Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22724830
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82000 characters in sequence are not A, C, G, or T
File 89 of 109
Found at i:17982291 original size:26 final size:26
Alignment explanation
Indices: 17982262--17982342 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
17982252 CTAAAATATT
17982262 TTTAA-AAATTATAAAAAATTTTAAAA
1 TTTAAGAAA-TATAAAAAATTTTAAAA
* **
17982288 TTTAATAAATATAAAATTTTCTTAAAA
1 TTTAAGAAATATAAAAAATT-TTAAAA
* *
17982315 -TTAAGAAATATTAAAAAACTTAAAAA
1 TTTAAGAAATA-TAAAAAATTTTAAAA
17982341 TT
1 TT
17982343 GAAAACAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 28 0.64
27 16 0.36
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (26 bp):
TTTAAGAAATATAAAAAATTTTAAAA
Found at i:17982485 original size:18 final size:18
Alignment explanation
Indices: 17982396--17982485 Score: 60
Period size: 19 Copynumber: 4.9 Consensus size: 18
17982386 AAAATCCTAA
*
17982396 TTTAAAATATTCTAAAAATT
1 TTTAAAA-ATTC-CAAAATT
17982416 TTTAAAAATTCTC-AAA-T
1 TTTAAAAATTC-CAAAATT
* * **
17982433 TTCAAAATTTTGAAATATT
1 TTTAAAAATTCCAAA-ATT
*
17982452 TTTAAAAATTCTAAAATT
1 TTTAAAAATTCCAAAATT
17982470 TTATAAAAA-TCCAAAA
1 TT-TAAAAATTCCAAAA
17982486 AATTTTCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
17 11 0.20
18 15 0.27
19 23 0.41
20 7 0.12
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (18 bp):
TTTAAAAATTCCAAAATT
Found at i:17982486 original size:19 final size:19
Alignment explanation
Indices: 17982449--17982491 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
17982439 ATTTTGAAAT
* *
17982449 ATTTTTAAAAATTC-TAAA
1 ATTTTTAAAAATCCAAAAA
17982467 ATTTTATAAAAATCCAAAAA
1 ATTTT-TAAAAATCCAAAAA
17982487 ATTTT
1 ATTTT
17982492 CAAACATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 8 0.38
20 8 0.38
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTTTAAAAATCCAAAAA
Found at i:17982857 original size:36 final size:35
Alignment explanation
Indices: 17982789--17982857 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 35
17982779 AAATTTTTTT
* *
17982789 AAAATATTTCAGTTTTTATTTTTTTTATATTTTAA
1 AAAATATTTCAGTTTTTATATTTTTTAGATTTTAA
*
17982824 AAAATATTTCAATTTTTTATAATTTTTT-GATTTT
1 AAAATATTTC-AGTTTTTAT-ATTTTTTAGATTTT
17982858 TTTTATAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 10 0.34
36 13 0.45
37 6 0.21
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (35 bp):
AAAATATTTCAGTTTTTATATTTTTTAGATTTTAA
Found at i:17982882 original size:20 final size:19
Alignment explanation
Indices: 17982834--17982901 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 19
17982824 AAAATATTTC
17982834 AATTTTTTATAATTTTTTG
1 AATTTTTTATAATTTTTTG
*
17982853 ATTTTTTTTATAATTTTTGTG
1 A-ATTTTTTATAATTTTT-TG
* *
17982874 AATTCTTTAGAATTTTTTTGG
1 AATTTTTTATAA-TTTTTT-G
17982895 AATTTTT
1 AATTTTT
17982902 ATTTTAATGC
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 1 0.03
20 24 0.60
21 15 0.38
ACGTcount: A:0.24, C:0.01, G:0.09, T:0.66
Consensus pattern (19 bp):
AATTTTTTATAATTTTTTG
Found at i:17983074 original size:6 final size:6
Alignment explanation
Indices: 17983065--17983182 Score: 51
Period size: 6 Copynumber: 18.5 Consensus size: 6
17983055 TCTATTTTCT
* *
17983065 TTTTTA TTTTTTA TTTTGTA TTTTTACA CTTTTA TTTTATT TTATTTA
1 TTTTTA -TTTTTA TTTT-TA TTTTT--A TTTTTA TTTT-TA TT-TTTA
* * * * * * *
17983113 TTATTA TTATTA TTATTG TTTTTA TATATA TTTTT- CTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
17983160 -TCTTA TGTATTTA TTATTTA TTT
1 TTTTTA T-T-TTTA TT-TTTA TTT
17983183 ATTTATTACT
Statistics
Matches: 86, Mismatches: 16, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
5 8 0.09
6 40 0.47
7 27 0.31
8 11 0.13
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (6 bp):
TTTTTA
Found at i:17983118 original size:3 final size:3
Alignment explanation
Indices: 17983096--17983234 Score: 63
Period size: 3 Copynumber: 44.7 Consensus size: 3
17983086 TTTTACACTT
* *
17983096 TTA TT- TTA TT- TTA TTTA TTA TTA TTA TTA TTA TTG TTT TTA -TA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
17983139 TATA TTT TTC TT- TTA TTT TTA -TC TTA TGTA TTTA TTA TTTA TTTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA -TTA -TTA
* * **
17983184 TTTA TTA CTA CTA TTTA TTA TTA TATA TATA TCC TTA TTA TTA TTA TTA
1 -TTA TTA TTA TTA -TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA
17983233 TT
1 TT
17983235 TTTCTATTAA
Statistics
Matches: 109, Mismatches: 15, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
2 9 0.08
3 69 0.63
4 30 0.28
5 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17983303 original size:22 final size:20
Alignment explanation
Indices: 17983278--17983330 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 20
17983268 TTATATGTTA
*
17983278 TAATTTATCTGTTATTTAATTT
1 TAATTTATCTGTTAATT--TTT
17983300 TAATTTATCTGTTAATTTTT
1 TAATTTATCTGTTAATTTTT
*
17983320 TGATTTATCTG
1 TAATTTATCTG
17983331 ATTTATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 13 0.45
22 16 0.55
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.62
Consensus pattern (20 bp):
TAATTTATCTGTTAATTTTT
Found at i:17983316 original size:12 final size:12
Alignment explanation
Indices: 17983278--17983317 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
17983268 TTATATGTTA
17983278 TAATTTATCTGT
1 TAATTTATCTGT
17983290 T-ATTTAAT-T-T
1 TAATTT-ATCTGT
17983300 TAATTTATCTGT
1 TAATTTATCTGT
17983312 TAATTT
1 TAATTT
17983318 TTTGATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (12 bp):
TAATTTATCTGT
Found at i:17983511 original size:6 final size:6
Alignment explanation
Indices: 17983500--17983566 Score: 54
Period size: 6 Copynumber: 11.5 Consensus size: 6
17983490 GATTGTTTAA
*
17983500 TATTTT TA--TT T-TTTT TATTTT CATTTTT CTATTTT TATTTT TATTATT
1 TATTTT TATTTT TATTTT TATTTT TA-TTTT -TATTTT TATTTT TATT-TT
*
17983548 TA--TT TATTTT TATTAT TAT
1 TATTTT TATTTT TATTTT TAT
17983567 ATTAGGATTG
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
4 7 0.14
5 3 0.06
6 27 0.54
7 12 0.24
8 1 0.02
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:17983526 original size:14 final size:14
Alignment explanation
Indices: 17983509--17983548 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
17983499 ATATTTTTAT
17983509 TTTTTTTATTTTCA
1 TTTTTTTATTTTCA
* *
17983523 TTTTTCTATTTTTA
1 TTTTTTTATTTTCA
17983537 TTTTTATTATTT
1 TTTTT-TTATTT
17983549 ATTTATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTTATTTTCA
Found at i:17983561 original size:29 final size:28
Alignment explanation
Indices: 17983500--17983627 Score: 82
Period size: 29 Copynumber: 4.4 Consensus size: 28
17983490 GATTGTTTAA
* *
17983500 TATTTTTATTTTTTTTATTT-TCATTTTTC
1 TATTTTTATTTTTATTATTTAT--TTTTTT
17983529 TATTTTTATTTTTATTATTTATTTATTTT
1 TATTTTTATTTTTATTATTTATTT-TTTT
*** * * *
17983558 TATTATTATATTAGGATTGTTTAATATTTT
1 TATT-TT-TATTTTTATTATTTATTTTTTT
* *
17983588 TATTTTT-TATTTCATTTTTTATTTTTATT
1 TATTTTTAT-TTTTATTATTTATTTTT-TT
17983617 TA-TTTTATTTT
1 TATTTTTATTTT
17983628 CTTTAAATAA
Statistics
Matches: 78, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
27 1 0.01
28 21 0.27
29 33 0.42
30 11 0.14
31 12 0.15
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (28 bp):
TATTTTTATTTTTATTATTTATTTTTTT
Found at i:17983578 original size:82 final size:78
Alignment explanation
Indices: 17983475--17983626 Score: 252
Period size: 82 Copynumber: 1.9 Consensus size: 78
17983465 AATTAATTAA
17983475 TTATTATTATATTAGGATTGTTTAATATTTTTATTTTTTTTATTTTCATTTTTCTATTTTTATTT
1 TTATTATTATATTAGGATTGTTTAATATTTTTA--TTTTTTA-TTTCATTTTT-TATTTTTATTT
17983540 -TTATTATTTATTTATTT
62 ATT-TTATTTATTTATTT
17983557 TTATTATTATATTAGGATTGTTTAATATTTTTATTTTTTATTTCATTTTTTATTTTTATTTATTT
1 TTATTATTATATTAGGATTGTTTAATATTTTTATTTTTTATTTCATTTTTTATTTTTATTTATTT
17983622 TATTT
66 TATTT
17983627 TCTTTAAATA
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
78 17 0.25
79 12 0.17
80 7 0.10
82 33 0.48
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (78 bp):
TTATTATTATATTAGGATTGTTTAATATTTTTATTTTTTATTTCATTTTTTATTTTTATTTATTT
TATTTATTTATTT
Found at i:17983606 original size:18 final size:17
Alignment explanation
Indices: 17983500--17983627 Score: 83
Period size: 16 Copynumber: 7.7 Consensus size: 17
17983490 GATTGTTTAA
17983500 TATTTTTA-TTTTT-TT
1 TATTTTTATTTTTTATT
*
17983515 TATTTTCATTTTTCTATTTT
1 TATTTTTATTTTT-TA--TT
*
17983535 TATTTTTATTATTTATT
1 TATTTTTATTTTTTATT
*
17983552 TATTTTTA-TTATTA--
1 TATTTTTATTTTTTATT
*** * *
17983566 TATTAGGATTGTTTA-A
1 TATTTTTATTTTTTATT
17983582 TATTTTTATTTTTTATT
1 TATTTTTATTTTTTATT
17983599 TCATTTTT-TATTTTTATT
1 T-ATTTTTAT-TTTTTATT
17983617 TA-TTTTATTTT
1 TATTTTTATTTT
17983628 CTTTAAATAA
Statistics
Matches: 87, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
14 5 0.06
15 11 0.13
16 26 0.30
17 15 0.17
18 15 0.17
19 2 0.02
20 13 0.15
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (17 bp):
TATTTTTATTTTTTATT
Found at i:17983713 original size:60 final size:59
Alignment explanation
Indices: 17983653--17984145 Score: 320
Period size: 62 Copynumber: 8.1 Consensus size: 59
17983643 AAAAACATTT
*
17983653 TTTTC-TTAAAAATAAATGTT-AAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTAAAAATAAATTTTAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
* * **** * *
17983710 TTTTCCTTAAAAATAAATTTTCAAAAAAGATTTTTTTTGAGAAAAAATTGAAAGTATCAA
1 TTTTCTTTAAAAATAAATTTT-AAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
*
17983770 TTTTCTTTAAAAATAAATTTTCAAAAAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTAAAAATAAATTTT---AAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
* * * *
17983832 TTTTCTTTAAGAATAAATTTT---CAAAAAAGGTTTTTCTGATGAAAAGTTGAAAGTATTAA
1 TTTTCTTTAAAAATAAATTTTAAAAAAAAAAGG--TTT-TGAGGAAAAGTTGAAAGTATCAA
* ** * * ** * *
17983891 TTTTCCTCGAAATTAAAAATTCCAAAAAAATA--TTTTTAGGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTAAAAAT-AAATTTTAAAAAAAAAAGGTTTTGA-GGAAAAGTTGAAAGTATCAA
* * ****** * * *
17983950 TTTT-TCTTAAGAATAAACTTTCAAAAAAGGTTTTTTTTTTGAGAAAAAATTAAAAGTATCAA
1 TTTTCT-TTAAAAATAAA-TTTTAAAAAA--AAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
* ** * * *
17984012 TTTTCCTCGAAATTAAAGTTTTCAAAAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTAAAAATAAA-TTTT-AAAAAAAAA-AGGTTTTGAGGAAAAGTTGAAAGTATCAA
* * * * *
17984073 TTTTCCTTAAAAATAAATTTCAAAGAAAAATGTGTTTTTTTTTTAGGAAAAGTTGAAAGTATCAA
1 TTTTCTTTAAAAATAAATTTTAAAAAAAAAAG-G-----TTTTGAGGAAAAGTTGAAAGTATCAA
17984138 TTTTCTTT
1 TTTTCTTT
17984146 GTACAAAAGC
Statistics
Matches: 334, Mismatches: 73, Indels: 50
0.73 0.16 0.11
Matches are distributed among these distances:
56 7 0.02
57 5 0.01
58 22 0.07
59 75 0.22
60 58 0.17
61 38 0.11
62 82 0.25
63 16 0.05
65 31 0.09
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.37
Consensus pattern (59 bp):
TTTTCTTTAAAAATAAATTTTAAAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAA
Found at i:17983743 original size:121 final size:120
Alignment explanation
Indices: 17983636--17984114 Score: 406
Period size: 122 Copynumber: 4.0 Consensus size: 120
17983626 TTCTTTAAAT
* * * * *
17983636 AAAGTTAAAAAACATTTTTTTCTTAAAAATAAATGTT-AAAAAAAAAGGTTTTGAGGAAAAGTTG
1 AAAGTTAAAAATCATTTTTTCCTCAAAAATAAATTTTAAAAAAAAAAGATTTTGAGGAAAAGTTG
17983700 AAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGA--TTTTTTTTGAGAA
66 AAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGATTTTTTTTTTGAGAA
* * * * *
17983753 AAAATTGAAAGTATCA-ATTTTCTTTAAAAATAAATTTTCAAAAAAAAAAAAGATTTTGAGGAAA
1 AAAGTT-AAA-AATCATTTTTTCCTCAAAAATAAATTTT---AAAAAAAAAAGATTTTGAGGAAA
* * * *
17983817 AGTTGAAAGTATCAATTTTCTTTAAGAATAAATTTTCAAAAAAG---GTTTTTCTGATG-A
61 AGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGATTTTTTTTTTGA-GAA
* * * * ** ** * *
17983874 AAAGTTGAAAGT-ATTAATTTTCCTCGAAATTAAAAATT-CCAAAAAAATATTTTTAGGGAAAAG
1 AAAGTTAAAAATCATT--TTTTCCTCAAAAATAAATTTTAAAAAAAAAAGATTTTGA-GGAAAAG
* * * *
17983937 TTGAAAGTATCAATTTTTCTTAAGAATAAACTTTCAAAAAAGGTTTTTTTTTTGAGAA
63 TTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGATTTTTTTTTTGAGAA
* * * * * * *
17983995 AAAATTAAAAGTATCA-ATTTTCCTCGAAATTAAAGTTTTCAAAAAAAAATATTTTTGGGGAAAA
1 AAAGTTAAAA--ATCATTTTTTCCTCAAAAATAAA-TTTTAAAAAAAAAAGA-TTTTGAGGAAAA
*
17984059 GTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAGAAAAATGTGTTTTTTTT
62 GTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA-AAAGAT-T-TTTTTTTT
17984115 TTAGGAAAAG
Statistics
Matches: 292, Mismatches: 46, Indels: 40
0.77 0.12 0.11
Matches are distributed among these distances:
117 18 0.06
118 68 0.23
119 4 0.01
120 3 0.01
121 63 0.22
122 73 0.25
123 49 0.17
124 6 0.02
125 8 0.03
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (120 bp):
AAAGTTAAAAATCATTTTTTCCTCAAAAATAAATTTTAAAAAAAAAAGATTTTGAGGAAAAGTTG
AAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAGATTTTTTTTTTGAGAA
Found at i:17983820 original size:122 final size:122
Alignment explanation
Indices: 17983673--17984142 Score: 553
Period size: 121 Copynumber: 3.8 Consensus size: 122
17983663 AATAAATGTT
*
17983673 AAAAAAAAAGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
* * ** *
17983738 -GATTTTTTTTGAGAAAAAATTGAAAGTATCAATTTTCTTTAAAAATAAATTTTCAAA
66 GGTTTTTTTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCGAAATTAAATTTTC-AA
* *
17983795 AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAGAATAAATTTTCAAAAAA
1 AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
* * * **
17983860 GG--TTTTTCTGATG-AAAAGTTGAAAGTATTAATTTTCCTCGAAATTAAAAATTC--
66 GGTTTTTTTTTGA-GAAAAAATTGAAAGTATCAATTTTCCTCGAAATTAAATTTTCAA
* * * * * *
17983913 -CAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAACTTTCAAAAA
1 AAAAAAAAAGATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
*
17983977 AGGTTTTTTTTTTGAGAAAAAATTAAAAGTATCAATTTTCCTCGAAATTAAAGTTTTCAA
65 AGG-TTTTTTTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCGAAATTAAA-TTTTCAA
* * *
17984037 AAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAGAA
1 AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC--A-AA
* * *
17984100 AAATGTGTTTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTC
63 AAA-G-GTTTTTTTTTGAGAAAAAATTGAAAGTATCAATTTTC
17984143 TTTGTACAAA
Statistics
Matches: 297, Mismatches: 35, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
117 13 0.04
118 47 0.16
120 1 0.00
121 80 0.27
122 70 0.24
123 36 0.12
124 5 0.02
125 11 0.04
126 33 0.11
127 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (122 bp):
AAAAAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
GGTTTTTTTTTGAGAAAAAATTGAAAGTATCAATTTTCCTCGAAATTAAATTTTCAA
Found at i:17988345 original size:19 final size:19
Alignment explanation
Indices: 17988299--17988338 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
17988289 CCTTGCATCG
17988299 AAAGATCAAGTTTAATGTA
1 AAAGATCAAGTTTAATGTA
17988318 AAAGATCAAGTTTAATGTA
1 AAAGATCAAGTTTAATGTA
17988337 AA
1 AA
17988339 GGGTCAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.15, T:0.30
Consensus pattern (19 bp):
AAAGATCAAGTTTAATGTA
Found at i:17992498 original size:8 final size:8
Alignment explanation
Indices: 17992485--17992536 Score: 81
Period size: 8 Copynumber: 6.8 Consensus size: 8
17992475 TGCTTGAAGA
17992485 AAAAAATG
1 AAAAAATG
*
17992493 AAAAAATA
1 AAAAAATG
17992501 AAAAAAT-
1 AAAAAATG
17992508 AAAAAAT-
1 AAAAAATG
17992515 AAAAAATG
1 AAAAAATG
17992523 AAAAAATG
1 AAAAAATG
17992531 AAAAAA
1 AAAAAA
17992537 AAAAAAGTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
7 14 0.33
8 28 0.67
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.12
Consensus pattern (8 bp):
AAAAAATG
Found at i:17992503 original size:6 final size:7
Alignment explanation
Indices: 17992485--17992542 Score: 73
Period size: 8 Copynumber: 7.9 Consensus size: 7
17992475 TGCTTGAAGA
17992485 AAAAAAT
1 AAAAAAT
17992492 GAAAAAAT
1 -AAAAAAT
17992500 AAAAAAAT
1 -AAAAAAT
17992508 AAAAAAT
1 AAAAAAT
17992515 AAAAAAT
1 AAAAAAT
17992522 GAAAAAAT
1 -AAAAAAT
17992530 GAAAAAA-
1 -AAAAAAT
17992537 AAAAAA
1 AAAAAA
17992543 GTGAATGAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
6 6 0.12
7 14 0.29
8 28 0.58
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.10
Consensus pattern (7 bp):
AAAAAAT
Found at i:17992521 original size:30 final size:29
Alignment explanation
Indices: 17992485--17992542 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
17992475 TGCTTGAAGA
17992485 AAAAAATGAAAAAATAAAAAAATAAAAAAT
1 AAAAAATGAAAAAATAAAAAAA-AAAAAAT
*
17992515 AAAAAATGAAAAAATGAAAAAAAAAAAA
1 AAAAAATGAAAAAATAAAAAAAAAAAAA
17992543 GTGAATGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 6 0.22
30 21 0.78
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.10
Consensus pattern (29 bp):
AAAAAATGAAAAAATAAAAAAAAAAAAAT
Found at i:17992542 original size:15 final size:16
Alignment explanation
Indices: 17992484--17992537 Score: 85
Period size: 15 Copynumber: 3.4 Consensus size: 16
17992474 ATGCTTGAAG
17992484 AAAAAAATGAAAAAAT
1 AAAAAAATGAAAAAAT
17992500 AAAAAAAT-AAAAAAT
1 AAAAAAATGAAAAAAT
17992515 -AAAAAATGAAAAAAT
1 AAAAAAATGAAAAAAT
17992530 GAAAAAAA
1 -AAAAAAA
17992538 AAAAAGTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.20
15 14 0.40
16 8 0.23
17 6 0.17
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (16 bp):
AAAAAAATGAAAAAAT
Found at i:17992547 original size:15 final size:14
Alignment explanation
Indices: 17992493--17992547 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 14
17992483 GAAAAAAATG
*
17992493 AAAAAATAAAAAAA
1 AAAAAATGAAAAAA
17992507 TAAAAAAT-AAAAAA
1 -AAAAAATGAAAAAA
17992521 TGAAAAAATGAAAAAA
1 --AAAAAATGAAAAAA
17992537 AAAAAAGTGAA
1 AAAAAA-TGAA
17992548 TGAAAAAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 12 0.33
15 18 0.50
16 6 0.17
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
AAAAAATGAAAAAA
Found at i:17993612 original size:42 final size:42
Alignment explanation
Indices: 17993537--17993664 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
17993527 GATTGTCAAT
* * * *
17993537 GAGCAATTTA-CTTTCCAAAGT-TTCATTGCCTCTGTTTAGAG
1 GAGCAATTTATCTTTTCAAAGTCGTGA-TGCCTCTGATTAGAG
*
17993578 GAGCAATTTA-CTTTTCAAAAGTCGTGGTGCCTCTGATTAGAG
1 GAGCAATTTATCTTTTC-AAAGTCGTGATGCCTCTGATTAGAG
* * * * *
17993620 GAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGCTTAGAG
1 GAGCAATTTATCTTTTCAAAGTCGTGATGCCTCTGATTAGAG
17993662 GAG
1 GAG
17993665 TTTTAATCAA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 15 0.21
42 52 0.71
43 6 0.08
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (42 bp):
GAGCAATTTATCTTTTCAAAGTCGTGATGCCTCTGATTAGAG
Found at i:17993861 original size:9 final size:8
Alignment explanation
Indices: 17993838--17993923 Score: 52
Period size: 9 Copynumber: 10.4 Consensus size: 8
17993828 TTTATTTTCC
17993838 TTTTTA-T
1 TTTTTATT
17993845 TTTTTATT
1 TTTTTATT
17993853 TTTTGTATT
1 TTTT-TATT
**
17993862 TTTACACTT
1 TTTTTA-TT
*
17993871 TTATTT-TA
1 TT-TTTATT
17993879 TTTTTATT
1 TTTTTATT
17993887 TTTATTATT
1 TTT-TTATT
17993896 ATTTTTATAT
1 -TTTTTAT-T
*
17993906 ATTTT-TT
1 TTTTTATT
*
17993913 CTTTTATT
1 TTTTTATT
17993921 TTT
1 TTT
17993924 ATCTTATGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
7 14 0.23
8 18 0.30
9 24 0.39
10 5 0.08
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (8 bp):
TTTTTATT
Found at i:17993896 original size:3 final size:3
Alignment explanation
Indices: 17993871--17994003 Score: 53
Period size: 3 Copynumber: 43.7 Consensus size: 3
17993861 TTTTACACTT
* * * *
17993871 TTA TT- TTA TTT TTA TTT TTA TTA TTA TTT TTA TATA TT- TT- TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
* * *
17993914 TT- TTA TTT TTA -TC TTA TGTA TTTA TTA TTTA TTTA TTTA TTA CTA
1 TTA TTA TTA TTA TTA TTA T-TA -TTA TTA -TTA -TTA -TTA TTA TTA
* * **
17993959 CTA TTTA TTA ATA -TA TATA TCC TTA TTA TTA TTA TTA TTA TTA TT
1 TTA -TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TT
17994004 TATGTTAATA
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
2 11 0.11
3 67 0.66
4 23 0.23
5 1 0.01
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:17993901 original size:18 final size:17
Alignment explanation
Indices: 17993839--17993951 Score: 74
Period size: 19 Copynumber: 6.5 Consensus size: 17
17993829 TTATTTTCCT
17993839 TTTTATTTTT-TATTTT-
1 TTTTATTTTTAT-TTTTA
* *
17993855 TTGTATTTTTACACTTTTA
1 TTTTATTTTT--ATTTTTA
17993874 TTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTA
*
17993891 TTATTATTTTTATATATT-
1 TT-TTATTTTTAT-TTTTA
*
17993909 TTTT-CTTTTATTTTTA
1 TTTTATTTTTATTTTTA
*
17993925 TCTTATGTATTTATTATTTA
1 TTTTAT-T-TTTATT-TTTA
17993945 -TTTATTT
1 TTTTATTT
17993952 ATTACTACTA
Statistics
Matches: 76, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
15 3 0.04
16 18 0.24
17 11 0.14
18 18 0.24
19 22 0.29
20 4 0.05
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTATTTTTATTTTTA
Found at i:17993911 original size:22 final size:22
Alignment explanation
Indices: 17993883--17993925 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17993873 ATTTTATTTT
17993883 TATTTTTAT-TATTATTTTTATA
1 TATTTTT-TCTATTATTTTTATA
*
17993905 TATTTTTTCTTTTATTTTTAT
1 TATTTTTTCTATTATTTTTAT
17993926 CTTATGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (22 bp):
TATTTTTTCTATTATTTTTATA
Found at i:17993918 original size:40 final size:42
Alignment explanation
Indices: 17993869--17993951 Score: 109
Period size: 40 Copynumber: 2.0 Consensus size: 42
17993859 ATTTTTACAC
*
17993869 TTTTATTTTATTTTTATTTTTAT-TA-TTATT-TTTATATATT
1 TTTTATTTTATTTTTA-TCTTATGTATTTATTATTTATATATT
* *
17993909 TTTTCTTTTATTTTTATCTTATGTATTTATTATTTATTTATT
1 TTTTATTTTATTTTTATCTTATGTATTTATTATTTATATATT
17993951 T
1 T
17993952 ATTACTACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.14
40 17 0.46
41 5 0.14
42 10 0.27
ACGTcount: A:0.20, C:0.02, G:0.01, T:0.76
Consensus pattern (42 bp):
TTTTATTTTATTTTTATCTTATGTATTTATTATTTATATATT
Found at i:17993943 original size:34 final size:32
Alignment explanation
Indices: 17993871--17993947 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 32
17993861 TTTTACACTT
17993871 TTATTTTATTTTTATTTTTATTATTATTTTTA
1 TTATTTTATTTTTATTTTTATTATTATTTTTA
* *
17993903 TATATTTTTTCTTTTATTTTTA-TCTTATGTATTTA
1 T-TATTTTAT-TTTTATTTTTATTATTAT-T-TTTA
17993938 TTA-TTTATTT
1 TTATTTTATTT
17993948 ATTTATTACT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
32 3 0.08
33 16 0.42
34 14 0.37
35 5 0.13
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.75
Consensus pattern (32 bp):
TTATTTTATTTTTATTTTTATTATTATTTTTA
Found at i:17993953 original size:34 final size:34
Alignment explanation
Indices: 17993881--17993954 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
17993871 TTATTTTATT
*
17993881 TTTATTTTTATTATTATTTTTATATATTTTTTCT
1 TTTATTTTTATTATTATTTTTATATATTTTTTCA
*
17993915 TTTATTTTTA-TCTTATGTATTTAT-TATTTATTT-A
1 TTTATTTTTATTATTAT-T-TTTATATATTT-TTTCA
17993949 TTTATT
1 TTTATT
17993955 ACTACTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
33 5 0.14
34 22 0.63
35 8 0.23
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (34 bp):
TTTATTTTTATTATTATTTTTATATATTTTTTCA
Found at i:17994433 original size:15 final size:16
Alignment explanation
Indices: 17994408--17994478 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 16
17994398 ATTAGGATTG
*
17994408 TTTAATATTTTTTATT
1 TTTATTATTTTTTATT
**
17994424 TTT-TTA-TTTTCGTT
1 TTTATTATTTTTTATT
*
17994438 TTT-CTA-TTTTTATT
1 TTTATTATTTTTTATT
17994452 TTTATTATTTATTTATT
1 TTTATTATTT-TTTATT
17994469 ATTTATTATT
1 -TTTATTATT
17994479 ATATTAGGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
14 20 0.45
15 4 0.09
16 5 0.11
17 6 0.14
18 9 0.20
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (16 bp):
TTTATTATTTTTTATT
Found at i:17994521 original size:14 final size:13
Alignment explanation
Indices: 17994416--17994521 Score: 61
Period size: 14 Copynumber: 7.3 Consensus size: 13
17994406 TGTTTAATAT
17994416 TTTTTATTTTTTTA
1 TTTTTA-TTTTTTA
**
17994430 TTTTCGTTTTTCTA
1 TTTTTATTTTT-TA
17994444 TTTTTA-TTTTTA
1 TTTTTATTTTTTA
*
17994456 TTATTTATTTATTA
1 TT-TTTATTTTTTA
*
17994470 TTTATTATTATATTAGGA
1 TTT-TTATT-T-TT--TA
17994488 TTGTTTAATATTTTTA
1 TT-TTT-AT-TTTTTA
17994504 TTTTTATTTATTTA
1 TTTTTATTT-TTTA
17994518 TTTT
1 TTTT
17994522 CTTTAAATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 24
0.69 0.08 0.23
Matches are distributed among these distances:
12 4 0.06
13 16 0.22
14 32 0.44
15 4 0.06
16 4 0.06
18 7 0.10
19 4 0.06
20 1 0.01
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:17994620 original size:58 final size:59
Alignment explanation
Indices: 17994547--17994669 Score: 149
Period size: 61 Copynumber: 2.1 Consensus size: 59
17994537 AAAAAAACAT
*
17994547 TTTTCCGTAAAAATAAA-TTAAAAAAAAAAGGGTTTTGAGGAAAAGTTGAAAGTATCAA
1 TTTTCCGTAAAAATAAATTTAAAAAAAAAAGGGTTTTGAGAAAAAGTTGAAAGTATCAA
* * * ****
17994605 TTTTCCTTAAAAATAAATTTTTCAAAAAAGATTTTTTTTGAGAAAAAGTTGAAAGTATCAA
1 TTTTCCGTAAAAATAAA--TTTAAAAAAAAAAGGGTTTTGAGAAAAAGTTGAAAGTATCAA
17994666 TTTT
1 TTTT
17994670 TCTCGAAATN
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 16 0.30
61 38 0.70
ACGTcount: A:0.46, C:0.06, G:0.13, T:0.36
Consensus pattern (59 bp):
TTTTCCGTAAAAATAAATTTAAAAAAAAAAGGGTTTTGAGAAAAAGTTGAAAGTATCAA
Found at i:17996284 original size:14 final size:14
Alignment explanation
Indices: 17996262--17996306 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
17996252 CACATAAAAG
*
17996262 TTTTAATCACACTT
1 TTTTAATCATACTT
*
17996276 TTTTTATCATA-TT
1 TTTTAATCATACTT
*
17996289 TTTTAAACATACTT
1 TTTTAATCATACTT
17996303 TTTT
1 TTTT
17996307 CATCTCAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAATCATACTT
Found at i:17997607 original size:18 final size:18
Alignment explanation
Indices: 17997581--17997625 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
17997571 TAATTTTCTT
17997581 TTAAATTTGAGAAATGCG
1 TTAAATTTGAGAAATGCG
*
17997599 TTAAGTTTGAGAAATGCG
1 TTAAATTTGAGAAATGCG
17997617 TTATAATTT
1 TTA-AATTT
17997626 TAAATTAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (18 bp):
TTAAATTTGAGAAATGCG
Found at i:17997976 original size:28 final size:29
Alignment explanation
Indices: 17997945--17998001 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
17997935 ACATATATAA
17997945 AAATAATCATAGAT-AAAAATCATTTAGC
1 AAATAATCATAGATAAAAAATCATTTAGC
* * *
17997973 AAATATTTATATATAAAAAAATCATTTAG
1 AAATAATCATAGAT-AAAAAATCATTTAG
17998002 ATGAATAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.46
30 13 0.54
ACGTcount: A:0.54, C:0.07, G:0.05, T:0.33
Consensus pattern (29 bp):
AAATAATCATAGATAAAAAATCATTTAGC
Found at i:17998012 original size:46 final size:44
Alignment explanation
Indices: 17997937--17998023 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 44
17997927 GAATAATCAC
17997937 ATATATAAAAATAATCATAGATAAAAATCATTTAGCAAATATTT
1 ATATATAAAAATAATCATAGATAAAAATCATTTAGCAAATATTT
*
17997981 ATATATAAAAA-AATCATTTAGATGAATAATCATTTAGCAAATA
1 ATATATAAAAATAATCA--TAGAT-AAAAATCATTTAGCAAATA
17998024 CCTTAAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 5 0.13
44 11 0.28
45 5 0.13
46 18 0.46
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (44 bp):
ATATATAAAAATAATCATAGATAAAAATCATTTAGCAAATATTT
Found at i:18001730 original size:52 final size:52
Alignment explanation
Indices: 18001652--18001763 Score: 143
Period size: 52 Copynumber: 2.2 Consensus size: 52
18001642 GTCATTATAA
* ** *
18001652 GATTGATTGATTCTTGAATTTTATTCAATTTTTTTACCATTGCAAACTAGAG
1 GATTGATTGATTCTTGAATTTCATTCAAAATTTTGACCATTGCAAACTAGAG
* * ** *
18001704 GATTGATTGGTTCTTGAATTTCATTCAAAATTTTGACCATTTCAGGCTAGTG
1 GATTGATTGATTCTTGAATTTCATTCAAAATTTTGACCATTGCAAACTAGAG
18001756 GATTGATT
1 GATTGATT
18001764 TATTTTCATA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.45
Consensus pattern (52 bp):
GATTGATTGATTCTTGAATTTCATTCAAAATTTTGACCATTGCAAACTAGAG
Found at i:18001805 original size:21 final size:21
Alignment explanation
Indices: 18001764--18001852 Score: 76
Period size: 20 Copynumber: 4.4 Consensus size: 21
18001754 TGGATTGATT
* **
18001764 TATTTTCATAA-GAATTGATC
1 TATTTTCAGAATGAATCAATC
18001784 TATTTTCAGAATGAATCAATC
1 TATTTTCAGAATGAATCAATC
* * * *
18001805 TATTTGCATAAGGGATCAATC
1 TATTTTCAGAATGAATCAATC
* *
18001826 T-TTTTCAGAATGGATCAAGC
1 TATTTTCAGAATGAATCAATC
18001846 -ATTTTCA
1 TATTTTCA
18001853 TAAGGTATTG
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (21 bp):
TATTTTCAGAATGAATCAATC
Found at i:18001815 original size:41 final size:40
Alignment explanation
Indices: 18001764--18001856 Score: 107
Period size: 41 Copynumber: 2.3 Consensus size: 40
18001754 TGGATTGATT
** *
18001764 TATTTTCATAAGAATTGATCTATTTTCAGAATGAATCAATC
1 TATTTTCATAAGAATCAATCT-TTTTCAGAATGAATCAAGC
* * *
18001805 TATTTGCATAAGGGATCAATCTTTTTCAGAATGGATCAAGC
1 TATTTTCATAA-GAATCAATCTTTTTCAGAATGAATCAAGC
18001846 -ATTTTCATAAG
1 TATTTTCATAAG
18001857 GTATTGATTG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.02
40 9 0.20
41 27 0.61
42 7 0.16
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (40 bp):
TATTTTCATAAGAATCAATCTTTTTCAGAATGAATCAAGC
Found at i:18001842 original size:20 final size:21
Alignment explanation
Indices: 18001781--18001852 Score: 85
Period size: 20 Copynumber: 3.5 Consensus size: 21
18001771 ATAAGAATTG
*
18001781 ATCTATTTTCAGAATGAATCA
1 ATCTATTTTCAGAATGGATCA
* * *
18001802 ATCTATTTGCATAAGGGATCA
1 ATCTATTTTCAGAATGGATCA
18001823 ATCT-TTTTCAGAATGGATCA
1 ATCTATTTTCAGAATGGATCA
*
18001843 AGC-ATTTTCA
1 ATCTATTTTCA
18001853 TAAGGTATTG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 21 0.50
21 21 0.50
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (21 bp):
ATCTATTTTCAGAATGGATCA
Found at i:18002777 original size:23 final size:23
Alignment explanation
Indices: 18002751--18002827 Score: 79
Period size: 23 Copynumber: 3.4 Consensus size: 23
18002741 TATTATTTTT
**
18002751 TTTATTTTTTAT-TTTTAAATATA
1 TTTATTTTTTATCTACT-AATATA
*
18002774 TTTATTATTTATCTACTAATATA
1 TTTATTTTTTATCTACTAATATA
* *
18002797 TTTA-TTTTTATCTATTAACATA
1 TTTATTTTTTATCTACTAATATA
18002819 -TTATTTTTT
1 TTTATTTTTT
18002828 TGGTATCATT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 3 0.07
22 20 0.43
23 21 0.46
24 2 0.04
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTATTTTTTATCTACTAATATA
Found at i:18002809 original size:22 final size:22
Alignment explanation
Indices: 18002768--18002826 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
18002758 TTTATTTTTA
18002768 AATATATTTATTATTTATCTACT
1 AATATATTTATT-TTTATCTACT
*
18002791 AATATATTTATTTTTATCTATT
1 AATATATTTATTTTTATCTACT
*
18002813 AACATA-TTATTTTT
1 AATATATTTATTTTT
18002827 TTGGTATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 8 0.24
22 14 0.41
23 12 0.35
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (22 bp):
AATATATTTATTTTTATCTACT
Found at i:18002827 original size:22 final size:22
Alignment explanation
Indices: 18002752--18002827 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
18002742 ATTATTTTTT
*
18002752 TTATTTTTTAT-TTTTAAATATA
1 TTATTTTTTATCTATT-AATATA
* *
18002774 TTTATTATTTATCTACTAATATA
1 -TTATTTTTTATCTATTAATATA
*
18002797 TT-TATTTTTATCTATTAACATA
1 TTAT-TTTTTATCTATTAATATA
18002819 TTATTTTTT
1 TTATTTTTT
18002828 TGGTATCATT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
21 1 0.02
22 24 0.55
23 17 0.39
24 2 0.05
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATTTTTTATCTATTAATATA
Found at i:18003705 original size:7 final size:6
Alignment explanation
Indices: 18003695--18003749 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
18003685 AATTATTTAG
* *
18003695 TATTTCT TA-TTT TATTTT T-TATTT TATCTT TATTTT TATTTT ATTTTTT
1 TATTT-T TATTTT TATTTT TAT-TTT TATTTT TATTTT TATTTT -TATTTT
18003744 TATTTT
1 TATTTT
18003750 CTTTAAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.10
6 28 0.70
7 8 0.20
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:18003716 original size:12 final size:12
Alignment explanation
Indices: 18003695--18003749 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
18003685 AATTATTTAG
*
18003695 TATTTCTTATTT
1 TATTTTTTATTT
18003707 TATTTTTTATTT
1 TATTTTTTATTT
*
18003719 TA-TCTTTATTTT
1 TATTTTTTA-TTT
*
18003731 TATTTTATTTTTT
1 TATTTT-TTATTT
18003744 TATTTT
1 TATTTT
18003750 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 5 0.14
12 18 0.50
13 11 0.31
14 2 0.06
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:18003730 original size:17 final size:17
Alignment explanation
Indices: 18003701--18003741 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
18003691 TTAGTATTTC
18003701 TTATTTTATTTTTTATT
1 TTATTTTATTTTTTATT
18003718 TTATCTTTA-TTTTTATT
1 TTAT-TTTATTTTTTATT
18003735 TTATTTT
1 TTATTTT
18003742 TTTATTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 16 0.70
18 4 0.17
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (17 bp):
TTATTTTATTTTTTATT
Found at i:18003830 original size:58 final size:58
Alignment explanation
Indices: 18003767--18004042 Score: 446
Period size: 58 Copynumber: 4.8 Consensus size: 58
18003757 TAAAATTCCA
* * *
18003767 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTGTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
18003825 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAGTAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
* *
18003883 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAGTAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
*
18003941 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATAAGTTTTCA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAGTTTTCT
* *
18003999 AAAAAATATTTTCGAGGAAAAATTGAAAGTATCAATTTTTCTTG
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
18004043 TACAAAAGCA
Statistics
Matches: 206, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
57 4 0.02
58 197 0.96
59 5 0.02
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
Found at i:18007294 original size:22 final size:20
Alignment explanation
Indices: 18007243--18007296 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
18007233 AATTGATTTA
*
18007243 AATTAATTCAATATTCGATT
1 AATTAATTAAATATTCGATT
*
18007263 GATTCAAATTAAATAGATTCGATT
1 AATT--AATTAAAT--ATTCGATT
18007287 AATTAATTAA
1 AATTAATTAA
18007297 GTTAAAATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
20 3 0.11
22 13 0.48
24 11 0.41
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (20 bp):
AATTAATTAAATATTCGATT
Found at i:18007471 original size:29 final size:30
Alignment explanation
Indices: 18007439--18007501 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
18007429 TTAAGTATAT
* *
18007439 TTAAGCATTTGATATTTTATTAT-AATTAA
1 TTAAGCATTTAATATATTATTATGAATTAA
** *
18007468 TTAAGTTTTTAATCTATTATTATGAATTAA
1 TTAAGCATTTAATATATTATTATGAATTAA
18007498 TTAA
1 TTAA
18007502 ATTTTTAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.52
Consensus pattern (30 bp):
TTAAGCATTTAATATATTATTATGAATTAA
Found at i:18007514 original size:29 final size:29
Alignment explanation
Indices: 18007450--18007514 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 29
18007440 TAAGCATTTG
* *
18007450 ATATTTTATTATAATTAATTAAGTTTTTA
1 ATATATTATTATAATTAATTAAATTTTTA
*
18007479 ATCTATTATTATGAATTAATTAAATTTTTA
1 ATATATTATTAT-AATTAATTAAATTTTTA
18007509 A-ATATT
1 ATATATT
18007515 TATTTTTACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (29 bp):
ATATATTATTATAATTAATTAAATTTTTA
Found at i:18014883 original size:21 final size:22
Alignment explanation
Indices: 18014839--18014887 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
18014829 CTGATTCATG
*
18014839 TAAAAAATTTTTTTTATTGAATT
1 TAAAAATTTTTTTTTATT-AATT
* *
18014862 TAAAAATTTTTTTTTGTTATTT
1 TAAAAATTTTTTTTTATTAATT
18014884 TAAA
1 TAAA
18014888 TTTTATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (22 bp):
TAAAAATTTTTTTTTATTAATT
Found at i:18015451 original size:13 final size:13
Alignment explanation
Indices: 18015433--18015469 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
18015423 AAAAAATCCA
*
18015433 AAATAATAATAAT
1 AAATAATAAAAAT
18015446 AAATAATAAAAAT
1 AAATAATAAAAAT
*
18015459 CAATAATAAAA
1 AAATAATAAAA
18015470 TGTGTGCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAATAAAAAT
Found at i:18016959 original size:7 final size:7
Alignment explanation
Indices: 18016947--18017002 Score: 60
Period size: 7 Copynumber: 7.7 Consensus size: 7
18016937 ATTTTTTTAA
18016947 AAAAATC
1 AAAAATC
18016954 AAAAATC
1 AAAAATC
*
18016961 AAAAATAAA
1 AAAAAT--C
18016970 AAAAATC
1 AAAAATC
*
18016977 AAAAATAA
1 AAAAAT-C
18016985 AAAAATC
1 AAAAATC
18016992 AAAAAT-
1 AAAAATC
18016998 AAAAA
1 AAAAA
18017003 AAATAATTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
6 5 0.12
7 25 0.60
8 6 0.14
9 6 0.14
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATC
Found at i:18016972 original size:15 final size:15
Alignment explanation
Indices: 18016954--18017004 Score: 93
Period size: 15 Copynumber: 3.3 Consensus size: 15
18016944 TAAAAAAATC
18016954 AAAAATCAAAAATAAA
1 AAAAATCAAAAAT-AA
18016970 AAAAATCAAAAATAA
1 AAAAATCAAAAATAA
18016985 AAAAATCAAAAATAA
1 AAAAATCAAAAATAA
18017000 AAAAA
1 AAAAA
18017005 ATAATTCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 22 0.63
16 13 0.37
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAATCAAAAATAA
Found at i:18016973 original size:16 final size:16
Alignment explanation
Indices: 18016954--18017006 Score: 99
Period size: 16 Copynumber: 3.4 Consensus size: 16
18016944 TAAAAAAATC
18016954 AAAAATCAAAAATAAA
1 AAAAATCAAAAATAAA
18016970 AAAAATCAAAAAT-AA
1 AAAAATCAAAAATAAA
18016985 AAAAATCAAAAATAAA
1 AAAAATCAAAAATAAA
18017001 AAAAAT
1 AAAAAT
18017007 AATTCTGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
15 15 0.42
16 21 0.58
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAATCAAAAATAAA
Found at i:18016975 original size:23 final size:23
Alignment explanation
Indices: 18016945--18016988 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
18016935 CCATTTTTTT
*
18016945 AAAAAAATCAAAAATCAAAAATA
1 AAAAAAATCAAAAATAAAAAATA
18016968 AAAAAAATCAAAAATAAAAAA
1 AAAAAAATCAAAAATAAAAAA
18016989 ATCAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.82, C:0.07, G:0.00, T:0.11
Consensus pattern (23 bp):
AAAAAAATCAAAAATAAAAAATA
Found at i:18020682 original size:18 final size:18
Alignment explanation
Indices: 18020655--18020698 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
18020645 TGAAATCATC
18020655 AAAAAA-AAGAAAAAAAG-
1 AAAAAATAAG-AAAAAAGT
*
18020672 AAAAAATAAGAGAAAAGT
1 AAAAAATAAGAAAAAAGT
18020690 AAAAAATAA
1 AAAAAATAA
18020699 AAGCTCTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (18 bp):
AAAAAATAAGAAAAAAGT
Found at i:18021630 original size:30 final size:31
Alignment explanation
Indices: 18021587--18021657 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 31
18021577 AGGATATTTG
18021587 CATTT-CATGTG-CATCATTTTAAGAAAAGA
1 CATTTGCATGTGACATCATTTTAAGAAAAGA
* * *
18021616 GATTTGCATTTGCATCATCATTTTAAGAGAAGA
1 CATTTGCATGTG-A-CATCATTTTAAGAAAAGA
18021649 CATTTGCAT
1 CATTTGCAT
18021658 CATAATGGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 4 0.12
30 5 0.15
33 25 0.74
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (31 bp):
CATTTGCATGTGACATCATTTTAAGAAAAGA
Found at i:18022068 original size:42 final size:42
Alignment explanation
Indices: 18022013--18022317 Score: 223
Period size: 42 Copynumber: 7.0 Consensus size: 42
18022003 ATTCATTTAC
* * * *
18022013 ATTTTCTCGGTGGTGATATCCGAGTGTCAAGATCTGAATTAT
1 ATTTTTTCGGTGGTGATATCCGAATGTCAAGATTTGAATTGT
* * * * *
18022055 ATTTTTTCAGTGGTGATAACCAAATGTCAAGGTTTGAATTGC
1 ATTTTTTCGGTGGTGATATCCGAATGTCAAGATTTGAATTGT
* *
18022097 ATTTTTTCCCGATGGTGATATCTGAATGTCAAGATTTGAATTGT
1 ATTTTTT--CGGTGGTGATATCCGAATGTCAAGATTTGAATTGT
* **
18022141 ATTTTTTCGGTGGTGATATCTGAATGTCAAGGTTACCAAGGTTTGAATTAC
1 ATTTTTTCGGTGGTGATATCCGAATGTCAA-G------A--TTTGAATTGT
* ** * *
18022192 ATTTTTTCCTAGTGGTGATATATGAATGTCAAGGTTTGAATTGC
1 ATTTTTT-C-GGTGGTGATATCCGAATGTCAAGATTTGAATTGT
* * * * * *
18022236 ATTTTCTCGGTGGTGATATCCGAGTATCGAGGTTTGAATTTT
1 ATTTTTTCGGTGGTGATATCCGAATGTCAAGATTTGAATTGT
* ** * *
18022278 ATTTTCTCAATGGTGATATCTGAATGTCAAGGTTTGAATT
1 ATTTTTTCGGTGGTGATATCCGAATGTCAAGATTTGAATT
18022318 CATTTCCTCG
Statistics
Matches: 212, Mismatches: 38, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
42 122 0.58
43 2 0.01
44 50 0.24
49 1 0.00
51 15 0.07
52 2 0.01
53 20 0.09
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.41
Consensus pattern (42 bp):
ATTTTTTCGGTGGTGATATCCGAATGTCAAGATTTGAATTGT
Found at i:18022127 original size:86 final size:86
Alignment explanation
Indices: 18022014--18022174 Score: 232
Period size: 86 Copynumber: 1.9 Consensus size: 86
18022004 TTCATTTACA
* * *
18022014 TTTTCTCGGTGGTGATATCCGAGTGTCAAGATCTGAATTATATTTTTTCAGTGGTGATAACCAAA
1 TTTTCCCGATGGTGATATCCGAATGTCAAGATCTGAATTATATTTTTTCAGTGGTGATAACCAAA
18022079 TGTCAAGGTTTGAATTGCATT
66 TGTCAAGGTTTGAATTGCATT
* * * * * **
18022100 TTTTCCCGATGGTGATATCTGAATGTCAAGATTTGAATTGTATTTTTTCGGTGGTGATATCTGAA
1 TTTTCCCGATGGTGATATCCGAATGTCAAGATCTGAATTATATTTTTTCAGTGGTGATAACCAAA
18022165 TGTCAAGGTT
66 TGTCAAGGTT
18022175 ACCAAGGTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (86 bp):
TTTTCCCGATGGTGATATCCGAATGTCAAGATCTGAATTATATTTTTTCAGTGGTGATAACCAAA
TGTCAAGGTTTGAATTGCATT
Found at i:18022246 original size:95 final size:95
Alignment explanation
Indices: 18022082--18022255 Score: 278
Period size: 95 Copynumber: 1.8 Consensus size: 95
18022072 AACCAAATGT
* * * * *
18022082 CAAGGTTTGAATTGCATTTTTTCCCGATGGTGATATCTGAATGTCAAGATTTGAATTGTATTTTT
1 CAAGGTTTGAATTACATTTTTTCCAGATGGTGATATATGAATGTCAAGATTTGAATTGCATTTTC
18022147 TCGGTGGTGATATCTGAATGTCAAGGTTAC
66 TCGGTGGTGATATCTGAATGTCAAGGTTAC
*
18022177 CAAGGTTTGAATTACATTTTTTCCTAG-TGGTGATATATGAATGTCAAGGTTTGAATTGCATTTT
1 CAAGGTTTGAATTACATTTTTTCC-AGATGGTGATATATGAATGTCAAGATTTGAATTGCATTTT
18022241 CTCGGTGGTGATATC
65 CTCGGTGGTGATATC
18022256 CGAGTATCGA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
95 71 0.99
96 1 0.01
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.41
Consensus pattern (95 bp):
CAAGGTTTGAATTACATTTTTTCCAGATGGTGATATATGAATGTCAAGATTTGAATTGCATTTTC
TCGGTGGTGATATCTGAATGTCAAGGTTAC
Found at i:18022293 original size:137 final size:136
Alignment explanation
Indices: 18022047--18022311 Score: 354
Period size: 137 Copynumber: 1.9 Consensus size: 136
18022037 TGTCAAGATC
*
18022047 TGAATTATATTTTTTCAGTGGTGATAACCAAATGTCAAGGTTTGAATTGCATTTTTTCCCGATGG
1 TGAATTACATTTTTTCAGTGGTGATAACCAAATGTCAAGGTTTGAATTGCA-TTTTTCCCGATGG
* * * **
18022112 TGATATCTGAATGTCAAGATTTGAATTGTATTTTTTCGGTGGTGATATCTGAATGTCAAGGTTAC
65 TGATATCCGAATATCAAGATTTGAATTGTATTTTCTCAATGGTGATATCTGAATGTCAAGGTTAC
18022177 CAAGGTT
130 CAAGGTT
** * *
18022184 TGAATTACATTTTTTCCTAGTGGTGATATA-TGAATGTCAAGGTTTGAATTGCA-TTTTCTCGGT
1 TGAATTACATTTTTT-C-AGTGGTGATA-ACCAAATGTCAAGGTTTGAATTGCATTTTTCCCGAT
* * * *
18022247 GGTGATATCCGAGTATCGAGGTTTGAATTTTATTTTCTCAATGGTGATATCTGAATGTCAAGGTT
63 GGTGATATCCGAATATCAAGATTTGAATTGTATTTTCTCAATGGTGATATCTGAATGTCAAGGTT
18022312 TGAATTCATT
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
137 78 0.70
138 1 0.01
139 31 0.28
140 1 0.01
ACGTcount: A:0.25, C:0.11, G:0.22, T:0.42
Consensus pattern (136 bp):
TGAATTACATTTTTTCAGTGGTGATAACCAAATGTCAAGGTTTGAATTGCATTTTTCCCGATGGT
GATATCCGAATATCAAGATTTGAATTGTATTTTCTCAATGGTGATATCTGAATGTCAAGGTTACC
AAGGTT
Found at i:18022375 original size:82 final size:84
Alignment explanation
Indices: 18022204--18022378 Score: 221
Period size: 82 Copynumber: 2.1 Consensus size: 84
18022194 TTTTTCCTAG
* * * * *
18022204 TGGTGATATATGAATGTCAAGGTTTGAATTGCATTTTCTCGGTGGTGATATCCGAGTATCGAGGT
1 TGGTGATATATGAATGTCAAGGTTTGAATTGCATTTCCTCGGAGGTGATATCCGAGTATCAAAGA
*
18022269 TTGAATTTTATTTTCTCAA
66 GTGAATTTTATTTTCTCAA
* *
18022288 TGGTGATATCTGAATGTCAAGGTTTGAATT-CATTTCCTC-GAGGTGATATCCGAGTATTAAAGA
1 TGGTGATATATGAATGTCAAGGTTTGAATTGCATTTCCTCGGAGGTGATATCCGAGTATCAAAGA
* **
18022351 GTG-ATTTATATTTTTTTGA
66 GTGAATTT-TATTTTCTCAA
18022370 TGGTGATAT
1 TGGTGATAT
18022379 TTGAGTTTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 4 0.05
82 38 0.48
83 8 0.10
84 29 0.37
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (84 bp):
TGGTGATATATGAATGTCAAGGTTTGAATTGCATTTCCTCGGAGGTGATATCCGAGTATCAAAGA
GTGAATTTTATTTTCTCAA
Found at i:18022460 original size:42 final size:42
Alignment explanation
Indices: 18022413--18022584 Score: 157
Period size: 42 Copynumber: 4.3 Consensus size: 42
18022403 ATGAAGTCAT
*
18022413 TTGCATATTCTCGGTAGTGATATCCGAGTGTTAATG-TTTGAA
1 TTGCATATTCTCGGTAGTGATATCCGAGTGTCAA-GATTTGAA
* * *
18022455 TTGCATTTTCTCGATGGTGATATCCGAGTGTCAAGATTTGAA
1 TTGCATATTCTCGGTAGTGATATCCGAGTGTCAAGATTTGAA
* * * * * *
18022497 TTACATATTCTCGGTGGCGATATTCGA-AG-C--CA--T---
1 TTGCATATTCTCGGTAGTGATATCCGAGTGTCAAGATTTGAA
* *
18022530 TTGCATATTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAA
1 TTGCATATTCTCGGTAGTGATATCCGAGTGTCAAGATTTGAA
18022572 TTGCATATTCTCG
1 TTGCATATTCTCG
18022585 ATGGCGATAT
Statistics
Matches: 102, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
33 23 0.23
34 1 0.01
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
41 2 0.02
42 70 0.69
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.38
Consensus pattern (42 bp):
TTGCATATTCTCGGTAGTGATATCCGAGTGTCAAGATTTGAA
Found at i:18022541 original size:75 final size:75
Alignment explanation
Indices: 18022455--18022861 Score: 451
Period size: 75 Copynumber: 5.4 Consensus size: 75
18022445 AATGTTTGAA
*
18022455 TTGCATTTTCTC-GATGGTGATATCCGAGTGTCAAGATTTGAATTACATATTCTCGGTGGCGATA
1 TTGCATTTTCTCAG-TGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATA
*
18022519 TTCGAAGCCAT
65 TTCGAAGTCAT
* *
18022530 TTGCATATTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGATGGCGATA-
1 TTGCATTTTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATAT
*
18022594 TCTAAAGTCAT
66 TC-GAAGTCAT
* * * * * * *
18022605 TTGCCTTTTCTCACTGGTGATATCCGAGTGTCAAGGTTTGAATCGCATTTTCTCGATGACGATAT
1 TTGCATTTTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATAT
*
18022670 TCGAATTCAT
66 TCGAAGTCAT
* * * * * *
18022680 TTACATTTTCTC-GATGGTGATATCTGAGTGTCAAGGTTTGAATCGCATATTCTTGGTGGTGATA
1 TTGCATTTTCTCAG-TGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATA
*
18022744 TCCGAAGTCAAT
65 TTCGAAGTC-AT
* * ** ** * * * * *
18022756 TTACCTTTTCTTGGTGGTGATATCTAAGTGTCAAGGTTTGAATTGCATTTTTTCAGTGGTGATAT
1 TTGCATTTTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATAT
*
18022821 CCGAAGTCAT
66 TCGAAGTCAT
* *
18022831 TTGCATATTCTCAGTGGTGATATCAGAGTGT
1 TTGCATTTTCTCAGTGGTGATATCCGAGTGT
18022862 TAAAGCTTGA
Statistics
Matches: 286, Mismatches: 40, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
74 2 0.01
75 215 0.75
76 68 0.24
77 1 0.00
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.38
Consensus pattern (75 bp):
TTGCATTTTCTCAGTGGTGATATCCGAGTGTCAAGATTTGAATTGCATATTCTCGGTGGCGATAT
TCGAAGTCAT
Found at i:18022669 original size:42 final size:42
Alignment explanation
Indices: 18022623--18022732 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 42
18022613 TCTCACTGGT
18022623 GATATCCGAGTGTCAAGGTTTGAATCGCATTTTCTCGATGAC
1 GATATCCGAGTGTCAAGGTTTGAATCGCATTTTCTCGATGAC
* * **
18022665 GATATTCGAAT-TC-A--TTT--A---CATTTTCTCGATGGT
1 GATATCCGAGTGTCAAGGTTTGAATCGCATTTTCTCGATGAC
* *
18022698 GATATCTGAGTGTCAAGGTTTGAATCGCATATTCT
1 GATATCCGAGTGTCAAGGTTTGAATCGCATTTTCT
18022733 TGGTGGTGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 18
0.66 0.10 0.23
Matches are distributed among these distances:
33 21 0.41
34 2 0.04
35 1 0.02
36 1 0.02
37 3 0.06
38 3 0.06
39 1 0.02
40 1 0.02
41 2 0.04
42 16 0.31
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (42 bp):
GATATCCGAGTGTCAAGGTTTGAATCGCATTTTCTCGATGAC
Found at i:18023158 original size:49 final size:49
Alignment explanation
Indices: 18023078--18023684 Score: 307
Period size: 48 Copynumber: 12.8 Consensus size: 49
18023068 GTTTCAAGAA
*
18023078 AAAATTTTAAAGTTATTGAGCCCCTGCTTAGAGGAGCTTTCCCAAGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * *
18023127 ATGAATTTTAAACTT-TTGAGCCTCTGGTTAGAAGAGCTTTTCCAAGATG
1 A-AAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * ***
18023176 AAAATTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTTAAGAT-
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * * **
18023224 -AAATTTATAAAGTTGTTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATG
1 AAAATTT-TAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * ** * *
18023273 -GATTTTTAAAGTTATTGAGCCTCTACTGAGAAAAGTTTTTCCAAGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * ***
18023321 --AATTTTAAAGTTGTGTGAGCCTCTG-TTGAAATGAACTTTTTTAAGATG
1 AAAATTTTAAAGTTAT-TGAGCCTCTGCTT-AGAGGAGCTTTCCCAAGATG
* * *
18023369 -AAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTTTTCTAAGAT-
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* *
18023416 -AAATTTTAAAGTTGTTGAGCCTCT--TT--------TTT-TCAAGAT-
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * **
18023452 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * * * * ***
18023501 -GATTTTTAAAATTATTAAGCCTTTGCTTATAGGAGTTTTTTTAACGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAA-GATG
* * * * * **
18023550 -AATTTTTAAAGTTATTGAGCCTTTACTTAGAAGAGTTTTTTCAAGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
* * * * *
18023598 -AATTTTTAAAGTTGTTGAGCTTCTGCTTAGATGAGCCTTT-TCAAGATG
1 AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAG-CTTTCCCAAGATG
* * * * *
18023646 --AATTTTAAAAGTTGTTAAGCCTTTGATTGGAGGAGCTTT
1 AAAATTTT-AAAGTTATTGAGCCTCTGCTTAGAGGAGCTTT
18023685 TTAAATTAAA
Statistics
Matches: 454, Mismatches: 80, Indels: 50
0.78 0.14 0.09
Matches are distributed among these distances:
36 5 0.01
37 26 0.06
39 1 0.00
45 1 0.00
47 54 0.12
48 235 0.52
49 121 0.27
50 11 0.02
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (49 bp):
AAAATTTTAAAGTTATTGAGCCTCTGCTTAGAGGAGCTTTCCCAAGATG
Found at i:18023302 original size:96 final size:95
Alignment explanation
Indices: 18023082--18023686 Score: 459
Period size: 96 Copynumber: 6.4 Consensus size: 95
18023072 CAAGAAAAAA
* * * *** *
18023082 TTTTAAAGTTATTGAGCCCCTGCTTAGAGGAGCTTTCCCAAGATGATGAATTTTAAACTT-TTGA
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTT-TTTA-A-GATGAATTTTAAAGTTGTTGA
* * * * * *
18023146 GCCTCTGGTTAGAAGAGCTTTTCCAAGATGAAAA
63 GCCTTTGCTGAGAGGAGCTTTTTCAAGATG-AAT
* * * * *
18023180 TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTTAAGATAAATTTATAAAGTTGTTAAGC
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTTTAAGATGAATTT-TAAAGTTGTTGAGC
* *
18023245 CTTTACTGAGAGGAGCTTTTTCAAGATGGAT
65 CTTTGCTGAGAGGAGCTTTTTCAAGATGAAT
** *
18023276 TTTTAAAGTTATTGAGCCTCTACTGAGAAAAG-TTTTTCCAAGATGAATTTTAAAGTTGTGTGAG
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTT-TAAGATGAATTTTAAAGTTGT-TGAG
* * * * * * *
18023340 CCTCTGTTGAAATGAACTTTTTTAAGATGAAA
64 CCTTTGCTGAGAGGAGCTTTTTCAAGATGAAT
* * *
18023372 TTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTTTTCTAAGATAAATTTTAAAGTTGTTGAGCC
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTTTAAGATGAATTTTAAAGTTGTTGAGCC
* *
18023437 --T-CT--------TTTTTTCAAGATAAAT
66 TTTGCTGAGAGGAGCTTTTTCAAGATGAAT
* * * * * * * *
18023456 TTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGGATTTTTAAAATTATTAAGC
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTTTAAGAT-GAATTTTAAAGTTGTTGAGC
* * * *
18023521 CTTTGCTTATAGGAGTTTTTTTAACGATGAAT
65 CTTTGCTGAGAGGAGCTTTTTCAA-GATGAAT
* * *
18023553 TTTTAAAGTTATTGAGCCTTTACTTAGAAGAG-TTTTTTCAAGATGAATTTTTAAAGTTGTTGAG
1 TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTTT-AAGATGAA-TTTTAAAGTTGTTGAG
* * *
18023617 -CTTCTGCTTAGATGAGCCTTTTCAAGATGAAT
64 CCTT-TGCTGAGAGGAGCTTTTTCAAGATGAAT
* * * * *
18023649 TTTAAAAGTTGTTAAGCCTTTGATTG-GAGGAGCTTTTT
1 TTTTAAAGTTATTGAGCCTCT-ACTGAGAGGAGCTTTTT
18023687 AAATTAAAAA
Statistics
Matches: 405, Mismatches: 79, Indels: 47
0.76 0.15 0.09
Matches are distributed among these distances:
84 52 0.13
85 16 0.04
87 1 0.00
88 2 0.00
92 1 0.00
93 1 0.00
95 28 0.07
96 167 0.41
97 105 0.26
98 32 0.08
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (95 bp):
TTTTAAAGTTATTGAGCCTCTACTGAGAGGAGCTTTTTTAAGATGAATTTTAAAGTTGTTGAGCC
TTTGCTGAGAGGAGCTTTTTCAAGATGAAT
Found at i:18023362 original size:145 final size:143
Alignment explanation
Indices: 18023069--18023686 Score: 575
Period size: 145 Copynumber: 4.3 Consensus size: 143
18023059 CGAAGTTATG
* * ** * * **
18023069 TTTCAAGAAAAAATTTTAAAGTTATTGAGCCCCTGCTTAGAGGAGCTTTCCCAAGATGATGAATT
1 TTTCAAG-ATAAATTTTAAAGTTATTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGA--AATT
* ** * * *
18023134 TTAAACTT-TTGAGCCTCTGGTTAGAAGAGCTTTTCCAAGATGAAAATTTTAAAGTTGTTGAGCT
63 TTAAAGTTATTGAGCCTCTACTTAGAAGAGTTTTTCCAAGATG-AATTTTTAAAGTTGTTGAGCC
*
18023198 TCTGCTGAGAGGAGCTT
127 TCTGCTGAAAGGAGCTT
* * * *
18023215 TTTTAAGATAAATTTATAAAGTTGTTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGGATTTTT
1 TTTCAAGATAAATTT-TAAAGTTATTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGAAATTTT
* *
18023280 AAAGTTATTGAGCCTCTACTGAGAAAAGTTTTTCCAAGATGAA-TTTTAAAGTTGTGTGAGCCTC
65 AAAGTTATTGAGCCTCTACTTAGAAGAGTTTTTCCAAGATGAATTTTTAAAGTTGT-TGAGCCTC
* * *
18023344 TGTTGAAATGAACTT
129 TGCTGAAAGGAGCTT
* * * *
18023359 TTTTAAGATGAAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGC-TTTTCTAAGAT-AAATTT
1 TTTCAAGAT-AAATTTTAAAGTTATTAAGCCTTTACTGAGAGGAGCTTTTTC-AAGATGAAATTT
* *
18023422 TAAAGTTGTTGAG-C-CT-CTT-------TTTTT-CAAGATAAATTTTTAAAGTTGTTGAGCCTC
64 TAAAGTTATTGAGCCTCTACTTAGAAGAGTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTC
18023476 TGCTGAAAGGAGCTT
129 TGCTGAAAGGAGCTT
* * * * * * * * *
18023491 TTTCAAGATGGATTTTTAAAATTATTAAGCCTTTGCTTATAGGAGTTTTTTTAACGATGAATTTT
1 TTTCAAGAT-AAATTTTAAAGTTATTAAGCCTTTACTGAGAGGAGCTTTTTCAA-GATGAAATTT
* * *
18023556 TAAAGTTATTGAGCCTTTACTTAGAAGAGTTTTTTCAAGATGAATTTTTAAAGTTGTTGAGCTTC
64 TAAAGTTATTGAGCCTCTACTTAGAAGAGTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTC
* * * *
18023621 TGCTTAGATGAGCCT
129 TGCTGAAAGGAGCTT
* * *
18023636 TTTCAAGATGAATTTTAAAAGTTGTTAAGCCTTTGATTG-GAGGAGCTTTTT
1 TTTCAAGATAAATTTT-AAAGTTATTAAGCCTTT-ACTGAGAGGAGCTTTTT
18023687 AAATTAAAAA
Statistics
Matches: 388, Mismatches: 62, Indels: 45
0.78 0.13 0.09
Matches are distributed among these distances:
132 67 0.17
133 24 0.06
134 17 0.04
135 1 0.00
136 1 0.00
137 3 0.01
140 2 0.01
141 2 0.01
142 1 0.00
143 33 0.09
144 81 0.21
145 115 0.30
146 41 0.11
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (143 bp):
TTTCAAGATAAATTTTAAAGTTATTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGAAATTTTA
AAGTTATTGAGCCTCTACTTAGAAGAGTTTTTCCAAGATGAATTTTTAAAGTTGTTGAGCCTCTG
CTGAAAGGAGCTT
Found at i:18023451 original size:36 final size:38
Alignment explanation
Indices: 18023405--18023476 Score: 130
Period size: 37 Copynumber: 1.9 Consensus size: 38
18023395 TGAGAGGAGC
18023405 TTTTCTAAGATAAA-TTTTAAAGTTGTTGAGCCTCTTT
1 TTTTCTAAGATAAATTTTTAAAGTTGTTGAGCCTCTTT
18023442 TTTTC-AAGATAAATTTTTAAAGTTGTTGAGCCTCT
1 TTTTCTAAGATAAATTTTTAAAGTTGTTGAGCCTCT
18023477 GCTGAAAGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 8 0.24
37 26 0.76
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (38 bp):
TTTTCTAAGATAAATTTTTAAAGTTGTTGAGCCTCTTT
Found at i:18023681 original size:277 final size:277
Alignment explanation
Indices: 18023164--18023685 Score: 703
Period size: 277 Copynumber: 1.9 Consensus size: 277
18023154 TTAGAAGAGC
* * *
18023164 TTTTCCAAGATGAAAATTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTTAAGATAAATT
1 TTTTCCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATAAATT
* * *
18023229 TATAAAGTTGTTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGGATTTTTAAAGTTATTGAGCC
66 TATAAAATTATTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGAATTTTTAAAGTTATTGAGCC
*
18023294 TCTACTGAGAAAAGTTTTTCCAAGATGAATTTTAAAGTTGTGTGAGCCTCTGTTGAAATGAACTT
131 TCTACTGAGAAAAGTTTTTCCAAGATGAATTTTAAAGTTGTGTGAGCCTCTGTTGAAATGAACCT
* *
18023359 TTTTAAGATGAAATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTTTTCTAAGATAAATTTTA
196 TTTCAAGATGAAATTTTAAAGTTATTAAGCCTCTGCTGAGAGGAGCTTTTCTAAGATAAATTTTA
18023424 AAGTTGTTGAGCCTCTT
261 AAGTTGTTGAGCCTCTT
* * **
18023441 TTTTTCAAGAT-AAATTTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGGATT
1 TTTTCCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATAAATT
* * * * * *
18023505 TTTAAAATTATTAAGCCTTTGCTTATAGGAGTTTTTTTAACGATGAATTTTTAAAGTTATTGAGC
66 TATAAAATTATTAAGCCTTTACTGAGAGGAGCTTTTTCAA-GATGAATTTTTAAAGTTATTGAGC
* * * * * * *
18023570 CTTTACTTAGAAGAGTTTTTTCAAGATGAATTTTTAAAGTTGT-TGAGCTTCTGCTT-AGATGAG
130 CTCTACTGAGAAAAGTTTTTCCAAGATGAA-TTTTAAAGTTGTGTGAGCCTCTG-TTGAAATGAA
* * *
18023633 CCTTTTCAAGATG-AATTTTAAAAGTTGTTAAGCCTTTGATTG-GAGGAGCTTTT
193 CCTTTTCAAGATGAAATTTT-AAAGTTATTAAGCCTCTG-CTGAGAGGAGCTTTT
18023686 TAAATTAAAA
Statistics
Matches: 211, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
276 85 0.40
277 110 0.52
278 16 0.08
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (277 bp):
TTTTCCAAGATGAAAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATAAATT
TATAAAATTATTAAGCCTTTACTGAGAGGAGCTTTTTCAAGATGAATTTTTAAAGTTATTGAGCC
TCTACTGAGAAAAGTTTTTCCAAGATGAATTTTAAAGTTGTGTGAGCCTCTGTTGAAATGAACCT
TTTCAAGATGAAATTTTAAAGTTATTAAGCCTCTGCTGAGAGGAGCTTTTCTAAGATAAATTTTA
AAGTTGTTGAGCCTCTT
Found at i:18023686 original size:97 final size:97
Alignment explanation
Indices: 18023442--18023686 Score: 257
Period size: 97 Copynumber: 2.5 Consensus size: 97
18023432 GAGCCTCTTT
* * * * *
18023442 TTTTCAAGATAAATTTTTAAAGTTGTTGAGCCTCTG-CTGAAAGGAGC-TTTTTCAAGATGGATT
1 TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTTTGATTG-GAGGAGCTTTTTTCAAGATGAATT
* **
18023505 TTTAAAATTATTAAGCCTTTGCTTATAGGAGTT
65 TTTAAAATTATTAAGCCTTTGCTTAGAGGAGCC
* * * *
18023538 TTTTTAACGATGAATTTTTAAAGTTATTGAGCCTTT-ACTTAGAAGAG-TTTTTTCAAGATGAAT
1 TTTTCAA-GATGAATTTTTAAAGTTGTTGAGCCTTTGA-TTGGAGGAGCTTTTTTCAAGATGAAT
* * * *
18023601 TTTTAAAGTTGTTGAG-CTTCTGCTTAGATGAGCC
64 TTTTAAAATTATTAAGCCTT-TGCTTAGAGGAGCC
* *
18023635 TTTTCAAGATGAATTTTAAAAGTTGTTAAGCCTTTGATTGGAGGAGCTTTTT
1 TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTTTGATTGGAGGAGCTTTTT
18023687 AAATTAAAAA
Statistics
Matches: 120, Mismatches: 22, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
96 41 0.34
97 78 0.65
98 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (97 bp):
TTTTCAAGATGAATTTTTAAAGTTGTTGAGCCTTTGATTGGAGGAGCTTTTTTCAAGATGAATTT
TTAAAATTATTAAGCCTTTGCTTAGAGGAGCC
Found at i:18023849 original size:11 final size:11
Alignment explanation
Indices: 18023833--18023857 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18023823 TATTTATTTA
18023833 TTTTTTTTCTT
1 TTTTTTTTCTT
18023844 TTTTTTTTCTT
1 TTTTTTTTCTT
18023855 TTT
1 TTT
18023858 CTGGTAGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:18027365 original size:36 final size:36
Alignment explanation
Indices: 18027318--18027386 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
18027308 GGCACATTGA
*
18027318 TTAATCAATGCTTCTTTAACGAAGTAACTCTGTCCT
1 TTAATCAATGCTTCTTTAACAAAGTAACTCTGTCCT
*
18027354 TTAATCAATGCTTCTTTAGCAAAGTAACTCTGT
1 TTAATCAATGCTTCTTTAACAAAGTAACTCTGT
18027387 ACTTCCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (36 bp):
TTAATCAATGCTTCTTTAACAAAGTAACTCTGTCCT
Found at i:18030031 original size:21 final size:22
Alignment explanation
Indices: 18029976--18030031 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
18029966 AAGATAAAAT
* *
18029976 TATT-TAATCTAATTTTATTCA
1 TATTATAATCTTATTCTATTCA
* * *
18029997 TAATATCATTTTATTCTA-TCA
1 TATTATAATCTTATTCTATTCA
18030018 TATTATAATCTTAT
1 TATTATAATCTTAT
18030032 ATATCAAATA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTATAATCTTATTCTATTCA
Found at i:18031396 original size:23 final size:22
Alignment explanation
Indices: 18031355--18031397 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
18031345 TATGCAAATA
*
18031355 TTTAAAAAATTAAATAAATAAG
1 TTTAAAAAATTAAAAAAATAAG
*
18031377 TTTAAAAGTATTAAAAAAATA
1 TTTAAAA-AATTAAAAAAATA
18031398 TCTTAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
TTTAAAAAATTAAAAAAATAAG
Found at i:18038071 original size:19 final size:18
Alignment explanation
Indices: 18038033--18038074 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
18038023 GGTAAATAAA
18038033 AATTT-ATAATAATGAAT
1 AATTTAATAATAATGAAT
*
18038050 AATTTAATAATAAATTAAT
1 AATTTAATAAT-AATGAAT
18038069 AATTTA
1 AATTTA
18038075 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.23
18 5 0.23
19 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
AATTTAATAATAATGAAT
Found at i:18038588 original size:11 final size:11
Alignment explanation
Indices: 18038570--18038611 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
18038560 AATCCCATAA
18038570 GAGATTTGTTT
1 GAGATTTGTTT
*
18038581 GGGATTTGTTT
1 GAGATTTGTTT
18038592 GAGATTTGTTT
1 GAGATTTGTTT
18038603 GAGATTTGT
1 GAGATTTGT
18038612 CAGATATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:18038716 original size:52 final size:52
Alignment explanation
Indices: 18038636--18038792 Score: 208
Period size: 52 Copynumber: 3.0 Consensus size: 52
18038626 TGGATAAGAA
* *
18038636 GACTTGCAAAAGAAGAATTCTAAGAG-AAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAAAGAAGAATTCTAAAAGAAAAG-GGATTCTTAATAGGCAAGTTT
*
18038688 GACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAAAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
* * * * ** *
18038740 GACTTACAACAGAAGAATTCTAAGAGGAGTGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAAAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
18038792 G
1 G
18038793 TATAGTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 90 0.96
53 4 0.04
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (52 bp):
GACTTGCAAAAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
Found at i:18039680 original size:11 final size:11
Alignment explanation
Indices: 18039662--18039703 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
18039652 AATCCCATAA
18039662 GAGATTTGTTT
1 GAGATTTGTTT
*
18039673 GGGATTTGTTT
1 GAGATTTGTTT
18039684 GAGATTTGTTT
1 GAGATTTGTTT
18039695 GAGATTTGT
1 GAGATTTGT
18039704 CAGATATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:18039808 original size:52 final size:52
Alignment explanation
Indices: 18039728--18039884 Score: 208
Period size: 52 Copynumber: 3.0 Consensus size: 52
18039718 TGGATAAGAA
* * *
18039728 GACTTGCAAAAGAAGAATTCTAAGAG-AAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGAAAAG-GGATTCTTAATAGGCAAGTTT
18039780 GACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
** * * ** *
18039832 GACTTATAAGAGAAGAATTCTAAGAGGAGTGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
18039884 G
1 G
18039885 TATGGTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 90 0.96
53 4 0.04
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGCAAGTTT
Found at i:18040744 original size:7 final size:8
Alignment explanation
Indices: 18040685--18040735 Score: 52
Period size: 8 Copynumber: 6.1 Consensus size: 8
18040675 GCTGACAAAT
18040685 TACAATTA
1 TACAATTA
18040693 TAC-ATTA
1 TACAATTA
18040700 TACAATTCTAA
1 TACAA-T-T-A
18040711 GTACAATTA
1 -TACAATTA
18040720 TACAATTA
1 TACAATTA
18040728 TA-AATTA
1 TACAATTA
18040735 T
1 T
18040736 TATAAATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
7 13 0.34
8 14 0.37
9 2 0.05
10 2 0.05
11 2 0.05
12 5 0.13
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (8 bp):
TACAATTA
Found at i:18044458 original size:7 final size:7
Alignment explanation
Indices: 18044446--18044492 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
18044436 ATTTAAACAA
18044446 TTTATTT
1 TTTATTT
18044453 TTTATTT
1 TTTATTT
*
18044460 TAT-TTT
1 TTTATTT
*
18044466 TTTGTTT
1 TTTATTT
18044473 TTAATATTT
1 TT--TATTT
18044482 TTTATTT
1 TTTATTT
18044489 TTTA
1 TTTA
18044493 GCAAAAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
6 5 0.15
7 23 0.68
9 6 0.18
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (7 bp):
TTTATTT
Found at i:18044490 original size:17 final size:18
Alignment explanation
Indices: 18044446--18044492 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
18044436 ATTTAAACAA
*
18044446 TTTATTTTTTATTTTATTT
1 TTTATTTTTTA-TATATTT
18044465 TTT-TGTTTTTA-ATATTT
1 TTTAT-TTTTTATATATTT
18044482 TTTATTTTTTA
1 TTTATTTTTTA
18044493 GCAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 14 0.56
18 2 0.08
19 9 0.36
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTATTTTTTATATATTT
Found at i:18044760 original size:6 final size:6
Alignment explanation
Indices: 18044745--18044809 Score: 96
Period size: 6 Copynumber: 10.8 Consensus size: 6
18044735 AAATAACATA
* *
18044745 AAAAAT AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAAT AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG
18044794 AAAAAG -AAAAG AAAAA
1 AAAAAG AAAAAG AAAAA
18044810 ACCTACGAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
5 5 0.09
6 44 0.81
7 5 0.09
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:18045203 original size:9 final size:10
Alignment explanation
Indices: 18045180--18045208 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
18045170 CAGCAACCCA
18045180 AAAAAATTTT
1 AAAAAATTTT
18045190 AAAAAATTTT
1 AAAAAATTTT
18045200 AAAAAATTT
1 AAAAAATTT
18045209 CCCAGTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:18047259 original size:22 final size:22
Alignment explanation
Indices: 18047234--18047289 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
18047224 ATTTTGGAAC
18047234 ATAAATAAAAAAAAGTAAAATA
1 ATAAATAAAAAAAAGTAAAATA
18047256 AT-AATAATAAAAAAGTAAAATA
1 ATAAATAA-AAAAAAGTAAAATA
*
18047278 AAAAATAAAAAA
1 ATAAATAAAAAA
18047290 TAAATTAGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 5 0.16
22 21 0.68
23 5 0.16
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.18
Consensus pattern (22 bp):
ATAAATAAAAAAAAGTAAAATA
Found at i:18047282 original size:7 final size:7
Alignment explanation
Indices: 18047236--18047293 Score: 50
Period size: 7 Copynumber: 8.0 Consensus size: 7
18047226 TTTGGAACAT
18047236 AAATAAA
1 AAATAAA
18047243 AAA-AAGTA
1 AAATAA--A
18047251 AAATAATA
1 AAATAA-A
18047259 ATAATAAA
1 A-AATAAA
18047267 AAAGT--A
1 AAA-TAAA
18047273 AAATAAA
1 AAATAAA
18047280 AAATAAA
1 AAATAAA
18047287 AAATAAA
1 AAATAAA
18047294 TTAGACAAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
5 1 0.02
6 6 0.14
7 20 0.45
8 10 0.23
9 7 0.16
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (7 bp):
AAATAAA
Found at i:18048748 original size:2 final size:2
Alignment explanation
Indices: 18048741--18048767 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18048731 AATCCATCTT
18048741 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18048768 CTACTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18048820 original size:3 final size:3
Alignment explanation
Indices: 18048812--18048953 Score: 122
Period size: 3 Copynumber: 48.7 Consensus size: 3
18048802 TCTATTGAAC
* * *
18048812 TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA -TA ATG TTA -TA CTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
18048856 -TA TTA TTA TTA TTA TTA TTA TTA TTA TTGA TTTA TATG TTA -TA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A -TTA T-TA TTA TTA TTA
*
18048902 -TA TTA TTA TTA TTA TTA TTA TTA TT- TCTA TT- TTA TTT TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
18048944 TTA TT- TTA TT
1 TTA TTA TTA TT
18048954 TTCTTTCCTA
Statistics
Matches: 118, Mismatches: 7, Indels: 28
0.77 0.05 0.18
Matches are distributed among these distances:
2 17 0.14
3 91 0.77
4 8 0.07
5 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:18048924 original size:46 final size:45
Alignment explanation
Indices: 18048812--18048926 Score: 196
Period size: 46 Copynumber: 2.5 Consensus size: 45
18048802 TCTATTGAAC
18048812 TTATTATTATTATTATTATTTATTATTATTATAATGTTATACTATA
1 TTATTATTATTATTATTA-TTATTATTATTATAATGTTATACTATA
18048858 TTATTATTATTATTATTATTATTATTGATT-TATATGTTATACTATA
1 TTATTATTATTATTATTATTATTATT-ATTATA-ATGTTATACTATA
18048904 TTATTATTATTATTATTATTATT
1 TTATTATTATTATTATTATTATT
18048927 TCTATTTTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
45 10 0.15
46 57 0.85
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.63
Consensus pattern (45 bp):
TTATTATTATTATTATTATTATTATTATTATAATGTTATACTATA
Found at i:18048938 original size:11 final size:11
Alignment explanation
Indices: 18048917--18048960 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
18048907 TTATTATTAT
18048917 TATTATTATTTC
1 TATT-TTATTTC
*
18048929 TATTTTATTTT
1 TATTTTATTTC
18048940 TATTTTATTT-
1 TATTTTATTTC
*
18048950 TATTTTCTTTC
1 TATTTTATTTC
18048961 CTAATCGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 9 0.31
11 16 0.55
12 4 0.14
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (11 bp):
TATTTTATTTC
Found at i:18049320 original size:20 final size:20
Alignment explanation
Indices: 18049297--18049336 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18049287 AATTTCTAGA
*
18049297 TTTAGATTTGGGTTTCTGGG
1 TTTAGATTTAGGTTTCTGGG
18049317 TTTAGATTTAGGTTTCTGGG
1 TTTAGATTTAGGTTTCTGGG
18049337 AGGTGTCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.05, G:0.33, T:0.50
Consensus pattern (20 bp):
TTTAGATTTAGGTTTCTGGG
Found at i:18049832 original size:23 final size:24
Alignment explanation
Indices: 18049806--18049857 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
18049796 TATTTTAAGC
18049806 TTATTTTATTTTA-T-TTTTAATTT
1 TTATTTTATTTTACTATTTT-ATTT
18049829 TTA--TTATTTTACTGATTTTATTT
1 TTATTTTATTTTACT-ATTTTATTT
18049852 TTATTT
1 TTATTT
18049858 GAGAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
21 8 0.33
22 1 0.04
23 10 0.42
24 4 0.17
25 1 0.04
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (24 bp):
TTATTTTATTTTACTATTTTATTT
Found at i:18053872 original size:11 final size:11
Alignment explanation
Indices: 18053856--18053895 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
18053846 TGCTTATTAT
18053856 TTTAATTTCAA
1 TTTAATTTCAA
*
18053867 TTTAATTAT-AT
1 TTTAATT-TCAA
18053878 TTTAATTTCAA
1 TTTAATTTCAA
18053889 TTTAATT
1 TTTAATT
18053896 ATATTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 1 0.04
11 23 0.92
12 1 0.04
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTAATTTCAA
Found at i:18053878 original size:22 final size:22
Alignment explanation
Indices: 18053853--18053900 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
18053843 AAGTGCTTAT
18053853 TATTTTAATTTCAATTTAATTA
1 TATTTTAATTTCAATTTAATTA
18053875 TATTTTAATTTCAATTTAATTA
1 TATTTTAATTTCAATTTAATTA
18053897 TATT
1 TATT
18053901 AAAATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTTTAATTTCAATTTAATTA
Found at i:18053906 original size:22 final size:22
Alignment explanation
Indices: 18053859--18053906 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
18053849 TTATTATTTT
**
18053859 AATTTCAATTTAATTATATTTT
1 AATTTCAATTTAATTATATTAA
18053881 AATTTCAATTTAATTATATTAA
1 AATTTCAATTTAATTATATTAA
18053903 AATT
1 AATT
18053907 ATTTGTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
AATTTCAATTTAATTATATTAA
Found at i:18058169 original size:33 final size:33
Alignment explanation
Indices: 18058114--18058260 Score: 120
Period size: 33 Copynumber: 4.5 Consensus size: 33
18058104 ATCACCTCTT
*
18058114 GTTAGAGGAGTTCTTTTAAAGTTTCATTGCCTTCG
1 GTTAGAGGAG-T-TTTTAAAGTTTCATAGCCTTCG
*
18058149 GTTAGAGGAGTTTTTAAAGTTTCATAACCTTTC-
1 GTTAGAGGAGTTTTTAAAGTTTCATAGCC-TTCG
* * * *
18058182 GTTAAAGGAGTTTTTGAGGTTTCATAGCCTTTG
1 GTTAGAGGAGTTTTTAAAGTTTCATAGCCTTCG
* * * * * * *
18058215 GATAAAGAAATTTTTAAA--TTCATTGCTTTTG
1 GTTAGAGGAGTTTTTAAAGTTTCATAGCCTTCG
*
18058246 GTTAGAAGAGTTTTT
1 GTTAGAGGAGTTTTT
18058261 TTCAAATATC
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
31 21 0.23
32 2 0.02
33 54 0.59
34 4 0.04
35 10 0.11
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.44
Consensus pattern (33 bp):
GTTAGAGGAGTTTTTAAAGTTTCATAGCCTTCG
Found at i:18058712 original size:33 final size:34
Alignment explanation
Indices: 18058670--18058742 Score: 96
Period size: 33 Copynumber: 2.2 Consensus size: 34
18058660 GTTTTCTTTC
* *
18058670 AAGTATCATAGCCTTTGGTT-GA-AGATGTTTTTA
1 AAGTCTCATAGCCTTTGGTTAGAGAAAT-TTTTTA
*
18058703 AAGTCTCATAGTCTTTGGTTAGAGAAATTTTTTA
1 AAGTCTCATAGCCTTTGGTTAGAGAAATTTTTTA
18058737 AAGTCT
1 AAGTCT
18058743 TGTAGCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
33 18 0.51
34 14 0.40
35 3 0.09
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (34 bp):
AAGTCTCATAGCCTTTGGTTAGAGAAATTTTTTA
Found at i:18060187 original size:21 final size:21
Alignment explanation
Indices: 18060163--18060203 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18060153 TTTTGAATTT
* *
18060163 TATTTTATTGTTTTTATTTTA
1 TATTTTACTGTTATTATTTTA
18060184 TATTTTACTGTTATTATTTT
1 TATTTTACTGTTATTATTTT
18060204 TATGATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (21 bp):
TATTTTACTGTTATTATTTTA
Found at i:18060197 original size:27 final size:26
Alignment explanation
Indices: 18060146--18060206 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
18060136 TTTCTTTTTC
* *
18060146 TTTTCTATTTTGAATTTTATTTTATTG
1 TTTT-TATTTTGAATTTTATGTTATTA
18060173 TTTTTATTTT-ATATTTTACTGTTATTA
1 TTTTTATTTTGA-ATTTTA-TGTTATTA
18060200 TTTTTAT
1 TTTTTAT
18060207 GATATTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.03
26 12 0.40
27 17 0.57
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (26 bp):
TTTTTATTTTGAATTTTATGTTATTA
Found at i:18060201 original size:14 final size:13
Alignment explanation
Indices: 18060159--18060232 Score: 69
Period size: 13 Copynumber: 5.5 Consensus size: 13
18060149 TCTATTTTGA
*
18060159 ATTTTATTTTATT
1 ATTTTATGTTATT
* *
18060172 GTTTTTATTTTA-T
1 -ATTTTATGTTATT
18060185 ATTTTACTGTTATT
1 ATTTTA-TGTTATT
*
18060199 ATTTTTATGATATT
1 A-TTTTATGTTATT
*
18060213 ATTTCATGTTATT
1 ATTTTATGTTATT
18060226 ATTTTAT
1 ATTTTAT
18060233 TACTTATTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
12 5 0.10
13 21 0.42
14 19 0.38
15 5 0.10
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (13 bp):
ATTTTATGTTATT
Found at i:18062370 original size:13 final size:14
Alignment explanation
Indices: 18062348--18062385 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
18062338 AAAAAGATTA
18062348 TTTA-TTTATTTAC
1 TTTATTTTATTTAC
18062361 -TTATTTTATTTAC
1 TTTATTTTATTTAC
*
18062374 TTTTTTTTATTT
1 TTTATTTTATTT
18062386 GTCTAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 9 0.41
14 10 0.45
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTTAC
Found at i:18062502 original size:17 final size:17
Alignment explanation
Indices: 18062482--18062567 Score: 65
Period size: 17 Copynumber: 5.1 Consensus size: 17
18062472 TGAAATATTC
18062482 AATAAAAATAAATAAAT
1 AATAAAAATAAATAAAT
* *
18062499 AATAAAAATTAGT-AA-
1 AATAAAAATAAATAAAT
* *
18062514 AATAAAAGA-AATTGAA-
1 AATAAAA-ATAAATAAAT
18062530 AATAAAAATAAATTAAATT
1 AATAAAAATAAA-TAAA-T
18062549 AA-AAAAATAAAGTAAAT
1 AATAAAAATAAA-TAAAT
18062566 AA
1 AA
18062568 AATTAGGAGA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
15 10 0.18
16 14 0.25
17 17 0.30
18 13 0.23
19 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (17 bp):
AATAAAAATAAATAAAT
Found at i:18062547 original size:22 final size:21
Alignment explanation
Indices: 18062485--18062572 Score: 61
Period size: 22 Copynumber: 3.8 Consensus size: 21
18062475 AATATTCAAT
*
18062485 AAAAATAAATAAATAATAAAAA
1 AAAAATAAATAAA-ATTAAAAA
*
18062507 TTAGTAAAATAAA-AGAAATTGAAAAT
1 --A--AAAATAAATA-AAATT-AAAAA
*
18062533 AAAAATAAATTAAATTAAAAA
1 AAAAATAAATAAAATTAAAAA
18062554 AATAAAGTAAATAAAATTA
1 AA-AAA-TAAATAAAATTA
18062573 GGAGAAAATG
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
21 6 0.12
22 16 0.31
23 11 0.21
24 2 0.04
25 3 0.06
26 14 0.27
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAAATAAATAAAATTAAAAA
Found at i:18062556 original size:18 final size:17
Alignment explanation
Indices: 18062533--18062569 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
18062523 AATTGAAAAT
*
18062533 AAAAATAAATTAAATTAA
1 AAAAATAAAGTAAA-TAA
18062551 AAAAATAAAGTAAATAA
1 AAAAATAAAGTAAATAA
18062568 AA
1 AA
18062570 TTAGGAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
AAAAATAAAGTAAATAA
Found at i:18062564 original size:23 final size:24
Alignment explanation
Indices: 18062482--18062572 Score: 68
Period size: 23 Copynumber: 3.8 Consensus size: 24
18062472 TGAAATATTC
18062482 AATAAAAATAAAT-AAA-TAATAAA
1 AATAAAAATAAATAAAATTAA-AAA
*
18062505 AATTAGTAAAATAAA-AGAAATT--GAA
1 AA-TA--AAAATAAATA-AAATTAAAAA
*
18062530 AATAAAAATAAATTAAATTAAAAA
1 AATAAAAATAAATAAAATTAAAAA
*
18062554 AAT-AAAGTAAATAAAATTA
1 AATAAAAATAAATAAAATTA
18062573 GGAGAAAATG
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
22 13 0.24
23 16 0.30
24 9 0.17
25 4 0.07
26 8 0.15
27 3 0.06
28 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (24 bp):
AATAAAAATAAATAAAATTAAAAA
Found at i:18063014 original size:14 final size:14
Alignment explanation
Indices: 18062995--18063021 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
18062985 AGGTTAATAA
18062995 TAATAATAATAATC
1 TAATAATAATAATC
18063009 TAATAATAATAAT
1 TAATAATAATAAT
18063022 AATAATACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
TAATAATAATAATC
Found at i:18063014 original size:20 final size:21
Alignment explanation
Indices: 18062989--18063052 Score: 85
Period size: 20 Copynumber: 3.0 Consensus size: 21
18062979 CCAAAAAGGT
18062989 TAATAATAATAATAATAAT-C
1 TAATAATAATAATAATAATAC
18063009 TAATAATAATAATAATAATAC
1 TAATAATAATAATAATAATAC
*
18063030 CATATAATACACTAATAATAATA
1 TA-ATAATA-A-TAATAATAATA
18063053 ATATGATACA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 19 0.49
21 2 0.05
22 6 0.15
23 1 0.03
24 11 0.28
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (21 bp):
TAATAATAATAATAATAATAC
Found at i:18063067 original size:30 final size:30
Alignment explanation
Indices: 18062999--18063094 Score: 99
Period size: 33 Copynumber: 3.1 Consensus size: 30
18062989 TAATAATAAT
18062999 AATAATA-ATCTAATAATAATAATAATAATACC
1 AATAATACA-CTAATAATAATAAT-ATAATA-C
*
18063031 ATATAATACACTAATAATAATAATATGATAC
1 A-ATAATACACTAATAATAATAATATAATAC
* *
18063062 AATAATACTA-TAATAA-CATAATATAATAT
1 AATAATAC-ACTAATAATAATAATATAATAC
18063091 AATA
1 AATA
18063095 TAACCAAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
29 14 0.25
30 13 0.23
31 3 0.05
32 6 0.11
33 20 0.35
34 1 0.02
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.32
Consensus pattern (30 bp):
AATAATACACTAATAATAATAATATAATAC
Found at i:18063068 original size:3 final size:3
Alignment explanation
Indices: 18062989--18063055 Score: 75
Period size: 3 Copynumber: 21.7 Consensus size: 3
18062979 CCAAAAAGGT
*
18062989 TAA TAA TAA TAA TAA TAA T-C TAA TAA TAA TAA TAA TAA TACCA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA--A TAA
18063034 TAA TACA CTAA TAA TAA TAA TA
1 TAA TA-A -TAA TAA TAA TAA TA
18063056 TGATACAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
2 3 0.05
3 47 0.84
4 2 0.04
5 4 0.07
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18067112 original size:8 final size:8
Alignment explanation
Indices: 18067093--18067143 Score: 52
Period size: 8 Copynumber: 6.1 Consensus size: 8
18067083 TTAATTTATA
18067093 ATAATT-T
1 ATAATTGT
18067100 ATAATTGT
1 ATAATTGT
18067108 ATAATTGT
1 ATAATTGT
18067116 ACTTAGAATTGT
1 A--T--AATTGT
18067128 ATAA-TGT
1 ATAATTGT
18067135 ATAATTGT
1 ATAATTGT
18067143 A
1 A
18067144 ATTTGTCAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
7 13 0.34
8 16 0.42
10 2 0.05
12 7 0.18
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (8 bp):
ATAATTGT
Found at i:18068012 original size:52 final size:52
Alignment explanation
Indices: 18067942--18068098 Score: 226
Period size: 52 Copynumber: 3.0 Consensus size: 52
18067932 TATAACCATA
* * *
18067942 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTATAAGT
1 CAAACTTGCCTATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
* * *
18067994 CAAACTTGCCTATTAAGAATCCCTTTTCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
* *
18068046 CAAACTTACCTATTAAGAAT-CCTCTTTCTCTTAGAATTCTTCTTTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTC-TTCTCTTAGAATTCTTCTCTTGTAAGT
18068098 C
1 C
18068099 TTCTTATCCA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
51 3 0.03
52 90 0.97
ACGTcount: A:0.26, C:0.25, G:0.08, T:0.41
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
Found at i:18068139 original size:11 final size:11
Alignment explanation
Indices: 18068123--18068164 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
18068113 GCAATATCTG
18068123 ACAAATCTCAA
1 ACAAATCTCAA
18068134 ACAAATCTCAA
1 ACAAATCTCAA
*
18068145 ACAAATCCCAA
1 ACAAATCTCAA
18068156 ACAAATCTC
1 ACAAATCTC
18068165 TTATGGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:18069120 original size:52 final size:52
Alignment explanation
Indices: 18069034--18069190 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
18069024 TATAACCATA
* ** * * *
18069034 CAAACTTGCCCATTAAGAATCCCACTCCTCTTAGAATTCTTCTGTTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTTCTCTTAGAATTCTTCTCTTGCAAGT
*
18069086 CAAACTTGCCTATTAAGAATCCCTTTTCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCTTTTCTCTTAGAATTCTTCTCTTGCAAGT
* *
18069138 CAAACTTACCTATTAAGAAT-CCTCTTTCTCTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCCT-TTTCTCTTAGAATTCTTCTCTTGCAAGT
18069190 C
1 C
18069191 TTCTTATCCA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
51 3 0.03
52 91 0.97
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCCTTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:18069231 original size:11 final size:11
Alignment explanation
Indices: 18069215--18069256 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
18069205 ACAATATCTG
18069215 ACAAATCTCAA
1 ACAAATCTCAA
18069226 ACAAATCTCAA
1 ACAAATCTCAA
*
18069237 ACAAATCCCAA
1 ACAAATCTCAA
18069248 ACAAATCTC
1 ACAAATCTC
18069257 TTATGGGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:18069763 original size:11 final size:11
Alignment explanation
Indices: 18069747--18069782 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
18069737 CTTTTTTTAA
18069747 TAAATTATTAT
1 TAAATTATTAT
18069758 TAAATTATTAT
1 TAAATTATTAT
18069769 TAAATTATTCAT
1 TAAATTATT-AT
18069781 TA
1 TA
18069783 TTATAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TAAATTATTAT
Found at i:18069784 original size:18 final size:16
Alignment explanation
Indices: 18069761--18069797 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
18069751 TTATTATTAA
18069761 ATTATTATTAAATTATTC
1 ATTATTA-TAAATT-TTC
18069779 ATTATTATAAATTTTC
1 ATTATTATAAATTTTC
18069795 ATT
1 ATT
18069798 TACCTATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATTATAAATTTTC
Done.