Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 70 of 109
Found at i:13918678 original size:21 final size:20
Alignment explanation
Indices: 13918642--13918681 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
13918632 AATCTTTTTT
13918642 AATCTTGATAATTCTTGATC
1 AATCTTGATAATTCTTGATC
*
13918662 AATCTTGAATGATTCTTGAT
1 AATCTTG-ATAATTCTTGAT
13918682 GCATTAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (20 bp):
AATCTTGATAATTCTTGATC
Found at i:13921626 original size:16 final size:17
Alignment explanation
Indices: 13921601--13921642 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
13921591 TTTCATGCTA
13921601 TTTAAATTTT-ATGTTC
1 TTTAAATTTTAATGTTC
*
13921617 TTTTAATTTTAATGTTC
1 TTTAAATTTTAATGTTC
13921634 TTTAAATTT
1 TTTAAATTT
13921643 ATTTTTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTAAATTTTAATGTTC
Found at i:13922382 original size:18 final size:17
Alignment explanation
Indices: 13922350--13922399 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
13922340 CTTGGATTTG
*
13922350 TTTACCTTTTTGTTTAC
1 TTTACTTTTTTGTTTAC
**
13922367 TTTACTTTTATTGTTTTG
1 TTTACTTTT-TTGTTTAC
13922385 TTTACTTTATTTGTT
1 TTTACTTT-TTTGTT
13922400 GTTAGATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 8 0.29
18 19 0.68
19 1 0.04
ACGTcount: A:0.12, C:0.10, G:0.08, T:0.70
Consensus pattern (17 bp):
TTTACTTTTTTGTTTAC
Found at i:13928334 original size:41 final size:42
Alignment explanation
Indices: 13928288--13928378 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
13928278 ATTTATATAT
* *
13928288 ATAATAGATGA-CATTTG-AGAAAGTAAAT-ATCGCCTATTATC
1 ATAATAGAT-ATCATTTGAAAAAAGTAAATAAT-ACCTATTATC
*
13928329 ATAATAGATATCATTTGAAAAAAGTAAATAATATCTATTATC
1 ATAATAGATATCATTTGAAAAAAGTAAATAATACCTATTATC
13928371 ATAATAGA
1 ATAATAGA
13928379 ATATATAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
40 1 0.02
41 15 0.34
42 26 0.59
43 2 0.05
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (42 bp):
ATAATAGATATCATTTGAAAAAAGTAAATAATACCTATTATC
Found at i:13929529 original size:2 final size:2
Alignment explanation
Indices: 13929522--13929550 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13929512 TAATTTGTTA
13929522 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13929551 AAACCAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13931839 original size:24 final size:24
Alignment explanation
Indices: 13931807--13931854 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
13931797 TGAAACACTA
*
13931807 GGAACTCATGACTATTCATTAGTG
1 GGAACTCATGACTATTCACTAGTG
* *
13931831 GGAAGTCATGATTATTCACTAGTG
1 GGAACTCATGACTATTCACTAGTG
13931855 AGACCACAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (24 bp):
GGAACTCATGACTATTCACTAGTG
Found at i:13932973 original size:2 final size:2
Alignment explanation
Indices: 13932966--13932990 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
13932956 CATATGTATA
13932966 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
13932991 ATATCCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:13943129 original size:21 final size:21
Alignment explanation
Indices: 13943105--13943149 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
13943095 TTTAGAGTTA
*
13943105 AGGATTTAATGTTTAAGATTT
1 AGGATTTAAAGTTTAAGATTT
*
13943126 AGGATTTAAAGTTTAAGGTTT
1 AGGATTTAAAGTTTAAGATTT
13943147 AGG
1 AGG
13943150 GTTTTGGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.42
Consensus pattern (21 bp):
AGGATTTAAAGTTTAAGATTT
Found at i:13943183 original size:14 final size:14
Alignment explanation
Indices: 13943070--13943183 Score: 51
Period size: 14 Copynumber: 8.4 Consensus size: 14
13943060 AAGGGTTAGT
*
13943070 TTTAGAGTTTGGGG
1 TTTAGAGTTTAGGG
*
13943084 TTT-G-GTTT-GAG
1 TTTAGAGTTTAGGG
* *
13943095 TTTAGAGTTAAGGA
1 TTTAGAGTTTAGGG
* *
13943109 TTTA-ATGTTTAAGA
1 TTTAGA-GTTTAGGG
**
13943123 TTTAG-GATTTAAAG
1 TTTAGAG-TTTAGGG
13943137 TTTA-AGGTTTAGGG
1 TTTAGA-GTTTAGGG
* * * *
13943151 TTTTGGGGTTAGGT
1 TTTAGAGTTTAGGG
13943165 TTTAGAGTTTAGGG
1 TTTAGAGTTTAGGG
13943179 TTTAG
1 TTTAG
13943184 TTCAAGTTTA
Statistics
Matches: 73, Mismatches: 18, Indels: 18
0.67 0.17 0.17
Matches are distributed among these distances:
11 5 0.07
12 5 0.07
13 6 0.08
14 56 0.77
15 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.46
Consensus pattern (14 bp):
TTTAGAGTTTAGGG
Found at i:13943199 original size:7 final size:7
Alignment explanation
Indices: 13943136--13943183 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
13943126 AGGATTTAAA
*
13943136 GTTTAAG
1 GTTTAGG
13943143 GTTTAGG
1 GTTTAGG
*
13943150 GTTTTGG
1 GTTTAGG
*
13943157 GGTTAGG
1 GTTTAGG
* *
13943164 TTTTAGA
1 GTTTAGG
13943171 GTTTAGG
1 GTTTAGG
13943178 GTTTAG
1 GTTTAG
13943184 TTCAAGTTTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:13947321 original size:21 final size:21
Alignment explanation
Indices: 13947275--13947327 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
13947265 ACATGTTTTT
*
13947275 AAAATTTTTGAAAATAAAAAA
1 AAAATTTTTCAAAATAAAAAA
*
13947296 TAAATTTTTCAAAA-AAAATAA
1 AAAATTTTTCAAAATAAAA-AA
13947317 AAAATATTTTC
1 AAAAT-TTTTC
13947328 TATAACCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.15
21 18 0.67
22 5 0.19
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (21 bp):
AAAATTTTTCAAAATAAAAAA
Found at i:13947374 original size:13 final size:13
Alignment explanation
Indices: 13947356--13947381 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13947346 AATTTTTTTT
13947356 TGGTAAATAAATA
1 TGGTAAATAAATA
13947369 TGGTAAATAAATA
1 TGGTAAATAAATA
13947382 AATAAATTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
TGGTAAATAAATA
Found at i:13947904 original size:44 final size:44
Alignment explanation
Indices: 13947850--13947937 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
13947840 ATAAAGTGAT
* *
13947850 GAATAAGTATCATTCCTTCGAGGATTGAGTTAATCCTAGTACTA
1 GAATAAGTATCATTCCTCCAAGGATTGAGTTAATCCTAGTACTA
* *
13947894 GAATACGTATCGTTCCTCCAAGGATTGAGTTAATCCTAGTACTA
1 GAATAAGTATCATTCCTCCAAGGATTGAGTTAATCCTAGTACTA
13947938 AGTACCAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (44 bp):
GAATAAGTATCATTCCTCCAAGGATTGAGTTAATCCTAGTACTA
Found at i:13951134 original size:21 final size:20
Alignment explanation
Indices: 13951101--13951142 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
13951091 GTGAAGAAGC
*
13951101 AAAAATGCAAGATTGAAAAA
1 AAAAATACAAGATTGAAAAA
13951121 AAAAATACAGAGATTGAGAAAA
1 AAAAATACA-AGATTGA-AAAA
13951143 TGAGGCAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.64, C:0.05, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAAATACAAGATTGAAAAA
Found at i:13953820 original size:39 final size:38
Alignment explanation
Indices: 13953761--13953834 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
13953751 TCAATTCTCA
* *
13953761 GTTGAGGAAAACTTTTCAAAGAATGGATTTCGATCCTTG
1 GTTGAGGAAAACTTTTCAAAG-ATAGATTTCAATCCTTG
13953800 GTTGAGGAAAA-TTTTACAAAGATAGATTTCAATCC
1 GTTGAGGAAAACTTTT-CAAAGATAGATTTCAATCC
13953835 CTAAGGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 16 0.50
39 16 0.50
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (38 bp):
GTTGAGGAAAACTTTTCAAAGATAGATTTCAATCCTTG
Found at i:13954294 original size:41 final size:41
Alignment explanation
Indices: 13954249--13954385 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 41
13954239 AGGAATTTTC
** *
13954249 TAAAATTTCATGGTCTCTAATTAAAGGAACTTTTTAAATTT
1 TAAAATTTCATTATCTCTAATTAAAGGAGCTTTTTAAATTT
* * *
13954290 TAAAATTTCATTACCACTAGA-TAGAGGAGCTTTTTCAAATTT
1 TAAAATTTCATTATCTCTA-ATTAAAGGAGCTTTTT-AAATTT
* * *
13954332 TAAAGTTTCGTTATCT-TAAGTTAAAGGAGCTTTTATAAATTA
1 TAAAATTTCATTATCTCTAA-TTAAAGGAGCTTTT-TAAATTT
*
13954374 CAAAATTTCATT
1 TAAAATTTCATT
13954386 GTTTTTGGTT
Statistics
Matches: 76, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 29 0.38
42 45 0.59
43 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (41 bp):
TAAAATTTCATTATCTCTAATTAAAGGAGCTTTTTAAATTT
Found at i:13959002 original size:13 final size:12
Alignment explanation
Indices: 13958972--13959005 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
13958962 TTAAACTTAG
13958972 TTTTTT-TTTAT
1 TTTTTTCTTTAT
13958983 TTTTTTCTTTAT
1 TTTTTTCTTTAT
13958995 TTTCTTTCTTT
1 TTT-TTTCTTT
13959006 GCTATTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 6 0.29
12 8 0.38
13 7 0.33
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTCTTTAT
Found at i:13959039 original size:13 final size:13
Alignment explanation
Indices: 13959023--13959056 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
13959013 CACCACTTTA
13959023 TTTTTTTTTTCCT
1 TTTTTTTTTTCCT
*
13959036 TTTTCTTTTTCCT
1 TTTTTTTTTTCCT
13959049 TTCTTTTT
1 TT-TTTTT
13959057 CCACTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTTTTTCCT
Found at i:13961902 original size:63 final size:63
Alignment explanation
Indices: 13961803--13961928 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
13961793 GCTCAGTTAC
13961803 ATCATAAAGATTGGACTCCTACATGAAAAGTAAAATAAAAACTAAACAAGAACATAATAACTA
1 ATCATAAAGATTGGACTCCTACATGAAAAGTAAAATAAAAACTAAACAAGAACATAATAACTA
13961866 ATCATAAAGATTGGACTTCC-ACATGAAAAGTAAAATAAAAACTAAACAAGAACATAATAACTA
1 ATCATAAAGATTGGAC-TCCTACATGAAAAGTAAAATAAAAACTAAACAAGAACATAATAACTA
13961929 TGTATACTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
63 59 0.95
64 3 0.05
ACGTcount: A:0.56, C:0.14, G:0.10, T:0.21
Consensus pattern (63 bp):
ATCATAAAGATTGGACTCCTACATGAAAAGTAAAATAAAAACTAAACAAGAACATAATAACTA
Found at i:13967743 original size:17 final size:17
Alignment explanation
Indices: 13967717--13967749 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13967707 AATATTTTTG
*
13967717 AAATTTCACCTAAATAC
1 AAATTCCACCTAAATAC
13967734 AAATTCCACCTAAATA
1 AAATTCCACCTAAATA
13967750 TAAGAGAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATTCCACCTAAATAC
Found at i:13970564 original size:28 final size:28
Alignment explanation
Indices: 13970532--13970585 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
13970522 TGGCACACCG
13970532 CTTTGCTC-TTTGTTTTCCATTTTTTTAC
1 CTTTG-TCATTTGTTTTCCATTTTTTTAC
**
13970560 CTTTGTCATTTGTTTTCTTTTTTTTT
1 CTTTGTCATTTGTTTTCCATTTTTTT
13970586 TAATTTCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.09
28 21 0.91
ACGTcount: A:0.06, C:0.17, G:0.07, T:0.70
Consensus pattern (28 bp):
CTTTGTCATTTGTTTTCCATTTTTTTAC
Found at i:13970793 original size:14 final size:14
Alignment explanation
Indices: 13970776--13970807 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
13970766 TTTTGTTGTC
13970776 TTTTTTTTAGTTTT
1 TTTTTTTTAGTTTT
13970790 TTTTTTTTAGTTTT
1 TTTTTTTTAGTTTT
13970804 TTTT
1 TTTT
13970808 AAATGCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.88
Consensus pattern (14 bp):
TTTTTTTTAGTTTT
Found at i:13987844 original size:14 final size:14
Alignment explanation
Indices: 13987825--13987853 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13987815 GTGTTTATTG
13987825 TCATCTGAGTTTCA
1 TCATCTGAGTTTCA
13987839 TCATCTGAGTTTCA
1 TCATCTGAGTTTCA
13987853 T
1 T
13987854 TTTGAACTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.45
Consensus pattern (14 bp):
TCATCTGAGTTTCA
Found at i:14001039 original size:15 final size:16
Alignment explanation
Indices: 14001013--14001042 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14001003 CAATTATTTT
14001013 AGTTTATTTATAATTG
1 AGTTTATTTATAATTG
14001029 AGTTT-TTTATAATT
1 AGTTTATTTATAATT
14001043 AATTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (16 bp):
AGTTTATTTATAATTG
Found at i:14001194 original size:17 final size:17
Alignment explanation
Indices: 14001172--14001211 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
14001162 TTGATAAAAA
14001172 ATTATTATAT-CATGTAT
1 ATTATTA-ATGCATGTAT
14001189 ATTATTAATGCATGTAT
1 ATTATTAATGCATGTAT
14001206 ATTATT
1 ATTATT
14001212 TCAAGAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (17 bp):
ATTATTAATGCATGTAT
Found at i:14001827 original size:18 final size:20
Alignment explanation
Indices: 14001790--14001827 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
14001780 TTTTCCTTTT
*
14001790 TTTTCGAAAATAAAATCAAA
1 TTTTCGAAAATAAAAACAAA
14001810 TTTT-GAAAA-AAAAACAAA
1 TTTTCGAAAATAAAAACAAA
14001828 AACAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (20 bp):
TTTTCGAAAATAAAAACAAA
Found at i:14002276 original size:19 final size:19
Alignment explanation
Indices: 14002252--14002288 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14002242 TAAGAGTTGG
14002252 TTTTAGGGTTTAGGATTTT
1 TTTTAGGGTTTAGGATTTT
* *
14002271 TTTTAGGTTTTATGATTT
1 TTTTAGGGTTTAGGATTT
14002289 AGGTTTTAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.22, T:0.62
Consensus pattern (19 bp):
TTTTAGGGTTTAGGATTTT
Found at i:14002303 original size:14 final size:14
Alignment explanation
Indices: 14002271--14002305 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14002261 TTAGGATTTT
*
14002271 TTTTAGGTTTTATG
1 TTTTAGGTTTTAAG
*
14002285 ATTTAGGTTTTAAG
1 TTTTAGGTTTTAAG
14002299 TTTTAGG
1 TTTTAGG
14002306 ATTTGGGGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (14 bp):
TTTTAGGTTTTAAG
Found at i:14002326 original size:17 final size:17
Alignment explanation
Indices: 14002304--14002337 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14002294 TTAAGTTTTA
*
14002304 GGATTTGGGGTTTCATG
1 GGATTTGGGGTATCATG
14002321 GGATTTGGGGTATCATG
1 GGATTTGGGGTATCATG
14002338 AAACTATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.41, T:0.38
Consensus pattern (17 bp):
GGATTTGGGGTATCATG
Found at i:14003956 original size:113 final size:112
Alignment explanation
Indices: 14003756--14003982 Score: 368
Period size: 113 Copynumber: 2.0 Consensus size: 112
14003746 TGAAGTTACT
* *
14003756 AAAATTTAAATTACTTAATGATTATGAGTCCTTAATATTGATAGATATTGATATTACCAAACTAT
1 AAAATTTAAATTACTTAAGGACTATGAGTCCTTAATATTGATAGATATTGATATTACCAAAC-AT
*
14003821 ATATATTCATATCCAATTACACACAAAATAAGAATATTTTCTTATAAG
65 ATATATTCATATCCAATTACACACAAAATAAGAATATTTTCTTACAAG
* *
14003869 AAAATTTAAATTACTTAGGGACTATGAGTCTTTAATATTGATAGATATTGATACTT-CCAAAC-T
1 AAAATTTAAATTACTTAAGGACTATGAGTCCTTAATATTGATAGATATTGATA-TTACCAAACAT
*
14003932 ATATATTCATATCTAATTACACACAAAATAAGAATATTTTCTTACAAG
65 ATATATTCATATCCAATTACACACAAAATAAGAATATTTTCTTACAAG
14003980 AAA
1 AAA
14003983 TTAAAAACTA
Statistics
Matches: 107, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
111 50 0.47
113 55 0.51
114 2 0.02
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (112 bp):
AAAATTTAAATTACTTAAGGACTATGAGTCCTTAATATTGATAGATATTGATATTACCAAACATA
TATATTCATATCCAATTACACACAAAATAAGAATATTTTCTTACAAG
Found at i:14004020 original size:113 final size:112
Alignment explanation
Indices: 14003789--14003996 Score: 287
Period size: 111 Copynumber: 1.9 Consensus size: 112
14003779 ATGAGTCCTT
14003789 AATATTGATAGATATTGATATTACCAAACTATATATATTCATATCCAATTACACACAAAATAAGA
1 AATATTGATAGATATTGATATTACCAAAC-ATATATATTCATATCCAATTACACACAAAATAAGA
* * * * * * **
14003854 ATATTTTCTTATAAGAAAATTTAAATTACTTAGGGACTATGAGTCTTT
65 ATATTTTCTTACAAGAAAATTAAAACTAATTAGGGACTATCAGTATAA
*
14003902 AATATTGATAGATATTGATACTT-CCAAAC-TATATATTCATATCTAATTACACACAAAATAAGA
1 AATATTGATAGATATTGATA-TTACCAAACATATATATTCATATCCAATTACACACAAAATAAGA
14003965 ATATTTTCTTACAAG-AAATTAAAAACTAATTA
65 ATATTTTCTTACAAGAAAATT-AAAACTAATTA
14003997 ATTGATTACA
Statistics
Matches: 88, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
110 5 0.06
111 55 0.62
113 26 0.30
114 2 0.02
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (112 bp):
AATATTGATAGATATTGATATTACCAAACATATATATTCATATCCAATTACACACAAAATAAGAA
TATTTTCTTACAAGAAAATTAAAACTAATTAGGGACTATCAGTATAA
Found at i:14006666 original size:6 final size:6
Alignment explanation
Indices: 14006635--14006728 Score: 75
Period size: 6 Copynumber: 15.7 Consensus size: 6
14006625 AGCCTAAAAT
* * * * *
14006635 TTTTAA TTGTAA -TTTGA TCTTAA TTTTGA TTTTGA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
* * * *
14006682 TTTTAA TTTTAA -TTTAGA TTTTTAA ATTCAT TTTTTA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTA-A -TTTTAA TTTTAA TTTTAA TTTTAA TTTT
14006729 GTGATTTATT
Statistics
Matches: 68, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
5 7 0.10
6 56 0.82
7 1 0.01
8 4 0.06
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:14007899 original size:14 final size:13
Alignment explanation
Indices: 14007837--14007963 Score: 69
Period size: 14 Copynumber: 9.3 Consensus size: 13
14007827 TCCTTTTTCT
*
14007837 TTTTTTCTTTTT-
1 TTTTTTATTTTTA
*
14007849 TTGTTTATTTTTTA
1 TTTTTTA-TTTTTA
* **
14007863 CTTTGAATTTTT-
1 TTTTTTATTTTTA
*
14007875 TTGTTTGATTTTTA
1 TT-TTTTATTTTTA
*
14007889 TTTTCTTATTTTAA
1 TTTT-TTATTTTTA
* *
14007903 TTTTCTATTTTGTT
1 TTTTTTATTTT-TA
*
14007917 TTTTTTATATATTA
1 TTTTTTAT-TTTTA
*
14007931 TTTTTATATTTATA
1 TTTTT-TATTTTTA
14007945 TTTTTATATTTATTA
1 TTTTT-TATTT-TTA
14007960 TTTT
1 TTTT
14007964 AAATGGTTGT
Statistics
Matches: 86, Mismatches: 20, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
12 6 0.07
13 26 0.30
14 43 0.50
15 11 0.13
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.76
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:14007920 original size:33 final size:32
Alignment explanation
Indices: 14007839--14007920 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 32
14007829 CTTTTTCTTT
*
14007839 TTTTCTTTTT-TTGTTTATTTTTTACTTTGAA
1 TTTTCTTTTTGTTTTTTATTTTTTACTTTGAA
* * *
14007870 TTTTTTTGTTTGATTTTTATTTTCTTA-TTTTAA
1 TTTTCTT-TTTGTTTTTTATTTT-TTACTTTGAA
14007903 TTTTCTATTTTGTTTTTT
1 TTTTCT-TTTTGTTTTTT
14007921 TTATATATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
31 6 0.15
32 3 0.07
33 28 0.68
34 4 0.10
ACGTcount: A:0.12, C:0.05, G:0.06, T:0.77
Consensus pattern (32 bp):
TTTTCTTTTTGTTTTTTATTTTTTACTTTGAA
Found at i:14007964 original size:14 final size:15
Alignment explanation
Indices: 14007916--14007963 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
14007906 TCTATTTTGT
* *
14007916 TTTTTTTATATATTA
1 TTTTTATATTTATTA
14007931 TTTTTATATTTA-TA
1 TTTTTATATTTATTA
14007945 TTTTTATATTTATTA
1 TTTTTATATTTATTA
14007960 TTTT
1 TTTT
14007964 AAATGGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTATATTTATTA
Found at i:14009502 original size:15 final size:14
Alignment explanation
Indices: 14009477--14009506 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14009467 ATTTTGCTTG
14009477 TAAATTTATATATA
1 TAAATTTATATATA
14009491 TAAATATTATATATA
1 TAAAT-TTATATATA
14009506 T
1 T
14009507 TATTTGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAAATTTATATATA
Found at i:14012765 original size:19 final size:19
Alignment explanation
Indices: 14012743--14012785 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
14012733 AAAGTGCAAG
*
14012743 AAAAAAGTAAAAAAAAAAA
1 AAAAAAGGAAAAAAAAAAA
* *
14012762 AAAAAAGGAGAAAAAGAAA
1 AAAAAAGGAAAAAAAAAAA
14012781 AAAAA
1 AAAAA
14012786 TTGGTGGGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (19 bp):
AAAAAAGGAAAAAAAAAAA
Found at i:14014248 original size:46 final size:45
Alignment explanation
Indices: 14014196--14014289 Score: 107
Period size: 46 Copynumber: 2.1 Consensus size: 45
14014186 AGCCAAAAAG
14014196 TTTTGAAAAAAAACCTTTGAAACTCTAGATGTGAATCTCTAAAATT
1 TTTTGAAAAAAAACCTTTGAAACTCTAGATGTGAAT-TCTAAAATT
* ** * * * * *
14014242 TTTTGAATATGAATCTTTGAAATTTTATATGTGAATTCTTAAATT
1 TTTTGAAAAAAAACCTTTGAAACTCTAGATGTGAATTCTAAAATT
14014287 TTT
1 TTT
14014290 CGAATGAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 11 0.28
46 29 0.73
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.45
Consensus pattern (45 bp):
TTTTGAAAAAAAACCTTTGAAACTCTAGATGTGAATTCTAAAATT
Found at i:14014302 original size:45 final size:45
Alignment explanation
Indices: 14014205--14014304 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
14014195 GTTTTGAAAA
* *
14014205 AAAACCTTTGAAACTCTAGATGTGAATCTCTAAAATTTTTTGAAT
1 AAAATCTTTGAAACTCTAGATGTGAATCTCTAAAATTTTTCGAAT
* * * * *
14014250 ATGAATCTTTGAAATTTTATATGTGAAT-TCTTAAATTTTTCGAAT
1 A-AAATCTTTGAAACTCTAGATGTGAATCTCTAAAATTTTTCGAAT
14014295 GAAAATCTTT
1 -AAAATCTTT
14014305 AATTTTGGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
45 23 0.51
46 22 0.49
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (45 bp):
AAAATCTTTGAAACTCTAGATGTGAATCTCTAAAATTTTTCGAAT
Found at i:14014686 original size:35 final size:35
Alignment explanation
Indices: 14014637--14014719 Score: 85
Period size: 35 Copynumber: 2.4 Consensus size: 35
14014627 GAGATATTGC
** ** *
14014637 AATTCTTGCAAATCTAAAAATTTTTACGAATATGA
1 AATTCTTGTGAATCTAAAAATTCATACGAACATGA
*** *
14014672 AATTCTTGTGAATCTTTGAATTCATACGAACCTGA
1 AATTCTTGTGAATCTAAAAATTCATACGAACATGA
14014707 AATTCTTGTGAAT
1 AATTCTTGTGAAT
14014720 TGAAAGTTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (35 bp):
AATTCTTGTGAATCTAAAAATTCATACGAACATGA
Found at i:14014795 original size:16 final size:16
Alignment explanation
Indices: 14014751--14014797 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
14014741 AGTTCTTATA
*
14014751 AAACTAAAATTCTTGC
1 AAACTAAAATTCTTAC
*
14014767 AAACATGAAATTCTTAC
1 AAAC-TAAAATTCTTAC
14014784 AAATCT-AAATTCTT
1 AAA-CTAAAATTCTT
14014798 GAGAATCTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 14 0.52
18 1 0.04
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (16 bp):
AAACTAAAATTCTTAC
Found at i:14014954 original size:18 final size:19
Alignment explanation
Indices: 14014935--14014971 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14014925 AATTTTACAA
*
14014935 TTCTTACGAATCTTGAAAT
1 TTCTTACAAATCTTGAAAT
*
14014954 TTTTTACAAATCTTGAAA
1 TTCTTACAAATCTTGAAA
14014972 CCTTGTGAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.43
Consensus pattern (19 bp):
TTCTTACAAATCTTGAAAT
Found at i:14015483 original size:29 final size:29
Alignment explanation
Indices: 14015428--14015483 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
14015418 AAGCCCAAAA
* *
14015428 ATTTTAATTGTAATTTGATCTTGATTTTG
1 ATTTTAATTGTAATTTAATCTTAATTTTG
*
14015457 ATTTTAATTTTAATTTTAAT-TTAATTT
1 ATTTTAATTGTAA-TTTAATCTTAATTT
14015484 AGATATAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 18 0.78
30 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (29 bp):
ATTTTAATTGTAATTTAATCTTAATTTTG
Found at i:14015495 original size:35 final size:35
Alignment explanation
Indices: 14015427--14015496 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
14015417 AAAGCCCAAA
* * *
14015427 AATTTTAATTGTAATTTGATCTTGATTTTGATTTT
1 AATTTTAATTGTAATTTAATCTTGATATAGATTTT
*
14015462 AATTTTAATTTTAATTTAAT-TTAGATATAGATTTT
1 AATTTTAATTGTAATTTAATCTT-GATATAGATTTT
14015497 TTAATTTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 2 0.07
35 28 0.93
ACGTcount: A:0.31, C:0.01, G:0.09, T:0.59
Consensus pattern (35 bp):
AATTTTAATTGTAATTTAATCTTGATATAGATTTT
Found at i:14015504 original size:6 final size:6
Alignment explanation
Indices: 14015427--14015483 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
14015417 AAAGCCCAAA
* * * * *
14015427 AATTTT AATTGT AA-TTT GATCTT GATTTT GATTTT AATTTT AATTTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT AATTTT
14015474 AA-TTT AATTT
1 AATTTT AATTT
14015484 AGATATAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
5 8 0.19
6 35 0.81
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (6 bp):
AATTTT
Found at i:14017059 original size:23 final size:23
Alignment explanation
Indices: 14017007--14017072 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
14016997 TAAATACTTG
14017007 ATTATATT-TAATTGCATGATAGT
1 ATTATATTATAATTGCATGATA-T
*
14017030 -TT-T-TTATTATTGCATGATAT
1 ATTATATTATAATTGCATGATAT
14017050 ATTATATTATAATTGCATGATAT
1 ATTATATTATAATTGCATGATAT
14017073 TATTTTGTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
20 3 0.08
21 15 0.41
22 3 0.08
23 16 0.43
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.52
Consensus pattern (23 bp):
ATTATATTATAATTGCATGATAT
Found at i:14017074 original size:21 final size:21
Alignment explanation
Indices: 14017007--14017075 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 21
14016997 TAAATACTTG
14017007 ATTATATT-TAATTGCATGAT
1 ATTATATTATAATTGCATGAT
* *
14017027 AGTT-TTTTATTATTGCATGATAT
1 A-TTATATTATAATTGCATG--AT
14017050 ATTATATTATAATTGCATGAT
1 ATTATATTATAATTGCATGAT
14017071 ATTAT
1 ATTAT
14017076 TTTGTATGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
20 4 0.10
21 18 0.45
22 2 0.05
23 16 0.40
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.52
Consensus pattern (21 bp):
ATTATATTATAATTGCATGAT
Found at i:14018693 original size:46 final size:45
Alignment explanation
Indices: 14018580--14018694 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 45
14018570 TAAACAAGAT
* * *
14018580 ACAACCAAAATATAAGTGATAAAGTTGCAATTGTAAGTAATAAAAC
1 ACAACCAAAATATAA-TGATAAAGTTGCAACTATAAATAATAAAAC
* ** *
14018626 ACAACCAAAATATAAATGATAAAGTTGCAACTATAAATAGTGGAAT
1 ACAACCAAAATAT-AATGATAAAGTTGCAACTATAAATAATAAAAC
*
14018672 TCAACCAAAATATAATCGATAAA
1 ACAACCAAAATATAAT-GATAAA
14018695 CCTAATGTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 3 0.05
46 54 0.92
47 2 0.03
ACGTcount: A:0.53, C:0.12, G:0.11, T:0.23
Consensus pattern (45 bp):
ACAACCAAAATATAATGATAAAGTTGCAACTATAAATAATAAAAC
Found at i:14022579 original size:26 final size:25
Alignment explanation
Indices: 14022550--14022609 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
14022540 ATTAATTATA
*
14022550 ATTAATATATTTTTATTAAAAAATAT
1 ATTAATATATATTTA-TAAAAAATAT
14022576 ATTAATATATATTTATAAAAAATAT
1 ATTAATATATATTTATAAAAAATAT
14022601 -TTAA-ATATA
1 ATTAATATATA
14022610 CAAAATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 5 0.15
24 4 0.12
25 10 0.30
26 14 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTAATATATATTTATAAAAAATAT
Found at i:14023321 original size:25 final size:25
Alignment explanation
Indices: 14023293--14023348 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 25
14023283 AATTCGTTTG
*
14023293 CTTTAATTTTAAATAAAATTTTAAT
1 CTTTAATTTTAAATAAAATCTTAAT
*
14023318 CTTTAA-TTTAAATAAACTCTTAAT
1 CTTTAATTTTAAATAAAATCTTAAT
*
14023342 TTTTAAT
1 CTTTAAT
14023349 ATTTTAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (25 bp):
CTTTAATTTTAAATAAAATCTTAAT
Found at i:14023549 original size:15 final size:15
Alignment explanation
Indices: 14023529--14023559 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14023519 CTACCTTCCC
*
14023529 TTCTTTGTTTTTCTT
1 TTCTTTCTTTTTCTT
14023544 TTCTTTCTTTTTCTT
1 TTCTTTCTTTTTCTT
14023559 T
1 T
14023560 CCCATAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (15 bp):
TTCTTTCTTTTTCTT
Found at i:14030880 original size:27 final size:27
Alignment explanation
Indices: 14030818--14030903 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 27
14030808 GCCAATTTCC
* * * * *
14030818 CAACCAACCCCTTCAAAACCATATTCC
1 CAACCAGCCCCTTCAAAACTAGAATCT
* *
14030845 CAGCTAGCCCCTTCAAAACTAGAATCT
1 CAACCAGCCCCTTCAAAACTAGAATCT
* *
14030872 CAACCAGCCCTTTCAAAACTAGAGTCT
1 CAACCAGCCCCTTCAAAACTAGAATCT
14030899 CAACC
1 CAACC
14030904 TACCCAACCT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.07, T:0.20
Consensus pattern (27 bp):
CAACCAGCCCCTTCAAAACTAGAATCT
Found at i:14035922 original size:39 final size:39
Alignment explanation
Indices: 14035868--14035950 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
14035858 GACTTCGAGC
* * *
14035868 TTGGAGGATCTGGTTGGATGTTTTGGGTTTGAAAGGGAG
1 TTGGAGGATCTGGTTGGATGTTTTGGATGTGAAAAGGAG
14035907 TTGGAGGATCTGGTTGGATGTTTTGGATGTGAAAAGGAG
1 TTGGAGGATCTGGTTGGATGTTTTGGATGTGAAAAGGAG
14035946 TTGGA
1 TTGGA
14035951 TGTTTTGGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.02, G:0.42, T:0.35
Consensus pattern (39 bp):
TTGGAGGATCTGGTTGGATGTTTTGGATGTGAAAAGGAG
Found at i:14035955 original size:26 final size:26
Alignment explanation
Indices: 14035919--14035973 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
14035909 GGAGGATCTG
14035919 GTTGGATGTTTTGGATGTGAAAAGGA
1 GTTGGATGTTTTGGATGTGAAAAGGA
*
14035945 GTTGGATGTTTTGGATGTGAAAGGGA
1 GTTGGATGTTTTGGATGTGAAAAGGA
14035971 GTT
1 GTT
14035974 TGAGAAGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.40, T:0.36
Consensus pattern (26 bp):
GTTGGATGTTTTGGATGTGAAAAGGA
Found at i:14045138 original size:12 final size:12
Alignment explanation
Indices: 14045102--14045141 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
14045092 ATCATAAAAC
14045102 AAATACTAGCAA
1 AAATACTAGCAA
* *
14045114 AAACACTA-AAA
1 AAATACTAGCAA
14045125 AAATACTAGCAA
1 AAATACTAGCAA
14045137 AAATA
1 AAATA
14045142 TCAAAGAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.65, C:0.15, G:0.05, T:0.15
Consensus pattern (12 bp):
AAATACTAGCAA
Found at i:14045187 original size:13 final size:13
Alignment explanation
Indices: 14045171--14045198 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14045161 TTTATCGAAT
14045171 ATTGTGGGCATCC
1 ATTGTGGGCATCC
14045184 ATTGTGGGCATCC
1 ATTGTGGGCATCC
14045197 AT
1 AT
14045199 AAAATTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (13 bp):
ATTGTGGGCATCC
Found at i:14048773 original size:17 final size:17
Alignment explanation
Indices: 14048748--14048780 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14048738 TTATGATTAA
14048748 TTTAGATTAAAATAATAT
1 TTTAGATTAAAA-AATAT
14048766 TTTA-ATTAAAAAATA
1 TTTAGATTAAAAAATA
14048781 AGAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TTTAGATTAAAAAATAT
Found at i:14048773 original size:27 final size:27
Alignment explanation
Indices: 14048721--14048774 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
14048711 ATTTTATATT
*
14048721 TTTAAATTAAAATTAATTTATGATTAA
1 TTTAAATTAAAATTAATTTATAATTAA
* *
14048748 TTTAGATTAAAA-TAATATTTTAATTAA
1 TTTAAATTAAAATTAAT-TTATAATTAA
14048775 AAAATAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (27 bp):
TTTAAATTAAAATTAATTTATAATTAA
Found at i:14056968 original size:4 final size:4
Alignment explanation
Indices: 14056959--14057016 Score: 50
Period size: 4 Copynumber: 15.0 Consensus size: 4
14056949 TTTTATTTCT
* * * *
14056959 TTTA TTTA TTTA TTTA TGTT- TTTC TTTA ATT- TTTA TTTT TTTA TTTT
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14057006 TTTA TTT- TTTA
1 TTTA TTTA TTTA
14057017 ATATTCCTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
3 7 0.16
4 34 0.79
5 2 0.05
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:14056970 original size:8 final size:7
Alignment explanation
Indices: 14056931--14057016 Score: 59
Period size: 8 Copynumber: 11.4 Consensus size: 7
14056921 TTTGTTTGAA
14056931 TTATTTT
1 TTATTTT
*
14056938 TAATTTT
1 TTATTTT
14056945 TCTATTTT
1 T-TATTTT
*
14056953 ATT-TCTT
1 -TTATTTT
14056960 TTATTTAT
1 TTATTT-T
14056968 TTATTTAT
1 TTATTT-T
14056976 GTT-TTTCT
1 -TTATTT-T
*
14056984 TTAATTT
1 TTATTTT
14056991 TTATTTTT
1 TTA-TTTT
14056999 TTATTTTT
1 TTA-TTTT
14057007 TTATTTT
1 TTATTTT
14057014 TTA
1 TTA
14057017 ATATTCCTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
6 2 0.03
7 25 0.38
8 35 0.54
9 3 0.05
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (7 bp):
TTATTTT
Found at i:14056997 original size:16 final size:16
Alignment explanation
Indices: 14056932--14057021 Score: 56
Period size: 17 Copynumber: 5.2 Consensus size: 16
14056922 TTGTTTGAAT
*
14056932 TATTTTTAATTTTTCTA
1 TATTTTT-ATTTTTTTA
* *
14056949 TTTTATTTCTTTTATTTA
1 TATT-TTTATTTT-TTTA
*
14056967 T-TTATTTATGTTTTTCTT
1 TATT-TTTAT-TTTTT-TA
14056985 TAATTTTTATTTTTTTA
1 T-ATTTTTATTTTTTTA
* *
14057002 TTTTTTTATTTTTTAA
1 TATTTTTATTTTTTTA
14057018 TATT
1 TATT
14057022 CCTTCATTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
16 16 0.28
17 18 0.31
18 17 0.29
19 5 0.09
20 2 0.03
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (16 bp):
TATTTTTATTTTTTTA
Found at i:14057013 original size:13 final size:13
Alignment explanation
Indices: 14056935--14057005 Score: 56
Period size: 13 Copynumber: 5.3 Consensus size: 13
14056925 TTTGAATTAT
*
14056935 TTTTAATTTTTCTA
1 TTTT-ATTTTTTTA
14056949 TTTTATTTCTTTTA
1 TTTTATTT-TTTTA
*
14056963 -TTTATTTATTTA
1 TTTTATTTTTTTA
* *
14056975 TGTTT-TTCTTTAA
1 T-TTTATTTTTTTA
14056988 TTTTTATTTTTTTA
1 -TTTTATTTTTTTA
14057002 TTTT
1 TTTT
14057006 TTTATTTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
12 4 0.09
13 23 0.51
14 18 0.40
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.77
Consensus pattern (13 bp):
TTTTATTTTTTTA
Found at i:14057143 original size:25 final size:25
Alignment explanation
Indices: 14057096--14057178 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
14057086 TTGAATTTTT
* * *
14057096 ATATTTTTGCATG-ATTTTATTATG
1 ATATTATTGTATGAATTTTTTTATG
14057120 ATATTATTGTATGAATTTTTTTATG
1 ATATTATTGTATGAATTTTTTTATG
*
14057145 ATATTTATT-TATGATATTTTTGTATG
1 ATA-TTATTGTATGA-ATTTTTTTATG
*
14057171 ATTTTATT
1 ATATTATT
14057179 ATGATATTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.22
25 23 0.45
26 17 0.33
ACGTcount: A:0.27, C:0.01, G:0.11, T:0.61
Consensus pattern (25 bp):
ATATTATTGTATGAATTTTTTTATG
Found at i:14057150 original size:13 final size:13
Alignment explanation
Indices: 14057109--14057186 Score: 81
Period size: 13 Copynumber: 6.2 Consensus size: 13
14057099 TTTTTGCATG
*
14057109 ATTTTATTATGAT
1 ATTTTTTTATGAT
* *
14057122 ATTATTGTATGA-
1 ATTTTTTTATGAT
14057134 ATTTTTTTATGAT
1 ATTTTTTTATGAT
*
14057147 ATTTATTTATGAT
1 ATTTTTTTATGAT
*
14057160 ATTTTTGTATG--
1 ATTTTTTTATGAT
*
14057171 ATTTTATTATGAT
1 ATTTTTTTATGAT
14057184 ATT
1 ATT
14057187 ATAGCATGAT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
11 9 0.17
12 10 0.19
13 33 0.63
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
ATTTTTTTATGAT
Found at i:14057256 original size:24 final size:24
Alignment explanation
Indices: 14057117--14057297 Score: 80
Period size: 24 Copynumber: 7.7 Consensus size: 24
14057107 TGATTTTATT
* * * *
14057117 ATGATATTATTGTATGAATTTTTTT
1 ATGATATTTTTATATG-ATATTTTA
14057142 ATGATATTTATT-TATGATATTTT-
1 ATGATATTT-TTATATGATATTTTA
*
14057165 -TG-TATGATTTTATTATGATATTAT-
1 ATGATAT--TTTTA-TATGATATTTTA
14057189 A-GCATGATTTTTA-ATG--ATTTTA
1 ATG-AT-ATTTTTATATGATATTTTA
* ** * *
14057211 ATGAT-TATTTGCATGAAATTTTC
1 ATGATATTTTTATATGATATTTTA
* *
14057234 ATGATATTATTATATGATGTTTTA
1 ATGATATTTTTATATGATATTTTA
* *
14057258 ATGAT-TTTTTCTATGATATTTTT
1 ATGATATTTTTATATGATATTTTA
14057281 AT-AGTATTTTTATATGA
1 ATGA-TATTTTTATATGA
14057298 AATTATTTTG
Statistics
Matches: 120, Mismatches: 19, Indels: 35
0.69 0.11 0.20
Matches are distributed among these distances:
20 4 0.03
21 10 0.08
22 8 0.07
23 33 0.28
24 43 0.36
25 17 0.14
26 3 0.03
27 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (24 bp):
ATGATATTTTTATATGATATTTTA
Found at i:14057258 original size:47 final size:47
Alignment explanation
Indices: 14057206--14057297 Score: 116
Period size: 47 Copynumber: 2.0 Consensus size: 47
14057196 TTTTTAATGA
14057206 TTTTAATGATTATTTGC-ATGAAATTTTCAT-GATATTATTATATGATG
1 TTTTAATGATT-TTTGCTATGAAATTTTCATAG-TATTATTATATGATG
* * * *
14057253 TTTTAATGATTTTTTCTATGATATTTTTATAGTATTTTTATATGA
1 TTTTAATGATTTTTGCTATGAAATTTTCATAGTATTATTATATGA
14057298 AATTATTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
46 4 0.10
47 34 0.87
48 1 0.03
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (47 bp):
TTTTAATGATTTTTGCTATGAAATTTTCATAGTATTATTATATGATG
Found at i:14057279 original size:23 final size:23
Alignment explanation
Indices: 14057205--14057279 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
14057195 ATTTTTAATG
* *
14057205 ATTTTAATGATTATTTGC-ATGAA
1 ATTTTAATGATT-TTTTCTATGAT
* * *
14057228 ATTTTCATGATATTATTATATGAT
1 ATTTTAATGAT-TTTTTCTATGAT
*
14057252 GTTTTAATGATTTTTTCTATGAT
1 ATTTTAATGATTTTTTCTATGAT
14057275 ATTTT
1 ATTTT
14057280 TATAGTATTT
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
23 26 0.65
24 14 0.35
ACGTcount: A:0.29, C:0.04, G:0.11, T:0.56
Consensus pattern (23 bp):
ATTTTAATGATTTTTTCTATGAT
Found at i:14058387 original size:72 final size:72
Alignment explanation
Indices: 14058267--14058401 Score: 157
Period size: 72 Copynumber: 1.9 Consensus size: 72
14058257 GATCCATTCA
* * * * * * * *
14058267 AAAATGGATTGATTGGTTTTTTATACAAAAAGGTATTGAACTTCAAAATT-GCAAAAATGGATCT
1 AAAATGGATTAATAGATTTTTTATACAAAAAAGTACTCAAATTCAAAATTAAC-AAAATGGATCT
14058331 ATCATTAT
65 ATCATTAT
*
14058339 AAAATGGATTAATAGATTTTTTATACAAAATAAGT-CTCAAATTTAAAATTAACAAAATGGATC
1 AAAATGGATTAATAGATTTTTTATACAAAA-AAGTACTCAAATTCAAAATTAACAAAATGGATC
14058402 AATCCCCTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
72 48 0.92
73 4 0.08
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (72 bp):
AAAATGGATTAATAGATTTTTTATACAAAAAAGTACTCAAATTCAAAATTAACAAAATGGATCTA
TCATTAT
Found at i:14065118 original size:203 final size:200
Alignment explanation
Indices: 14064645--14065188 Score: 729
Period size: 203 Copynumber: 2.7 Consensus size: 200
14064635 AAAAAAAAAT
* * * * *
14064645 AATAAAGCATAATGTGACATTTGATTTTATAGTCACATTTGACTTTATCTTACAATCATTTATGA
1 AATAAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACATTATCTTATAATCATTCATGA
** * * * * *
14064710 TAATAATTGTGATACA-AATGCTGTGATGATTTAGCTTTCATCATTAATATATCTGATTTTATAA
66 TAATAATTGTG-T-CATAATATTATGATGATTTATCTTTCATCACTAATATATCTGATTTCATCA
* * * ** *
14064774 TTTATTTATG--ATGATTATAACCTTCAATGATGTTCTTCTTATAGATAGTTGATGAAAACTAAT
129 TTTATTT-TGCAACGATTATAACCTTCAATGATGTTCTTCTTATAAATAGCTGACCAAAACTAAC
14064837 GTCACAAA
193 GTCACAAA
*
14064845 AA-AAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACGTTATCTTATAATCATTCATGA
1 AATAAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACATTATCTTATAATCATTCATGA
14064909 TAATAATTGTGTCATTAATATTATGATGATTTATCTTTCATCACTAATATATCTGATTTCATCAT
66 TAATAATTGTGTCA-TAATATTATGATGATTTATCTTTCATCACTAATATATCTGATTTCATCAT
* * * *
14064974 TTATTTTGCAACGATT-TAGCCTTTTAATGATGTTTTTGTTCATAAATAGCTGACCAAAACTAAC
130 TTATTTTGCAACGATTATAACC-TTCAATGATGTTCTTCTT-ATAAATAGCTGACCAAAACTAAC
14065038 GTCACAAA
193 GTCACAAA
* * * *
14065046 AATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATCTTATAATCATTCATG
1 AA-TAAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACATTATCTTATAATCATTCATG
*
14065111 ATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATATATCTGATTTCATCA
65 ATAATAATTGTGTCA-TAATATTATGATGATTTATCTTTCATCACTAATATATCTGATTTCATCA
14065176 TTTATTTTGCAAC
129 TTTATTTTGCAAC
14065189 TAACGTCACA
Statistics
Matches: 307, Mismatches: 29, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
197 2 0.01
198 3 0.01
199 120 0.39
200 22 0.07
201 28 0.09
203 132 0.43
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42
Consensus pattern (200 bp):
AATAAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACATTATCTTATAATCATTCATGA
TAATAATTGTGTCATAATATTATGATGATTTATCTTTCATCACTAATATATCTGATTTCATCATT
TATTTTGCAACGATTATAACCTTCAATGATGTTCTTCTTATAAATAGCTGACCAAAACTAACGTC
ACAAA
Found at i:14065219 original size:155 final size:155
Alignment explanation
Indices: 14065031--14065343 Score: 626
Period size: 155 Copynumber: 2.0 Consensus size: 155
14065021 AGCTGACCAA
14065031 AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
1 AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
14065096 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
66 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
14065161 TATCTGATTTCATCATTTATTTTGC
131 TATCTGATTTCATCATTTATTTTGC
14065186 AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
1 AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
14065251 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
66 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
14065316 TATCTGATTTCATCATTTATTTTGC
131 TATCTGATTTCATCATTTATTTTGC
14065341 AAC
1 AAC
14065344 GATTTAGCCT
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 158 1.00
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.41
Consensus pattern (155 bp):
AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
TATCTGATTTCATCATTTATTTTGC
Found at i:14065518 original size:358 final size:356
Alignment explanation
Indices: 14064830--14065519 Score: 1166
Period size: 358 Copynumber: 1.9 Consensus size: 356
14064820 AGTTGATGAA
* * * *
14064830 AACTAATGTCACAAAAAAAAGCATAAAGTGACATTTGATTTTATTGTCACATTTGACGTTATCTT
1 AACTAACGTCACAAAAAAAAGCATAAAGTGACATTTGATTTTATTGTCACAGTAGACATTATCTT
*
14064895 ATAATCATTCATGATAATAATTGTGTCATTAATATTATGATGATTTATCTTTCATCACTAATATA
66 ATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCATCACTAATATA
*
14064960 TCTGATTTCATCATTTATTTTGCAACGATTTAGCCTTTTAATGATGTTTTTGTTCATAAATAGCT
131 TCTGATTTCATCATTTATTTTGCAACGATTTAGCCTTTTAATGACGTTTTTGTTCATAAATAGCT
14065025 GACCAAAACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGAC
196 GACCAAAACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGAC
* * * * *
14065090 ATTATCTTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCA
261 ATTATCTTACAATCATTCATGACAATAATTGTGTCACTAATATTATGATGATTTACCTCTCATCA
14065155 CTAATATATCTGATTTCATCATTTATTTTGC
326 CTAATATATCTGATTTCATCATTTATTTTGC
* *
14065186 AACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGACATTATC
1 AACTAACGTCACAAAAA--AAAGCATAAAGTGACATTTGATTTTATTGTCACAGTAGACATTATC
*
14065251 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCGTCACTAATA
64 TTATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCATCACTAATA
14065316 TATCTGATTTCATCATTTATTTTGCAACGATTTAGCCTTTTAATGACGTTTTTGTTCATAAATAG
129 TATCTGATTTCATCATTTATTTTGCAACGATTTAGCCTTTTAATGACGTTTTTGTTCATAAATAG
14065381 CTGACCAAAACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAG
194 CTGACCAAAACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAG
** * * *
14065446 ACATTATCTTACAATCATTGGTGACAATAATT-TCGTCACTATTGTTGTGATGATTTACCTCTCA
259 ACATTATCTTACAATCATTCATGACAATAATTGT-GTCACTAATATTATGATGATTTACCTCTCA
*
14065510 TTACTAATAT
323 TCACTAATAT
14065520 TTTGAATTTT
Statistics
Matches: 311, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
356 16 0.05
357 1 0.00
358 294 0.95
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (356 bp):
AACTAACGTCACAAAAAAAAGCATAAAGTGACATTTGATTTTATTGTCACAGTAGACATTATCTT
ATAATCATTCATGATAATAATTGTGTCACTAATATTATGATGATTTATCTTTCATCACTAATATA
TCTGATTTCATCATTTATTTTGCAACGATTTAGCCTTTTAATGACGTTTTTGTTCATAAATAGCT
GACCAAAACTAACGTCACAAAAATTAAAGCATAAGGTGATATTTGATTTTATTGTCACAGTAGAC
ATTATCTTACAATCATTCATGACAATAATTGTGTCACTAATATTATGATGATTTACCTCTCATCA
CTAATATATCTGATTTCATCATTTATTTTGC
Found at i:14066468 original size:25 final size:26
Alignment explanation
Indices: 14066365--14066469 Score: 99
Period size: 26 Copynumber: 4.1 Consensus size: 26
14066355 ACATTTCAGA
* *
14066365 TTTCATTTAAGGTTTTGATTTTATGA
1 TTTCATTTAAGGTTTTGACTTTATGG
* * * * **
14066391 TTTTATTTAGGGCTTCGACTTTAAAG
1 TTTCATTTAAGGTTTTGACTTTATGG
*
14066417 TTTCATTTAAGGTTTT-AATTT-TGGG
1 TTTCATTTAAGGTTTTGACTTTAT-GG
14066442 TTTCATTTAAGGTTTTG-CTTTATGG
1 TTTCATTTAAGGTTTTGACTTTATGG
14066467 TTT
1 TTT
14066470 TAATTTTACG
Statistics
Matches: 60, Mismatches: 16, Indels: 7
0.72 0.19 0.08
Matches are distributed among these distances:
25 29 0.48
26 31 0.52
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.55
Consensus pattern (26 bp):
TTTCATTTAAGGTTTTGACTTTATGG
Found at i:14066705 original size:16 final size:17
Alignment explanation
Indices: 14066684--14066724 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
14066674 CATAAAAAAA
14066684 TATTATTTA-TTACTTT
1 TATTATTTATTTACTTT
*
14066700 TATTA-TTATTTATTTT
1 TATTATTTATTTACTTT
*
14066716 TATAATTTA
1 TATTATTTA
14066725 ATAATTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 3 0.14
16 15 0.71
17 3 0.14
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TATTATTTATTTACTTT
Found at i:14067242 original size:12 final size:12
Alignment explanation
Indices: 14067225--14067258 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
14067215 TTTATATTTT
14067225 TATTATTAATTA
1 TATTATTAATTA
14067237 TATTATTAATTA
1 TATTATTAATTA
*
14067249 T-TTTTTAATT
1 TATTATTAATT
14067259 TTTTAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATTAATTA
Found at i:14074757 original size:68 final size:69
Alignment explanation
Indices: 14074632--14074764 Score: 191
Period size: 68 Copynumber: 1.9 Consensus size: 69
14074622 AACTCTTATA
* *
14074632 TTTGTATCACTTTTTATTATTGTTAGAATTACTTGTTTATGGATGTCTAACTCATGATGTATTTA
1 TTTGTATCACTTTTTATTATTGTTAGAAGTACTTGTTTATGAATGTCTAACTCATGATGTATTTA
14074697 GTTG
66 GTTG
* *
14074701 TTTGTATCACTTTTTGA-TGTTGTTAG-AGTACTTAG-TTATGAATGTCTAACTTATGATGTATT
1 TTTGTATCACTTTTT-ATTATTGTTAGAAGTACTT-GTTTATGAATGTCTAACTCATGATGTATT
14074763 TA
64 TA
14074765 ATTATTTATA
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
68 33 0.57
69 24 0.41
70 1 0.02
ACGTcount: A:0.24, C:0.08, G:0.17, T:0.51
Consensus pattern (69 bp):
TTTGTATCACTTTTTATTATTGTTAGAAGTACTTGTTTATGAATGTCTAACTCATGATGTATTTA
GTTG
Found at i:14074999 original size:64 final size:63
Alignment explanation
Indices: 14074922--14075045 Score: 167
Period size: 64 Copynumber: 2.0 Consensus size: 63
14074912 TATTATGTAT
* * * * * *
14074922 ATGTAGTTATAGTAACTTATACATATAGTTATAATAACATGTACTATAGTTGTAGTAAATGTGC
1 ATGTAGTTATAGTAACATATACATACAATTATAATAACATATAC-ATAGTTGCAATAAATGTGC
**
14074986 ATGTAGTTATAGTAACATATATGTACAATTATAATAACATATACATAGTTGCAATAAATG
1 ATGTAGTTATAGTAACATATACATACAATTATAATAACATATACATAGTTGCAATAAATG
14075046 CACATAATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
63 14 0.27
64 38 0.73
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (63 bp):
ATGTAGTTATAGTAACATATACATACAATTATAATAACATATACATAGTTGCAATAAATGTGC
Found at i:14075077 original size:21 final size:21
Alignment explanation
Indices: 14075053--14075285 Score: 162
Period size: 21 Copynumber: 11.3 Consensus size: 21
14075043 ATGCACATAA
*
14075053 TTATAGCAAATATATATATAG
1 TTATAGCAAATATACATATAG
*
14075074 TTATAG----TAGTACATATTG
1 TTATAGCAAATA-TACATATAG
*
14075092 TTATAGCAAATGTACATATAG
1 TTATAGCAAATATACATATAG
* *
14075113 TTATAGTAACATATAC--GTAG
1 TTATAGCAA-ATATACATATAG
* *
14075133 TTTTAGTAAATATAC--ATAG
1 TTATAGCAAATATACATATAG
* * *
14075152 ATAAAGCAAATATACATATAT
1 TTATAGCAAATATACATATAG
* **
14075173 TTATAGTAACATGA-ATGTATAG
1 TTATAGCAA-AT-ATACATATAG
* *
14075195 TTTTAGCAAATGTACATATAG
1 TTATAGCAAATATACATATAG
* *
14075216 TTATAGTAACATATACATATAA
1 TTATAGCAA-ATATACATATAG
* *
14075238 TT-TAGTAAGATGTACATATAG
1 TTATAGCAA-ATATACATATAG
*
14075259 TTGTAGCAAATATACATATAG
1 TTATAGCAAATATACATATAG
14075280 TTATAG
1 TTATAG
14075286 TAACGTACAT
Statistics
Matches: 164, Mismatches: 35, Indels: 26
0.73 0.16 0.12
Matches are distributed among these distances:
17 2 0.01
18 13 0.08
19 20 0.12
20 11 0.07
21 80 0.49
22 37 0.23
23 1 0.01
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (21 bp):
TTATAGCAAATATACATATAG
Found at i:14075134 original size:99 final size:101
Alignment explanation
Indices: 14075014--14075234 Score: 263
Period size: 99 Copynumber: 2.2 Consensus size: 101
14075004 ATATGTACAA
* * * *
14075014 TTATAATAACATATACATAGTTGCAATAAATGCACATA-ATTATAGCAAATATATATATAGTTAT
1 TTATAGTAACATATACATAGTTGCAATAAATACACATAGA-TAAAGCAAATATACATATAGTTAT
14075078 AGTAGTACAT-A-T-T-GTTATAGCAAATGTACATATAG
65 AGTA--ACATAAGTATAGTTATAGCAAATGTACATATAG
* ** * * *
14075113 TTATAGTAACATATACGTAGTTTTAGTAAATATACATAGATAAAGCAAATATACATATATTTATA
1 TTATAGTAACATATACATAGTTGCAATAAATACACATAGATAAAGCAAATATACATATAGTTATA
*
14075178 GTAACATGAATGTATAGTTTTAGCAAATGTACATATAG
66 GTAACAT-AA-GTATAGTTATAGCAAATGTACATATAG
14075216 TTATAGTAACATATACATA
1 TTATAGTAACATATACATA
14075235 TAATTTAGTA
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
97 4 0.04
99 57 0.55
100 1 0.01
101 1 0.01
102 1 0.01
103 39 0.38
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.36
Consensus pattern (101 bp):
TTATAGTAACATATACATAGTTGCAATAAATACACATAGATAAAGCAAATATACATATAGTTATA
GTAACATAAGTATAGTTATAGCAAATGTACATATAG
Found at i:14075139 original size:20 final size:19
Alignment explanation
Indices: 14075110--14075166 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
14075100 AATGTACATA
14075110 TAGTTATAGTAACATATACG
1 TAGTTATAGTAA-ATATACG
* *
14075130 TAGTTTTAGTAAATATACA
1 TAGTTATAGTAAATATACG
* * *
14075149 TAGATAAAGCAAATATAC
1 TAGTTATAGTAAATATAC
14075167 ATATATTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 20 0.65
20 11 0.35
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (19 bp):
TAGTTATAGTAAATATACG
Found at i:14075147 original size:19 final size:20
Alignment explanation
Indices: 14075110--14075147 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14075100 AATGTACATA
14075110 TAGTTATAGTAACATATACG
1 TAGTTATAGTAACATATACG
*
14075130 TAGTTTTAGTAA-ATATAC
1 TAGTTATAGTAACATATAC
14075148 ATAGATAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (20 bp):
TAGTTATAGTAACATATACG
Found at i:14075229 original size:103 final size:105
Alignment explanation
Indices: 14075095--14075289 Score: 288
Period size: 103 Copynumber: 1.9 Consensus size: 105
14075085 CATATTGTTA
*
14075095 TAGCAAATGTACATATAGTTATAGTAACATATACGTAGT-TTTAGTAA-ATATAC-ATAGATAAA
1 TAGCAAATGTACATATAGTTATAGTAACATATACATA-TATTTAGTAAGATATACAATAGATAAA
*
14075157 GCAAATATACATATATTTATAGTAACATGAATGTATAGTTT
65 GCAAATATACATATAGTTATAGTAACATGAATGTATAGTTT
* * **
14075198 TAGCAAATGTACATATAGTTATAGTAACATATACATATAATTTAGTAAGATGTACATATAGTTGT
1 TAGCAAATGTACATATAGTTATAGTAACATATACATAT-ATTTAGTAAGATATACA-ATAGATAA
14075263 AGCAAATATACATATAGTTATAGTAAC
64 AGCAAATATACATATAGTTATAGTAAC
14075290 GTACATATAT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
102 1 0.01
103 36 0.44
104 8 0.10
105 5 0.06
107 31 0.38
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (105 bp):
TAGCAAATGTACATATAGTTATAGTAACATATACATATATTTAGTAAGATATACAATAGATAAAG
CAAATATACATATAGTTATAGTAACATGAATGTATAGTTT
Found at i:14075251 original size:43 final size:42
Alignment explanation
Indices: 14074871--14075298 Score: 149
Period size: 43 Copynumber: 10.3 Consensus size: 42
14074861 TTTATGATAC
* *
14074871 AATGTACATATAGTTATATCTAA-ATATACATAT-CTTATAAGTA
1 AATGTACATATAGTTATA-GTAACATATACATATAATT-T-AGTA
* * * * * *
14074914 TTATGTATATGTAGTTATAGTAACTTATACATATAGTTATAATA
1 -AATGTACATATAGTTATAGTAACATATACATATAATT-TAGTA
* * * * *
14074958 ACATGTAC-TATAGTTGTAGTAA-ATGTGCATGTAGTTATAGTA
1 A-ATGTACATATAGTTATAGTAACATATACATATAATT-TAGTA
* ** * * * ** *
14075000 ACATATATGTACAATTATAATAACATATACATAGT--TGCAATA
1 A-ATGTACATATAGTTATAGTAACATATACATA-TAATTTAGTA
* * * *
14075042 AATGCACATA-A-TTATAGCAA-ATATATATATAGTTATAGT-
1 AATGTACATATAGTTATAGTAACATATACATATAATT-TAGTA
* * * *
14075081 -A-GTACATATTGTTATAGCAA-ATGTACATATAGTTATAGTA
1 AATGTACATATAGTTATAGTAACATATACATATAATT-TAGTA
* * * * ** *
14075121 ACATATAC--GTAGTTTTAGTAA-ATATACATA-GATAAAGCA
1 A-ATGTACATATAGTTATAGTAACATATACATATAATTTAGTA
* * ** * *
14075160 AATATACATATATTTATAGTAACATGA-ATGTATAGTTTTAGCA
1 AATGTACATATAGTTATAGTAACAT-ATACATATA-ATTTAGTA
14075203 AATGTACATATAGTTATAGTAACATATACATATAATTTAGTA
1 AATGTACATATAGTTATAGTAACATATACATATAATTTAGTA
* * *
14075245 AGATGTACATATAGTTGTAGCAA-ATATACATATAGTTATAGT-
1 A-ATGTACATATAGTTATAGTAACATATACATATAATT-TAGTA
*
14075287 AACGTACATATA
1 AATGTACATATA
14075299 TCTTTTGACA
Statistics
Matches: 288, Mismatches: 72, Indels: 51
0.70 0.18 0.12
Matches are distributed among these distances:
37 7 0.02
38 15 0.05
39 38 0.13
40 14 0.05
41 37 0.13
42 49 0.17
43 85 0.30
44 38 0.13
45 5 0.02
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (42 bp):
AATGTACATATAGTTATAGTAACATATACATATAATTTAGTA
Found at i:14075266 original size:64 final size:65
Alignment explanation
Indices: 14075083--14075289 Score: 196
Period size: 64 Copynumber: 3.3 Consensus size: 65
14075073 GTTATAGTAG
* * * * * * *
14075083 TACATATTGTTATAGCAA-ATGTACATATAGTTATAGTAACAT-ATAC--GTAGTTTTAGTAAAT
1 TACATATAGTTATAGTAACATATACATATAATTATAGTAACATGA-ACATATAGTTGTAGCAAAT
14075144 A
65 A
* * * * ** * *
14075145 TAC--ATAGATAAAGCAA-ATATACATATATTTATAGTAACATGAATGTATAGTTTTAGCAAATG
1 TACATATAGTTATAGTAACATATACATATAATTATAGTAACATGAACATATAGTTGTAGCAAATA
* *
14075207 TACATATAGTTATAGTAACATATACATATAATT-TAGTAAGATGTACATATAGTTGTAGCAAATA
1 TACATATAGTTATAGTAACATATACATATAATTATAGTAACATGAACATATAGTTGTAGCAAATA
14075271 TACATATAGTTATAGTAAC
1 TACATATAGTTATAGTAAC
14075290 GTACATATAT
Statistics
Matches: 120, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
60 33 0.28
61 1 0.01
62 19 0.16
64 54 0.45
65 13 0.11
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (65 bp):
TACATATAGTTATAGTAACATATACATATAATTATAGTAACATGAACATATAGTTGTAGCAAATA
Found at i:14086078 original size:16 final size:16
Alignment explanation
Indices: 14086057--14086087 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14086047 TTGTGCATTG
14086057 ATATTTTAATTTTTTT
1 ATATTTTAATTTTTTT
14086073 ATATTTTAATTTTTT
1 ATATTTTAATTTTTT
14086088 AATTTGATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATATTTTAATTTTTTT
Found at i:14086153 original size:19 final size:19
Alignment explanation
Indices: 14086131--14086182 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
14086121 TTTTTCATTT
***
14086131 TTTTAGATTTTTTAAATTG
1 TTTTAGATTTTTTAAAAAA
*
14086150 TTTTGGA-TTTTTAAAAAA
1 TTTTAGATTTTTTAAAAAA
14086168 TTTTAGATTTTTTAA
1 TTTTAGATTTTTTAA
14086183 TATCAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (19 bp):
TTTTAGATTTTTTAAAAAA
Found at i:14086372 original size:19 final size:18
Alignment explanation
Indices: 14086350--14086409 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
14086340 TTTTTGAATT
14086350 TTTTGAAATTTTTAAAAAA
1 TTTTGAAATTTTT-AAAAA
* *
14086369 TTTT-AGATTTTTTCAAAA
1 TTTTGA-AATTTTTAAAAA
* *
14086387 TTTTGGGAATTTTTTAAAA
1 TTTT-GAAATTTTTAAAAA
14086406 TTTT
1 TTTT
14086410 CAGATTTTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 9 0.27
19 24 0.73
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (18 bp):
TTTTGAAATTTTTAAAAA
Found at i:14086378 original size:18 final size:18
Alignment explanation
Indices: 14086357--14086418 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 18
14086347 ATTTTTTGAA
14086357 ATTTTTAAAAAATTTT-AG
1 ATTTTT-AAAAATTTTCAG
* **
14086375 ATTTTTTCAAAATTTTGGG
1 A-TTTTTAAAAATTTTCAG
*
14086394 AATTTTTTAAAATTTTCAG
1 -ATTTTTAAAAATTTTCAG
14086413 ATTTTT
1 ATTTTT
14086419 GGGTATTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 15 0.42
19 20 0.56
20 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (18 bp):
ATTTTTAAAAATTTTCAG
Found at i:14086418 original size:19 final size:18
Alignment explanation
Indices: 14086365--14086418 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
14086355 AAATTTTTAA
14086365 AAAATTTTAGATTTTTTC
1 AAAATTTTAGATTTTTTC
*
14086383 AAAATTTTGGGAATTTTTT-
1 AAAATTTT-AG-ATTTTTTC
14086402 AAAATTTTCAGATTTTT
1 AAAATTTT-AGATTTTT
14086419 GGGTATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 14 0.45
19 10 0.32
20 7 0.23
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (18 bp):
AAAATTTTAGATTTTTTC
Found at i:14089359 original size:24 final size:24
Alignment explanation
Indices: 14089330--14089395 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
14089320 TTTTTAGAGT
14089330 TCAAATTATTTTGAATTTGAATTA
1 TCAAATTATTTTGAATTTGAATTA
*
14089354 TCAAATT-TTTT--A---G-AGT-
1 TCAAATTATTTTGAATTTGAATTA
14089370 TCAAATTATTTTGAATTTGAATTA
1 TCAAATTATTTTGAATTTGAATTA
14089394 TC
1 TC
14089396 TTAAATTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 16
0.64 0.04 0.32
Matches are distributed among these distances:
16 7 0.22
17 6 0.19
18 1 0.03
19 1 0.03
21 1 0.03
22 1 0.03
23 6 0.19
24 9 0.28
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (24 bp):
TCAAATTATTTTGAATTTGAATTA
Found at i:14089372 original size:40 final size:40
Alignment explanation
Indices: 14089317--14089395 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
14089307 AAAAAGTTGG
14089317 AATTTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCA
1 AATTTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCA
14089357 AATTTTTTAGAGTTCAAATTATTTTGAATTTGAATTATC
1 AATTTTTTAGAGTTCAAATTATTTTGAATTTGAATTATC
14089396 TTAAATTTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (40 bp):
AATTTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCA
Found at i:14089392 original size:16 final size:15
Alignment explanation
Indices: 14089373--14089418 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
14089363 TTAGAGTTCA
14089373 AATTATTTTGAATTTG
1 AATTATTTT-AATTTG
*
14089389 AATTATCTTAAATTTG
1 AATTAT-TTTAATTTG
*
14089405 AATAATTTTAATTT
1 AATTATTTTAATTT
14089419 TAAATCTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 7 0.27
16 17 0.65
17 2 0.08
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (15 bp):
AATTATTTTAATTTG
Found at i:14092923 original size:2 final size:2
Alignment explanation
Indices: 14092879--14092903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14092869 CAATACCATA
14092879 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14092904 AACACGCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14093171 original size:24 final size:24
Alignment explanation
Indices: 14093139--14093187 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14093129 AAAGGAGTCA
14093139 TAGTCTTTCGTGTTTTATTTTCTT
1 TAGTCTTTCGTGTTTTATTTTCTT
14093163 TAGTCTTTCGTGTTTTATTTTCTT
1 TAGTCTTTCGTGTTTTATTTTCTT
14093187 T
1 T
14093188 GTTTGGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.12, G:0.12, T:0.67
Consensus pattern (24 bp):
TAGTCTTTCGTGTTTTATTTTCTT
Found at i:14093671 original size:17 final size:17
Alignment explanation
Indices: 14093645--14093678 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14093635 AAAAAGGTTT
*
14093645 TGCTCGTTAATTATAAA
1 TGCTCGTTAATCATAAA
*
14093662 TGCTCTTTAATCATAAA
1 TGCTCGTTAATCATAAA
14093679 GGACGATAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (17 bp):
TGCTCGTTAATCATAAA
Found at i:14114630 original size:24 final size:24
Alignment explanation
Indices: 14114601--14114666 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 24
14114591 TTTTTAGAGT
14114601 TCAAATTATTTTGAATTTGAATTA
1 TCAAATTATTTTGAATTTGAATTA
*
14114625 TCAAATT-TTTT--A---G-AGT-
1 TCAAATTATTTTGAATTTGAATTA
14114641 TCAAATTATTTTGAATTTGAATTA
1 TCAAATTATTTTGAATTTGAATTA
14114665 TC
1 TC
14114667 TTAAATTGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 16
0.64 0.04 0.32
Matches are distributed among these distances:
16 7 0.22
17 6 0.19
18 1 0.03
19 1 0.03
21 1 0.03
22 1 0.03
23 6 0.19
24 9 0.28
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (24 bp):
TCAAATTATTTTGAATTTGAATTA
Found at i:14114643 original size:40 final size:40
Alignment explanation
Indices: 14114591--14114666 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
14114581 AAAGTTGGAA
14114591 TTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCAAAT
1 TTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCAAAT
14114631 TTTTTAGAGTTCAAATTATTTTGAATTTGAATTATC
1 TTTTTAGAGTTCAAATTATTTTGAATTTGAATTATC
14114667 TTAAATTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.51
Consensus pattern (40 bp):
TTTTTAGAGTTCAAATTATTTTGAATTTGAATTATCAAAT
Found at i:14114663 original size:16 final size:15
Alignment explanation
Indices: 14114644--14114688 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
14114634 TTAGAGTTCA
14114644 AATTATTTTGAATTTG
1 AATTATTTT-AATTTG
* *
14114660 AATTATCTTAAATTG
1 AATTATTTTAATTTG
*
14114675 AATAATTTTAATTT
1 AATTATTTTAATTT
14114689 TTAAATCTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (15 bp):
AATTATTTTAATTTG
Found at i:14118451 original size:24 final size:24
Alignment explanation
Indices: 14118419--14118467 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14118409 AAAGGAGTCA
14118419 TAGTCTTTCGTGTTTTATTTTCTT
1 TAGTCTTTCGTGTTTTATTTTCTT
14118443 TAGTCTTTCGTGTTTTATTTTCTT
1 TAGTCTTTCGTGTTTTATTTTCTT
14118467 T
1 T
14118468 GTTTGGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.12, G:0.12, T:0.67
Consensus pattern (24 bp):
TAGTCTTTCGTGTTTTATTTTCTT
Found at i:14118949 original size:17 final size:17
Alignment explanation
Indices: 14118923--14118956 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14118913 AAAAAGGTTT
*
14118923 TGCTCGTTAATTATAAA
1 TGCTCGTTAATCATAAA
*
14118940 TGCTCTTTAATCATAAA
1 TGCTCGTTAATCATAAA
14118957 GGACGATAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (17 bp):
TGCTCGTTAATCATAAA
Found at i:14150973 original size:21 final size:22
Alignment explanation
Indices: 14150934--14150974 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14150924 CTTCTTATAT
14150934 GCTTATAACAATTGATATAAGA
1 GCTTATAACAATTGATATAAGA
* *
14150956 GCTTA-AACATTTGGTATAA
1 GCTTATAACAATTGATATAA
14150975 ATAGCATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (22 bp):
GCTTATAACAATTGATATAAGA
Found at i:14155556 original size:24 final size:24
Alignment explanation
Indices: 14155527--14155592 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
14155517 GCTAATAACT
14155527 AAACTAAAGAAATAAAAGAATTAA
1 AAACTAAAGAAATAAAAGAATTAA
*
14155551 AAACTAAAGAAATAAAATAATTAA
1 AAACTAAAGAAATAAAAGAATTAA
* *
14155575 GAACTAAA-AACTAAAAGA
1 AAACTAAAGAAATAAAAGA
14155593 GAGAAGAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
23 8 0.21
24 30 0.79
ACGTcount: A:0.70, C:0.06, G:0.08, T:0.17
Consensus pattern (24 bp):
AAACTAAAGAAATAAAAGAATTAA
Found at i:14155592 original size:16 final size:16
Alignment explanation
Indices: 14155528--14155592 Score: 55
Period size: 16 Copynumber: 4.1 Consensus size: 16
14155518 CTAATAACTA
*
14155528 AACTAAAGAAATAAAAG
1 AACTAAA-AACTAAAAG
*
14155545 AATTAAAAACT-AAAG
1 AACTAAAAACTAAAAG
*
14155560 AAAT-AAAA-TAATTAAG
1 AACTAAAAACTAA--AAG
14155576 AACTAAAAACTAAAAG
1 AACTAAAAACTAAAAG
14155592 A
1 A
14155593 GAGAAGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 5 0.13
15 7 0.18
16 13 0.33
17 10 0.26
18 3 0.08
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.17
Consensus pattern (16 bp):
AACTAAAAACTAAAAG
Found at i:14163227 original size:78 final size:78
Alignment explanation
Indices: 14163133--14163276 Score: 261
Period size: 78 Copynumber: 1.8 Consensus size: 78
14163123 TTGAAATTCT
*
14163133 TTTTGTTACTTTATTTATTGCCTTTAATTTTTTTGCTAAATTTTTATTTGATTTTACTATTCAAT
1 TTTTGTTACTTCATTTATTGCCTTTAATTTTTTTGCTAAATTTTTATTTGATTTTACTATTCAAT
14163198 TAAATTTTAGTCA
66 TAAATTTTAGTCA
* *
14163211 TTTTGTTACTTCATTTATTGCCTTTAATTTTTTTGTTAAATTTTTATTTGTTTTTACTATTCAAT
1 TTTTGTTACTTCATTTATTGCCTTTAATTTTTTTGCTAAATTTTTATTTGATTTTACTATTCAAT
14163276 T
66 T
14163277 TGTTTGCTCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.22, C:0.09, G:0.06, T:0.62
Consensus pattern (78 bp):
TTTTGTTACTTCATTTATTGCCTTTAATTTTTTTGCTAAATTTTTATTTGATTTTACTATTCAAT
TAAATTTTAGTCA
Found at i:14164189 original size:16 final size:17
Alignment explanation
Indices: 14164158--14164190 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14164148 ATTGCATTTT
14164158 TAAATTCAATTATGAAA
1 TAAATTCAATTATGAAA
*
14164175 TAAATT-AATTTTGAAA
1 TAAATTCAATTATGAAA
14164191 CCCATTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (17 bp):
TAAATTCAATTATGAAA
Found at i:14181410 original size:20 final size:20
Alignment explanation
Indices: 14181385--14181449 Score: 96
Period size: 20 Copynumber: 3.2 Consensus size: 20
14181375 TATACAATAA
*
14181385 ATCATGCAA-AACTATAAAAC
1 ATCATGCAATAA-TATAAAAT
14181405 ATCATGCAATAATATAAAAT
1 ATCATGCAATAATATAAAAT
*
14181425 ATCATGTAATAATATAAAAT
1 ATCATGCAATAATATAAAAT
14181445 ATCAT
1 ATCAT
14181450 ACAAAAATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (20 bp):
ATCATGCAATAATATAAAAT
Found at i:14183228 original size:39 final size:39
Alignment explanation
Indices: 14183174--14183266 Score: 123
Period size: 39 Copynumber: 2.4 Consensus size: 39
14183164 CATGCATATT
*
14183174 ATACAAATATATTAATAACGCAATAATATAATATTAATC
1 ATACAAATATGTTAATAACGCAATAATATAATATTAATC
* * * *
14183213 ATACAAATATGTTAATCATGTAATACTATAATATTAATC
1 ATACAAATATGTTAATAACGCAATAATATAATATTAATC
**
14183252 ACGCAAATATGTTAA
1 ATACAAATATGTTAA
14183267 ATAGTCATGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.34
Consensus pattern (39 bp):
ATACAAATATGTTAATAACGCAATAATATAATATTAATC
Found at i:14183506 original size:18 final size:18
Alignment explanation
Indices: 14183483--14183519 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14183473 AAAGGAAGAA
14183483 AAAAATAAAACAAAAAAT
1 AAAAATAAAACAAAAAAT
**
14183501 AAAAATAAAGTAAAAAAT
1 AAAAATAAAACAAAAAAT
14183519 A
1 A
14183520 GTAAACCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAAATAAAACAAAAAAT
Found at i:14184630 original size:38 final size:38
Alignment explanation
Indices: 14184546--14184711 Score: 175
Period size: 38 Copynumber: 4.4 Consensus size: 38
14184536 GGCTTGAAAA
* *
14184546 TTTTGAAAAATAAAG--TGT-TCCACTAAGGCTTCAAAC
1 TTTTGAAAAATAAAGTATTTCTCCACCAAGGCTTC-AAC
*
14184582 TTTTGAAAAATAAAGTATTTCTCCACCGAGGCTTCAAC
1 TTTTGAAAAATAAAGTATTTCTCCACCAAGGCTTCAAC
14184620 TTTTGAAAAATAAAGTACTCTTCT--ACCAAGGCATT-AAC
1 TTTTGAAAAATAAAGTA-T-TTCTCCACCAAGGC-TTCAAC
* * * *
14184658 TTTTGAAAAATAAATTA-CTCTTCCACCGAGGTTTCAAC
1 TTTTGAAAAATAAAGTATTTC-TCCACCAAGGCTTCAAC
14184696 TTTTGAAAAATAAAGT
1 TTTTGAAAAATAAAGT
14184712 GAGCATTTGA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
35 2 0.02
36 16 0.14
37 2 0.02
38 72 0.65
39 15 0.14
40 4 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (38 bp):
TTTTGAAAAATAAAGTATTTCTCCACCAAGGCTTCAAC
Found at i:14185093 original size:14 final size:14
Alignment explanation
Indices: 14185037--14185107 Score: 60
Period size: 14 Copynumber: 5.4 Consensus size: 14
14185027 GGATGCAATG
*
14185037 ATGCAAAGCATGAA
1 ATGCAATGCATGAA
* *
14185051 ATGTAATG-ATGCA
1 ATGCAATGCATGAA
*
14185064 ATG-TAT-CATG-A
1 ATGCAATGCATGAA
14185075 ATGCAATGCATGAA
1 ATGCAATGCATGAA
* *
14185089 ATGCAATGAATGTA
1 ATGCAATGCATGAA
14185103 ATGCA
1 ATGCA
14185108 TGAAATGCAA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
11 4 0.09
12 7 0.15
13 11 0.24
14 24 0.52
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.25
Consensus pattern (14 bp):
ATGCAATGCATGAA
Found at i:14185105 original size:23 final size:23
Alignment explanation
Indices: 14185071--14185117 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14185061 GCAATGTATC
14185071 ATGAATGCAATGCATGAAATGCA
1 ATGAATGCAATGCATGAAATGCA
*
14185094 ATGAATGTAATGCATGAAATGCA
1 ATGAATGCAATGCATGAAATGCA
14185117 A
1 A
14185118 AGTCAATGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.21, T:0.23
Consensus pattern (23 bp):
ATGAATGCAATGCATGAAATGCA
Found at i:14190774 original size:20 final size:20
Alignment explanation
Indices: 14190741--14190813 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
14190731 CATGCAATAA
*
14190741 ATCATACAAAAATATAAAAC
1 ATCATACAAAAATATAAAAT
* *
14190761 ATCATTCAACAATATAAAAT
1 ATCATACAAAAATATAAAAT
* * *
14190781 ATCATGCAATAATGTAAAAT
1 ATCATACAAAAATATAAAAT
14190801 ATCATACAAAAAT
1 ATCATACAAAAAT
14190814 TATCATGCAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.26
Consensus pattern (20 bp):
ATCATACAAAAATATAAAAT
Found at i:14190830 original size:13 final size:13
Alignment explanation
Indices: 14190798--14190980 Score: 58
Period size: 13 Copynumber: 14.4 Consensus size: 13
14190788 AATAATGTAA
* *
14190798 AATATCATACAAA
1 AATATCATGCAAT
14190811 AATTATCATGCAAT
1 AA-TATCATGCAAT
14190825 AATATCATAG-AAT
1 AATATCAT-GCAAT
*
14190838 ATCAAAT-AT--AA-
1 A--ATATCATGCAAT
14190849 AATATCATGCAAT
1 AATATCATGCAAT
14190862 AATATCATAG-AAT
1 AATATCAT-GCAAT
*
14190875 ATCAAAT-AT--AA-
1 A--ATATCATGCAAT
*
14190886 AATATCATGCAAA
1 AATATCATGCAAT
*
14190899 AATTATCATGTAAT
1 AA-TATCATGCAAT
14190913 -A-AT-AT--AA-
1 AATATCATGCAAT
14190920 AATATCATGCAA-
1 AATATCATGCAAT
*
14190932 ATTTATCATGCAAT
1 A-ATATCATGCAAT
14190946 AATATCATGCAAAT
1 AATATCATGC-AAT
*
14190960 ATATTAATAATGCAAT
1 A-A-T-ATCATGCAAT
14190976 AATAT
1 AATAT
14190981 AATATTAATC
Statistics
Matches: 132, Mismatches: 11, Indels: 54
0.67 0.06 0.27
Matches are distributed among these distances:
8 3 0.02
9 8 0.06
10 8 0.06
11 4 0.03
12 11 0.08
13 47 0.36
14 32 0.24
15 8 0.06
16 5 0.04
17 6 0.05
ACGTcount: A:0.52, C:0.11, G:0.05, T:0.32
Consensus pattern (13 bp):
AATATCATGCAAT
Found at i:14190855 original size:37 final size:37
Alignment explanation
Indices: 14190771--14190931 Score: 203
Period size: 37 Copynumber: 4.5 Consensus size: 37
14190761 ATCATTCAAC
*
14190771 AATATAAAATATCATGCAATAATGT-A-A-AATATCA
1 AATATAAAATATCATGCAATAATATCATAGAATATCA
* *
14190805 TACA-AAAATTATCATGCAATAATATCATAGAATATCA
1 AATATAAAA-TATCATGCAATAATATCATAGAATATCA
14190842 AATATAAAATATCATGCAATAATATCATAGAATATCA
1 AATATAAAATATCATGCAATAATATCATAGAATATCA
* *
14190879 AATATAAAATATCATGCAAAAATTATCAT-GTA-AT--
1 AATATAAAATATCATGCAATAA-TATCATAGAATATCA
14190913 AATATAAAATATCATGCAA
1 AATATAAAATATCATGCAA
14190932 ATTTATCATG
Statistics
Matches: 114, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
33 4 0.04
34 36 0.32
35 1 0.01
36 3 0.03
37 60 0.53
38 10 0.09
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.30
Consensus pattern (37 bp):
AATATAAAATATCATGCAATAATATCATAGAATATCA
Found at i:14190856 original size:71 final size:71
Alignment explanation
Indices: 14190771--14190931 Score: 197
Period size: 71 Copynumber: 2.3 Consensus size: 71
14190761 ATCATTCAAC
* * *
14190771 AATATAAAATATCATGCAATAATGT-A-A-AATATCATACA-AAAATTATCATGCAATAA-TATC
1 AATATAAAATATCATGCAATAATATCATAGAATATCAAACATAAAA-TATCATGCAAAAATTATC
14190831 ATAGAATAT
65 AT-GAA-AT
*
14190840 CAAATATAAAATATCATGCAATAATATCATAGAATATCAAATATAAAATATCATGCAAAAATTAT
1 --AATATAAAATATCATGCAATAATATCATAGAATATCAAACATAAAATATCATGCAAAAATTAT
*
14190905 CATGTAAT
64 CATGAAAT
14190913 AATATAAAATATCATGCAA
1 AATATAAAATATCATGCAA
14190932 ATTTATCATG
Statistics
Matches: 80, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
71 43 0.54
72 1 0.01
73 3 0.04
74 23 0.29
75 10 0.12
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.30
Consensus pattern (71 bp):
AATATAAAATATCATGCAATAATATCATAGAATATCAAACATAAAATATCATGCAAAAATTATCA
TGAAAT
Found at i:14190975 original size:30 final size:26
Alignment explanation
Indices: 14190920--14190980 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 26
14190910 AATAATATAA
*
14190920 AATATCATGCAAATTTATCATGCAAT
1 AATATCATGCAAATTTATAATGCAAT
14190946 AATATCATGCAAATATATTAATAATGCAAT
1 AATATCATGC-AA-AT-TT-ATAATGCAAT
14190976 AATAT
1 AATAT
14190981 AATATTAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 10 0.33
27 2 0.07
28 2 0.07
29 2 0.07
30 14 0.47
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (26 bp):
AATATCATGCAAATTTATAATGCAAT
Found at i:14191666 original size:20 final size:20
Alignment explanation
Indices: 14191629--14191666 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14191619 AGACATTTAA
*
14191629 CAAAAAATCCAAACAAAACC
1 CAAAAAATCCAAAAAAAACC
*
14191649 CAAAAAATCTAAAAAAAA
1 CAAAAAATCCAAAAAAAA
14191667 TTAAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.21, G:0.00, T:0.08
Consensus pattern (20 bp):
CAAAAAATCCAAAAAAAACC
Found at i:14200976 original size:17 final size:16
Alignment explanation
Indices: 14200939--14200981 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
14200929 TCAAAAGCAT
*
14200939 TTTTTTATTTCAATAA
1 TTTTTTCTTTCAATAA
14200955 CTTTTTTCTTT-AAGTAA
1 -TTTTTTCTTTCAA-TAA
14200972 TTTTTTCTTT
1 TTTTTTCTTT
14200982 TACAAGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTTTTCTTTCAATAA
Found at i:14213403 original size:29 final size:30
Alignment explanation
Indices: 14213361--14213417 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
14213351 TTTTTGTTAT
* **
14213361 TTTTATGTTTTTTAGAAAATTTTTATAATG
1 TTTTATGTTTTTTAAAAAAAGTTTATAATG
14213391 TTTTATG-TTTTTAAAAAAAGTTTATAA
1 TTTTATGTTTTTTAAAAAAAGTTTATAA
14213418 ATTTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (30 bp):
TTTTATGTTTTTTAAAAAAAGTTTATAATG
Found at i:14213423 original size:29 final size:29
Alignment explanation
Indices: 14213340--14213424 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 29
14213330 ATTTTAGATA
* * *
14213340 TTTAAAAAATATTTTTGTTATTTTTATGTT
1 TTTAAAAAA-ATTTATATAATTTTTATGTT
* * *
14213370 TTTTAGAAAATTTTTATAATGTTTTATGTT
1 TTTAAAAAAATTTATATAAT-TTTTATGTT
14213400 TTTAAAAAAAGTTTATA-AATTTTTA
1 TTTAAAAAAA-TTTATATAATTTTTA
14213425 AAAATTTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
29 14 0.30
30 27 0.59
31 5 0.11
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (29 bp):
TTTAAAAAAATTTATATAATTTTTATGTT
Found at i:14213833 original size:19 final size:19
Alignment explanation
Indices: 14213789--14213835 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
14213779 AAAATAGCAC
14213789 ATTT-AAAATTTTTAAAAA
1 ATTTGAAAATTTTTAAAAA
* *
14213807 ACTAGAAAATTTCTT-AAAA
1 ATTTGAAAATTT-TTAAAAA
14213826 ATTTGAAAAT
1 ATTTGAAAAT
14213836 AATGAACTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 2 0.09
19 19 0.83
20 2 0.09
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (19 bp):
ATTTGAAAATTTTTAAAAA
Done.