTTATTTTTATTTTCATTTTTATAT
1 TTTTTTTATTTTTATTTTCATTTTTATAT
9806099 TTTTTTTATTTTT
1 TTTTTTTATTTTT
9806112 TTATTTTCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.47
28 6 0.17
29 13 0.36
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (29 bp):
TTTTTTTATTTTTATTTTCATTTTTATAT
Found at i:9806118 original size:6 final size:6
Alignment explanation
Indices: 9806046--9806111 Score: 80
Period size: 6 Copynumber: 10.8 Consensus size: 6
9806036 GTTTAATATT
* *
9806046 TTTTTA TTTTTA TTTTTA TTTATTT TCTTTTA TTTTTA TTTTCA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTT-TTA T-TTTTA TTTTTA TTTTTA TTTTTA
*
9806096 TATTT- TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTT
9806112 TTATTTTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
5 4 0.08
6 39 0.76
7 6 0.12
8 2 0.04
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:9806240 original size:30 final size:30
Alignment explanation
Indices: 9806152--9806248 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
9806142 AATTTTTGAG
*
9806152 AAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAA
* * ** *
9806182 ATAAGCTTTCCAAA--AAAAATATTT-TTGAAA
1 AAAAG--TT-GAAAGTATCAATTTTTCTTGAAA
9806212 AAAAGTTGAAAGTATCAATTTTTCTTGAAA
1 AAAAGTTGAAAGTATCAATTTTTCTTGAAA
*
9806242 ATAAGTT
1 AAAAGTT
9806249 TTCTAAAAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 12
0.67 0.16 0.16
Matches are distributed among these distances:
27 3 0.06
28 2 0.04
29 7 0.14
30 26 0.53
31 6 0.12
32 2 0.04
33 3 0.06
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.35
Consensus pattern (30 bp):
AAAAGTTGAAAGTATCAATTTTTCTTGAAA
Found at i:9806285 original size:58 final size:58
Alignment explanation
Indices: 9806135--9806409 Score: 367
Period size: 58 Copynumber: 4.7 Consensus size: 58
9806125 ATAAAATTCA
* * *
9806135 AAAAAAAAATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTC
*
9806193 AAAAAAAATATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
1 -AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
* * * *
9806252 TAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
*** * * *
9806310 AAAAATGGATTTTTGAGAAAAAATTGAAAGTATCAA-TTTTCCTCAAAATTAAAG-TTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAA-T-AAGTTTTC
9806368 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
1 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTC
9806410 CTGCACAAAA
Statistics
Matches: 190, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
57 10 0.05
58 120 0.63
59 26 0.14
60 34 0.18
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTC
Found at i:9807602 original size:25 final size:25
Alignment explanation
Indices: 9807531--9807604 Score: 64
Period size: 23 Copynumber: 3.1 Consensus size: 25
9807521 TTTTTAATTT
** *
9807531 TAAAAAATG-TCTTAATTGAAAATA
1 TAAAAAATGATCTTTGTTTAAAATA
* * **
9807555 TAATAAA-GAT-TATGTTTTTAATA
1 TAAAAAATGATCTTTGTTTAAAATA
9807578 TAAAAAATGATCTTTGTTTAAAATA
1 TAAAAAATGATCTTTGTTTAAAATA
9807603 TA
1 TA
9807605 TAAATAAAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
23 14 0.39
24 10 0.28
25 12 0.33
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (25 bp):
TAAAAAATGATCTTTGTTTAAAATA
Found at i:9807608 original size:47 final size:48
Alignment explanation
Indices: 9807515--9807608 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
9807505 TTGAACAAAA
*
9807515 ATTACGTTTTTAATTTTAAAAAATGTCTTAATTGAAAATATAATAAAG
1 ATTACGTTTTTAATTATAAAAAATGTCTTAATTGAAAATATAATAAAG
* ** *
9807563 ATTATGTTTTTAA-TATAAAAAATGATCTTTGTTTAAAATAT-ATAAA
1 ATTACGTTTTTAATTATAAAAAATG-TCTTAATTGAAAATATAATAAA
9807609 TAAAAAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
47 15 0.38
48 25 0.62
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (48 bp):
ATTACGTTTTTAATTATAAAAAATGTCTTAATTGAAAATATAATAAAG
Found at i:9814528 original size:2 final size:2
Alignment explanation
Indices: 9814521--9814567 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
9814511 TTGTTAAGAC
* * * *
9814521 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TG CA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9814563 TA TA T
1 TA TA T
9814568 TTATTCTCTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:9816346 original size:6 final size:6
Alignment explanation
Indices: 9816337--9816498 Score: 53
Period size: 6 Copynumber: 25.3 Consensus size: 6
9816327 ATTAAAAGGT
* *
9816337 AAATAA AAATAA AAATAAGA AAATAAA AAATCAA AGACTTAAA AAATGA
1 AAATAA AAATAA AAAT-A-A AAAT-AA AAAT-AA A-A-AT-AA AAATAA
* * * * * *
9816386 AAATGA AAATAA ATA-AA AAATGA AAATAA AAATGA AAA-AG AAATAG
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* * *
9816432 AAAT-A GAA-AA AAATCTA AAATAAA AAAGTAA AAACCGATA AAATAA
1 AAATAA AAATAA AAAT-AA AAAT-AA AAA-TAA AAA--TA-A AAATAA
* *
9816478 AAAGAA AATTAA AAATTAA AA
1 AAATAA AAATAA AAA-TAA AA
9816499 GATATATAAC
Statistics
Matches: 117, Mismatches: 26, Indels: 25
0.70 0.15 0.15
Matches are distributed among these distances:
5 12 0.10
6 56 0.48
7 30 0.26
8 11 0.09
9 8 0.07
ACGTcount: A:0.73, C:0.03, G:0.07, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:9816429 original size:17 final size:17
Alignment explanation
Indices: 9816378--9816442 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
9816368 CAAAGACTTA
*
9816378 AAAAATGAAAATGAAA-
1 AAAAATGAAAAAGAAAT
* *
9816394 ATAAATAAAAAATGAAAAT
1 AAAAATGAAAAA-G-AAAT
9816413 AAAAATGAAAAAGAAAT
1 AAAAATGAAAAAGAAAT
*
9816430 AGAAATAGAAAAA
1 AAAAAT-GAAAAA
9816443 AATCTAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.23
17 10 0.26
18 10 0.26
19 10 0.26
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (17 bp):
AAAAATGAAAAAGAAAT
Found at i:9824244 original size:59 final size:59
Alignment explanation
Indices: 9824172--9824296 Score: 214
Period size: 59 Copynumber: 2.1 Consensus size: 59
9824162 TAAGGTATGT
* *
9824172 GTCATTAGCATAACTAGTCAAGAAGCTATCATAAATGGTATAACATATAGCTTGGATTG
1 GTCATTAGCATAACTAGTCAAGAAGCTATCATAAATGGTAGAACATATAGCCTGGATTG
*
9824231 GTCATTAGCATAACTAGTCAAGAAGCTGTCATAAATGGTAGAACATATAGCCTGGATTG
1 GTCATTAGCATAACTAGTCAAGAAGCTATCATAAATGGTAGAACATATAGCCTGGATTG
9824290 GATCATT
1 G-TCATT
9824297 TATATAAGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
59 57 0.92
60 5 0.08
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (59 bp):
GTCATTAGCATAACTAGTCAAGAAGCTATCATAAATGGTAGAACATATAGCCTGGATTG
Found at i:9826937 original size:37 final size:37
Alignment explanation
Indices: 9826887--9826957 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
9826877 CTCTTCTATT
9826887 TTATCTCCTTTTTGTCCTCGATGTATAACTTAGACTC
1 TTATCTCCTTTTTGTCCTCGATGTATAACTTAGACTC
9826924 TTATCTCCTTTTTGTCCTCGATGTATAACTTAGA
1 TTATCTCCTTTTTGTCCTCGATGTATAACTTAGA
9826958 TTAACAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.20, C:0.23, G:0.11, T:0.46
Consensus pattern (37 bp):
TTATCTCCTTTTTGTCCTCGATGTATAACTTAGACTC
Found at i:9831184 original size:2 final size:2
Alignment explanation
Indices: 9831179--9831205 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9831169 TTATCAAATG
9831179 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9831206 AGATTTCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9831921 original size:9 final size:9
Alignment explanation
Indices: 9831909--9831943 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
9831899 ATTAAATTTA
9831909 TTTTTAATT
1 TTTTTAATT
9831918 TTTTTAACTT
1 TTTTTAA-TT
9831928 ATTTTTAATT
1 -TTTTTAATT
9831938 TTTTTA
1 TTTTTA
9831944 TTAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 13 0.54
10 4 0.17
11 7 0.29
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTTAATT
Found at i:9831924 original size:21 final size:21
Alignment explanation
Indices: 9831884--9831943 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 21
9831874 TCAATAATAC
* *
9831884 TATTTTTGTATTTTTATTAAATT
1 TATTTTT-AATTTTT-TTAAACT
9831907 TATTTTTAATTTTTTT-AACT
1 TATTTTTAATTTTTTTAAACT
9831927 TATTTTTAATTTTTTTA
1 TATTTTTAATTTTTTTA
9831944 TTAAATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 19 0.56
21 2 0.06
22 6 0.18
23 7 0.21
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (21 bp):
TATTTTTAATTTTTTTAAACT
Found at i:9833109 original size:17 final size:17
Alignment explanation
Indices: 9833082--9833146 Score: 60
Period size: 16 Copynumber: 3.8 Consensus size: 17
9833072 AACTTTACTT
* *
9833082 TTTTTAATTTTTGTTA-
1 TTTTTATTTTTTTTTAC
9833098 TTTTTATTTTTTTTTAC
1 TTTTTATTTTTTTTTAC
* *
9833115 TTTTTATTTAGTTTTTAAA
1 TTTTTATTT--TTTTTTAC
*
9833134 ATTTTATTTTTTT
1 TTTTTATTTTTTT
9833147 ATAAAATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
16 14 0.34
17 13 0.32
19 14 0.34
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTTTTTAC
Found at i:9833153 original size:18 final size:18
Alignment explanation
Indices: 9833116--9833153 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
9833106 TTTTTTTACT
9833116 TTTTATTTAGTTTTTAAAA
1 TTTTATTTA-TTTTTAAAA
9833135 TTTTATTT-TTTTATAAAA
1 TTTTATTTATTTT-TAAAA
9833153 T
1 T
9833154 AAATTTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 6 0.33
19 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTATTTATTTTTAAAA
Found at i:9833399 original size:25 final size:25
Alignment explanation
Indices: 9833371--9833424 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
9833361 CCCTCCTTTT
**
9833371 TTTTCATTTTTT-TTTTTTTTAAAGA
1 TTTTCATTTTTTAGGTTTTTTAAA-A
*
9833396 TTTTGATTTTTTAGGTTTTTTAAAA
1 TTTTCATTTTTTAGGTTTTTTAAAA
9833421 TTTT
1 TTTT
9833425 TTAAAACTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.70
Consensus pattern (25 bp):
TTTTCATTTTTTAGGTTTTTTAAAA
Found at i:9833399 original size:26 final size:26
Alignment explanation
Indices: 9833370--9833425 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
9833360 TCCCTCCTTT
**
9833370 TTTTTCATTTTTT-TTTTTTTTAAAGA
1 TTTTTCATTTTTTAGGTTTTTTAAA-A
*
9833396 -TTTTGATTTTTTAGGTTTTTTAAAA
1 TTTTTCATTTTTTAGGTTTTTTAAAA
9833421 TTTTT
1 TTTTT
9833426 TAAAACTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (26 bp):
TTTTTCATTTTTTAGGTTTTTTAAAA
Found at i:9834041 original size:23 final size:22
Alignment explanation
Indices: 9833980--9834058 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 22
9833970 CCTTCTCTAG
9833980 ATATA-TAAAAGAATATATTTTATT
1 ATATATTAAAAG-ATATA-TTTA-T
* *
9834004 ATTTATT-AAATATATATTTAT
1 ATATATTAAAAGATATATTTAT
9834025 ATATATGTAAAAGATAT-TTTAAT
1 ATATAT-TAAAAGATATATTT-AT
9834048 AATATATTAAA
1 -ATATATTAAA
9834059 CGTGATCATA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
21 6 0.13
22 8 0.17
23 18 0.39
24 13 0.28
25 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
ATATATTAAAAGATATATTTAT
Found at i:9834205 original size:7 final size:7
Alignment explanation
Indices: 9834193--9834221 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
9834183 GCATTCAAAA
9834193 ATTATCC
1 ATTATCC
9834200 ATTATCC
1 ATTATCC
9834207 ATTATCC
1 ATTATCC
9834214 ATTATCC
1 ATTATCC
9834221 A
1 A
9834222 CAACGTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTATCC
Found at i:9836573 original size:330 final size:329
Alignment explanation
Indices: 9835970--9836584 Score: 1000
Period size: 330 Copynumber: 1.9 Consensus size: 329
9835960 TTCATTGTAT
9835970 AAAATTTATTATTCTAAAGTAACTTATTAATTAATACCTTAGAACTCCCACTAACTATAAGGTTA
1 AAAATTTATTATTCTAAAGTAACTTATTAATTAATACCTTAGAACTCCCACTAACTATAAGGTTA
* * * *
9836035 CTTTCAATTAATAACATACAATAATTGAATTCATATAGACAAGTCTCACATAGCATGTTAAACAC
66 CTTTCAATCAATAACATACAATAATTGAATTCACATACACAAGTCTCACATAGCATGCTAAACAC
* *
9836100 ATAAACAAGTTCCATCAATAAACATACGTATTATTTATTAAACTATGTTCTCAATAAGTGTGCAT
131 ATAAACAAGTTCCATCAACAAACATACATATTATTTATTAAACTATGTTCTCAATAAGTGTGCAT
* * *
9836165 CACTTGTCTAGTGATTAAGATGGAATCCATAAATTCTTATGACAGTTTCGCATTCTTATTAGCCA
196 CACTTGTCTAGTGATTAAGATGAAATCCATAAATTCTTATGACAATTTCACATTCTTATTAGCCA
*
9836230 TCCACAGAGATCCAAGAATTTTATGAATGCCATTGTAGAGACTTATTCACAATCAAAATTTCATT
261 TCCACAAAGATCCAAGAATTTTATGAATGCCATTGTAGAGACTTATTCACAATCAAAATTTCATT
9836295 ATGC
326 ATGC
* * * *
9836299 AAAATTTATTATTCTGAAGTAACTTATTAATTAATACCTTAGTACTCTCACTAACTTTAAGGTTA
1 AAAATTTATTATTCTAAAGTAACTTATTAATTAATACCTTAGAACTCCCACTAACTATAAGGTTA
*
9836364 CTTTTCAATCAATAACATACAATAATTGAATTCACATACACAAGTCTCTCATAGCATGCTAAACA
66 C-TTTCAATCAATAACATACAATAATTGAATTCACATACACAAGTCTCACATAGCATGCTAAACA
*
9836429 CATAAACAAGTTCCATCAACAAACATACATATTATTTATTAAA-TAATGTTCTCAATAAGTGTGT
130 CATAAACAAGTTCCATCAACAAACATACATATTATTTATTAAACT-ATGTTCTCAATAAGTGTGC
* *
9836493 ATCACTTGTCTAGTGATTAGGATGAAATCCATGAATTCTTATGACAA-TTCTACATTCTTATTAG
194 ATCACTTGTCTAGTGATTAAGATGAAATCCATAAATTCTTATGACAATTTC-ACATTCTTATTAG
* * *
9836557 TCATTCATAAAGATCCAAGAATTTTATG
258 CCATCCACAAAGATCCAAGAATTTTATG
9836585 TGTGCCAGTA
Statistics
Matches: 262, Mismatches: 21, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
329 66 0.25
330 196 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (329 bp):
AAAATTTATTATTCTAAAGTAACTTATTAATTAATACCTTAGAACTCCCACTAACTATAAGGTTA
CTTTCAATCAATAACATACAATAATTGAATTCACATACACAAGTCTCACATAGCATGCTAAACAC
ATAAACAAGTTCCATCAACAAACATACATATTATTTATTAAACTATGTTCTCAATAAGTGTGCAT
CACTTGTCTAGTGATTAAGATGAAATCCATAAATTCTTATGACAATTTCACATTCTTATTAGCCA
TCCACAAAGATCCAAGAATTTTATGAATGCCATTGTAGAGACTTATTCACAATCAAAATTTCATT
ATGC
Found at i:9849368 original size:15 final size:15
Alignment explanation
Indices: 9849329--9849368 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
9849319 TATATATATG
*
9849329 AATTAAATATAATTT
1 AATTAAATTTAATTT
*
9849344 GATTAAATTTAATTT
1 AATTAAATTTAATTT
*
9849359 AATTATATTT
1 AATTAAATTT
9849369 TTTAATTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
AATTAAATTTAATTT
Found at i:9850367 original size:23 final size:24
Alignment explanation
Indices: 9850339--9850384 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
9850329 TATAATTAGT
*
9850339 ATTTTCATGAT-TTTTATTCTTAA
1 ATTTTCATGATGTTTTATCCTTAA
*
9850362 ATTTTCATTATGTTTTATCCTTA
1 ATTTTCATGATGTTTTATCCTTA
9850385 TTTTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.24, C:0.11, G:0.04, T:0.61
Consensus pattern (24 bp):
ATTTTCATGATGTTTTATCCTTAA
Found at i:9851850 original size:17 final size:18
Alignment explanation
Indices: 9851818--9851856 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
9851808 TTGAAAGTTT
* *
9851818 AAATTTTCTTTTATTTGA
1 AAATTTTCTATTATTTAA
9851836 AAATTTT-TATTATTTAA
1 AAATTTTCTATTATTTAA
9851853 AAAT
1 AAAT
9851857 ATTAAAATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
AAATTTTCTATTATTTAA
Found at i:9854157 original size:16 final size:16
Alignment explanation
Indices: 9854126--9854159 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9854116 ACGATTGATA
*
9854126 ATGATGATTTATAATG
1 ATGATGATTTACAATG
*
9854142 ATGATGATTTGCAATG
1 ATGATGATTTACAATG
9854158 AT
1 AT
9854160 TTTTAAAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (16 bp):
ATGATGATTTACAATG
Found at i:9855559 original size:32 final size:28
Alignment explanation
Indices: 9855495--9855557 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 28
9855485 CTTCAATGAC
9855495 TTAATTATGATTATCTTTAATGAATTTA
1 TTAATTATGATTATCTTTAATGAATTTA
9855523 TTAATTATGATTAT-TTTGAATGAATTTA
1 TTAATTATGATTATCTTT-AATGAATTTA
*
9855551 TTTATTA
1 TTAATTA
9855558 ATGTAAACTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 3 0.09
28 30 0.91
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (28 bp):
TTAATTATGATTATCTTTAATGAATTTA
Found at i:9857029 original size:51 final size:52
Alignment explanation
Indices: 9856969--9857073 Score: 135
Period size: 52 Copynumber: 2.0 Consensus size: 52
9856959 TAAATTTTAT
*
9856969 TTAAAATTTTATT-AAAGGTATTTCAAT-AACTCACTTTTAATA-TTTTAAGAA
1 TTAAAATTTTATTAAAAGATATTTCAATCAA-TCACTTTTAATAGTTTTAA-AA
* * *
9857020 TTAAAATTTTGTTAAAAGATATTTTAATCAATTACTTTTAATAGTTTTAAAA
1 TTAAAATTTTATTAAAAGATATTTCAATCAATCACTTTTAATAGTTTTAAAA
9857072 TT
1 TT
9857074 TAAACACACA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
51 12 0.26
52 27 0.57
53 8 0.17
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.48
Consensus pattern (52 bp):
TTAAAATTTTATTAAAAGATATTTCAATCAATCACTTTTAATAGTTTTAAAA
Found at i:9857094 original size:2 final size:2
Alignment explanation
Indices: 9857089--9857118 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9857079 ACACACACAC
*
9857089 AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9857119 CTATCTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.