Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 75 of 109
Found at i:14991067 original size:26 final size:26
Alignment explanation
Indices: 14991029--14991081 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
14991019 TTTATCATAA
*
14991029 AAATAGTTTAATAATTTTTAAAATTTT
1 AAATAGTTAAATAA-TTTTAAAATTTT
*
14991056 AAAT-GTTAAATAATTTTAAATTTTT
1 AAATAGTTAAATAATTTTAAAATTTT
14991081 A
1 A
14991082 TTACATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
26 8 0.33
27 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
AAATAGTTAAATAATTTTAAAATTTT
Found at i:14993892 original size:22 final size:21
Alignment explanation
Indices: 14993859--14993922 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 21
14993849 TGATAAAAAT
*
14993859 AAAATAATAAATTATTATTTTAA
1 AAAATAA-AAATTA-TATATTAA
14993882 AAAATAAAAA-TATATATTAA
1 AAAATAAAAATTATATATTAA
*
14993902 AACAAAAAAAATT-TA-ATTAA
1 AA-AATAAAAATTATATATTAA
14993922 A
1 A
14993923 TTTATAAATC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
20 15 0.41
21 11 0.30
22 4 0.11
23 7 0.19
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAATAAAAATTATATATTAA
Found at i:14994149 original size:15 final size:14
Alignment explanation
Indices: 14994129--14994158 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
14994119 TCAAAGGACC
14994129 AGGTTGACTGACTTT
1 AGGTTGACTGA-TTT
14994144 AGGTTGACTGATTT
1 AGGTTGACTGATTT
14994158 A
1 A
14994159 TCTGTACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (14 bp):
AGGTTGACTGATTT
Found at i:14997318 original size:15 final size:15
Alignment explanation
Indices: 14997300--14997334 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14997290 TTTAAAATTA
*
14997300 ATATATTATATACAT
1 ATATATTATATAAAT
*
14997315 ATATTTTATATAAAT
1 ATATATTATATAAAT
14997330 ATATA
1 ATATA
14997335 AAAACCAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATATTATATAAAT
Found at i:15004589 original size:14 final size:14
Alignment explanation
Indices: 15004570--15004604 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
15004560 CTAACACGAC
15004570 ATAAAGTGACTTTA
1 ATAAAGTGACTTTA
*
15004584 ATAAAGTTACTTTA
1 ATAAAGTGACTTTA
*
15004598 ACAAAGT
1 ATAAAGT
15004605 AGCTTTAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.34
Consensus pattern (14 bp):
ATAAAGTGACTTTA
Found at i:15015801 original size:6 final size:6
Alignment explanation
Indices: 15015792--15015816 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15015782 TGTGACTTTG
15015792 GATTTT GATTTT GATTTT GATTTT G
1 GATTTT GATTTT GATTTT GATTTT G
15015817 GGTTTTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.20, T:0.64
Consensus pattern (6 bp):
GATTTT
Found at i:15018119 original size:19 final size:18
Alignment explanation
Indices: 15018091--15018126 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15018081 AGCAGAGGAA
*
15018091 CAGAAAGAGAGAATAGAC
1 CAGAAAGAGAAAATAGAC
15018109 CAGAGAAGAGAAAATAGA
1 CAGA-AAGAGAAAATAGA
15018127 GAGATATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.08, G:0.28, T:0.06
Consensus pattern (18 bp):
CAGAAAGAGAAAATAGAC
Found at i:15020358 original size:48 final size:48
Alignment explanation
Indices: 15020306--15020401 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
15020296 AATTGATGAA
*
15020306 GATGATTCAAAATTCCCAAGAGATAATGCAAAAATTAGAGGAAACTAT
1 GATGATTCAAAATTCCCAAGAGATAATGCAAAAATTAGAGAAAACTAT
15020354 GATGATTCAAAATTCCCAAGAGATAATGCAAAAATTAGAGAAAACTAT
1 GATGATTCAAAATTCCCAAGAGATAATGCAAAAATTAGAGAAAACTAT
15020402 CTTCCGACTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.23
Consensus pattern (48 bp):
GATGATTCAAAATTCCCAAGAGATAATGCAAAAATTAGAGAAAACTAT
Found at i:15023395 original size:15 final size:15
Alignment explanation
Indices: 15023377--15023407 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15023367 AACAACAATG
15023377 GTCTAAACAAGTTGA
1 GTCTAAACAAGTTGA
*
15023392 GTCTAAACAATTTGA
1 GTCTAAACAAGTTGA
15023407 G
1 G
15023408 CATTAATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (15 bp):
GTCTAAACAAGTTGA
Found at i:15025665 original size:17 final size:17
Alignment explanation
Indices: 15025629--15025669 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
15025619 TAAAAAAAAT
15025629 AAAAAATCAAATAGCTTA
1 AAAAAATCAAATAGC-TA
15025647 AAAAAAGTCAAATAG-TA
1 AAAAAA-TCAAATAGCTA
15025664 AAAAAA
1 AAAAAA
15025670 AAAGATGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.36
18 6 0.27
19 8 0.36
ACGTcount: A:0.68, C:0.07, G:0.07, T:0.17
Consensus pattern (17 bp):
AAAAAATCAAATAGCTA
Found at i:15025671 original size:19 final size:18
Alignment explanation
Indices: 15025629--15025670 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
15025619 TAAAAAAAAT
15025629 AAAAAATCAAATAGCTTAA
1 AAAAAATCAAATAGC-TAA
*
15025648 AAAAAGTCAAATAG-TAA
1 AAAAAATCAAATAGCTAA
15025665 AAAAAA
1 AAAAAA
15025671 AAGATGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 8 0.38
19 13 0.62
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.17
Consensus pattern (18 bp):
AAAAAATCAAATAGCTAA
Found at i:15026460 original size:48 final size:48
Alignment explanation
Indices: 15026408--15026592 Score: 212
Period size: 48 Copynumber: 3.8 Consensus size: 48
15026398 TTTTATTATC
15026408 TATTCTTTTTAATAATTTTCCTATTTTTTAGGGAAACACTCCCTTACT
1 TATTCTTTTTAATAATTTTCCTATTTTTTAGGGAAACACTCCCTTACT
* * * *
15026456 TATTCATTTTAATAATTCTT-TTATTTTTTAGGGAAATACTCCCATTACC
1 TATTCTTTTTAATAATT-TTCCTATTTTTTAGGGAAACACTCCC-TTACT
* * * * ** *
15026505 TATTCTTTTTAATAATTTTCTTAATTTTGAGGGAAACAATCTTTTATT
1 TATTCTTTTTAATAATTTTCCTATTTTTTAGGGAAACACTCCCTTACT
* *
15026553 TATT-TCTTTTAATAGTTATCCTATTTTTTAGGGAAACACT
1 TATTCT-TTTTAATAATTTTCCTATTTTTTAGGGAAACACT
15026593 TTTATTACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
47 1 0.01
48 74 0.65
49 39 0.34
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.51
Consensus pattern (48 bp):
TATTCTTTTTAATAATTTTCCTATTTTTTAGGGAAACACTCCCTTACT
Found at i:15026600 original size:97 final size:97
Alignment explanation
Indices: 15026389--15026612 Score: 261
Period size: 97 Copynumber: 2.3 Consensus size: 97
15026379 ATTTTACTTT
* * * * *
15026389 GGGAAACATTTTTATTATCTATTCTTTTTAATAATTTTCCTATTTTTTAGGGAAACACTCCCTTA
1 GGGAAACACTTTTATTACCTATTCTTTTTAATAATTTTCCTAATTTTGAGGGAAACAATCCCTTA
* **
15026454 CTTATTCATTTTAATAATTCTTTTATTTTTTA
66 CTTATTCATTTTAATAATTATCCTATTTTTTA
* *** * **
15026486 GGGAAATACTCCCATTACCTATTCTTTTTAATAATTTTCTTAATTTTGAGGGAAACAATCTTTTA
1 GGGAAACACTTTTATTACCTATTCTTTTTAATAATTTTCCTAATTTTGAGGGAAACAATCCCTTA
* *
15026551 TTTATTTC-TTTTAATAGTTATCCTATTTTTTA
66 CTTA-TTCATTTTAATAATTATCCTATTTTTTA
*
15026583 GGGAAACACTTTTATTACTTATTCTCTTTT
1 GGGAAACACTTTTATTACCTATTCT-TTTT
15026613 TTTTTTTTAA
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
97 96 0.93
98 7 0.07
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.52
Consensus pattern (97 bp):
GGGAAACACTTTTATTACCTATTCTTTTTAATAATTTTCCTAATTTTGAGGGAAACAATCCCTTA
CTTATTCATTTTAATAATTATCCTATTTTTTA
Found at i:15026619 original size:38 final size:36
Alignment explanation
Indices: 15026576--15026691 Score: 108
Period size: 37 Copynumber: 3.1 Consensus size: 36
15026566 AGTTATCCTA
15026576 TTTTTTAGGGAAACACTTTTATTACTTATTCTCTTTTTT
1 TTTTTTA-GGAAACACTTTTATTACTTA-T-TCTTTTTT
* * *
15026615 TTTTTTAAGAAACACTTCTAGTACTTATT-TTTTTAT
1 TTTTTTAGGAAACACTTTTATTACTTATTCTTTTT-T
* * * * *
15026651 TTTCTCTAGAAAATACTTTCATTATTTATTCTTTTTT
1 TTT-TTTAGGAAACACTTTTATTACTTATTCTTTTTT
15026688 TTTT
1 TTTT
15026692 ATTATTAAGA
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
35 5 0.08
36 6 0.10
37 23 0.37
38 22 0.35
39 7 0.11
ACGTcount: A:0.23, C:0.12, G:0.05, T:0.59
Consensus pattern (36 bp):
TTTTTTAGGAAACACTTTTATTACTTATTCTTTTTT
Found at i:15028772 original size:17 final size:17
Alignment explanation
Indices: 15028746--15028784 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
15028736 ATTATGCTTA
*
15028746 AAGTTGTGAATTATTTG
1 AAGTTATGAATTATTTG
*
15028763 AAGTTATGAATTGTTTG
1 AAGTTATGAATTATTTG
15028780 AAGTT
1 AAGTT
15028785 GTGATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (17 bp):
AAGTTATGAATTATTTG
Found at i:15029322 original size:11 final size:11
Alignment explanation
Indices: 15029306--15029391 Score: 72
Period size: 11 Copynumber: 7.6 Consensus size: 11
15029296 AGATGGACAC
15029306 TATGGATGTTT
1 TATGGATGTTT
15029317 TATGGATGAATATTT
1 TATGGATG----TTT
15029332 TAT-GATGTTT
1 TATGGATGTTT
15029342 TATGGATG--T
1 TATGGATGTTT
15029351 TATGGATGTTT
1 TATGGATGTTT
15029362 TAT-GATGTATT
1 TATGGATGT-TT
* *
15029373 TGATGCATGTTA
1 T-ATGGATGTTT
15029385 TATGGAT
1 TATGGAT
15029392 TTGTTATTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 20
0.73 0.04 0.24
Matches are distributed among these distances:
9 9 0.15
10 11 0.18
11 24 0.39
12 4 0.06
13 4 0.06
14 4 0.06
15 6 0.10
ACGTcount: A:0.24, C:0.01, G:0.24, T:0.50
Consensus pattern (11 bp):
TATGGATGTTT
Found at i:15029368 original size:19 final size:19
Alignment explanation
Indices: 15029331--15029369 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
15029321 GATGAATATT
15029331 TTATGATGTTTTATGGATG
1 TTATGATGTTTTATGGATG
15029350 TTATGGATGTTTTAT-GATG
1 TTAT-GATGTTTTATGGATG
15029369 T
1 T
15029370 ATTTGATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.54
Consensus pattern (19 bp):
TTATGATGTTTTATGGATG
Found at i:15029398 original size:45 final size:44
Alignment explanation
Indices: 15029306--15029391 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
15029296 AGATGGACAC
* *
15029306 TATGGATGTTTTATGGATGAATATTTTATGATGTTTTATGGATGT
1 TATGGATGTTTTATGGATG-ATATTTGATGATGTTATATGGATGT
15029351 TATGGATGTTTTAT-GATG-TATTTGATGCATGTTATATGGAT
1 TATGGATGTTTTATGGATGATATTTGATG-ATGTTATATGGAT
15029392 TTGTTATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 8 0.21
43 12 0.32
44 4 0.11
45 14 0.37
ACGTcount: A:0.24, C:0.01, G:0.24, T:0.50
Consensus pattern (44 bp):
TATGGATGTTTTATGGATGATATTTGATGATGTTATATGGATGT
Found at i:15032169 original size:30 final size:30
Alignment explanation
Indices: 15032133--15032189 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
15032123 AGTAAATTCT
* *
15032133 AGTCAAATTTAGTCAAACTTGATCAAATAA
1 AGTCAAAATTAGTCAAACTCGATCAAATAA
15032163 AGTCAAAATTAGTCAAACTCGATCAAA
1 AGTCAAAATTAGTCAAACTCGATCAAA
15032190 ACAGATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (30 bp):
AGTCAAAATTAGTCAAACTCGATCAAATAA
Found at i:15032178 original size:20 final size:20
Alignment explanation
Indices: 15032132--15032179 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
15032122 AAGTAAATTC
** *
15032132 TAGTCAAATTTAGTCAAACT
1 TAGTCAAATAAAGTCAAAAT
15032152 T-GATCAAATAAAGTCAAAAT
1 TAG-TCAAATAAAGTCAAAAT
15032172 TAGTCAAA
1 TAGTCAAA
15032180 CTCGATCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.04
20 21 0.91
21 1 0.04
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.29
Consensus pattern (20 bp):
TAGTCAAATAAAGTCAAAAT
Found at i:15034066 original size:41 final size:41
Alignment explanation
Indices: 15034009--15034089 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
15033999 ACATCTTGTT
* *
15034009 TGTAATTTAGTTTTGTAAATGCATAAGTATGTAATTAGTTG
1 TGTAATTTAGTTTTGTAAATGCAAAAGCATGTAATTAGTTG
*
15034050 TGTAATTTAGTTTTGTAAATGCAAAAGCATTTAATTAGTT
1 TGTAATTTAGTTTTGTAAATGCAAAAGCATGTAATTAGTT
15034090 TGTTTTTTTG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (41 bp):
TGTAATTTAGTTTTGTAAATGCAAAAGCATGTAATTAGTTG
Found at i:15034342 original size:19 final size:19
Alignment explanation
Indices: 15034309--15034360 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
15034299 CCTAGATTCG
*
15034309 AAACT-GACTCTAAACCCT
1 AAACTAGACCCTAAACCCT
*
15034327 AAACTAGACCCTAAACCTT
1 AAACTAGACCCTAAACCCT
* *
15034346 AACCTAGATCCTAAA
1 AAACTAGACCCTAAA
15034361 TTAACCTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.42, C:0.31, G:0.06, T:0.21
Consensus pattern (19 bp):
AAACTAGACCCTAAACCCT
Found at i:15034366 original size:17 final size:18
Alignment explanation
Indices: 15034330--15034376 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
15034320 AAACCCTAAA
*
15034330 CTAGACCCTAAACCTTAAC
1 CTAGATCCTAAA-CTTAAC
15034349 CTAGATCCTAAA-TTAAC
1 CTAGATCCTAAACTTAAC
*
15034366 CTAAATCCTAA
1 CTAGATCCTAA
15034377 GGCACCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
19 11 0.42
ACGTcount: A:0.40, C:0.30, G:0.04, T:0.26
Consensus pattern (18 bp):
CTAGATCCTAAACTTAAC
Found at i:15034613 original size:41 final size:42
Alignment explanation
Indices: 15034553--15034632 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
15034543 AAATATTTAA
* * *
15034553 GAATTTTTTAAATTATTTTAAAATATTTTG-GATTTTTTATT
1 GAATCTTTAAAATTATTTTAAAATATTTTGAAATTTTTTATT
* * *
15034594 GAATCTTTAAAATTCTTTTAGAATTTTTTGAAATTTTTT
1 GAATCTTTAAAATTATTTTAAAATATTTTGAAATTTTTT
15034633 TAATGTTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 25 0.78
42 7 0.22
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (42 bp):
GAATCTTTAAAATTATTTTAAAATATTTTGAAATTTTTTATT
Found at i:15036196 original size:16 final size:16
Alignment explanation
Indices: 15036177--15036266 Score: 83
Period size: 16 Copynumber: 5.7 Consensus size: 16
15036167 TTAATAACTT
15036177 AAATTTAAAATAATTC
1 AAATTTAAAATAATTC
*
15036193 AAATCT-AAATAATTC
1 AAATTTAAAATAATTC
* * * *
15036208 TAATATAAAATTACTC
1 AAATTTAAAATAATTC
*
15036224 AAATTTAAAATAATTT
1 AAATTTAAAATAATTC
* * *
15036240 AAATTTAATATGATTT
1 AAATTTAAAATAATTC
*
15036256 AAATTCAAAAT
1 AAATTTAAAAT
15036267 GACTAGAAAG
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
15 13 0.22
16 46 0.78
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (16 bp):
AAATTTAAAATAATTC
Found at i:15036204 original size:31 final size:31
Alignment explanation
Indices: 15036169--15036247 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
15036159 TTTAAACATT
*
15036169 AATAACTTAAATTTAAAATAATTCAAATCT-A
1 AATAA-TTAAATTTAAAATAACTCAAATCTAA
* * * *
15036200 AATAATTCTAATATAAAATTACTCAAATTTAA
1 AATAATT-AAATTTAAAATAACTCAAATCTAA
15036232 AATAATTTAAATTTAA
1 AATAA-TTAAATTTAA
15036248 TATGATTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
30 2 0.05
31 22 0.58
32 12 0.32
33 2 0.05
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (31 bp):
AATAATTAAATTTAAAATAACTCAAATCTAA
Found at i:15049672 original size:22 final size:22
Alignment explanation
Indices: 15049647--15049690 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
15049637 ATTTTTTGTC
*
15049647 CTTAATTTTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
*
15049669 CTTAATTCTAGGGATATAAATA
1 CTTAATTCTAGGGATACAAATA
15049691 TAAATTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (22 bp):
CTTAATTCTAGGGATACAAATA
Found at i:15052872 original size:12 final size:12
Alignment explanation
Indices: 15052855--15052885 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15052845 TAGGAACATG
15052855 AAGAACATTTTT
1 AAGAACATTTTT
15052867 AAGAACATTTTT
1 AAGAACATTTTT
15052879 AAGAACA
1 AAGAACA
15052886 AACAAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (12 bp):
AAGAACATTTTT
Found at i:15057221 original size:30 final size:30
Alignment explanation
Indices: 15057185--15057241 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15057175 TCTTTTTACA
*
15057185 GAATAATT-ATTTACGGAACAACTATTTAAG
1 GAATAATTCATTCACGGAACAA-TATTTAAG
*
15057215 GAATAATTCATTCATGGAACAATATTT
1 GAATAATTCATTCACGGAACAATATTT
15057242 TTATGAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (30 bp):
GAATAATTCATTCACGGAACAATATTTAAG
Found at i:15057459 original size:27 final size:27
Alignment explanation
Indices: 15057419--15057472 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
15057409 GGTTCTTAGG
* *
15057419 TTAATTTTATTATTAAGATATTTCAAA
1 TTAATTTCACTATTAAGATATTTCAAA
15057446 TTAATTTCACTATTAAGATATTTCAAA
1 TTAATTTCACTATTAAGATATTTCAAA
15057473 AAGTTTAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.48
Consensus pattern (27 bp):
TTAATTTCACTATTAAGATATTTCAAA
Found at i:15058096 original size:207 final size:206
Alignment explanation
Indices: 15057684--15058102 Score: 493
Period size: 207 Copynumber: 2.0 Consensus size: 206
15057674 TATTCCATTC
* * * *
15057684 AATATTCAAGATATGTAACTCTTATTCTTGAACCTATAAATAGGAGTTTTTGCAATTCATTGAAA
1 AATACTCAAGATATATAACTCCTATTCTTGAACCTATAAATAGGAGTTTTTACAATTCATTGAAA
* * * * * ** **
15057749 ACTTTTGAAACTTTGGTAGATTTTTCATAACTTTCTCTCAAACTCTCTCTGTAATCTTATCTTTT
66 ACTTTTGAAACTTTGGCAAATTTCTCACAACTTTCTCTCAAACTCTCTCTGCAATAATATCTTCC
* * * *
15057814 TAAATCTTTCTTTTAGCCCTATTCTCTTCTCGACTTAGTCTTATTTCACTACCTATCATCACTTG
131 TAAATCTTTCTTTCAACCCTATTCTCTTCTCGACTCAGTCTTATTTCACTACCTATCACCACTTG
**
15057879 TCGTTGCACTT
196 TCACTGCACTT
* **
15057890 AATACTCAAGATATATAACTCCTATTCTTGAACTTTATAAATAGGAGTTTTTACAATTCATTGGG
1 AATACTCAAGATATATAACTCCTATTCTTGAAC-CTATAAATAGGAGTTTTTACAATTCATTGAA
** * * * * *
15057955 AACTTTTGGGACTTTGGCAAATTTCTCACAACTTTCTTTGAAACTTTCTTTGCAATAATCTCTTC
65 AACTTTTGAAACTTTGGCAAATTTCTCACAACTTTCTCTCAAACTCTCTCTGCAATAATATCTTC
** *
15058020 CTAAATCTTTCTTTCAACTTTATTCTCTTC-CTGACTCAGTCTTATTTCA-TCACCTATTACCA-
130 CTAAATCTTTCTTTCAACCCTATTCTCTTCTC-GACTCAGTCTTATTTCACT-ACCTATCACCAC
15058082 TCTGTCACTGCACTT
193 T-TGTCACTGCACTT
15058097 AATACT
1 AATACT
15058103 TTAGGATCTG
Statistics
Matches: 177, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
206 33 0.19
207 144 0.81
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.43
Consensus pattern (206 bp):
AATACTCAAGATATATAACTCCTATTCTTGAACCTATAAATAGGAGTTTTTACAATTCATTGAAA
ACTTTTGAAACTTTGGCAAATTTCTCACAACTTTCTCTCAAACTCTCTCTGCAATAATATCTTCC
TAAATCTTTCTTTCAACCCTATTCTCTTCTCGACTCAGTCTTATTTCACTACCTATCACCACTTG
TCACTGCACTT
Found at i:15061277 original size:36 final size:36
Alignment explanation
Indices: 15061233--15061303 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
15061223 ACAATATTTA
* *
15061233 TTCTTTTATTTTTTA-GAGAAATATTCTCATTACTTC
1 TTCTTTTATTTTTTAGGA-AAACATTCGCATTACTTC
15061269 TTCTTTTATTTTTTAGGAAAACATTCGCATTACTT
1 TTCTTTTATTTTTTAGGAAAACATTCGCATTACTT
15061304 GTTTTCCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 30 0.94
37 2 0.06
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (36 bp):
TTCTTTTATTTTTTAGGAAAACATTCGCATTACTTC
Found at i:15061315 original size:36 final size:36
Alignment explanation
Indices: 15061233--15061317 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 36
15061223 ACAATATTTA
* * *
15061233 TTCTTTTATTTTTTAGAGAAATATTCTCATTACTTC
1 TTCTTCTATTTTTTAGAGAAACATTCGCATTACTTC
* *
15061269 TTCTTTTATTTTTTAG-GAAAACATTCGCATTACTTG
1 TTCTTCTATTTTTTAGAG-AAACATTCGCATTACTTC
15061305 TT-TTCCTATTTTT
1 TTCTT-CTATTTTT
15061318 AACACTCTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
35 3 0.07
36 40 0.93
ACGTcount: A:0.22, C:0.14, G:0.07, T:0.56
Consensus pattern (36 bp):
TTCTTCTATTTTTTAGAGAAACATTCGCATTACTTC
Found at i:15061548 original size:48 final size:49
Alignment explanation
Indices: 15061495--15061695 Score: 133
Period size: 49 Copynumber: 4.1 Consensus size: 49
15061485 TTTCTTAAAT
* * * *
15061495 TTTTTTTGGGAAACACACCC-TTACCTACTT-TTTTTAATAATTTTTTTA
1 TTTTTTAGGGAAACACACCCATCACCTA-TTCCTTTTAATAATTTTTCTA
* * * *
15061543 TTTTTTAAGGAAACACTCCCATCATCTATTCCTTTTGATAATTTTTCTA
1 TTTTTTAGGGAAACACACCCATCACCTATTCCTTTTAATAATTTTTCTA
* * * * * * *
15061592 TTTTTTAGGAAAACACTCCTATTATCTATTCCTTTTGACCAT-TTTTTTTTA
1 TTTTTTAGGGAAACACACCCATCACCTATTCCTTTT-A--ATAATTTTTCTA
* * * * *
15061643 TTTTTTTA-AGAAA-ACACTCATTTACCTATTCATTTTAATAATTTTCCTA
1 -TTTTTTAGGGAAACACACCCA-TCACCTATTCCTTTTAATAATTTTTCTA
15061692 TTTT
1 TTTT
15061696 AAAAAAAAAA
Statistics
Matches: 120, Mismatches: 25, Indels: 16
0.75 0.16 0.10
Matches are distributed among these distances:
48 25 0.21
49 58 0.48
50 5 0.04
51 23 0.19
52 9 0.08
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.51
Consensus pattern (49 bp):
TTTTTTAGGGAAACACACCCATCACCTATTCCTTTTAATAATTTTTCTA
Found at i:15061586 original size:49 final size:49
Alignment explanation
Indices: 15061526--15061661 Score: 166
Period size: 49 Copynumber: 2.7 Consensus size: 49
15061516 TACCTACTTT
*
15061526 TTTTAATAATTTTTTTATTTTTTAAGGAAACACTCCCATCATCTATTCC
1 TTTTGATAATTTTTTTATTTTTTAAGGAAACACTCCCATCATCTATTCC
* * *
15061575 TTTTGATAATTTTTCTATTTTTT-AGGAAAACACTCCTATTATCTATTCC
1 TTTTGATAATTTTTTTATTTTTTAAGG-AAACACTCCCATCATCTATTCC
* * *
15061624 TTTTGACCATTTTTTTTTATTTTTTTAAGAAAACACTC
1 TTTTGA-TA-ATTTTTTTA-TTTTTTAAGGAAACACTC
15061662 ATTTACCTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
48 3 0.04
49 47 0.64
50 1 0.01
51 7 0.09
52 14 0.19
53 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.51
Consensus pattern (49 bp):
TTTTGATAATTTTTTTATTTTTTAAGGAAACACTCCCATCATCTATTCC
Found at i:15064207 original size:15 final size:16
Alignment explanation
Indices: 15064187--15064217 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
15064177 GACCTGAGAA
15064187 TCAAAATT-AAATAAT
1 TCAAAATTGAAATAAT
15064202 TCAAAATTGAAATAAT
1 TCAAAATTGAAATAAT
15064218 CCGAGATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (16 bp):
TCAAAATTGAAATAAT
Found at i:15064293 original size:16 final size:16
Alignment explanation
Indices: 15064251--15064294 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
15064241 CAAACTAAAT
**
15064251 TAAACCCAAAACAATC
1 TAAACCCAAATTAATC
* *
15064267 TAAATCAAAATTAATC
1 TAAACCCAAATTAATC
15064283 TAAACCCAAATT
1 TAAACCCAAATT
15064295 GATCCAACTC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (16 bp):
TAAACCCAAATTAATC
Found at i:15064307 original size:32 final size:31
Alignment explanation
Indices: 15064229--15064311 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 31
15064219 CGAGATCGAT
*
15064229 ATGATCCAAACTCAAACTAAATTAAACCCAAA
1 ATGATCC-AACTCAAAATAAATTAAACCCAAA
** * * *
15064261 ACAATCTAAATCAAAATTAATCTAAACCCAAA
1 ATGATCCAACTCAAAATAAAT-TAAACCCAAA
*
15064293 TTGATCCAACTCAAAATAA
1 ATGATCCAACTCAAAATAA
15064312 CTCGAACACC
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
31 11 0.29
32 27 0.71
ACGTcount: A:0.53, C:0.23, G:0.02, T:0.22
Consensus pattern (31 bp):
ATGATCCAACTCAAAATAAATTAAACCCAAA
Found at i:15065323 original size:22 final size:22
Alignment explanation
Indices: 15065289--15065331 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
15065279 TTCTTGTTTT
* *
15065289 TTGTGTAAAGAGGATCTATCCC
1 TTGTGCAAAGAGGATCGATCCC
*
15065311 TTGTGCAAGGAGGATCGATCC
1 TTGTGCAAAGAGGATCGATCC
15065332 TGTCTAAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (22 bp):
TTGTGCAAAGAGGATCGATCCC
Found at i:15071505 original size:34 final size:34
Alignment explanation
Indices: 15071441--15071505 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
15071431 AAATTGTAGA
*
15071441 AAATTATAATGTATTCTTGGAAATTAATTTTAAG
1 AAATTATAATGTATTCTTGGAAATGAATTTTAAG
*
15071475 AAATTAT-ATGGTATT-TTAGGAAATGGATTTT
1 AAATTATAAT-GTATTCTT-GGAAATGAATTTT
15071506 GAAAAATACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (34 bp):
AAATTATAATGTATTCTTGGAAATGAATTTTAAG
Found at i:15072262 original size:81 final size:79
Alignment explanation
Indices: 15072122--15072271 Score: 178
Period size: 81 Copynumber: 1.8 Consensus size: 79
15072112 AAATTATTTT
* * * *
15072122 TATATATAAATTTAACATGTAAAATTTATATTTTTTATTATGATAATAAAAGATGTTTACTCTTT
1 TATATAAAAATTTAACATGTAAAATTTATATTTTTTA-TATAAGAATAAAACA-GTTTACTCTTT
15072187 CAAATATCATCCATTA
64 CAAATATCATCCATTA
* *
15072203 TATATAAAAATTTAACATGTAAATTTTATAATCTTTTTA-ATAAGAATAGACAACA-TTTACTTT
1 TATATAAAAATTTAACATGTAAAATTTAT-AT-TTTTTATATAAGAATA-A-AACAGTTTACTCT
15072266 TTCAAA
62 TTCAAA
15072272 CCTCATTTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
81 47 0.80
82 3 0.05
83 9 0.15
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.44
Consensus pattern (79 bp):
TATATAAAAATTTAACATGTAAAATTTATATTTTTTATATAAGAATAAAACAGTTTACTCTTTCA
AATATCATCCATTA
Found at i:15073177 original size:12 final size:13
Alignment explanation
Indices: 15073147--15073188 Score: 50
Period size: 12 Copynumber: 3.1 Consensus size: 13
15073137 AAAATCAAAT
15073147 TAAATGTAAAAAAC
1 TAAAT-TAAAAAAC
15073161 TTAAATTAAAAAA-
1 -TAAATTAAAAAAC
15073174 TAAATTAAAATAAC
1 TAAATTAAAA-AAC
15073188 T
1 T
15073189 TATTTAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 10 0.40
13 2 0.08
14 8 0.32
15 5 0.20
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (13 bp):
TAAATTAAAAAAC
Found at i:15087921 original size:154 final size:154
Alignment explanation
Indices: 15087731--15088038 Score: 571
Period size: 154 Copynumber: 2.0 Consensus size: 154
15087721 TGGGTGTTCA
* *
15087731 AGTTGAAAAAAGATTGTGACAAGTTAGTGAGGTACAAAGATTGATTAGTGGTGAAAGGGTTTTCT
1 AGTTAAAAAAAGATTGTGACAAGTTAGTGAAGTACAAAGATTGATTAGTGGTGAAAGGGTTTTCT
15087796 CAAAAACCAAGCATCGATTTTGATGAGATTTTCTCTCCAATTGTAAAGATGAGTTCCATTTAAGT
66 CAAAAACCAAGCATCGATTTTGATGAGATTTTCTCTCCAATTGTAAAGATGAGTTCCATTTAAGT
15087861 GGTATTGGGATTAACAACTAGTTT
131 GGTATTGGGATTAACAACTAGTTT
*
15087885 AGTTAAAAAAAGATTGTGACAAGTTAGTGAAGTACAAAGCTTGATTAGTGGTGAAAGGGTTTTCT
1 AGTTAAAAAAAGATTGTGACAAGTTAGTGAAGTACAAAGATTGATTAGTGGTGAAAGGGTTTTCT
* *
15087950 CAAAAACCAAGCATTGATTTTGATGAGATTTTCTCTCCAATTGTGAAGATGAGTTCCATTTAAGT
66 CAAAAACCAAGCATCGATTTTGATGAGATTTTCTCTCCAATTGTAAAGATGAGTTCCATTTAAGT
15088015 GGTATTGGGATTAACAACTAGTTT
131 GGTATTGGGATTAACAACTAGTTT
15088039 GAATCTTGAG
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
154 149 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.33
Consensus pattern (154 bp):
AGTTAAAAAAAGATTGTGACAAGTTAGTGAAGTACAAAGATTGATTAGTGGTGAAAGGGTTTTCT
CAAAAACCAAGCATCGATTTTGATGAGATTTTCTCTCCAATTGTAAAGATGAGTTCCATTTAAGT
GGTATTGGGATTAACAACTAGTTT
Found at i:15095155 original size:15 final size:15
Alignment explanation
Indices: 15095121--15095171 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
15095111 TAATTGAATA
*
15095121 TAATTTTTATACTTTT
1 TAATTTTTTTA-TTTT
*
15095137 TAATTTTTTTATTTG
1 TAATTTTTTTATTTT
* *
15095152 TAATTTGTTCATTTT
1 TAATTTTTTTATTTT
15095167 TAATT
1 TAATT
15095172 CATAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 20 0.67
16 10 0.33
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.69
Consensus pattern (15 bp):
TAATTTTTTTATTTT
Found at i:15095195 original size:17 final size:19
Alignment explanation
Indices: 15095173--15095216 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
15095163 TTTTTAATTC
*
15095173 ATAAATATAAA-ATAT-TT
1 ATAAATAAAAAGATATATT
15095190 ATAAATAAAAAGATATATT
1 ATAAATAAAAAGATATATT
*
15095209 ATTAATAA
1 ATAAATAA
15095217 CTAGATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 4 0.17
19 9 0.39
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAATAAAAAGATATATT
Found at i:15098015 original size:2 final size:2
Alignment explanation
Indices: 15098008--15098052 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
15097998 TTCTTGCTTG
15098008 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15098050 TA T
1 TA T
15098053 TTTTTGGACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15099186 original size:4 final size:4
Alignment explanation
Indices: 15099168--15099231 Score: 56
Period size: 4 Copynumber: 16.0 Consensus size: 4
15099158 TTAAAAAAGA
* * * * * * * *
15099168 ATAT ATGT ATGT ATAT ATAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
15099216 ATAT ATAT ATAT ATAT
1 ATAT ATAT ATAT ATAT
15099232 GTATGTATGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (4 bp):
ATAT
Found at i:15099506 original size:74 final size:73
Alignment explanation
Indices: 15099426--15099602 Score: 187
Period size: 74 Copynumber: 2.4 Consensus size: 73
15099416 TAAATATAAA
* * * ** * *
15099426 ACTACATTTGATATTTTAAATTTAAAAAGATATATTTA-AATTATTAGGGAATCCATTTTAAAAG
1 ACTACATTTGATATTTTAAATTTTAAAAGACATA-TCAGAATTATTA-AAAATCCACTTTAAAAA
*
15099490 ATAATATATC
64 ATAATATACC
* **
15099500 ACTACATTTAAGAT-TTTTAGATTTTAAAAGACATATCAGAATTATTAAAAATTTACTTTAAAAA
1 ACTACATTT--GATATTTTAAATTTTAAAAGACATATCAGAATTATTAAAAATCCACTTTAAAAA
15099564 ATAATATACC
64 ATAATATACC
*
15099574 ACTACATGTGATATTTTAAAATTTTAAAA
1 ACTACATTTGATATTTT-AAATTTTAAAA
15099603 TACAATGTCT
Statistics
Matches: 85, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
72 3 0.04
73 4 0.05
74 49 0.58
75 26 0.31
76 3 0.04
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.40
Consensus pattern (73 bp):
ACTACATTTGATATTTTAAATTTTAAAAGACATATCAGAATTATTAAAAATCCACTTTAAAAAAT
AATATACC
Found at i:15101684 original size:2 final size:2
Alignment explanation
Indices: 15101677--15101704 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15101667 AAAATCATAA
15101677 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15101705 TCATCTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15102170 original size:20 final size:20
Alignment explanation
Indices: 15102145--15102186 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
15102135 TTTGATTTCC
15102145 TGCAATAATTCCAATCAGTT
1 TGCAATAATTCCAATCAGTT
15102165 TGCAATAATTCCAATCAGTT
1 TGCAATAATTCCAATCAGTT
15102185 TG
1 TG
15102187 GGTGTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGCAATAATTCCAATCAGTT
Found at i:15102391 original size:267 final size:267
Alignment explanation
Indices: 15101916--15102436 Score: 1033
Period size: 267 Copynumber: 2.0 Consensus size: 267
15101906 GTTTTTAACT
15101916 TTTGGGTGTAAAAATGAAGGATTCTTGGCTTTTGAAAAAAATAAGTAGGGGGGACGTTTTTGAAT
1 TTTGGGTGTAAAAATGAAGGATTCTTGGCTTTTGAAAAAAATAAGTAGGGGGGACGTTTTTGAAT
15101981 TCTTCAGCCATATCACCAGAGGTACCACATCAGCTACGTTAAACCCATCTTAAGCTTAATTTTCT
66 TCTTCAGCCATATCACCAGAGGTACCACATCAGCTACGTTAAACCCATCTTAAGCTTAATTTTCT
15102046 GGAAGCCTGCAATGCATCTACATATTTGTTTAAAAAAAAAAATCAACCCTTTAATCCTCTTAAAT
131 GGAAGCCTGCAATGCATCTACATATTTGTTTAAAAAAAAAAATCAACCCTTTAATCCTCTTAAAT
15102111 GCTTTCAATCCATCTGAACAGTCATTTGATTTCCTGCAATAATTCCAATCAGTTTGCAATAATTC
196 GCTTTCAATCCATCTGAACAGTCATTTGATTTCCTGCAATAATTCCAATCAGTTTGCAATAATTC
15102176 CAATCAG
261 CAATCAG
15102183 TTTGGGTGTAAAAATGAAGGATTCTTGGCTTTTGAAAAAAATAAGTAGGGGGGACGTTTTTGAAT
1 TTTGGGTGTAAAAATGAAGGATTCTTGGCTTTTGAAAAAAATAAGTAGGGGGGACGTTTTTGAAT
15102248 TCTTCAGCCATATCACCAGAGGTACCACATCAGCTACGTTAAACCCATCTTAAGCTTAATTTTCT
66 TCTTCAGCCATATCACCAGAGGTACCACATCAGCTACGTTAAACCCATCTTAAGCTTAATTTTCT
15102313 GGAAGCCTGCAATGCATCTACATATTTGTTTAAAAAAAAAAATCAACCCTTTAATCCTCTTAAAT
131 GGAAGCCTGCAATGCATCTACATATTTGTTTAAAAAAAAAAATCAACCCTTTAATCCTCTTAAAT
*
15102378 GCTTTCAATCCATCTGAACAGTCATTTGATTTCCTTCAATAATTCCAATCAGTTTGCAA
196 GCTTTCAATCCATCTGAACAGTCATTTGATTTCCTGCAATAATTCCAATCAGTTTGCAA
15102437 ATTTCTTTAC
Statistics
Matches: 253, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 253 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (267 bp):
TTTGGGTGTAAAAATGAAGGATTCTTGGCTTTTGAAAAAAATAAGTAGGGGGGACGTTTTTGAAT
TCTTCAGCCATATCACCAGAGGTACCACATCAGCTACGTTAAACCCATCTTAAGCTTAATTTTCT
GGAAGCCTGCAATGCATCTACATATTTGTTTAAAAAAAAAAATCAACCCTTTAATCCTCTTAAAT
GCTTTCAATCCATCTGAACAGTCATTTGATTTCCTGCAATAATTCCAATCAGTTTGCAATAATTC
CAATCAG
Found at i:15111430 original size:58 final size:60
Alignment explanation
Indices: 15111320--15111580 Score: 208
Period size: 72 Copynumber: 4.2 Consensus size: 60
15111310 TTTTTTTAGA
* * * * *
15111320 ATTTTATTTTTAAGGAAAATTGGTACTTCCAACTTTTT-TTCAAAATGCTTTTTTTGAAA-
1 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAAT-ATTTTTTTGAAAT
* *
15111379 A-TTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAACTATTTTTATTTTGAAATTT
1 ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAA--ATATTT-TTTTGAAA---
15111443 TTTTT
60 ----T
* * * *
15111448 ATTTTTTATTTTCAAGGAAAATTGATACTTTTAATTTTTTTTCTTAAAAATGTTTTTTTGAAAA
1 A--TTTTATTTTCAAGGAAAATTGATACTTTCAA--CTTTTTCTTAAAAATATTTTTTTGAAAT
* * * *
15111512 ATTTTATTTTGAAGGACAATT-AGTACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAT
1 ATTTTATTTTCAAGGAAAATTGA-TACTTTCAACTTTTTCTTAAAAATATTTTTTTGAAAT
15111572 -TTTTATTTT
1 ATTTTATTTT
15111581 AAAGAGATCA
Statistics
Matches: 165, Mismatches: 19, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
58 32 0.19
59 15 0.09
60 26 0.16
61 11 0.07
62 26 0.16
64 1 0.01
69 1 0.01
71 8 0.05
72 34 0.21
74 11 0.07
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.52
Consensus pattern (60 bp):
ATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTTTGAAAT
Found at i:15111527 original size:62 final size:59
Alignment explanation
Indices: 15111451--15111580 Score: 145
Period size: 62 Copynumber: 2.2 Consensus size: 59
15111441 TTTTTTTATT
* * * * *
15111451 TTTTATTTTCAAGGAAAATT-GATACTTTTAATTTTTTTTCTTAAAAATGTTTTTTTGAAAAA
1 TTTTATTTTCAAGGAAAATTAG-TACTTTCAA--CTTTTTCTCAAAAATATTTTTTAG-AAAA
* * *
15111513 TTTTATTTTGAAGGACAATTAGTACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAT
1 TTTTATTTTCAAGGAAAATTAGTACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAA
15111572 TTTTATTTT
1 TTTTATTTT
15111581 AAAGAGATCA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
59 12 0.20
60 20 0.34
62 26 0.44
63 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.53
Consensus pattern (59 bp):
TTTTATTTTCAAGGAAAATTAGTACTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAA
Found at i:15111548 original size:134 final size:130
Alignment explanation
Indices: 15111321--15111564 Score: 330
Period size: 134 Copynumber: 1.8 Consensus size: 130
15111311 TTTTTTAGAA
* *
15111321 TTTTATTTTTAAGGAAAATTGGTACTTCCAACTTTTTTTCAAAATGCTTTTTTTGAAAATTTATT
1 TTTTATTTTCAAGGAAAATTGATACTTCCAACTTTTTTTCAAAATGCTTTTTTTGAAAATTTATT
* *
15111386 TTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAACTATTTTTATTTTGAAATTTTTTTTATT
66 TTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTATTTTGAAATTTTTTTTATT
** *
15111451 TTTTATTTTCAAGGAAAATTGATACTTTTAATTTTTTTTCTTAAAAATG-TTTTTTTGAAAAATT
1 TTTTATTTTCAAGGAAAATTGATACTTCCAACTTTTTTTC---AAAATGCTTTTTTTG-AAAA-T
* * *
15111515 TTATTTTGAAGGACAATT-AGTACTTTCAACTTTTTCTCAAAAATATTTTT
61 TTATTTTCAAGGAAAATTGA-TACTTTCAACTTTTCCTCAAAAATATTTTT
15111565 TAGAAATTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
130 35 0.36
132 8 0.08
133 11 0.11
134 44 0.45
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.52
Consensus pattern (130 bp):
TTTTATTTTCAAGGAAAATTGATACTTCCAACTTTTTTTCAAAATGCTTTTTTTGAAAATTTATT
TTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTATTTTGAAATTTTTTTTATT
Found at i:15112539 original size:17 final size:15
Alignment explanation
Indices: 15112498--15112541 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
15112488 ACAGATAACC
*
15112498 AAAAAAAATAAAAAA
1 AAAAAAAATGAAAAA
15112513 AATAAAAAATGAAAATA
1 AA-AAAAAATGAAAA-A
15112530 AAAATAAAATGA
1 AAAA-AAAATGA
15112542 GCTAATTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 13 0.52
17 10 0.40
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.14
Consensus pattern (15 bp):
AAAAAAAATGAAAAA
Found at i:15112996 original size:2 final size:2
Alignment explanation
Indices: 15112991--15113015 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15112981 TATATACTTT
15112991 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
15113016 CACGATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15113536 original size:28 final size:27
Alignment explanation
Indices: 15113492--15113551 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
15113482 TGATTAAATC
* *
15113492 TTAATTATATATAAAATAATATTTTTA
1 TTAATTAGATATAAAATAATAATTTTA
*
15113519 TTAATTAAGATATTAAATAATAATTTTA
1 TTAATT-AGATATAAAATAATAATTTTA
15113547 TTAAT
1 TTAAT
15113552 ATAATAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TTAATTAGATATAAAATAATAATTTTA
Found at i:15114518 original size:20 final size:18
Alignment explanation
Indices: 15114479--15114524 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
15114469 AAATAGACCT
15114479 ATATTAAAATTTTTTAAA
1 ATATTAAAATTTTTTAAA
*
15114497 ATATTCAAAATATTTTTTAA
1 ATATT-AAAAT-TTTTTAAA
15114517 ATA-TAAAA
1 ATATTAAAA
15114525 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 6 0.24
20 10 0.40
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATTAAAATTTTTTAAA
Found at i:15115806 original size:12 final size:12
Alignment explanation
Indices: 15115791--15115824 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15115781 GATCATTACC
15115791 GTGATGATGATG
1 GTGATGATGATG
*
15115803 GTGATGGTGATG
1 GTGATGATGATG
*
15115815 ATGATGATGA
1 GTGATGATGA
15115825 AAAATTAGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (12 bp):
GTGATGATGATG
Found at i:15118239 original size:22 final size:22
Alignment explanation
Indices: 15118196--15118240 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
15118186 TGAAAATAAT
* *
15118196 ACAGTTTAAAATTTTAGTAAAA
1 ACAGTTTAAAATTTGAGCAAAA
15118218 ACAGTTTACAAATTTGA-CAAAA
1 ACAGTTTA-AAATTTGAGCAAAA
15118240 A
1 A
15118241 TAAAAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (22 bp):
ACAGTTTAAAATTTGAGCAAAA
Found at i:15118240 original size:23 final size:22
Alignment explanation
Indices: 15118196--15118240 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
15118186 TGAAAATAAT
* **
15118196 ACAGTTTAAAATTTTAGTAAAA
1 ACAGTTTAAAATTTGACAAAAA
15118218 ACAGTTTACAAATTTGACAAAAA
1 ACAGTTTA-AAATTTGACAAAAA
15118241 TAAAAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (22 bp):
ACAGTTTAAAATTTGACAAAAA
Found at i:15124678 original size:26 final size:26
Alignment explanation
Indices: 15124639--15124688 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15124629 TAAATTATTA
* *
15124639 AAAACTTTATTTAATATTATATTTTT
1 AAAACTTTATTTAAAATAATATTTTT
15124665 AAAACTTT-TCTTAAAATAATATTT
1 AAAACTTTAT-TTAAAATAATATTT
15124689 AAATTATCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (26 bp):
AAAACTTTATTTAAAATAATATTTTT
Found at i:15125427 original size:88 final size:87
Alignment explanation
Indices: 15125320--15125484 Score: 294
Period size: 88 Copynumber: 1.9 Consensus size: 87
15125310 AGAGCAATGT
* *
15125320 ATGGCGTAAAACTTGGGGGATTGCATTTGGGATTGGGCATGCCTGCTTGCACATCAGCTTTTGCA
1 ATGGCGTAAAACTTGGGGGATTGCATATGGGATTGGGCATGCCTGCTGGCACATCAGCTTTTGCA
15125385 GGTTTTTTTTTTTATTATTATTA
66 -GTTTTTTTTTTTATTATTATTA
*
15125408 ATGGCGTAAAACTTGGGGGATTGCATATGGGATTTGGCATGCCTGCTGGCACATCAGCTTTTGCA
1 ATGGCGTAAAACTTGGGGGATTGCATATGGGATTGGGCATGCCTGCTGGCACATCAGCTTTTGCA
15125473 GTTTTTTTTTTT
66 GTTTTTTTTTTT
15125485 CTTTTTTAAT
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
87 12 0.16
88 62 0.84
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.41
Consensus pattern (87 bp):
ATGGCGTAAAACTTGGGGGATTGCATATGGGATTGGGCATGCCTGCTGGCACATCAGCTTTTGCA
GTTTTTTTTTTTATTATTATTA
Found at i:15126429 original size:2 final size:2
Alignment explanation
Indices: 15126422--15126453 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
15126412 TCAACTCATG
15126422 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15126454 TGCTACAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15139173 original size:19 final size:19
Alignment explanation
Indices: 15139151--15139191 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
15139141 CAAAAATTCC
*
15139151 AATTTTGATTTTTAATTTT
1 AATTTTAATTTTTAATTTT
*
15139170 AATTTTAATTTTTGATTTT
1 AATTTTAATTTTTAATTTT
15139189 AAT
1 AAT
15139192 ATGTTGGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
AATTTTAATTTTTAATTTT
Found at i:15139189 original size:13 final size:13
Alignment explanation
Indices: 15139153--15139191 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
15139143 AAAATTCCAA
15139153 TTTTGATTTTTAA-
1 TTTTGA-TTTTAAT
*
15139166 TTTTAATTTTAAT
1 TTTTGATTTTAAT
15139179 TTTTGATTTTAAT
1 TTTTGATTTTAAT
15139192 ATGTTGGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (13 bp):
TTTTGATTTTAAT
Found at i:15139826 original size:20 final size:19
Alignment explanation
Indices: 15139797--15139854 Score: 82
Period size: 20 Copynumber: 3.0 Consensus size: 19
15139787 TTTTGCAAGA
*
15139797 ATTTGCATGACTAATATTAT
1 ATTTGTATGA-TAATATTAT
15139817 ATTTGTATGATTAATATTAT
1 ATTTGTATGA-TAATATTAT
15139837 ATTTGTATGATAAT-TTAT
1 ATTTGTATGATAATATTAT
15139855 TATGACTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.11
19 4 0.11
20 28 0.78
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.52
Consensus pattern (19 bp):
ATTTGTATGATAATATTAT
Found at i:15139937 original size:20 final size:21
Alignment explanation
Indices: 15139903--15139941 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
15139893 TAAATTACTT
15139903 AATTGCATGATTTATTAATTC
1 AATTGCATGATTTATTAATTC
15139924 AATTGCATGA-TTATTAAT
1 AATTGCATGATTTATTAAT
15139942 ATATTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (21 bp):
AATTGCATGATTTATTAATTC
Found at i:15140029 original size:24 final size:24
Alignment explanation
Indices: 15139996--15140176 Score: 133
Period size: 24 Copynumber: 7.4 Consensus size: 24
15139986 TAATTTATTA
* *
15139996 ATTTAATTGCATGATTATTGATAT
1 ATTTATTTGCATGATTATTAATAT
* *
15140020 GTTTATTTGCACATGATTACTAATAT
1 ATTTATTTG--CATGATTATTAATAT
* *
15140046 A-TTATTTGTATGATTACCTAATAT
1 ATTTATTTGCATGATTA-TTAATAT
*
15140070 ATTTGTGTGTG-ATTGCATGTTATTAATAT
1 ATTTAT-T-TGCA-TG-A--TTATTAATAT
15140099 ATTTATTTGCATGATTATTAATAT
1 ATTTATTTGCATGATTATTAATAT
*
15140123 ATTTATTTGTATGATT-TATAA-AT
1 ATTTATTTGCATGATTAT-TAATAT
*
15140146 A--TATTTGCAT-AGTCATTAATAT
1 ATTTATTTGCATGA-TTATTAATAT
15140168 ATTTATTTG
1 ATTTATTTG
15140177 TGATTTATTT
Statistics
Matches: 128, Mismatches: 12, Indels: 34
0.74 0.07 0.20
Matches are distributed among these distances:
20 1 0.01
21 12 0.09
22 4 0.03
23 11 0.09
24 49 0.38
25 10 0.08
26 16 0.12
27 8 0.06
28 3 0.02
29 11 0.09
30 3 0.02
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (24 bp):
ATTTATTTGCATGATTATTAATAT
Found at i:15140131 original size:103 final size:102
Alignment explanation
Indices: 15139929--15140131 Score: 264
Period size: 101 Copynumber: 2.0 Consensus size: 102
15139919 AATTCAATTG
* *
15139929 CATGATTATTAATATATTTATTTGAACGACTACCTAATATATTTATGTGTAATTCCATAATTTAT
1 CATGATTACTAATATATTTATTTGAACGACTACCTAATATATTTATGTGTAATTCCATAATTTAA
* *
15139994 TAATTTAATTGCATGATTATTGATATGTTTATTTGCA
66 TAATTTAATTGCATGATTATTAATATATTTATTTGCA
* * * * * * **
15140031 CATGATTACTAATATA-TTATTTGTATGATTACCTAATATATTTGTGTGTGATTGCATGTTATTA
1 CATGATTACTAATATATTTATTTGAACGACTACCTAATATATTTATGTGTAATTCCATAAT-TTA
*
15140095 ATATATTTATTTGCATGATTATTAATATATTTATTTG
65 ATA-ATTTAATTGCATGATTATTAATATATTTATTTG
15140132 TATGATTTAT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
101 36 0.42
102 20 0.23
103 30 0.35
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (102 bp):
CATGATTACTAATATATTTATTTGAACGACTACCTAATATATTTATGTGTAATTCCATAATTTAA
TAATTTAATTGCATGATTATTAATATATTTATTTGCA
Found at i:15140138 original size:101 final size:101
Alignment explanation
Indices: 15139901--15140131 Score: 256
Period size: 101 Copynumber: 2.3 Consensus size: 101
15139891 CATAAATTAC
* * * *
15139901 TTAATTGCATGA-T-TTATTA-ATTCAATTG-CATGATTATTAATATATTTATTTGAACGACTAC
1 TTAATTGCATGATTATTAATATATTTATTTGACATGATTACTAATATATTTATTTGAACGACTAC
*
15139962 CTAATATATTTATGTGTAATTCCATAATTTATTAAT
66 CTAATATATTTATGTGTAATTCCATAATTTAATAAT
* * * * *
15139998 TTAATTGCATGATTATTGATATGTTTATTTGCACATGATTACTAATATA-TTATTTGTATGATTA
1 TTAATTGCATGATTATTAATATATTTATTTG-ACATGATTACTAATATATTTATTTGAACGACTA
* * * **
15140062 CCTAATATATTTGTGTGTGATTGCATGTTATTAATATAT
65 CCTAATATATTTATGTGTAATTCCATAAT-TTAATA-AT
*
15140101 TTATTTGCATGATTATTAATATATTTATTTG
1 TTAATTGCATGATTATTAATATATTTATTTG
15140132 TATGATTTAT
Statistics
Matches: 109, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
97 12 0.11
98 1 0.01
99 4 0.04
100 6 0.06
101 36 0.33
102 20 0.18
103 30 0.28
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (101 bp):
TTAATTGCATGATTATTAATATATTTATTTGACATGATTACTAATATATTTATTTGAACGACTAC
CTAATATATTTATGTGTAATTCCATAATTTAATAAT
Found at i:15150659 original size:4 final size:4
Alignment explanation
Indices: 15150650--15150733 Score: 54
Period size: 4 Copynumber: 21.5 Consensus size: 4
15150640 TACTTCTCCT
* *
15150650 AATA AATA AATA AAT- AATCA AACAA AATA AAT- CATA AATA AATA AATA
1 AATA AATA AATA AATA AAT-A AA-TA AATA AATA AATA AATA AATA AATA
* *
15150698 AGT- AATA AACTAA AATA AA-A AA-A CATA AA-A AATA AA
1 AATA AATA AA-T-A AATA AATA AATA AATA AATA AATA AA
15150734 ATGAAAAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
3 15 0.24
4 38 0.60
5 7 0.11
6 3 0.05
ACGTcount: A:0.73, C:0.06, G:0.01, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:15150663 original size:8 final size:8
Alignment explanation
Indices: 15150650--15150733 Score: 54
Period size: 7 Copynumber: 10.8 Consensus size: 8
15150640 TACTTCTCCT
15150650 AATAAATA
1 AATAAATA
15150658 AATAAAT-
1 AATAAATA
*
15150665 AATCAAACAA
1 AAT-AAA-TA
15150675 AATAAAT-
1 AATAAATA
*
15150682 CATAAATA
1 AATAAATA
15150690 AATAAATA
1 AATAAATA
*
15150698 AGT-AATA
1 AATAAATA
15150705 AACTAAAATA
1 AA-T-AAATA
15150715 AA-AAA-A
1 AATAAATA
*
15150721 CATAAA-A
1 AATAAATA
15150728 AATAAA
1 AATAAA
15150734 ATGAAAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
6 2 0.03
7 26 0.43
8 20 0.33
9 3 0.05
10 9 0.15
ACGTcount: A:0.73, C:0.06, G:0.01, T:0.20
Consensus pattern (8 bp):
AATAAATA
Found at i:15151470 original size:21 final size:21
Alignment explanation
Indices: 15151445--15151484 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15151435 AAAACTAGGA
15151445 TTATCATGAAAAATATAAAAT
1 TTATCATGAAAAATATAAAAT
* *
15151466 TTATCTTGAAAAATTTAAA
1 TTATCATGAAAAATATAAA
15151485 CTCAAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
TTATCATGAAAAATATAAAAT
Found at i:15151701 original size:17 final size:16
Alignment explanation
Indices: 15151675--15151707 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
15151665 TATATGTATA
15151675 TTAAAATAAAATAAAT
1 TTAAAATAAAATAAAT
15151691 TTAACAATAAAATAAAT
1 TTAA-AATAAAATAAAT
15151708 AATAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAAAATAAAATAAAT
Found at i:15154988 original size:62 final size:62
Alignment explanation
Indices: 15154891--15155009 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
15154881 ATATTCAGTG
* * * **
15154891 AAAATGGTTTAAGATGCTCATTCTTAACAGTAATCACCAAAATTTTTGAGATTTTTCACATA
1 AAAATGGTTTAAAATACTCATTCTTAACAATAATCACCAAAATTTTCAAGATTTTTCACATA
* *
15154953 AAAATGGTTTAAAATATTCATTCTTAACAATAATCATCAAAATTTTCAAGATTTTTC
1 AAAATGGTTTAAAATACTCATTCTTAACAATAATCACCAAAATTTTCAAGATTTTTC
15155010 TCATGCATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (62 bp):
AAAATGGTTTAAAATACTCATTCTTAACAATAATCACCAAAATTTTCAAGATTTTTCACATA
Found at i:15163274 original size:15 final size:16
Alignment explanation
Indices: 15163254--15163285 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15163244 ATAAATAAGG
15163254 GAAAAAAGA-TAAATA
1 GAAAAAAGATTAAATA
15163269 GAAAAAAGATTAAATA
1 GAAAAAAGATTAAATA
15163285 G
1 G
15163286 CACAAGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (16 bp):
GAAAAAAGATTAAATA
Found at i:15166061 original size:27 final size:25
Alignment explanation
Indices: 15166031--15166083 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
15166021 TATACAATTC
15166031 AACAAATGAAAAAAAAATTATAATTTA
1 AACAAATGAAAAAAAAA-TA-AATTTA
* *
15166058 AACAATTGAAATAAAAATAAATTTA
1 AACAAATGAAAAAAAAATAAATTTA
15166083 A
1 A
15166084 CTTCGACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 2 0.08
27 15 0.62
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (25 bp):
AACAAATGAAAAAAAAATAAATTTA
Found at i:15171373 original size:49 final size:51
Alignment explanation
Indices: 15171318--15171414 Score: 139
Period size: 49 Copynumber: 1.9 Consensus size: 51
15171308 TTATATTTTG
15171318 ATTTATAT-TCAAATAA-ATCTTTATTTCAAAT-AAAAAAA-TAATTTACGTT
1 ATTTATATCT-AAA-AAGATCTTTATTTCAAATGAAAAAAAGTAATTTACGTT
*
15171367 ATTTATATCTAAAAAGATTTTTATTTCAAATGAAAAAAAGTAATTTAC
1 ATTTATATCTAAAAAGATCTTTATTTCAAATGAAAAAAAGTAATTTAC
15171415 ATTAAGAACT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
48 2 0.05
49 25 0.58
50 8 0.19
51 8 0.19
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.41
Consensus pattern (51 bp):
ATTTATATCTAAAAAGATCTTTATTTCAAATGAAAAAAAGTAATTTACGTT
Found at i:15171553 original size:3 final size:3
Alignment explanation
Indices: 15171545--15171597 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
15171535 TTTAAGGATT
15171545 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15171593 TTA TT
1 TTA TT
15171598 TTAGTCTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15173593 original size:24 final size:24
Alignment explanation
Indices: 15173566--15173614 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
15173556 TATATTTTGC
*
15173566 CATAGGAGATATTTAGCTTTTACT
1 CATAGAAGATATTTAGCTTTTACT
15173590 CATAGAAGATATTTAGCTTTTACT
1 CATAGAAGATATTTAGCTTTTACT
15173614 C
1 C
15173615 TATCTTCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (24 bp):
CATAGAAGATATTTAGCTTTTACT
Found at i:15174919 original size:3 final size:3
Alignment explanation
Indices: 15174911--15174958 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
15174901 GAGACAAGGC
*
15174911 AGA AGA AGA AGA GGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
15174959 GTAAGAGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:15176340 original size:3 final size:3
Alignment explanation
Indices: 15176334--15176374 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
15176324 ATATACAAAC
15176334 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
15176375 TAGTATTAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:15179715 original size:28 final size:28
Alignment explanation
Indices: 15179675--15179732 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
15179665 TATTATAGAC
*
15179675 TTATTTCATCTAGATTGTGTACTGCCAT
1 TTATTTCATCTAGATTATGTACTGCCAT
* *
15179703 TTATTTCATCTAGATTATGTATTGCTAT
1 TTATTTCATCTAGATTATGTACTGCCAT
15179731 TT
1 TT
15179733 TCTTAATTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.14, G:0.12, T:0.52
Consensus pattern (28 bp):
TTATTTCATCTAGATTATGTACTGCCAT
Found at i:15179760 original size:6 final size:6
Alignment explanation
Indices: 15179749--15179773 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15179739 TTAGGCAATG
15179749 AAGAAA AAGAAA AAGAAA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA A
15179774 TAAAAGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:15183935 original size:12 final size:12
Alignment explanation
Indices: 15183918--15183966 Score: 71
Period size: 12 Copynumber: 4.0 Consensus size: 12
15183908 TTTATATAAT
15183918 AAAAATTAAATA
1 AAAAATTAAATA
15183930 AAAAATTAAATA
1 AAAAATTAAATA
*
15183942 AAATATTACAATA
1 AAAAATTA-AATA
*
15183955 AAAATTTAAATA
1 AAAAATTAAATA
15183967 TTATACTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
12 23 0.70
13 10 0.30
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAATTAAATA
Found at i:15183963 original size:25 final size:23
Alignment explanation
Indices: 15183915--15183966 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 23
15183905 TAATTTATAT
15183915 AATAAAAATTAAATAAAAAATTA
1 AATAAAAATTAAATAAAAAATTA
*
15183938 AATAAAATATTACAATAAAAATTTA
1 AATAAAA-ATTA-AATAAAAAATTA
15183963 AATA
1 AATA
15183967 TTATACTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.27
24 4 0.15
25 15 0.58
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAAAAATTAAATAAAAAATTA
Found at i:15195959 original size:22 final size:21
Alignment explanation
Indices: 15195934--15195989 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
15195924 GGAATTTGAT
*
15195934 GAAATAAAAAATAATAATATTA
1 GAAATAAAAAATAA-AATACTA
*
15195956 GAAATAGAAAAACAAAATACTA
1 GAAATA-AAAAATAAAATACTA
*
15195978 -AAACAAAAAATA
1 GAAATAAAAAATA
15195990 TTCAAAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.21
21 4 0.14
22 12 0.41
23 7 0.24
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.18
Consensus pattern (21 bp):
GAAATAAAAAATAAAATACTA
Found at i:15200321 original size:87 final size:87
Alignment explanation
Indices: 15200166--15200346 Score: 290
Period size: 87 Copynumber: 2.1 Consensus size: 87
15200156 ACATCAAGCC
* * * **
15200166 CAAAATACCTCAACAACTACTTCAAAACGATCAGTACTAAATTTGACTAAAAATCCAAAAGAAAG
1 CAAACTACCTCAACAACTACTTCAAAAAGATCAATACTAAATTAAACTAAAAATCCAAAAGAAAG
*
15200231 GGAAGGAGAAAAGGCCAATTTT
66 GGAAGGAGAAAAAGCCAATTTT
* *
15200253 CAAACTACTTCAACAACTACTTCAAAAAGATCAATACTAAATTAAACTAAAAATCCAAATGAAAG
1 CAAACTACCTCAACAACTACTTCAAAAAGATCAATACTAAATTAAACTAAAAATCCAAAAGAAAG
15200318 GGAAGGAGAAAAAGCCAATTTT
66 GGAAGGAGAAAAAGCCAATTTT
15200340 CAAACTA
1 CAAACTA
15200347 TATGGGAATA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.20
Consensus pattern (87 bp):
CAAACTACCTCAACAACTACTTCAAAAAGATCAATACTAAATTAAACTAAAAATCCAAAAGAAAG
GGAAGGAGAAAAAGCCAATTTT
Found at i:15200652 original size:2 final size:2
Alignment explanation
Indices: 15200647--15200691 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
15200637 GTGTGTGTCT
* * *
15200647 AC AC AC AC AC AC AC AC AC AC AC AC AC AT AG AC AC AC AC TC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
15200689 AC A
1 AC A
15200692 ATAGGCAGGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.49, C:0.44, G:0.02, T:0.04
Consensus pattern (2 bp):
AC
Found at i:15200763 original size:2 final size:2
Alignment explanation
Indices: 15200758--15200811 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
15200748 TGTGGTCATG
15200758 TC TC TC TC TC T- TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
15200799 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
15200812 TTATATGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:15200824 original size:2 final size:2
Alignment explanation
Indices: 15200813--15200854 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
15200803 TCTCTCTCTT
* *
15200813 TA TA TG TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15200855 GAGAGAGAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15216642 original size:18 final size:18
Alignment explanation
Indices: 15216619--15216656 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
15216609 AGTTTTAAAT
15216619 TACAAGCATAAGCAAAAG
1 TACAAGCATAAGCAAAAG
15216637 TACAAGCATAAGCAAAAG
1 TACAAGCATAAGCAAAAG
15216655 TA
1 TA
15216657 TAATCCATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (18 bp):
TACAAGCATAAGCAAAAG
Found at i:15217415 original size:80 final size:81
Alignment explanation
Indices: 15217328--15217489 Score: 247
Period size: 86 Copynumber: 2.0 Consensus size: 81
15217318 AATCCACTCA
15217328 ATTACTACTATTTACATGC-TTTTTGTATGTAAAAAGC-TCATCTGTTTTATACTACTTTGAAAA
1 ATTACTACTATTTACATGCTTTTTTGTATGTAAAAAGCAT-ATCTGTTTTATACTACTTTGAAAA
15217391 TTATAAGCTAAGGCTCG
65 TTATAAGCTAAGGCTCG
*
15217408 ATTACTACTATTTACATGCTTTTTGTTTTTGTATGTAAAAAGCATGTCTGTTTTATACTACTTTG
1 ATTACTACTATTTACATGC----T-TTTTTGTATGTAAAAAGCATATCTGTTTTATACTACTTTG
15217473 AAAATTATAAGCTAAGG
61 AAAATTATAAGCTAAGG
15217490 TTTCATTGAA
Statistics
Matches: 74, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
80 19 0.26
86 54 0.73
87 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (81 bp):
ATTACTACTATTTACATGCTTTTTTGTATGTAAAAAGCATATCTGTTTTATACTACTTTGAAAAT
TATAAGCTAAGGCTCG
Found at i:15217548 original size:30 final size:30
Alignment explanation
Indices: 15217513--15217574 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
15217503 ATTTGTATGA
*
15217513 TAGGTAGTCATATAATCAAGACTATTTGTC
1 TAGGTAGTCATATAATCAACACTATTTGTC
15217543 TAGGTAGTCATATAATCAACACTATTTGTC
1 TAGGTAGTCATATAATCAACACTATTTGTC
15217573 TA
1 TA
15217575 ACTTCATCCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (30 bp):
TAGGTAGTCATATAATCAACACTATTTGTC
Found at i:15218367 original size:2 final size:2
Alignment explanation
Indices: 15218360--15218393 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15218350 ATCCCATGTA
15218360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15218394 TAGATAAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15223089 original size:281 final size:276
Alignment explanation
Indices: 15222588--15223132 Score: 892
Period size: 281 Copynumber: 2.0 Consensus size: 276
15222578 TCTTATTTTT
*
15222588 CAATAAAAAGGTACTATAATAAGATATAATCTAATGTCTGTGATATAATAAACCACACATTTTAC
1 CAATAAAAAGCTACTATAATAAGATATAATCTAATGTCTGTGATATAATAAACCACACATTTTAC
* *
15222653 AAGTCCGAGATGGTTTTGTTTTTACCTTTTTATTTACCTTTTGCTTTTAAAAGCAAAAAGTAAAA
66 AAGTCCAAGATGGTTTTGTTTTTACCATTTTATTTACCTTTTGCTTTTAAAAGCAAAAAGTAAAA
*
15222718 AATGTGTTTAGATACAAGAGTAATATTTTTATATAAGTAAAGATTAAATATTAATCTTTGTAATA
131 AATGTGTTTAGATACAAGAGTAATATTTTTATACAAGTAAAGATTAAATATTAATCTTTGTAATA
* * *
15222783 ATATATAAAATGCATGATTCATTTTTGTATAAAACAATTACATTTGAAAATGTATCACATTTCAC
196 ATATACAAAATGCATGATCCATTTTTGTATAAAACAATTACATTTGAAAATGCATCACATTTCAC
15222848 AATTAAATTTGTATCA
261 AATTAAATTTGTATCA
* * **
15222864 CAATAAAAAGCTACTATAATAAGATATAATCTCATGTCTGTGATATAATAATCCATGCATTTTAC
1 CAATAAAAAGCTACTATAATAAGATATAATCTAATGTCTGTGATATAATAAACCACACATTTT--
*
15222929 AAGTCAAGTCCAAGGTGGTTTTGTTTTTACCATTTTATTTACCTTTTGCTTTTAAAAGCAAAAAG
64 -A--CAAGTCCAAGATGGTTTTGTTTTTACCATTTTATTTACCTTTTGCTTTTAAAAGCAAAAAG
*
15222994 TAAAAAATGTGTTTAGATACAAGATTAATATTTTTATACAAGTAAAGATTAAATATTAATCTTTG
126 TAAAAAATGTGTTTAGATACAAGAGTAATATTTTTATACAAGTAAAGATTAAATATTAATCTTTG
* * **
15223059 TAATAATATACAACATGCATGATCCATTTTTGTATAAAACAATTACGTTTGAATGTGCATCACAT
191 TAATAATATACAAAATGCATGATCCATTTTTGTATAAAACAATTACATTTGAAAATGCATCACAT
15223124 TTCACAATT
256 TTCACAATT
15223133 TAATCAAATA
Statistics
Matches: 247, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
276 58 0.23
279 1 0.00
281 188 0.76
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38
Consensus pattern (276 bp):
CAATAAAAAGCTACTATAATAAGATATAATCTAATGTCTGTGATATAATAAACCACACATTTTAC
AAGTCCAAGATGGTTTTGTTTTTACCATTTTATTTACCTTTTGCTTTTAAAAGCAAAAAGTAAAA
AATGTGTTTAGATACAAGAGTAATATTTTTATACAAGTAAAGATTAAATATTAATCTTTGTAATA
ATATACAAAATGCATGATCCATTTTTGTATAAAACAATTACATTTGAAAATGCATCACATTTCAC
AATTAAATTTGTATCA
Found at i:15226901 original size:19 final size:19
Alignment explanation
Indices: 15226877--15226915 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
15226867 ATATTATAAA
15226877 AAAATTTATTATTACATAT
1 AAAATTTATTATTACATAT
* *
15226896 AAAATTTATTGTTATATAT
1 AAAATTTATTATTACATAT
15226915 A
1 A
15226916 TTATATTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
AAAATTTATTATTACATAT
Found at i:15227118 original size:24 final size:25
Alignment explanation
Indices: 15227084--15227139 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
15227074 GTATCATAAA
15227084 AAATAATATAGT-AAAAAATTTATT
1 AAATAATATAGTAAAAAAATTTATT
*
15227108 AGATAATATAGTAAAAAAATTTATT
1 AAATAATATAGTAAAAAAATTTATT
15227133 AAATAAT
1 AAATAAT
15227140 CTTATATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (25 bp):
AAATAATATAGTAAAAAAATTTATT
Found at i:15227552 original size:21 final size:21
Alignment explanation
Indices: 15227513--15227553 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15227503 AAGTTACGTC
*
15227513 ATATAAAAATTTGACAAAATA
1 ATATAAAAATTTAACAAAATA
* *
15227534 ATATATAAATTTAATAAAAT
1 ATATAAAAATTTAACAAAAT
15227554 CAGAAATATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (21 bp):
ATATAAAAATTTAACAAAATA
Found at i:15239557 original size:20 final size:22
Alignment explanation
Indices: 15239505--15239559 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
15239495 AAATTTTAAA
15239505 AAAGTTAAATTACACAAGTTTTAC
1 AAAGTTAAA--ACACAAGTTTTAC
**
15239529 AAACATAAAACA-AAGTTTTAC
1 AAAGTTAAAACACAAGTTTTAC
15239550 -AAGTTAAAAC
1 AAAGTTAAAAC
15239560 TTAAACCGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 8 0.30
21 9 0.33
22 3 0.11
24 7 0.26
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (22 bp):
AAAGTTAAAACACAAGTTTTAC
Found at i:15241821 original size:18 final size:18
Alignment explanation
Indices: 15241798--15241833 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15241788 TAAAGACTTT
15241798 ACCTATTAATAAGCATAC
1 ACCTATTAATAAGCATAC
15241816 ACCTATTAATAAGCATAC
1 ACCTATTAATAAGCATAC
15241834 TCATTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (18 bp):
ACCTATTAATAAGCATAC
Found at i:15242857 original size:51 final size:51
Alignment explanation
Indices: 15242742--15242843 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 51
15242732 TAGGCATACT
* * *
15242742 AACTTGCCTATTAAAAATCTCTTTTCTCTTAAAATTTTTCTTTTACAAGTC
1 AACTTACCTATTAAAAATCTCTTTTCTCTTAAAATTTTTCTTCTACAAGCC
* *
15242793 AACTTACCTATTAAAAATCTTTTTTCTCTTAAAATTCTTT-TTCTATAAGCC
1 AACTTACCTATTAAAAATCTCTTTTCTCTTAAAATT-TTTCTTCTACAAGCC
15242844 TTATTATCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
51 42 0.93
52 3 0.07
ACGTcount: A:0.30, C:0.20, G:0.03, T:0.47
Consensus pattern (51 bp):
AACTTACCTATTAAAAATCTCTTTTCTCTTAAAATTTTTCTTCTACAAGCC
Found at i:15246543 original size:10 final size:10
Alignment explanation
Indices: 15246524--15246558 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
15246514 TTAATTTTGT
15246524 TTATTCTTTA
1 TTATTCTTTA
*
15246534 TTATTATTTA
1 TTATTCTTTA
*
15246544 TTATTCTTTT
1 TTATTCTTTA
15246554 TTATT
1 TTATT
15246559 GAAACAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (10 bp):
TTATTCTTTA
Found at i:15246692 original size:15 final size:15
Alignment explanation
Indices: 15246670--15246704 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
15246660 AACTCTTTCA
*
15246670 ATTTTTTAAATATTAT
1 ATTTTTAAAATATT-T
15246686 ATTTTTAAAATATTT
1 ATTTTTAAAATATTT
15246701 ATTT
1 ATTT
15246705 AAATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTTAAAATATTT
Found at i:15247059 original size:5 final size:6
Alignment explanation
Indices: 15247014--15247058 Score: 58
Period size: 6 Copynumber: 7.7 Consensus size: 6
15247004 AACCAATAAC
*
15247014 AAAAAT -AAAAT -AAAAT AAAAAT AAAATT AGAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAA
15247059 TGAAAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 10 0.29
6 20 0.57
7 5 0.14
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:15247072 original size:19 final size:17
Alignment explanation
Indices: 15247014--15247065 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 17
15247004 AACCAATAAC
15247014 AAAAATAAAAT-AAAAT
1 AAAAATAAAATAAAAAT
15247030 AAAAATAAAATTAGAAAAT
1 AAAAATAAAA-TA-AAAAT
15247049 AAAAATAAAATGAAAAA
1 AAAAATAAAAT-AAAAA
15247066 AGAAAAACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
16 10 0.31
17 1 0.03
18 5 0.16
19 16 0.50
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAAATAAAATAAAAAT
Found at i:15248200 original size:41 final size:41
Alignment explanation
Indices: 15248153--15248437 Score: 170
Period size: 41 Copynumber: 6.9 Consensus size: 41
15248143 TTGAGACTTT
15248153 AAAAACTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
1 AAAAACTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
* *
15248194 AAAAACTC-TTCTAACCAAAAAG-TATGAAACTTTAAAAT-TTAA
1 AAAAACTCATT-TAACC-AGAGGCTATGAAACTTT-AAATGTT-A
* * * * * * *
15248236 GAAAAACCTCCTCTAACCACAGGTTATAAAATTTTAAAT-TCA
1 -AAAAA-CTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
* * * * *
15248278 AAAAGCTCTTTTGACCAGAGACTATAAAACTTTAAATGTTA
1 AAAAACTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
** * * * *
15248319 AAAGTCTTATCTAACTAGAGGCTATGAAACTTTAAAT-TCA
1 AAAAACTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
** * * * *
15248359 AAAGGCTCTTTTGACCAAAGG-TAATAAAACTTTAAATGTTA
1 AAAAACTCATTTAACCAGAGGCT-ATGAAACTTTAAATGTTA
** * * *
15248400 AAAGGCTCCTTTAACC-GATGACTACGAAACTTTAAATG
1 AAAAACTCATTTAACCAGA-GGCTATGAAACTTTAAATG
15248438 GCTTCTCTGA
Statistics
Matches: 189, Mismatches: 42, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.01
40 57 0.30
41 90 0.48
42 10 0.05
43 13 0.07
44 17 0.09
45 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (41 bp):
AAAAACTCATTTAACCAGAGGCTATGAAACTTTAAATGTTA
Found at i:15248429 original size:81 final size:81
Alignment explanation
Indices: 15248268--15248436 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
15248258 GTTATAAAAT
* * *
15248268 TTTAAATTCAAAAAGCTCTTTTGACCAGAGACTATAAAACTTTAAATGTTAAAAGTCTTATCTAA
1 TTTAAATTCAAAAAGCTCTTTTGACCAAAGACTATAAAACTTTAAATGTTAAAAGGCTCATCTAA
* *
15248333 CTAGAGGCTATGAAAC
66 CTAGAGACTACGAAAC
* * * *
15248349 TTTAAATTCAAAAGGCTCTTTTGACCAAAG-GTAATAAAACTTTAAATGTTAAAAGGCTCCTTTA
1 TTTAAATTCAAAAAGCTCTTTTGACCAAAGACT-ATAAAACTTTAAATGTTAAAAGGCTCATCTA
*
15248413 AC-CGATGACTACGAAAC
65 ACTAGA-GACTACGAAAC
15248430 TTTAAAT
1 TTTAAAT
15248437 GGCTTCTCTG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
80 3 0.04
81 73 0.96
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (81 bp):
TTTAAATTCAAAAAGCTCTTTTGACCAAAGACTATAAAACTTTAAATGTTAAAAGGCTCATCTAA
CTAGAGACTACGAAAC
Found at i:15248655 original size:34 final size:34
Alignment explanation
Indices: 15248617--15248745 Score: 107
Period size: 34 Copynumber: 3.6 Consensus size: 34
15248607 TATTCTGATT
*
15248617 AGAGGCAATGAAATTTTAAATGGCTTATCTGACC
1 AGAGGCAATGAAACTTTAAATGGCTTATCTGACC
* * * *
15248651 AGAGGTAATAAAACTTTACATTTAAAAGGCTCT-TCTAACC
1 AGAGGCAAT-GAA----AC-TTTAAATGGCT-TATCTGACC
* * * *
15248691 AAAGGTAATGAAACTTTAAATGGCTCATCTGATC
1 AGAGGCAATGAAACTTTAAATGGCTTATCTGACC
15248725 AGAGGCAATGAAACTTTAAAT
1 AGAGGCAATGAAACTTTAAAT
15248746 TAAAAATCTA
Statistics
Matches: 74, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
34 42 0.57
35 4 0.05
39 3 0.04
40 24 0.32
41 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (34 bp):
AGAGGCAATGAAACTTTAAATGGCTTATCTGACC
Found at i:15248697 original size:40 final size:40
Alignment explanation
Indices: 15248631--15248708 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
15248621 GCAATGAAAT
* * *
15248631 TTTAAATGGCTTATCTGACCAGAGGTAATAAAACTTTACA
1 TTTAAAAGGCTTATCTAACCAAAGGTAATAAAACTTTACA
*
15248671 TTTAAAAGGCTCT-TCTAACCAAAGGTAATGAAACTTTA
1 TTTAAAAGGCT-TATCTAACCAAAGGTAATAAAACTTTA
15248709 AATGGCTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (40 bp):
TTTAAAAGGCTTATCTAACCAAAGGTAATAAAACTTTACA
Found at i:15254851 original size:20 final size:21
Alignment explanation
Indices: 15254822--15254863 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
15254812 GCTTATCTCC
*
15254822 CCTTTCTTTGCTTTTT-TTTT
1 CCTTTATTTGCTTTTTCTTTT
15254842 CCTTTATTTGCTTTTTCTTTT
1 CCTTTATTTGCTTTTTCTTTT
15254863 C
1 C
15254864 ATGCTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.71
Consensus pattern (21 bp):
CCTTTATTTGCTTTTTCTTTT
Found at i:15262346 original size:8 final size:8
Alignment explanation
Indices: 15262335--15262368 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
15262325 TATATATTTT
15262335 TATATAAA
1 TATATAAA
*
15262343 TATATAAT
1 TATATAAA
15262351 TATATAAA
1 TATATAAA
15262359 TATTATAAA
1 TA-TATAAA
15262368 T
1 T
15262369 CATAAGTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (8 bp):
TATATAAA
Found at i:15262346 original size:18 final size:16
Alignment explanation
Indices: 15262334--15262366 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
15262324 TTATATATTT
15262334 TTATATAAATATATAA
1 TTATATAAATATATAA
15262350 TTATATAAATATTATAA
1 TTATATAAATA-TATAA
15262367 ATCATAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATATAAATATATAA
Found at i:15262423 original size:16 final size:17
Alignment explanation
Indices: 15262402--15262433 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15262392 AATTGATAAC
15262402 AAAAATAAAAT-AAAAG
1 AAAAATAAAATGAAAAG
15262418 AAAAATAAAATGAAAA
1 AAAAATAAAATGAAAA
15262434 AAGAAAAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (17 bp):
AAAAATAAAATGAAAAG
Found at i:15263267 original size:16 final size:17
Alignment explanation
Indices: 15263246--15263283 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
15263236 AAATCCCATT
15263246 TTTTTTTACTT-T-TTTA
1 TTTTTTTA-TTATATTTA
15263262 TTTTTTTATTATATTTA
1 TTTTTTTATTATATTTA
15263279 TTTTT
1 TTTTT
15263284 ATGTGGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 9 0.45
17 9 0.45
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTATTATATTTA
Found at i:15268354 original size:29 final size:29
Alignment explanation
Indices: 15268295--15268354 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
15268285 GAATTATAAT
* * *
15268295 AAAATATTTAATATGATATATAAATTTTA
1 AAAATATTTAATATAATATATAAAATATA
* * *
15268324 AAAATCTTTAATGTAATATCTAAAATATA
1 AAAATATTTAATATAATATATAAAATATA
15268353 AA
1 AA
15268355 TATGTTAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (29 bp):
AAAATATTTAATATAATATATAAAATATA
Found at i:15273033 original size:21 final size:21
Alignment explanation
Indices: 15273004--15273044 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15272994 TACGATAATC
*
15273004 GATTATCTCATAAAAACAATT
1 GATTATCTCACAAAAACAATT
* *
15273025 GATTGTCTCGCAAAAACAAT
1 GATTATCTCACAAAAACAAT
15273045 AGACTATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (21 bp):
GATTATCTCACAAAAACAATT
Found at i:15278295 original size:12 final size:13
Alignment explanation
Indices: 15278278--15278306 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15278268 TTTGAATAAC
15278278 TTTAAAT-TTTAT
1 TTTAAATATTTAT
15278290 TTTAAATATTTAT
1 TTTAAATATTTAT
15278303 TTTA
1 TTTA
15278307 TTGATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTAAATATTTAT
Found at i:15278777 original size:23 final size:22
Alignment explanation
Indices: 15278738--15278785 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
15278728 TTGGTTTAAT
15278738 AAAATATATATTAATCAACAAA
1 AAAATATATATTAATCAACAAA
* * *
15278760 AAAATTATTTATTGATCAATAAA
1 AAAA-TATATATTAATCAACAAA
15278783 AAA
1 AAA
15278786 TAAATTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATATATTAATCAACAAA
Done.