Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168175.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_413, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27893
ACGTcount: A:0.65, C:0.05, G:0.12, T:0.17
Found at i:28 original size:17 final size:16
Alignment explanation
Indices: 4--84 Score: 66
Period size: 17 Copynumber: 5.2 Consensus size: 16
1 AAT
4 AAATAAATAAAGAAAA
1 AAATAAATAAAGAAAA
20 AAGATAAATAAAGCACAAA
1 AA-ATAAATAAAG-A-AAA
39 AAA-AAATAAA-AAAA
1 AAATAAATAAAGAAAA
*
53 ACAATAAA-AAA-AATA
1 A-AATAAATAAAGAAAA
*
68 AAA-AAGT-AAGAAAA
1 AAATAAATAAAGAAAA
82 AAA
1 AAA
85 AAAAGGTCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
13 4 0.07
14 12 0.22
15 10 0.18
16 5 0.09
17 17 0.31
18 2 0.04
19 5 0.09
ACGTcount: A:0.80, C:0.04, G:0.06, T:0.10
Consensus pattern (16 bp):
AAATAAATAAAGAAAA
Found at i:53 original size:12 final size:12
Alignment explanation
Indices: 36--65 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26 AATAAAGCAC
36 AAAAAAAAATAA
1 AAAAAAAAATAA
*
48 AAAAAACAATAA
1 AAAAAAAAATAA
60 AAAAAA
1 AAAAAA
66 TAAAAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.07
Consensus pattern (12 bp):
AAAAAAAAATAA
Found at i:86 original size:21 final size:20
Alignment explanation
Indices: 16--87 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
6 ATAAATAAAG
* * *
16 AAAAAAGATAAATAAAGCACA
1 AAAAAAAATAAAAAAAACA-A
37 AAAAAAAATAAAAAAAACAA
1 AAAAAAAATAAAAAAAACAA
*
57 TAAAAAAAATAAAAAAGTAAGAA
1 -AAAAAAAATAAAAAA--AACAA
80 AAAAAAAA
1 AAAAAAAA
88 AGGTCAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
20 1 0.02
21 31 0.70
22 8 0.18
23 4 0.09
ACGTcount: A:0.82, C:0.04, G:0.06, T:0.08
Consensus pattern (20 bp):
AAAAAAAATAAAAAAAACAA
Found at i:97 original size:16 final size:17
Alignment explanation
Indices: 57--89 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47 AAAAAAACAA
57 TAAAAAAAATAAAAAAG
1 TAAAAAAAATAAAAAAG
*
74 TAAGAAAAA-AAAAAAG
1 TAAAAAAAATAAAAAAG
90 GTCAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (17 bp):
TAAAAAAAATAAAAAAG
Found at i:507 original size:8 final size:8
Alignment explanation
Indices: 496--570 Score: 51
Period size: 8 Copynumber: 8.6 Consensus size: 8
486 TTAAAAATAT
496 AAAATAAA
1 AAAATAAA
504 AAAATTAATAA
1 AAAA-T-A-AA
515 AAAATAAA
1 AAAATAAA
523 TAAAATAAA
1 -AAAATAAA
*
532 CAAAAGGAAA
1 -AAAA-TAAA
* *
542 AAAGTAAC
1 AAAATAAA
* *
550 AAAGTAAG
1 AAAATAAA
558 AAAATAAA
1 AAAATAAA
566 AAAAT
1 AAAAT
571 TAGCGAATCA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
8 26 0.48
9 17 0.31
10 5 0.09
11 6 0.11
ACGTcount: A:0.76, C:0.03, G:0.07, T:0.15
Consensus pattern (8 bp):
AAAATAAA
Found at i:513 original size:19 final size:20
Alignment explanation
Indices: 491--528 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
481 ATTTTTTAAA
*
491 AATATAAAATAAA-AAAATT
1 AATAAAAAATAAATAAAATT
510 AATAAAAAATAAATAAAAT
1 AATAAAAAATAAATAAAAT
529 AAACAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAAAAAATAAATAAAATT
Found at i:734 original size:12 final size:12
Alignment explanation
Indices: 713--754 Score: 59
Period size: 11 Copynumber: 3.5 Consensus size: 12
703 ATGAAAGATG
713 AAAAAATAAAAT
1 AAAAAATAAAAT
*
725 AAAAAGT-AAAT
1 AAAAAATAAAAT
736 AAAAAATATAAAT
1 AAAAAATA-AAAT
749 AAAAAA
1 AAAAAA
755 AAAGAATTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 10 0.38
12 6 0.23
13 10 0.38
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:741 original size:13 final size:12
Alignment explanation
Indices: 713--755 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
703 ATGAAAGATG
713 AAAAAATAAA-A
1 AAAAAATAAATA
*
724 TAAAAAGTAAATA
1 -AAAAAATAAATA
737 AAAAATATAAATA
1 AAAAA-ATAAATA
750 AAAAAA
1 AAAAAA
756 AAGAATTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 15 0.56
13 12 0.44
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.16
Consensus pattern (12 bp):
AAAAAATAAATA
Found at i:743 original size:18 final size:16
Alignment explanation
Indices: 714--757 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
704 TGAAAGATGA
714 AAAAATAAAATAAAAAGT
1 AAAAA-AAAATAAAAA-T
*
732 AAATAAAAAATATAAAT
1 AAA-AAAAAATAAAAAT
749 AAAAAAAAA
1 AAAAAAAAA
758 GAATTGCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 6 0.25
17 4 0.17
18 12 0.50
19 2 0.08
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (16 bp):
AAAAAAAAATAAAAAT
Found at i:948 original size:21 final size:20
Alignment explanation
Indices: 891--948 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
881 AATCAAATTT
891 GAGGAAAAAT-TGAAA-AAA
1 GAGGAAAAATATGAAAGAAA
*
909 GAAGAAAAATA--AAATGAAA
1 GAGGAAAAATATGAAA-GAAA
928 GAGGCAAAAATATGAAAGAAA
1 GAGG-AAAAATATGAAAGAAA
949 AGAAAAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 3 0.09
18 9 0.28
19 6 0.19
20 7 0.22
21 4 0.12
22 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.21, T:0.10
Consensus pattern (20 bp):
GAGGAAAAATATGAAAGAAA
Found at i:1177 original size:19 final size:18
Alignment explanation
Indices: 1153--1235 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
1143 AAAAAATTAT
1153 GAAAATATAAACAAAGAAA
1 GAAAATATAAA-AAAGAAA
1172 G-AAA-ATAAAAAAGAAAA
1 GAAAATATAAAAAAG-AAA
* *
1189 GAAAACA-AAAAAACAACA
1 GAAAATATAAAAAAGAA-A
* *
1207 AAAAATAT-AAAAAGTAA
1 GAAAATATAAAAAAGAAA
1224 GAAAATA-AAAAA
1 GAAAATATAAAAA
1236 GGACAAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
16 4 0.08
17 22 0.42
18 24 0.46
19 2 0.04
ACGTcount: A:0.78, C:0.05, G:0.08, T:0.08
Consensus pattern (18 bp):
GAAAATATAAAAAAGAAA
Found at i:1189 original size:17 final size:16
Alignment explanation
Indices: 1159--1236 Score: 75
Period size: 17 Copynumber: 4.6 Consensus size: 16
1149 TTATGAAAAT
1159 ATAAACAAAGAAAGAAA
1 ATAAA-AAAGAAAGAAA
1176 ATAAAAAAGAAAAGAAA
1 ATAAAAAAG-AAAGAAA
* * *
1193 ACAAAAAAACAACAAAAA
1 A-TAAAAAAGAA-AGAAA
*
1211 ATATAAAAAGTAAGAAA
1 ATA-AAAAAGAAAGAAA
1228 ATAAAAAAG
1 ATAAAAAAG
1237 GACAAAAATT
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
16 10 0.20
17 23 0.46
18 17 0.34
ACGTcount: A:0.78, C:0.05, G:0.09, T:0.08
Consensus pattern (16 bp):
ATAAAAAAGAAAGAAA
Found at i:1619 original size:11 final size:11
Alignment explanation
Indices: 1605--1661 Score: 64
Period size: 11 Copynumber: 5.1 Consensus size: 11
1595 AAAAATTTTT
1605 AAAATAAATAA
1 AAAATAAATAA
*
1616 AAAATAAAGAA
1 AAAATAAATAA
1627 AAAATAAATAA
1 AAAATAAATAA
1638 TAGAAA-AAATAA
1 -A-AAATAAATAA
1650 AATAA-AAATAA
1 AA-AATAAATAA
1661 A
1 A
1662 CAAAAAGGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
10 1 0.02
11 30 0.73
12 7 0.17
13 3 0.07
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.16
Consensus pattern (11 bp):
AAAATAAATAA
Found at i:1631 original size:18 final size:16
Alignment explanation
Indices: 1610--1651 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
1600 TTTTTAAAAT
1610 AAATAAAAAATAAAGAAA
1 AAATAAAAAAT--AGAAA
*
1628 AAATAAATAATAGAAA
1 AAATAAAAAATAGAAA
1644 AAATAAAA
1 AAATAAAA
1652 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 12 0.55
18 10 0.45
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (16 bp):
AAATAAAAAATAGAAA
Found at i:1634 original size:27 final size:28
Alignment explanation
Indices: 1604--1661 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
1594 AAAAAATTTT
*
1604 TAAAATAA-ATAAAAAATAAAGA-AAAAA
1 TAAAATAATAGAAAAAATAAA-ATAAAAA
1631 T-AAATAATAGAAAAAATAAAATAAAAA
1 TAAAATAATAGAAAAAATAAAATAAAAA
1658 TAAA
1 TAAA
1662 CAAAAAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.26
27 18 0.67
28 2 0.07
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (28 bp):
TAAAATAATAGAAAAAATAAAATAAAAA
Found at i:1869 original size:22 final size:21
Alignment explanation
Indices: 1837--1878 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
1827 ATGAAAGATG
*
1837 AAAAATAAAATAAAAGTAAAT
1 AAAAATAAAATAAAAATAAAT
1858 AAAAATATAAATAAAAATAAA
1 AAAAATA-AAATAAAAATAAA
1879 GAAAGTGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (21 bp):
AAAAATAAAATAAAAATAAAT
Found at i:1870 original size:12 final size:12
Alignment explanation
Indices: 1837--1876 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
1827 ATGAAAGATG
1837 AAAAATA-AAAT
1 AAAAATATAAAT
*
1848 -AAAA-GTAAAT
1 AAAAATATAAAT
1858 AAAAATATAAAT
1 AAAAATATAAAT
1870 AAAAATA
1 AAAAATA
1877 AAGAAAGTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
10 8 0.33
11 4 0.17
12 12 0.50
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (12 bp):
AAAAATATAAAT
Found at i:1992 original size:24 final size:25
Alignment explanation
Indices: 1965--2041 Score: 84
Period size: 24 Copynumber: 3.0 Consensus size: 25
1955 AGAAAAAGCA
**
1965 AGAAAAAAAATAAAAAAGGAAAAT-
1 AGAAAAAAAATAAAAAAAAAAAATG
* *
1989 AGAAAATACATAAAAAAAAAAAATG
1 AGAAAAAAAATAAAAAAAAAAAATG
*
2014 AGAAAAAAGAAGAAAAAATAAAAAATG
1 AGAAAAAA-AATAAAAAA-AAAAAATG
2041 A
1 A
2042 AGAGGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 20 0.47
25 7 0.16
26 7 0.16
27 9 0.21
ACGTcount: A:0.78, C:0.01, G:0.12, T:0.09
Consensus pattern (25 bp):
AGAAAAAAAATAAAAAAAAAAAATG
Found at i:2004 original size:32 final size:33
Alignment explanation
Indices: 1968--2038 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 33
1958 AAAAGCAAGA
* * *
1968 AAAAAAATAAAAAAG-GAAAATAGAA-AATACAT
1 AAAAAAA-AAAAAAGAGAAAAAAGAAGAAAAAAT
*
2000 AAAAAAAAAAAATGAGAAAAAAGAAGAAAAAAT
1 AAAAAAAAAAAAAGAGAAAAAAGAAGAAAAAAT
2033 AAAAAA
1 AAAAAA
2039 TGAAGAGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 6 0.18
32 16 0.48
33 11 0.33
ACGTcount: A:0.80, C:0.01, G:0.10, T:0.08
Consensus pattern (33 bp):
AAAAAAAAAAAAAGAGAAAAAAGAAGAAAAAAT
Found at i:2305 original size:19 final size:18
Alignment explanation
Indices: 2275--2321 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
2265 ATGAAACTAT
*
2275 AAACAAAGAAAGAAAATAAA
1 AAACAAA-AAAG-AAACAAA
*
2295 AAACAAAAAAGATACAAA
1 AAACAAAAAAGAAACAAA
2313 AAACAAAAA
1 AAACAAAAA
2322 CAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 14 0.56
19 4 0.16
20 7 0.28
ACGTcount: A:0.81, C:0.09, G:0.06, T:0.04
Consensus pattern (18 bp):
AAACAAAAAAGAAACAAA
Found at i:2595 original size:23 final size:22
Alignment explanation
Indices: 2561--2603 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
2551 TTTGTGGGAA
* *
2561 AAAAATAGAAAGCAGAAAAGAAT
1 AAAAATAAAAAG-ACAAAAGAAT
2584 AAAAATAAAAAGACAAAAGA
1 AAAAATAAAAAGACAAAAGA
2604 TTTGGAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (22 bp):
AAAAATAAAAAGACAAAAGAAT
Found at i:2764 original size:18 final size:18
Alignment explanation
Indices: 2743--2787 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
2733 TACAAAGTAG
2743 AAAAAAAATAAGAAAATA
1 AAAAAAAATAAGAAAATA
* * *
2761 AAAAAGATTCAGAAAATA
1 AAAAAAAATAAGAAAATA
2779 AAAAAAAAT
1 AAAAAAAAT
2788 TTAGAACTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (18 bp):
AAAAAAAATAAGAAAATA
Found at i:2852 original size:25 final size:24
Alignment explanation
Indices: 2810--2899 Score: 60
Period size: 24 Copynumber: 3.6 Consensus size: 24
2800 AAAAAATTTT
* *
2810 AAAATATAAATAAAAGAATAAATG
1 AAAAAATAAATAAAAGAAAAAATG
* *
2834 AAAAAATAAATTAAGAGAAAAAATTA
1 AAAAAATAAA-TAAAAGAAAAAA-TG
2860 AATAAAATACCAA-AAAAGGAAAAAAT-
1 AA-AAAATA--AATAAAA-GAAAAAATG
*
2886 -AAAAATAAACAAAA
1 AAAAAATAAATAAAA
2900 ACAAAAAGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
22 2 0.04
23 4 0.07
24 15 0.28
25 11 0.20
26 3 0.06
27 10 0.19
28 7 0.13
29 2 0.04
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (24 bp):
AAAAAATAAATAAAAGAAAAAATG
Found at i:3186 original size:18 final size:18
Alignment explanation
Indices: 3159--3198 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
3149 TTAAAATTAT
*
3159 AAAGAAGAAATAAA-AAA
1 AAAGAAGAAAAAAATAAA
3176 AAAGCAAGAAAAAAATAAA
1 AAAG-AAGAAAAAAATAAA
3195 AAAG
1 AAAG
3199 GAAAATACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 9 0.45
19 7 0.35
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAGAAGAAAAAAATAAA
Found at i:3295 original size:28 final size:27
Alignment explanation
Indices: 3243--3295 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
3233 TAAATTTTGA
*
3243 CAAAAAAATGAAGAAAAAATGAAGAGG
1 CAAAAAAATGAAGAAAAAATAAAGAGG
*
3270 CAAAAATATGAAAGAAAAGAA-AAAGA
1 CAAAAAAATG-AAGAAAA-AATAAAGA
3296 AAAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 9 0.41
28 11 0.50
29 2 0.09
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.08
Consensus pattern (27 bp):
CAAAAAAATGAAGAAAAAATAAAGAGG
Found at i:3986 original size:8 final size:8
Alignment explanation
Indices: 3955--3998 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
3945 AAAAGTTATT
*
3955 AAAAAATT
1 AAAAAATA
* *
3963 ACAAAGTA
1 AAAAAATA
3971 AAAAAATA
1 AAAAAATA
*
3979 AGAAAATA
1 AAAAAATA
3987 AAAAAATA
1 AAAAAATA
3995 AAAA
1 AAAA
3999 CAAAAAATTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.14
Consensus pattern (8 bp):
AAAAAATA
Found at i:4092 original size:8 final size:7
Alignment explanation
Indices: 4079--4167 Score: 56
Period size: 8 Copynumber: 11.7 Consensus size: 7
4069 GAAAAAAGGG
4079 AAAAATA
1 AAAAATA
4086 AATAAATA
1 AA-AAATA
*
4094 AATAAAGAA
1 AA-AAA-TA
4103 AAAAGATA
1 AAAA-ATA
*
4111 AAAAGCACA
1 AAAA--ATA
4120 AAAAA-A
1 AAAAATA
4126 AATAAATA
1 AA-AAATA
*
4134 AACAATA
1 AAAAATA
4141 AAAAATA
1 AAAAATA
4148 AAAAAGTA
1 AAAAA-TA
4156 AGAAAA-A
1 A-AAAATA
4163 AAAAA
1 AAAAA
4168 GGTCAAAAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 17
0.75 0.07 0.19
Matches are distributed among these distances:
6 7 0.10
7 23 0.34
8 24 0.35
9 14 0.21
ACGTcount: A:0.80, C:0.03, G:0.06, T:0.11
Consensus pattern (7 bp):
AAAAATA
Found at i:4138 original size:18 final size:18
Alignment explanation
Indices: 4089--4149 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
4079 AAAAATAAAT
*
4089 AAATAAATAAA-GAAAAA
1 AAATAAATAAACAAAAAA
*
4106 AGATAAA-AAGCACAAAAAA
1 AAATAAATAA--ACAAAAAA
*
4125 AAATAAATAAACAATAAA
1 AAATAAATAAACAAAAAA
4143 AAATAAA
1 AAATAAA
4150 AAAGTAAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 2 0.06
17 6 0.17
18 15 0.42
19 11 0.31
20 2 0.06
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.11
Consensus pattern (18 bp):
AAATAAATAAACAAAAAA
Found at i:4161 original size:18 final size:17
Alignment explanation
Indices: 4089--4167 Score: 54
Period size: 18 Copynumber: 4.5 Consensus size: 17
4079 AAAAATAAAT
*
4089 AAATAAATAAAGAA-AAA
1 AAATAAA-AAACAAGAAA
* *
4106 AGATAAAAAGCACAAAAAA
1 AAATAAAAA--ACAAGAAA
*
4125 AAATAAATAAACAATAAA
1 AAATAAA-AAACAAGAAA
*
4143 AAATAAAAAAGTAAGAAA
1 AAATAAAAAA-CAAGAAA
4161 AAA-AAAA
1 AAATAAAA
4168 GGTCAAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
16 2 0.04
17 13 0.25
18 25 0.49
19 9 0.18
20 2 0.04
ACGTcount: A:0.80, C:0.04, G:0.06, T:0.10
Consensus pattern (17 bp):
AAATAAAAAACAAGAAA
Found at i:4185 original size:585 final size:568
Alignment explanation
Indices: 3578--4617 Score: 1610
Period size: 575 Copynumber: 1.8 Consensus size: 568
3568 CAAAAAATAT
* * **
3578 AAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGAC-AAAATGAAAAAAAAAT
1 AAAAAGGACAAAAATTGAATAAAAATTTCAAAAAGGAAATAGAATGACAAAAACAAAAAAAAAAT
*
3642 AGTTTAAAAAATACAAAAAATTGAAAAACATAT-AAGACCTAACAATATAAAAAGTCGGACAAAA
66 AGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTAACAATATAAAAAGTCAGACAAAA
*
3706 AATT-AAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATGAGAATTTAAAAACGCAAATAAG
131 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACACAAATAAG
*
3769 AAACGAAAGGAAATTTATAGG-AAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGACAAA
196 AAACGAAAGGAAATTTATAGGAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGAAAAA
3833 AGATTTGCAATAAAAAATAAAAAATAAAATATTTAAAATAACGAAGAAATTAAAACAAGTAAAAA
261 AGATTTGCAAT-AAAAA-AAAAAA-AAAATA---AAAAT---------ATTAAAACAAGTAAAAA
3898 TGAAAGCATACGAAAAAAAAG-AAAGAAGAAAG-AAAATTGTGAAGGGAAAAAGTTATTAAAAAA
311 TGAAAGCATACG-AAAAAAAGCAAA-AAGAAAGAAAAATTGTGAAGGGAAAAAGTTATT-AAAAA
3961 TTACAAAGTA-AAAAAATAAGAAAATAAAAAAATAAAAACAAAAAATTTTGAACTTTATAAAAAT
373 TTACAAAGTAGAAAAAA-AAGAAAAT-AAAAAAT---AA-AAAAAATTTTGAACTTTATAAAAAT
4025 GTTTTAAAATATAAATAAAAAATAATGAAAATTATATAAAATACGAAAAAAGGGAAAAATAAATA
432 -TTTTAAAATATAAATAAAAAATAATGAAAATTATATAAAATACGAAAAAAGGGAAAAATAAATA
4090 AATAAATAAAGAAAAAAGATAAAAAGCACAAAAAAAAATAAATAAACAATAAAAAATAAAAAAGT
496 AATAAATAAAGAAAAAAGATAAAAAGCACAAAAAAAAATAAATAAACAATAAAAAATAAAAAAGT
4155 AAGAAAAA
561 AAGAAAAA
*
4163 AAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAATAGAATGACAAAAACAAAAAAAAAAT
1 AAAAAGGACAAAAATTGAATAAAAATTTCAAAAAGGAAATAGAATGACAAAAACAAAAAAAAAAT
*
4228 AGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTAACAATATAAATAGTCAGACAAAA
66 AGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTAACAATATAAAAAGTCAGACAAAA
*
4293 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACATAAATAAG
131 AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACACAAATAAG
* * *
4358 AAATGAAAGGAAATTTGTAGGAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATTAAAAGAAAAA
196 AAACGAAAGGAAATTTATAGGAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGAAAAA
* * * * * * *
4423 AGATTTGGAATAAAAAACAGAAAAACTAAAAATTTTAAAACAATTAAAAATGAAAGCATATGAAA
261 AGATTTGCAATAAAAAAAAAAAAAAATAAAAATATTAAAACAAGTAAAAATGAAAGCATACGAAA
*
4488 AAAAGCAAAAAGAAGGAAAAATTGTGAAGGGAAAAAGTTATTAAAAATTACAAAGTAGAAAAAAA
326 AAAAGCAAAAAGAAAGAAAAATTGTGAAGGGAAAAAGTTATTAAAAATTACAAAGTAGAAAAAAA
4553 AGAAAATAAAAAATAAAAAAAATTTTGAACTTTATAAAAATTTTTAAAATATAAATAAAAAATAA
391 AGAAAATAAAAAATAAAAAAAATTTTGAACTTTATAAAAATTTTTAAAATATAAATAAAAAATAA
4618 ATTAGGGGAA
Statistics
Matches: 426, Mismatches: 21, Indels: 33
0.89 0.04 0.07
Matches are distributed among these distances:
568 24 0.06
569 25 0.06
570 2 0.00
573 7 0.02
574 37 0.09
575 60 0.14
584 5 0.01
585 45 0.11
586 47 0.11
587 38 0.09
588 29 0.07
589 56 0.13
590 51 0.12
ACGTcount: A:0.66, C:0.05, G:0.11, T:0.18
Consensus pattern (568 bp):
AAAAAGGACAAAAATTGAATAAAAATTTCAAAAAGGAAATAGAATGACAAAAACAAAAAAAAAAT
AGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTAACAATATAAAAAGTCAGACAAAA
AATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACACAAATAAG
AAACGAAAGGAAATTTATAGGAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGAAAAA
AGATTTGCAATAAAAAAAAAAAAAAATAAAAATATTAAAACAAGTAAAAATGAAAGCATACGAAA
AAAAGCAAAAAGAAAGAAAAATTGTGAAGGGAAAAAGTTATTAAAAATTACAAAGTAGAAAAAAA
AGAAAATAAAAAATAAAAAAAATTTTGAACTTTATAAAAATTTTTAAAATATAAATAAAAAATAA
TGAAAATTATATAAAATACGAAAAAAGGGAAAAATAAATAAATAAATAAAGAAAAAAGATAAAAA
GCACAAAAAAAAATAAATAAACAATAAAAAATAAAAAAGTAAGAAAAA
Found at i:5239 original size:12 final size:11
Alignment explanation
Indices: 5222--5269 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
5212 ATGAAACTAT
5222 AAATAAAGAAAA
1 AAATAAA-AAAA
5234 AAATAAAAAAA
1 AAATAAAAAAA
5245 AAA-AAAAAATA
1 AAATAAAAAA-A
**
5256 AAGCAAAAAAA
1 AAATAAAAAAA
5267 AAA
1 AAA
5270 AGTAAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 6 0.19
11 13 0.41
12 13 0.41
ACGTcount: A:0.88, C:0.02, G:0.04, T:0.06
Consensus pattern (11 bp):
AAATAAAAAAA
Found at i:5249 original size:16 final size:16
Alignment explanation
Indices: 5220--5286 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 16
5210 TTATGAAACT
* *
5220 ATAAATAAAGAAAAAA
1 ATAAAAAAAAAAAAAA
5236 ATAAAAAAAAAAAAAAA
1 AT-AAAAAAAAAAAAAA
5253 ATAAAGCAAAAAAAAAAA
1 ATAAA--AAAAAAAAAAA
* *
5271 GTAAGAAAATAAAAAA
1 ATAA-AAAAAAAAAAA
5287 GGACAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
16 5 0.12
17 23 0.53
18 14 0.33
19 1 0.02
ACGTcount: A:0.84, C:0.01, G:0.06, T:0.09
Consensus pattern (16 bp):
ATAAAAAAAAAAAAAA
Found at i:5252 original size:17 final size:17
Alignment explanation
Indices: 5230--5286 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
5220 ATAAATAAAG
5230 AAAAAAATAAAAAAAAA
1 AAAAAAATAAAAAAAAA
*
5247 AAAAAAATAAAGCAAAAA
1 AAAAAAATAAA-AAAAAA
*
5265 AAAAAAGTAAGAAAATAAA
1 AAAAAAATAA-AAAA-AAA
5284 AAA
1 AAA
5287 GGACAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 11 0.32
18 16 0.47
19 7 0.21
ACGTcount: A:0.86, C:0.02, G:0.05, T:0.07
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAA
Found at i:5279 original size:29 final size:30
Alignment explanation
Indices: 5220--5296 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 30
5210 TTATGAAACT
5220 ATAAATAAAGAAAAAAATAAAAAAAAAAAA
1 ATAAATAAAGAAAAAAATAAAAAAAAAAAA
** *
5250 A-AAATAAAGCAAAAAAA-AAAAGTAAGAAA
1 ATAAATAAAG-AAAAAAATAAAAAAAAAAAA
*
5279 ATAAA-AAAGGACAAAAAT
1 ATAAATAAA-GAAAAAAAT
5297 TGAATAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
29 27 0.69
30 12 0.31
ACGTcount: A:0.81, C:0.03, G:0.08, T:0.09
Consensus pattern (30 bp):
ATAAATAAAGAAAAAAATAAAAAAAAAAAA
Found at i:5295 original size:16 final size:15
Alignment explanation
Indices: 5220--5296 Score: 54
Period size: 16 Copynumber: 5.1 Consensus size: 15
5210 TTATGAAACT
*
5220 ATAAATAAAGAAAAAA
1 ATAAA-AAAGGAAAAA
5236 ATAAAAAA--AAAAA
1 ATAAAAAAGGAAAAA
* *
5249 A-AAAATAAAGCAAAA
1 ATAAAA-AAGGAAAAA
*
5264 A-AAAAAAGTAAGAAA
1 ATAAAAAAGGAA-AAA
5279 ATAAAAAAGGACAAAA
1 ATAAAAAAGGA-AAAA
5295 AT
1 AT
5297 TGAATAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
12 4 0.08
13 8 0.16
14 3 0.06
15 16 0.32
16 18 0.36
17 1 0.02
ACGTcount: A:0.81, C:0.03, G:0.08, T:0.09
Consensus pattern (15 bp):
ATAAAAAAGGAAAAA
Found at i:5598 original size:17 final size:17
Alignment explanation
Indices: 5566--5597 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5556 ATAAAAATTT
5566 TAAAAACAACGAAAAAG
1 TAAAAACAACGAAAAAG
5583 TAAAAACAA-GAAAAA
1 TAAAAACAACGAAAAA
5598 ATGAAAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (17 bp):
TAAAAACAACGAAAAAG
Found at i:6012 original size:23 final size:22
Alignment explanation
Indices: 5963--6012 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
5953 TATGAAAGAT
* * *
5963 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
5985 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
6008 GAAAA
1 GAAAA
6013 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:6176 original size:18 final size:19
Alignment explanation
Indices: 6145--6182 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
6135 AAATTTTGAA
*
6145 AAAAAATGAGAAAAAGAAG
1 AAAAAATGAAAAAAAGAAG
*
6164 AAAAAAT-AAAAAATGAAG
1 AAAAAATGAAAAAAAGAAG
6182 A
1 A
6183 GGCAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAAAATGAAAAAAAGAAG
Found at i:6907 original size:17 final size:18
Alignment explanation
Indices: 6887--6930 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6877 CAAAGTAGAA
6887 AAAAAAAATAAG-AAAAT
1 AAAAAAAATAAGAAAAAT
* **
6904 AAAAAAGATTCGAAAAAT
1 AAAAAAAATAAGAAAAAT
6922 AAAAAAAAT
1 AAAAAAAAT
6931 TGAACTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (18 bp):
AAAAAAAATAAGAAAAAT
Found at i:7712 original size:18 final size:16
Alignment explanation
Indices: 7677--7766 Score: 85
Period size: 18 Copynumber: 5.3 Consensus size: 16
7667 GCAAGAAAAT
*
7677 AAAAAAT-AAAAGAGA
1 AAAAAATAAAAAAAGA
7692 AAAAAATGAAAGAAAAGA
1 AAAAAAT-AAA-AAAAGA
7710 AAAAAGATAAATAAAAGCA
1 AAAAA-ATAAA-AAAAG-A
7729 CAAAAAA-AAAAAAAGTA
1 -AAAAAATAAAAAAAG-A
*
7746 AAAAAATAAAAAAGGA
1 AAAAAATAAAAAAAGA
7762 AAAAA
1 AAAAA
7767 TTGAATAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
15 7 0.11
16 12 0.19
17 15 0.23
18 21 0.33
19 4 0.06
20 5 0.08
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (16 bp):
AAAAAATAAAAAAAGA
Found at i:7714 original size:27 final size:26
Alignment explanation
Indices: 7684--7766 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 26
7674 AATAAAAAAT
7684 AAAAGAGAAAAAAATGAAAGAAAAGAA
1 AAAAGAGAAAAAAATGAAA-AAAAGAA
*
7711 AAAAGATAAATAAAA-GCACAAAAAA-AA
1 AAAAGAGAAA-AAAATG-A-AAAAAAGAA
*
7738 AAAA-AGTAAAAAAAT-AAAAAAGGAA
1 AAAAGAG-AAAAAAATGAAAAAAAGAA
7763 AAAA
1 AAAA
7767 TTGAATAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
24 5 0.11
25 7 0.15
26 5 0.11
27 19 0.40
28 9 0.19
29 2 0.04
ACGTcount: A:0.80, C:0.02, G:0.12, T:0.06
Consensus pattern (26 bp):
AAAAGAGAAAAAAATGAAAAAAAGAA
Found at i:7741 original size:8 final size:8
Alignment explanation
Indices: 7672--7758 Score: 54
Period size: 9 Copynumber: 10.4 Consensus size: 8
7662 ACAAAGCAAG
7672 AAAAT-AA
1 AAAATAAA
7679 AAAAT-AA
1 AAAATAAA
* *
7686 AAGAGAAA
1 AAAATAAA
7694 AAAATGAAA
1 AAAAT-AAA
*
7703 GAAAAGAAA
1 -AAAATAAA
7712 AAAGATAAA
1 AAA-ATAAA
*
7721 TAAAAGCACAA
1 -AAAA-TA-AA
7732 AAAA-AAA
1 AAAATAAA
7739 AAAAGTAAA
1 AAAA-TAAA
7748 AAAATAAA
1 AAAATAAA
7756 AAA
1 AAA
7759 GGAAAAAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
7 16 0.25
8 16 0.25
9 18 0.28
10 12 0.19
11 2 0.03
ACGTcount: A:0.80, C:0.02, G:0.09, T:0.08
Consensus pattern (8 bp):
AAAATAAA
Found at i:8169 original size:11 final size:11
Alignment explanation
Indices: 8155--8180 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8145 AAAAAATAAG
8155 AAAATAAAAAC
1 AAAATAAAAAC
8166 AAAATAAAAAC
1 AAAATAAAAAC
8177 AAAA
1 AAAA
8181 AATTTTGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAATAAAAAC
Found at i:8492 original size:23 final size:22
Alignment explanation
Indices: 8443--8492 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
8433 TATGAAAGAT
* * *
8443 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
8465 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
8488 GAAAA
1 GAAAA
8493 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:8657 original size:19 final size:20
Alignment explanation
Indices: 8624--8686 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
8614 TAAATTTTGA
*
8624 AAAAAAATGAGAAAAAGAAG
1 AAAAAAATGAAAAAAAGAAG
*
8644 AAAAAAAT-AAAAAATGAAG
1 AAAAAAATGAAAAAAAGAAG
8663 AGGCAAAAATATGAAAGAAAAGAA
1 A---AAAAA-ATGAAA-AAAAGAA
8687 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 10 0.29
20 8 0.24
22 5 0.15
23 2 0.06
24 3 0.09
25 6 0.18
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (20 bp):
AAAAAAATGAAAAAAAGAAG
Found at i:8967 original size:17 final size:17
Alignment explanation
Indices: 8892--8968 Score: 61
Period size: 17 Copynumber: 4.5 Consensus size: 17
8882 TTATGAAACT
*
8892 ATAAACAAAGAAAGAAA
1 ATAAAAAAAGAAAGAAA
*
8909 ATAAAAAAA-AAATAAAA
1 ATAAAAAAAGAAA-GAAA
*
8926 ATAAATAAAGCACAA-AAA
1 ATAAAAAAAG-A-AAGAAA
*
8944 A-ACAAAAAAGTAAGAAA
1 ATA-AAAAAAGAAAGAAA
8961 ATAAAAAA
1 ATAAAAAA
8969 GGGCAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
16 5 0.10
17 29 0.60
18 11 0.23
19 1 0.02
20 2 0.04
ACGTcount: A:0.79, C:0.05, G:0.06, T:0.09
Consensus pattern (17 bp):
ATAAAAAAAGAAAGAAA
Found at i:9365 original size:17 final size:18
Alignment explanation
Indices: 9345--9388 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
9335 TACAAAGTAG
9345 AAAAAAAATAAG-AAAAT
1 AAAAAAAATAAGAAAAAT
* **
9362 AAAAAAGATTCGAAAAAT
1 AAAAAAAATAAGAAAAAT
9380 AAAAAAAAT
1 AAAAAAAAT
9389 TGAACTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (18 bp):
AAAAAAAATAAGAAAAAT
Found at i:9877 original size:19 final size:20
Alignment explanation
Indices: 9844--9906 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
9834 AAATTTTGAC
*
9844 AAAAAAATGAGAAAAAGAAG
1 AAAAAAATGAAAAAAAGAAG
*
9864 AAAAAAAT-AAAAAATGAAG
1 AAAAAAATGAAAAAAAGAAG
9883 AGGCAAAAATATGAAAGAAAAGAA
1 A---AAAAA-ATGAAA-AAAAGAA
9907 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 10 0.29
20 8 0.24
22 5 0.15
23 2 0.06
24 3 0.09
25 6 0.18
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (20 bp):
AAAAAAATGAAAAAAAGAAG
Found at i:10745 original size:52 final size:51
Alignment explanation
Indices: 10647--10746 Score: 114
Period size: 51 Copynumber: 1.9 Consensus size: 51
10637 AAAATGTTTT
* * * *
10647 AAAATATAAATAAAAAATAAATGAAAAATTATATAAAATACGAAAAAAGGG
1 AAAATATAAATAAAAAATAAATGAAAAAATAAATAAAACACAAAAAAAGGG
*
10698 AAAA-ATAAATAAATAAATAAA-GAAAAAAGATAAATAAAGCACAAAAAAA
1 AAAATATAAATAAA-AAATAAATG-AAAAA-ATAAATAAAACACAAAAAAA
10747 ATAAAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
50 10 0.24
51 16 0.39
52 15 0.37
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (51 bp):
AAAATATAAATAAAAAATAAATGAAAAAATAAATAAAACACAAAAAAAGGG
Found at i:10752 original size:29 final size:29
Alignment explanation
Indices: 10697--10784 Score: 78
Period size: 29 Copynumber: 3.0 Consensus size: 29
10687 CGAAAAAAGG
*
10697 GAAA-AATAAATA-AATAAATAAAGAAAAAA
1 GAAACAATAAA-ACAATAAA-AAATAAAAAA
*
10726 GATA-AATAAAGCACAA-AAAAAATAAAAAA
1 GAAACAATAAA--ACAATAAAAAATAAAAAA
10755 -AAACAATAAAACAATAAAAAATATAAAAA
1 GAAACAATAAAACAATAAAAAATA-AAAAA
10784 G
1 G
10785 TAAGAAAACA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 4 0.08
28 10 0.20
29 29 0.59
30 4 0.08
31 2 0.04
ACGTcount: A:0.77, C:0.05, G:0.06, T:0.12
Consensus pattern (29 bp):
GAAACAATAAAACAATAAAAAATAAAAAA
Found at i:10754 original size:8 final size:8
Alignment explanation
Indices: 10698--10783 Score: 50
Period size: 8 Copynumber: 10.4 Consensus size: 8
10688 GAAAAAAGGG
10698 AAAAATAA
1 AAAAATAA
*
10706 ATAAATAA
1 AAAAATAA
* *
10714 ATAAAGAA
1 AAAAATAA
10722 AAAAGATAA
1 AAAA-ATAA
*
10731 ATAAAGCACAA
1 A-AAA--ATAA
*
10742 AAAAA-AT
1 AAAAATAA
10749 AAAAA-AA
1 AAAAATAA
*
10756 AACAATAA
1 AAAAATAA
*
10764 AACAATAA
1 AAAAATAA
10772 AAAATATAA
1 AAAA-ATAA
10781 AAA
1 AAA
10784 GTAAGAAAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
7 11 0.17
8 31 0.49
9 11 0.17
10 6 0.10
11 4 0.06
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:10827 original size:603 final size:593
Alignment explanation
Indices: 7730--27893 Score: 4021
Period size: 591 Copynumber: 33.2 Consensus size: 593
7720 ATAAAAGCAC
* * * *
7730 AAAAAA-AAAAAAAGTAAAAAAATAAAAAAGG-AAAAAATTGAATAAAAA-TTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
7792 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
7857 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTAT
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTAT
* *
7922 GAGAATTTAAAAACGCAAATAAGAAACGAAAGGAAATTTATAGGAAAAAAAAGAAAAGCAAGAAA
194 GAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAA
* * *
7987 AGAATAAAAATGAAAAGACAAAAGATTTGCAATAAAAAATAGAAAAATAAAAATTTTAAAA-ACG
259 AGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAAT-AAAATATTAAAATAAG
*
8051 AAGAAA-T-AAACAAGT-AAAATGAAAGCATACGAAAAAAAAAGCAAA-AAGAAAG-AAATTGTG
323 AA-AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAG-AAAGAAGAAAGAAAATTGTG
8111 AAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAACAAAATAAAAA
386 AAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAAT--AAA-AAAATAAAAA
* * *
8176 CAAAAAATTTTGAACTTTATAAAAAT-TTCCTGAAATATAAATAAAAAATAAATG--AAA-AGAT
448 -AAAAAATTTTGAACTTTATAAAAATGTT-TTAAAATATAAATAAAAAATAAATGAAAAATATAT
* * * * * * * *
8237 AAATTAAGGAAAAA-AATAAAAATTAACAAAAAGAAAAAAG-T-AACAAAG---TAAGAAAATAA
511 AAAAT-AGAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAA
*** *
8296 AAAATTAGGGAATCAAAAAAAT
575 AAAA--AAACAAT-AAAACAAT
* * * * * ** * * * ** *
8318 ATCAAAAGACAAAATG-AATAAAA-ATTTGAAA--T-ATAAAATGGAA-AAAACTTT--TAGTTT
1 A-AAAAATATAAAAAGTAAGAAAACA--AAAAAGGTCA-AAAATTGAATAAAAATTTCAAAAATG
* * ** * * * * * *
8375 AGAATGTACA--AAAAAAACAAAAAAAAAAATATAACAAATAGAGGACAAAGA-T-ATAAA-ATA
62 A-AATGGA-ATGACAAAATGAAAAAAAATAGTTTAAAAAATACA--A-AAA-ATTGAAAAACATA
* * * * * * * **
8435 TGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAGGAAAATGCA
121 T--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTTAATGCA
* * ** **** * * ** * **
8497 CAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA-AAAAAGTGCGAACAAAA
179 -AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTG-TAGGAAAA
* * * * ** * ** *
8559 AGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACATAAAAT-AAATTTTG
242 A-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAG
** * * * * * * *
8623 -AAAA-AAAATGAGAAAAAGAAGAAAAAAATAAAA-AA-TGAAGAGGCAAA-AATATG-AAAGAA
301 AAAAATAAAAT-ATTAAAATAAG-AAAAATTAAAACAAGTAAAAATG-AAAGCATATGAAAAAAA
** *
8682 AAGAAA-AAGAAA-AAAATT-T-ATA--G-AAAA-TT-TTAAAACAAAGGAAAAAGT-GAAGAAA
363 AAGAAAGAAGAAAGAAAATTGTGA-AGGGAAAAAGTTATT-AAA-AAATTACAAAGTAGAA-AAA
* * * * *** * *
8737 AATAAATGAAAGCACATAGAAAA-AAGAAGAAAAA-TTTGAA-AGGAGAAAAA-GTTAATGAAAA
424 AAT-AA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--TTAAAA
* *
8798 TTATAAA-AATGCAATAGA-AAAT-AACCAAGA-ATGATAAAAGA-AAAAAAGATAGAAAAATAA
482 -TATAAATAA---AA-A-ATAAATGAA--AA-ATAT-ATAAAATAGAAAAAAGA-AAAAAAAT-A
* * * *
8858 AAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAAAAATA
535 AAAA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA-AAAAT---AAAAAAA-A
*
8923 AAAATAAATAAAGCACA-
581 ACAAT--A-AAA-CA-AT
* * *
8940 AAAAAACA-AAAAAGTAAGAAAATAAAAAAGGGCAAAAATTGAATAAAAATTTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
9004 GGAATGAC-AAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
66 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
*
9068 CAATAT-AAAAGTCGGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATG
131 CAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATG
* * *
9132 AGAATTTAAAAGCGCAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAATAGAATAGCAAGAAA
195 AGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAA-AGAAAAGCAAGAAA
* * * * *
9197 AGAATAAAAATAAAAAGACAAAAGATTTG-------GAAT--AAAAA-ACAA-A--ACAACAA-A
259 AGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATATTAAAATAAGA
* * *
9248 AAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAAGCAAGAAGAAGGAAATTTGTGAA
324 AAAATTAAAACAAGTAAAAATGAAAGCATATG-AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAA
9313 GGGAAAAAGTTATTAAAAAAATTACAAAGTAGAAAAAAAATAAGAAAATAAAAAAGATTCGAAAA
388 GGGAAAAAGTTATT-AAAAAATTACAAAGTAG-AAAAAAATAAGAAAATAAAAAA-A-T--AAAA
** * * *
9378 ATAAAAAAAATTGAACTTTATAAAAATTTTTTAGAATATAAATAAAAAATAACTGAAAAA-ATA-
447 A-AAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATATAT
* * * * * * *
9441 AATTAAGAGAAAAAATTAAATAAAATACCAAAAAAGGAAAAAATAAAAATAAA-CA-AAAAAAAA
511 AA--AATAGAAAAAA-GAAAAAAAATA-AAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAA
9504 GTAACAAAGTAAGAA-AATAAAA-AATT
572 -TAA-AAA--AA-AACAATAAAACAA-T
**** * * * **
9530 CGCGAATCAAAAAAATATAATG-AAACAAAATGAA--T-AAAAATTTCAAATATAAAA-TGGAAA
1 AAAAAAT-ATAAAAA-GTAA-GAAAACAAAA--AAGGTCAAAAA-TT-GAATA-AAAATTTCAAA
* ** * * ** * *
9590 AATCTTTTAGTTTAGAATGTACAAAA--AAAAAAAATAG--CAAAGAGAGGAC-AAAGA-T-ATA
58 AA----TGA-AATGGAATG-ACAAAATGAAAAAAAATAGTTTAAA-A-AATACAAAAAATTGAAA
* * * * * * *
9648 AA-ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAAG-A
115 AACATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTT
* * * ** **** * * ** **
9708 AAGTG-ACAAA-AAGAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAATAAAAAAAAAAGTGTG
173 AA-TGCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGT-
** * * * * ** *
9771 AACAAAAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACATAAAAT-A
235 AGGAAAAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAA
** * * ** * * * * * *
9835 AATTTTGACAAA-AAAATGAGAAAAAGAAGAAAAAAATAAAA-AA-TGAAGAGGCAAA-AATATG
294 AAAATAGAAAAATAAAAT-ATTAAAATAAG-AAAAATTAAAACAAGTAAAAATG-AAAGCATATG
* * * ** *
9896 -AAAGAAAAGAAA-AAGAAA-AAAATT-T--ATGG--AAACTT-TTAAAACAAAGGAAAAAGT-G
356 AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AAA-AAATTACAAAGTAG
* * * * * *****
9951 AACAAAAAAAAATGAAAGCACATAAAAA-AAGAATAAAAA-TTTGAA-AGGGGAAAAA-GTTAAT
419 -A-AAAAAATAA-GAAA--ATAAAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--T
* * *
10012 GAAAAATTATAAA-AATGCAATAGA-AAAT-AACCAAGA-ATGATAAAAGA-AAAAAAGATAGAA
477 -TAAAA-TATAAATAA---AA-A-ATAAATGAA--AA-ATAT-ATAAAATAGAAAAAAGA-AAAA
* * * *
10072 AAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAA
530 AAAT-AAAAA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA-AAAATAAAAAA
*
10137 TAAA-AATAGAAAAAGATAAAT
579 -AAACAAT----AAA-A-CAAT
* * * * * *
10158 AAAGCACAAAAAAAAAAAATACAACAAAAAATATAAAAAGGACAAAAATTGAATAAAAATTTCAA
1 -AA--A-AAATATAAAAAGT---A-AGAAAACA-AAAAAGGTCAAAAATTGAATAAAAATTTCAA
10223 AAATGAAATGGAATGACAAAATGAAAAAAAATAGTTTAAAAAATAC-AAAAATTGAAAAACATAT
57 AAATGAAATGGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATAT
10287 AAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAA
122 AAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAA
* *
10352 AAAGTATGAGAATTTAAAAACGCAAATAAGAAACGAAAGGAAATTTATAGGAAAAAAAAGAAAAG
187 AAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAG
*
10417 CAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGCAATAAAAAATAGAAAAATAAAATATTTA
252 CAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATA-TTA
*
10482 AAATAACGAAGAAATTAAAACAAGTAAAAATGAAAGCATACGAAAAAAAAAGAAAGAAGAAAGAA
316 AAATAA-GAA-AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAA
10547 AATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATA
379 AATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATA
10612 AAAACAAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATT
444 AAAA-AAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAA-T
10677 ATATAAAATACGAAAAAAGGGAAAAATAAATAAATAAATAAAGAAAAAAGATAAATAAAGCACAA
507 ATATAAAATA-GAAAAAA--GAAAAA-AAATAAA-AAA-AAAGAAAAAAGATAAATAAAGCACAA
10742 AAAAAATAAAAAAAAACAATAAAACAAT
566 AAAAAATAAAAAAAAACAATAAAACAAT
*
10770 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
* *
10835 AGAATGACAAAA-AAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTA
66 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATAT-AAGACCTA
*
10899 ACAATATAAATAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTAT
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTAT
**
10964 GAGAATTTAAAAACATAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAAGAAAAGCAAGAA
194 GAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGG-AAAAAAAAGAAAAGCAAGAA
* * * *
11029 AAGAATAAAAATTAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAACTAAAA-A-T----T--
258 AAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAA-TAAAATATTAAAATAA
* *
11086 ------TTAAAACAATTAAAAATGAAAGCATATG--AAAAAAAGCAAA-AAGAAGGAAAATTGTG
322 GAAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAG-AAAGAAGAAAGAAAATTGTG
11142 AAGGGAAAAAGTTATTAAAAAATTACAAAGTAG--------AAGAAAATAAAAAAAT--AAAAAA
386 AAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAAAAA
11197 AAATTTTGAACTTTATAAAAAT-TTTTAAAATATAAATAAAAAATAAATTAGGGGAAAAA-ATA-
451 AAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAA-T----GAAAAATATAT
* ** *
11259 AAAA-A-AACGAAAAGAAAAAAAGTAACAAAGTAAGAAAATAA-A-AAAT-TAGCGAATCAAAAA
511 AAAATAGAA--AAAAGAAAAAAAATAA-AAAAAAAGAAAA-AAGATAAATAAAGC--A-CAAAAA
* *
11319 AATATAAAAAGACAA-AATGAATAAAAAT
569 AA-ATAAAAA-AAAACAAT-AA-AACAAT
* * ** * * *
11347 GAAAAAACCTTTTAGTTTAGAATGTACAAAGAAAAACAAAAAAAAAATATAACAAATAGAGGACA
1 -AAAAAA-----TA---TAAAAAGT---AAG-AAAAC--AAAAAAGGT-CAA-AAATTGA--ATA
* * * *
11412 AAGATAT-AAAATATGAAA--G-ATGA-AAAAT-AAAATAAA-AGTTAATAAAAAATATAAATAA
47 AAAATTTCAAAA-ATGAAATGGAATGACAAAATGAAAAAAAATAGTT--TAAAAAATACAAA-AA
* ** * * * **
11470 A---AATAAA-AGA-AAGTGC--ACAA-AAAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAA
108 ATTGAA-AAACATATAAGACCTAACAATATAAA-AAG--TCA-G----ACAA--A-AAATTA-AA
* * *** * * * * * * *
11527 ATAAAAAAAAAGTGTGAACAAAAAGATTTAACAAAAAGCAAGAAAAAAAATAAAAAAGGAAAATA
160 A-AAGAGAAAAGT-T-AATGCAAA-A--TAA-AAAAAGTATG---AGAATTTAAAAACGCAAATA
* ** *
11592 CA-AAATACATAAAATAAATTT-T-GAGAAAAAAATGAGAAAAAG-AAGAAAAAAATAAAAAGTG
215 -AGAAAT---GAAAGGAAATTTGTAG-GAAAAAAA--AG-AAAAGCAAGAAAAGAATAAAAA-TG
* * * * **
11653 AAGAGGCAAAA-ATATGAAAGAAAAGAA-A-AAGAAA-AAAAT-TT---AT-AGAATATTTTAAA
271 AAAAGACAAAAGATTTGAAATAAAA-AATAGAA-AAATAAAATATTAAAATAAGAA-AAATTAAA
* ** * *
11709 ACAAAGGAAAAAGTGAACAAAAAAACATGAAACCACATAAA-AAA-AAG-AAGAAAAATT-TGAA
333 AC-AAGTAAAAA-TG----AAAGCATATGAAA--A-AAAAAGAAAGAAGAAAG-AAAATTGTG-A
* * * * * *
11770 AGGAGAAAAAGCTAATGAAAAATTGTAAAAATGCAATAGAAAATAACTGAGAATGATAAAAGAAA
387 AGG-GAAAAAG-TTATTAAAAAAT-TACAAA-G---TAGAAAA-AA---ATAA-G--AAAA-TAA
*** * * *
11835 AAAAGATAGAAAAAGAAAAAATTCCAAAACTTTATAAAAAT-TTATGAAACTATAAACAAAGCAA
437 AAAA-AT--AAAAA-AAAAAATT-TTGAACTTTATAAAAATGTT-TTAAAATATAAATAAA--AA
* **
11899 GA-AAAT--AAAA-A-ATAAAAT---AAAAAGAGAAAAAATGAAAGCAAAAGAAAAAAGATAAAT
494 -ATAAATGAAAAATATATAAAATAGAAAAAAGAAAAAAAAT-AAAAAAAAAGAAAAAAGATAAAT
* * * *
11956 AAAGC-C-CAAAAAA-GAGAAAAAACAA-AAATACAAC
557 AAAGCACAAAAAAAATAAAAAAAAACAATAAA-ACAAT
* *
11990 AAAAAATATAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
*
12055 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGGCCTA
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
* *
12120 ACAATATAAAAGGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
* *
12185 AGAATTTAAAAATGCAAATAAGAAATGAAAGGAAA-TT-T--G------CAG----G-AAGAAAA
195 AGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAAA
* * * * * *
12235 GAATAAAAATGAAAAGACGAAAGATTTGGAATAAAAGACAGAAAAATAAAAAATTTTAAAACAAC
260 GAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAAT--AAAATATTAAAATAA-
* * * * *
12300 GAAAAAAGTAAAACAAGAAAAAATGAAAGTATATGAAAAAAAGAAAACAAGAAGAAGGAAAATTG
322 G-AAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAA-AAGA-AAGAAGAAAGAAAATTG
* * * *
12365 TGGAGGGAAAAAGTTATTAAAAAATTTCAAAGTAGAAAAAAAAGTAAAAAAGATTCAAAAAATAA
384 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG-AAAAAAA-TAAGAAA-A-TAAAAAAATAA
* * * *
12430 GAAAAAAAA--TTGAACTTTATAAAAAT-TTCCTGAAATATAAATAAAAAATAAATG--AAA-AG
445 AAAAAAAAATTTTGAACTTTATAAAAATGTT-TTAAAATATAAATAAAAAATAAATGAAAAATAT
* * * * * * * *
12489 ATAAATTAAGGAAAAA-AATAAAAATTAACAAAAAGAAAAAAG-T-AACAAAG---TAAGAAAAT
509 ATAAAAT-AGAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAAT
** *** *
12548 --AAAAAATTAGGGAATC-A-
573 AAAAAAAAACAATAAAACAAT
* * ** ***
12565 AAAAAATAT--CAA--AAGACAA-AATGAA--T-AAAAATTTGAAATATAAAATGGAAAAAACTT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAA-TTG-AATA-AAAATTTCAAAAA---
* ** * ** * * * * * *
12622 TTAGTTTAGAATGTACAAAAAAACAAAAAAAAAATATAACAAATAGAGGACAAAGA-T-ATAAA-
60 TGA-AATGGAATG-ACAAAATGA-AAAAAAATAGTTTAAAAAATACA--A-AAA-ATTGAAAAAC
* * * * * * * **
12684 ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAGGAAAAT
118 ATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTTAAT
* * ** **** * * ** * **
12746 GCACAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA-AAAAAGTGCGAACA
176 GCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTG-TAGGA
* * * * ** * **
12808 AAAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACATAAAAT-AAATT
239 AAAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAAAAAA
* * * ** * * * * **
12872 TTGAAAAAAAATGAAGAGGCAAAAATATGAAAGAA--AAGAAAAAGAAAAAAATTTATAGAAAAT
298 TAGAAAAATAA--AATA--TTAAAATAAGAAA-AATTAA-AACAAG-TAAAAA-TGA-A-AGCAT
* * * * * ** * * *** ** *
12935 TTTAAAACAAAGGAAA-AAGTGAAGAAAAATAAATGAAAGCACATAGAAAAAAGAAGAAAAATTT
353 ATGAAAAAAAAAGAAAGAAG-AAAG-AAAAT-TGTGAAGGGA-A-A-AAGTTATTA-AAAAATTA
* * ** * * * **** *
12999 GAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAA--TGAT-AA
411 CAAAGTAGAAAAAAATAA-G-AAAA-TAAAAAAAT--AA-AAAAAAAAATTTTGAACTTTATAAA
**** * * * * *
13061 AA-GAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACA
470 AATGTTTTAAA-AT--ATAAATAAAAAA-T---AAA---T-GAAAAATATAT-AAAATAGAAA-A
* * *
13125 AAGAAAGAAAATAAAAAACAAAAAGATAAAAGATAAATAAAGCAC------AA-AAAAACAAA-A
522 AAGAAA-AAAA-ATAAAA-AAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAAAAAAAAACA
*
13182 AT---ACAAC
584 ATAAAACAAT
* * *
13189 AAAAAATATAAAAAGTAAGAAAATAAAAAAGGGCAAAAATTGAATAAAAATTTCAAAATTGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
13254 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
66 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
*
13319 CAATATAAAAAGTCGGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGA
131 CAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGA
* * *
13384 GAATTTAAAAGCGCAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAATAGAATAGCAAGAAAA
196 GAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAA-AGAAAAGCAAGAAAA
* * * * *
13449 GAATAAAAATAAAAAGACAAAAGATTTG-------GAAT--AAAAA-ACAA-A--ACAACAA-AA
260 GAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATATTAAAATAAGAA
* * *
13500 AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAAGCAAGAAGAAGGAAATTTGTGAAG
325 AAATTAAAACAAGTAAAAATGAAAGCATATG-AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAG
*
13565 GGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAG-AAATAAAAAGATTCGAAAAATAA
389 GGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAA-AAT--AAAAA-AA
** * * * * *
13629 AAAAAATTGAACTTTATAAAAATTTTTTAGAATATAAATAAAAAATAACTGAAAAATAAAT-TAA
450 AAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATATATAAAA
* * * ** * * *
13693 GAGAAAAAATTAAATAAAATACCAAAAAGGAAAAAATA-AAATAAA-CA-AAAAAAAGTAACAAA
515 TAGAAAAAA-GAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAA-AAA
13755 GTAAGAA-AATAAAA-AATT
578 --AA-AACAATAAAACAA-T
**** * * * **
13773 CGCGAATCAAAAAAATATAATG-AAACAAAATGAA--T-AAAAATTTCAAATATAAAA-TGGAAA
1 AAAAAAT-ATAAAAA-GTAA-GAAAACAAAA--AAGGTCAAAAA-TT-GAATA-AAAATTTCAAA
* ** * ** * ** * *
13833 AATCTTTTAGTTTAGAATGTACAAAAAAAAAAAAAAATAG--CAAAGAGAGGAC-AAAGA-T-AT
58 AA----TGA-AATGGAATG-AC-AAAATGAAAAAAAATAGTTTAAA-A-AATACAAAAAATTGAA
* * * * * *
13893 AAA-ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAAG-
114 AAACATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGT
* * * * ** **** * * ** **
13953 AAAGTG-ACAAA-AAGAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAATAAAAAAAAAAGTGT
172 TAA-TGCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGT
** * * * * ** *
14016 GAACAAAAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAGGAAAATACAAAATACATAAAAT-A
235 -AGGAAAAA-A---AAG-AAAAGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAA
** * * ** * * * * * *
14080 AATTTTGACAAA-AAAATGAGAAAAAGAAGAAAAAATAAAA-AA-TGAAGAGGCAAA-AATATG-
294 AAAATAGAAAAATAAAAT-ATTAAAATAAGAAAAATTAAAACAAGTAAAAATG-AAAGCATATGA
* * * ** *
14140 AAAGAAAAGAAA-AAGAAA-AAAATT-T--ATGG--AAACTT-TTAAAACAAAGGAAAAAGT-GA
357 AAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AAA-AAATTACAAAGTAG-
* * * * *****
14196 ACAAAAAAAAATGAAAGCACATAAAAAA-AAGAATAAAAA-TTTGAA-AGGGGAAAAA-GTTAAT
419 A-AAAAAATAA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--T
* * * * *
14257 GAAAA-AT-TAT-AAAAATGCAAT-AGAAAATA-ACCAAGAAT-GATAAAAGAAAAAAAGATAGA
477 TAAAATATAAATAAAAAAT-AAATGA-AAAATATA-TAA-AATAGAAAAAAGAAAAAAA-ATA-A
* * *** * * * *
14316 AAAATAAAAAATTCCAAAACTTTATAAA-AATTTATGAAACTATAAACAAAGAAAGAA-AATAAA
536 AAAA-AAAGAA----AAAA---GATAAATAAAGCA-CAAA--AAAAATAAA-AAAAAACAATAAA
14379 A-AAT
589 ACAAT
* **
14383 -AAAAATAGAAAAAGATAA-ATAAAGCACAAAAA-AACAAAAATTGAATAAAAATTTCAAAAATG
1 AAAAAATATAAAAAG-TAAGA-AAA-CA-AAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATG
14445 AAATGGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGA
62 AAATGGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGA
*
14510 CCTAACAATATAAAAAGTCGGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAG
126 CCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAG
* *
14575 TATGAGAATTTAAAAACGCAAATAAGAAACGAAAGGAAATTTATAGGAAAAAAAAGAAAAGCAAG
191 TATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAG
*
14640 AAAAGAATAAAAATGAAAAGACAAAAGATTTGCAATAAAAAATAGAAAAATAAAATATTTAAAAT
256 AAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATA-TTAAAAT
*
14705 AACGAAGAAATTAAAACAAGTAAAAATGAAAGCATACG-AAAAAAAAGAAAGAAGAAAGAAAATT
320 AA-GAA-AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATT
14769 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAA
383 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAA
14834 CAAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATTATAT
448 -AAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAA-TATAT
14899 AAAATACGAAAAAAGGGAAAAATAAATAAATAAATAAAGAAAAAAGATAAATAAAGCAC-AAAAA
511 AAAATA-GAAAAAA--GAAAAA-AAATAAA-AAA-AAAGAAAAAAGATAAATAAAGCACAAAAAA
14963 AATAAAAAAAAACAATAAAACAAT
570 AATAAAAAAAAACAATAAAACAAT
*
14987 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
15052 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCT
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATAT-AAGACCT
* *
15117 AACAATATAAATAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCGAAATAAAAAAAAGTA
129 AACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTA
**
15182 TGAGAATTTAAAAACATAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAAGAAAAGCAAGA
193 TGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGG-AAAAAAAAGAAAAGCAAGA
* * * *
15247 AAAGAATAAAAATTAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAACTAAAA-A-T----T-
257 AAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAA-TAAAATATTAAAATA
* *
15305 -------TTAAAACAATTAAAAATGAAAGCATATG--AAAAAAAGCAAA-AAGAAGGAAAATTGT
321 AGAAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAG-AAAGAAGAAAGAAAATTGT
15360 GAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG--------AAGAAAATAAAAAAAT--AAAAA
385 GAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAAAA
*
15415 AAAATTTTGAACTTTATAAAAATTTTTTAAAATATAAATAAAAAATAAATTAGGGGAAAAA-ATA
450 AAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAA-T----GAAAAATATA
* * ** *
15479 -AAAA-AAAACGAAAAGAAAAAAAGTAACAAAGTAAGAAAATAA-A-AAAT-TAGCGAATCAAAA
510 TAAAATAGAA--AAAAGAAAAAAAATAA-AAAAAAAGAAAA-AAGATAAATAAAGC--A-CAAAA
* *
15539 AAATATAAAAAGACAA-AATGAATAAAAAT
568 AAA-ATAAAAA-AAAACAAT-AA-AACAAT
* * ** * * *
15568 GAAAAAACCTTTTAGTTTAGAATGTACAAAGAAAAACAAAAAAAAATATAACAAATAGAGGACAA
1 -AAAAAA-----TA---TAAAAAGT---AAG-AAAAC-AAAAAAGGT-CAA-AAATTGA--ATAA
* * * *
15633 AGATAT-AAAATATGAAA--G-ATGA-AAAAT-AAAATAAA-AGTTAATAAAAAATATAAATAAA
48 AAATTTCAAAA-ATGAAATGGAATGACAAAATGAAAAAAAATAGTT--TAAAAAATACAAA-AAA
* ** * * **
15691 ---AATAAA-AGA-AAGTGC--ACAA-A-AAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAA
109 TTGAA-AAACATATAAGACCTAACAATATAAA-AAG--TCA-G----ACAA--A-AAATTA-AAA
* * *** * * * * * * *
15747 TAAAAAAAAAGTGTGAACAAAAAGATTTAACAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACA
161 -AAGAGAAAAGT-T-AATGCAAA-A--TAA-AAAAAGTATG--AGAATTTAAAAACGCAAATA-A
* ** *
15812 -AAATACATAAAATAAATTT-T-GAGAAAAAAATGAGAAAAAG-AAGAAAAAAATAAAAAGTGAA
216 GAAAT---GAAAGGAAATTTGTAG-GAAAAAAA--AG-AAAAGCAAGAAAAGAATAAAAA-TGAA
* * * * **
15873 GAGGCAAAA-ATATGAAAGAAAAGAA-A-AAGAAA-AAAAT-TT---AT-AGAATATTTTAAAAC
273 AAGACAAAAGATTTGAAATAAAA-AATAGAA-AAATAAAATATTAAAATAAGAA-AAATTAAAAC
* ** * *
15929 AAAGGAAAAAGTGAACAAAAAAACATGAAACCACATAAA-AAA-AAG-AAGAAAAATT-TGAAAG
335 -AAGTAAAAA-TG----AAAGCATATGAAA--A-AAAAAGAAAGAAGAAAG-AAAATTGTG-AAG
* * * * * *
15990 GAGAAAAAGCTAATGAAAAATTGTAAAAATGCAATAGAAAATAACTGAGAATGATAAAAGAAAAA
389 G-GAAAAAG-TTATTAAAAAAT-TACAAA-G---TAGAAAA-AA---ATAA-G--AAAA-TAAAA
*** * * *
16055 AAGATAGAAAAAGAAAAAATTCCAAAACTTTATAAAAAT-TTATGAAACTATAAACAAAGCAAGA
439 AA-AT--AAAAA-AAAAAATT-TTGAACTTTATAAAAATGTT-TTAAAATATAAATAAA--AA-A
* **
16119 -AAAT-AAAAA-ATA-AAAATA-AAAAGAG-AAAAAAATGAAAGCAAAAGAAAAAAGATAAATAA
495 TAAATGAAAAATATATAAAATAGAAAAAAGAAAAAAAAT-AAAAAAAAAGAAAAAAGATAAATAA
* * * *
16178 AGC-CCAAAAAAA-GAGAAAAAACAA-AAATACAAC
559 AGCACAAAAAAAATAAAAAAAAACAATAAA-ACAAT
* * *
16211 AAAAAATAAAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
*
16276 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGGCCTA
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
* *
16341 ACAATATAAAAGGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
* *
16406 AGAATTTAAAAATGCAAATAAGAAATGAAAGGAAA-TT-T--G------CAG----G-AAGAAAA
195 AGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAAA
* * * * * *
16456 GAATAAAAATGAAAAGACGAAAGATTTGGAATAAAAGACAGAAAAATAAAAAATTTTAAAACAAC
260 GAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAAT--AAAATATTAAAATAA-
* * * * *
16521 GAAAAAAGTAAAACAAGAAAAAATGAAAGTATATGAAAAAAAGAAAACAAGAAGAAGGAAAATTG
322 G-AAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAA-AAGA-AAGAAGAAAGAAAATTG
* * * *
16586 TGGAGGGAAAAAGTTATTAAAAAATTTCAAAGTAGAAAAAAAAGTAAAAAAGATTCAAAAAATAA
384 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG-AAAAAAA-TAAGAAA-A-TAAAAAAATAA
* * * *
16651 GAAAAAAAA--TTGAACTTTATAAAAAT-TTCCTGAAATATAAAT-AAAAATAAATG--AAA-AG
445 AAAAAAAAATTTTGAACTTTATAAAAATGTT-TTAAAATATAAATAAAAAATAAATGAAAAATAT
* * * * * * * *
16709 ATAAATTAAGGAAAAA-AATAAAAATTAACAAAAAGAAAAAAG-T-AACAAAG---TAAGAAAAT
509 ATAAAAT-AGAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAAT
** *** *
16768 --AAAAAATTAGGGAATC-A-
573 AAAAAAAAACAATAAAACAAT
* * ** ***
16785 AAAAAATAT--CAA--AAGACAA-AATGAA--T-AAAAATTTGAAATATAAAATGGAAAAAACTT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAA-TTG-AATA-AAAATTTCAAAAA---
* ** * * * * * * * *
16842 TTAGTTTAGAATGTACAAAA-AAACAAAAAAAAATATAACAAATAGAGGACAAAGA-T-ATAAA-
60 TGA-AATGGAATG-ACAAAATGAA-AAAAAATAGTTTAAAAAATACA--A-AAA-ATTGAAAAAC
* * * * * * * **
16903 ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAGGAAAAT
118 ATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTTAAT
* * ** **** * * ** * **
16965 GCACAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA-AAAAAGTGCGAACA
176 GCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTG-TAGGA
* * * * ** * **
17027 AAAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACATAAAAT-AAATT
239 AAAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAAAAAA
* ** ** * * * * * *
17091 TTGAGGAA-AAAATGAGAAAAAGAAGAAAAA-T-AAA-AA-TGAAGAGGCAAA-AATATG-AAAG
298 TAGAAAAATAAAAT-ATTAAAATAAGAAAAATTAAAACAAGTAAAAATG-AAAGCATATGAAAAA
** *
17149 AAAAGAAA-AAGAAA-AAAATT-T-ATA--G-AAAA-TT-TTAAAACAAAGGAAAAAGT-GAAGA
361 AAAAGAAAGAAGAAAGAAAATTGTGA-AGGGAAAAAGTTATT-AAA-AAATTACAAAGTAGAA-A
* * * * *** * *
17204 AAAATAAATGAAAGCACATAGAAAA-AAGAAGAAAAA-TTTGAA-AGGAGAAAAA-GTTAATGAA
422 AAAAT-AA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--TTAA
* * * * *
17265 AA-AT-TAT-AAAAATGCAAT-AGAAAATA-ACCAAGAAT-GATAAAAGAAAAAAAGTTAGAAAA
480 AATATAAATAAAAAAT-AAATGA-AAAATATA-TAA-AATAGAAAAAAGAAAAAAA-ATA-AAAA
* * * *
17324 ATAAAAAATTCCAAAACTTTATAAA-AATTTATGAAACTATAAACAAAGA-AAGAAAATAAAAAA
539 A-AAAGAA----AAAA---GATAAATAA---A-G-CAC-A-AAA-AAA-ATAA-AAAA-AAACAA
*
17387 CAAAA-AGAT
585 TAAAACA-AT
* * * *** * * *
17396 AAAAGATA-AATAAAGCACAAAAAAACAAAAATACAACAAAAAAT--ATAAAAA-GTAAGAAAAT
1 AAAAAATATAA-AAAG--TAAGAAAACAAAAA-AGGTCAAAAATTGAATAAAAATTTCA-AAAAT
* * * * * ** *
17457 -AAA--AAAGGGCAAAAATTGAATAAAAAT--TTCAAAATTGAAATGGAATGACAAAATGAAAAA
61 GAAATGGAATGAC-AAAA-TGAAAAAAAATAGTT-TAAA---AAATACAA--A-AAATTGAAAAA
* ** * * * * * * * *
17517 -AAAT-AG-TTTAAAAAATACAAAAAAT-TGA-AAAACATATAAGACCTAACAATATAAAAAGTC
117 CATATAAGACCT-AACAATATAAAAAGTCAGACAAAA-A-ATTA-A---AA-AAGA-GAAAAGTT
*** * * * * * * * *
17577 AGACAAAAAATTAAAAAAG-A-GAAAAGTT---AATGCAAAATAA-AAAAG-TATGAGAATTTAA
173 A-ATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGC-AAATAAGAAATGAAAGGA-AATTT-G
* * * *** * * * **
17635 AAGCGCAAATAAGAAATGAAAGGAAATTTG-TGGGAA-AAAAATAGAATAGCAAGAAAAGAATAA
234 TAG-G-AAA-AA-AAA-GAAAAGCAA---GAAAAGAATAAAAAT-GAAAAG--ACAAAAGATTTG
* * ** ** * *
17698 AAATAAAAAGACA-AAAGATTTGGAATAAAAAAACAAAACAACAAAAAAATTAAAACAAGTAAAA
288 AAATAAAAA-ATAGAAA-A-ATAAAATATTAAAA------TA-AGAAAAATTAAAACAAGTAAAA
* * *
17762 ATGAAAGCATATGAAAAAAAAAAGCAAGAAGAAGGAAATTTGTGAAGGGAAAAAGTTATTAAAAA
343 ATGAAAGCATATG-AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATTAAAAA
**
17827 ATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAGATTCAAAAAATAAAAAAATTGAACTTTATA
407 ATTACAAAGTAGAAAAAAATAAGAAAATAAAAAA-A-T-AAAAAA-AAAAATTTTGAACTTTAT-
* * *
17892 AAAAAT-TTTTAAAATATAAATAAAAAATAAATGAAAAA-ATA-AATTAAGAGAAAAAATTAAAT
467 AAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATATATAA--AATAGAAAAAA-GAAAA
** * * * **
17954 AAAATACCAAAAAAGGAAAAA-AT-AA-AAA-TA-AACAAAAATAAAAAGTAACAAAGTAAGAA-
529 AAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAAAAAAAAAC-AA-TAA-AAC
18013 AAT
591 AAT
** * * * * * *
18016 AAAAAAT-TAGCGAA-TCAA-AAAA-ATATAATG-AAACAAAATGAATAAAAATTTCAAAATATA
1 AAAAAATATA-AAAAGT-AAGAAAACAAAAAAGGTCAA-AAATTGAATAAAAATTTCAAAA-ATG
* * *** * ** * **
18076 AAATGGAA--A-AAACTTTTAGTTTAGAAT-GTACAAAGAAAAACAAAAGAAAAAAGATATAAA-
62 AAATGGAATGACAAA--ATGA-AAAAAAATAGTTTAAA-AAATAC--AA-AAAATTGA-A-AAAC
*** * * * * * *
18136 ATATGAAAGATGAAAAACAAAAT-AAAAGTTA-ATAAAAAATATAAATAAAAATAAAAG-AAAGT
118 ATAT--AAGA--CCTAACAATATAAAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTTAA-T
* * ** **** * *** * *
18198 G-ACAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA--AAAAAAGCAAGAA
176 GCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAA
* * * * * * * * * * ** * *
18258 AAAAATAAAAAAGGAA-AATACAA-AATACAT-AATAGATAATACA--TAAAAT-AAATTTTGAC
240 AAAAA-AGAAAAGCAAGAAAAGAATAA-AAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAA
** * * * * * * *
18317 AAA-AAAATGAGAAAAAGAAGAAAAAAATAAAA-AA-TGAAGAGGCAAA-AATATG-AAAGAAAA
303 AAATAAAAT-ATTAAAATAAG-AAAAATTAAAACAAGTAAAAATG-AAAGCATATGAAAAAAAAA
* * ** *
18377 GAAA-AAGAAA-AAAATT-T--ATGG--AAACTT-TTAAAACAAAGGAAAAAGT-GAACAAAAAA
365 GAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AAA-AAATTACAAAGTAG-A-AAAAAA
* * * * ***** *
18433 AAATGAAAGCACATAAAAAA-AAGAATAAAAA-TTTGAA-AGGGGAAAAA-GTTAATGAAAAATT
426 TAA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--T-TAAAA-T
* *
18494 ATAAA-AATGCAATAGA-AAAT-AACCAAGA-ATGATAAAAGA-AAAAAAGATAGAAAAATAAAA
483 ATAAATAA---AA-A-ATAAATGAA--AA-ATAT-ATAAAATAGAAAAAAGA-AAAAAAAT-AAA
* * * *
18554 AATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAATAAA-AAT
537 AA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA-AAAATAAAAAA-AAACAAT
*
18618 AGAAAAAGATAAAT
586 ----AAA-A-CAAT
* * * * * *
18632 AAAGCACAAAAAAACAAAAATACAACAAAAAATATAAAAAGGACAAAAATTGAATAAAAATTTCA
1 -AA--A-AAATATA-AAAAGT---A-AGAAAACA-AAAAAGGTCAAAAATTGAATAAAAATTTCA
18697 AAAATGAAATGGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAT
56 AAAATGAAATGGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACAT
*
18762 ATAAGACCTAACAATATAAAAAGTCGGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAA
120 ATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAA
* *
18827 AAAAAGTATGAGAATTTAAAAACGCAAATAAGAAACGAAAGGAAATTTATAGGAAAAAAAAGAAA
185 AAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAA
*
18892 AGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGCAATAAAAAATAGAAAAATAAAATATT
250 AGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATA-T
*
18957 TAAAATAACGAAGAAATTAAAACAAGTAAAAATGAAAGCATACG-AAAAAAAAGAAAGAAGAAAG
314 TAAAATAA-GAA-AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAG
19021 AAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAA
377 AAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAA
19086 TAAAAACAAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAAT-AAAAA-AAATGAAAAA
442 TAAAAA-AAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAA
19149 T-TATAAAATACGAAAAAAGGGAAAAATAAATAAATAAATAAAGAAAAAAGATAAATAAAGCAC-
506 TATATAAAATA-GAAAAAA--GAAAAA-AAATAAA-AAA-AAAGAAAAAAGATAAATAAAGCACA
19212 AAAAAAAT------AAA-AA-AAAACAAT
565 AAAAAAATAAAAAAAAACAATAAAACAAT
* *
19233 AAAAAATATAAAAAGTAAGAAAATAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
* **
19298 AGAATGACAAAAACAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTA
66 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATAT-AAGACCTA
*
19363 ACAATATAAATAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTAT
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTAT
**
19428 GAGAATTTAAAAACATAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAAGAAAAGCAAGAA
194 GAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGG-AAAAAAAAGAAAAGCAAGAA
* * * *
19493 AAGAATAAAAATTAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAAT----TA--AAAAT--G
258 AAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATATTAAAATAAG
* **
19550 -------AAAGC-A-T----ATGAAA--A-A--AAGCAAAAAG-AAG--G--A-AAA-TTGTGAA
323 AAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTGAA
19590 GGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAAT--AAAAAAAA
388 GGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAAAAAAA
*
19653 ATTTTGAACTTTATAAAAATTTTTTAAAATATAAATAAAAAATAAATTAGGGGAAAAA-AT-TAA
453 ATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAA-T----GAAAAATATATAA
* ** *
19716 AATA-AACGAAAAGAAAAAAAGTAACAAAGTAAGAAAATAA-A-AAAT-TAGCGAATCAAAAAAA
513 AATAGAA--AAAAGAAAAAAAATAA-AAAAAAAGAAAA-AAGATAAATAAAGC--A-CAAAAAAA
* *
19777 TATAAAAAGACAA-AATGAATAAAAAT
571 -ATAAAAA-AAAACAAT-AA-AACAAT
* * ** * * *
19803 GAAAAAACCTTTTAGTTTAGAATGTACAAAGAAAAACAAAAAAAAAATATAACAAATAGAGGACA
1 -AAAAAA-----TA---TAAAAAGT---AAG-AAAAC--AAAAAAGGT-CAA-AAATTGA--ATA
* * * *
19868 AAGATAT-AAAATATGAAA--G-ATGA-AAAAT-AAAATAAA-AGTTAATAAAAAATATAAATAA
47 AAAATTTCAAAA-ATGAAATGGAATGACAAAATGAAAAAAAATAGTT--TAAAAAATACAAA-AA
* ** * * * **
19926 A---AATAAA-AGA-AAGTGC--ACAA-AAAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAA
108 ATTGAA-AAACATATAAGACCTAACAATATAAA-AAG--TCA-G----ACAA--A-AAATTA-AA
* * *** * * * * * * *
19983 ATAAAAAAAAAGTGTGAACAAAAAGATTTAACAAAAAGCAAGAAAAAAATAAAAAAGGAAAATAC
160 A-AAGAGAAAAGT-T-AATGCAAA-A--TAA-AAAAAGTATG--AGAATTTAAAAACGCAAATA-
* ** *
20048 A-AAATACATAAAATAAATTT-T-GAGAAAAAAATGAGAAAAAG-AAGAAAAAAATAAAAAGTGA
215 AGAAAT---GAAAGGAAATTTGTAG-GAAAAAAA--AG-AAAAGCAAGAAAAGAATAAAAA-TGA
* * * * * *
20109 AGAGGCAAAA-ATATGAAAGAAAAGAAAAAGAAAAAATTTATAGAATATTTTAAAACAAAGGAAA
272 AAAGACAAAAGATTTGAAA-TAAA-AAATAG-AAAAA--TA-A-AATA--TTAAAA-TAA-GAAA
* * * * *
20173 AAGT-GAACAA-AAAAACATGAAACCACAT-----AAAAA-AAAGAAG--A-AAAATT-TGAAAG
326 AATTAAAACAAGTAAAA-ATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTG-AAG
* * * * * *
20226 GAGAAAAAGCTAATGAAAAATTGTAAAAATGCAATAGAAAATAACTGAGAATGATAAAAGAAAAA
389 G-GAAAAAG-TTATTAAAAAAT-TACAAA-G---TAGAAAA-AA---ATAA-G--AAAA-TAAAA
*** * * *
20291 AAGATAGAAAAAGAAAAAATTCCAAAACTTTATAAAAAT-TTATGAAACTATAAACAAAGCAAGA
439 AA-AT--AAAAA-AAAAAATT-TTGAACTTTATAAAAATGTT-TTAAAATATAAATAAA--AA-A
* **
20355 -AAAT-AAAAA-ATA-AAAATA-AAAAGAG-AAAAAAATGAAAGCAAAAGAAAAAAGATAAATAA
495 TAAATGAAAAATATATAAAATAGAAAAAAGAAAAAAAAT-AAAAAAAAAGAAAAAAGATAAATAA
* * * *
20414 AGC-CCAAAAAAA-GAGAAAAAACAA-AAATACAAC
559 AGCACAAAAAAAATAAAAAAAAACAATAAA-ACAAT
* * *
20447 AAAAAATAAAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
*
20512 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGGCCTA
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
* *
20577 ACAATATAAAAGGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
* * *
20642 AGAATTTAAAAATGCAAATAAGAAATGAAAGGAAATTTGCAGGAAGAAAAAAAGAAAAGGAAGAA
195 AGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGG-A-AAAAAAAGAAAAGCAAGAA
* * * * * *
20707 AAGAATAAAAATGAAAAGACGAAAGATTTGGAATAAAAGACAGAAAAATAAAAAATTTTAAAACA
258 AAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAAT--AAAATATTAAAATA
* * * * *
20772 ACGAAAAAAGTAAAACAAGAAAAAATGAAAGTATATGAAAAAAAAAAACAAGAAGAAGGAAAATT
321 A-G-AAAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGA-AAGAAGAAAGAAAATT
* * * *
20837 GTGGAGGGAAAAAGTTATTAAAAAATTTCAAAGTAGAAAAAAAAGTAAAAAAGATTCAAAAAATA
383 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG-AAAAAAA-TAAGAAA-A-TAAAAAAATA
* * *
20902 AGAAAAAAAA--TTGAACTTTATAAAAAT-TTCCTGAAATATAAATAAAAAATAAATG--AAA-A
444 AAAAAAAAAATTTTGAACTTTATAAAAATGTT-TTAAAATATAAATAAAAAATAAATGAAAAATA
* * * * * * * * *
20961 GATAAATTAAGGAAAAA-AATAAAAATTAACAAAAAGAAAAAAG-T-AACAAAG---TAAGAAAA
508 TATAAAAT-AGAAAAAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAA
** *** *
21020 T--AAAAAATTAGGGAATC-A-
572 TAAAAAAAAACAATAAAACAAT
* * ** ***
21038 AAAAAATAT--CAA--AAGACAA-AATGAA--T-AAAAATTTGAAATATAAAATGGAAAAAACTT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAA-TTG-AATA-AAAATTTCAAAAA---
* ** * ** * * * * * *
21095 TTAGTTTAGAATGTACAAAAAAAAAAAAAAAAATATAACAAATAGAGGACAAAGA-T-ATAAA-A
60 TGA-AATGGAATG-ACAAAATGAAAAAAAATAGTTTAAAAAATACA--A-AAA-ATTGAAAAACA
* * * * * * * **
21157 TATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAATAAAGGAAAATG
119 TAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGAGAAAAGTTAATG
* * ** **** * * ** * **
21219 CACAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA-AAAAAGTGCGAACAA
177 CA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTG-TAGGAA
* * * ** * **
21281 AAAGATTTAAGAAAAAGCAAGAAAA-AATAAAAAAGGAAAATACAAAATACATAAAAT-AAATTT
240 AAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAAAAAAT
* ** * * * * * * * *
21344 TG-AAAA-AAAATGAGAAAAAGAAGAAAAA--AAAAAAAATGAAGAGGCAAA-AATATG-AAAGA
299 AGAAAAATAAAAT-ATTAAAATAAGAAAAATTAAAACAAGTAAAAATG-AAAGCATATGAAAAAA
** *
21403 AAAGAAA-AAGAAA-AAAATT-T-ATA--G-AAAA-TT-TTAAAACAAAGGAAAAAGT-GAAGAA
362 AAAGAAAGAAGAAAGAAAATTGTGA-AGGGAAAAAGTTATT-AAA-AAATTACAAAGTAGAA-AA
* * * * *** * *
21458 AAATAAATGAAAGCACATAGAAAA-AAGAAGAAAAA-TTTGAA-AGGAGAAAAA-GTTAATGAAA
423 AAAT-AA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--T-TAA
* * *
21519 AATTATAAA-AATGCAATAGA-AAAT-AACCAAGA-ATGATAAAAGA-AAAAAAGTTAGAAAAAT
480 AA-TATAAATAA---AA-A-ATAAATGAA--AA-ATAT-ATAAAATAGAAAAAAG-AAAAAAAAT
* * * *
21579 AAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAACAAA
534 -AAAAA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA-AAAATAAAAAA-AAA
* *
21644 AAGATAAAA-GAT
582 CA-ATAAAACAAT
* * * * ** * *
21656 AAATAAAGCACAAAAA-AAAAAAATACAACAAAAAATATAAAAAGTAAGAAAATAAAAAAGGGCA
1 AAA-AAA-TATAAAAAGTAAGAAA-ACAA-AAAAGGT-CAAAAA-T-TG--AAT----------A
* *
21720 AAAATTGAAT-AAAAATTTCAAAATTGAAATGGAATGACAAAATG-AAAAAAATAGTTTAAAAAA
47 AAAATT---TCAAAAA--T-GAAA-TGGAA-----TGACAAAATGAAAAAAAATAGTTTAAAAAA
21783 TACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATT-AAAAAGA
100 TACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGA
*
21847 GAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAGCGCAAATAAGAAATGAAAGGAAA
165 GAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAA
* * * *
21912 TTTGTGGGAAAAAAATAGAATAGCAAGAAAAGAATAAAAATAAAAAGACAAAAGATTTGGAATAA
230 TTTGTAGGAAAAAAA-AGAAAAGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAA
* * * *
21977 AAAACA-AAACAATAAAAAATTTTAAAACAACAAAAAAATTAAAACAAGTAAAAATGAAAGCATA
294 AAAATAGAAA-AAT--AAAATATTAAAA-TA-AGAAAAATTAAAACAAGTAAAAATGAAAGCATA
* * *
22041 TGAAAAAAAAAAGCAAGAAGAAGGAAATTTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTA
354 TG-AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTA
* ** *
22106 GAAAAAAAAAAGAAAATAAAAAAGATTCGAAAAATAAAAAAAATTGAACTTTATAAAAATTTTTT
418 GAAAAAAATAAGAAAATAAAAAA-A-T--AAAAA-AAAAAATTTTGAACTTTATAAAAATGTTTT
* * * * *
22171 AAAATATAAATAAAAAATAACTGAAAAA-ATA-AATTAAGAGAAAAAATTAAATAAAATACCAAA
478 AAAATATAAATAAAAAATAAATGAAAAATATATAA--AATAGAAAAAA-GAAAAAAAATA-AAAA
* * * *
22234 AAAGGAAAAAATAAAAATAAA-CA-AAAAAAAGTAACAAAGTAAGAA-AATAAAA-AATT
539 AAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAA-AAA--AA-AACAATAAAACAA-T
**** * * * **
22290 CGCGAATCAAAAAAATATAATG-AAACAAAATGAA--T-AAAAATTTCAAATATAAAA-TGGAAA
1 AAAAAAT-ATAAAAA-GTAA-GAAAACAAAA--AAGGTCAAAAA-TT-GAATA-AAAATTTCAAA
* ** * *
22350 AATCTTTTAGTTTAGAATGTAC-AAA-GAAAAACAAA-A---AAAAAAATAGCAAAGAGAGGACA
58 AA----TGA-AATGGAATG-ACAAAATGAAAAA-AAATAGTTTAAAAAATA-C-AA-A-A--A-A
** * * * * *
22409 AAGATATAAA-ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAAA
109 TTGA-A-AAACATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-TAAA-AAAGA
* * * * * ** **** * * **
22470 TAAAAG-AAAGTG-ACAAA-AAGAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAATAAAAAAA
165 GAAAAGTTAA-TGCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGA
** ** * * * * **
22532 AAAGTGTGAACAAAAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACA
228 AATTTGT-AGGAAAAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATT
* * * * * ** * *
22597 T--AATAGATAATACATAAAAT-AAATTTTGACAAAAAAATGAGAAAAAGAAGAAAAAAATAAAA
286 TGAAATAAAAAATAGA-AAAATAAAATATT------AAAATAAGAAAAATTA-AAACAAGT-AAA
* * *
22659 AATGAAGAGGCAAAAATATG-AAAGAAAAGAAA-AAGAAA-AAAATT-T--ATGG--AAACTT-T
342 AATGAA-A-GC----ATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTAT
** * * * * *
22715 TAAAACAAAGGAAAAAGT-GAACAAAAAAAAATGAAAGCACATAAAAAA-AAGAATAAAAA-TTT
401 T-AAA-AAATTACAAAGTAG-A-AAAAAATAA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTT
***** * * * *
22777 GAA-AGGGGAAAAA-GTTAATGAAAA-AT-TAT-AAAAATGCAAT-AGAAAATA-ACCAAGAAT-
458 GAACTTTATAAAAATGTT--TTAAAATATAAATAAAAAAT-AAATGA-AAAATATA-TAA-AATA
* * * *** * *
22834 GATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA-AATTTATGAAACTAT
517 GAAAAAAGAAAAAAA-ATA-AAAAA-AAAGAA----AAAA---GATAAATAAAGCA-CAAA--AA
* *
22898 AAACAAAGAAAGAA-AATAAAA-AAT
569 AAATAAA-AAAAAACAATAAAACAAT
* **
22922 -AAAAATAGAAAAAGATAA-ATAAAGCACAAAAA-AACAAAAATTGAATAAAAATTTCAAAAATG
1 AAAAAATATAAAAAG-TAAGA-AAA-CA-AAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATG
22984 AAATGGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGA
62 AAATGGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGA
*
23049 CCTAACAATATAAAAAGTCGGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAG
126 CCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAG
* *
23114 TATGAGAATTTAAAAACGCAAATAAGAAACGAAAGGAAATTTATAGGAAAAAAAAGAAAAGCAAG
191 TATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAG
*
23179 AAAAGAATAAAAATGAAAAGACAAAAGATTTGCAATAAAAAATAGAAAAATAAAATATTTAAAAT
256 AAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATA-TTAAAAT
*
23244 AACGAAGAAATTAAAACAAGT-AAAATGAAAGCATACG-AAAAAAAAGAAAGAAGAAAGAAAATT
320 AA-GAA-AAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATT
23307 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAA
383 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAA
23372 CAAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAAT-AAAAATAAATGAAAAATTATAT
448 -AAAAAATTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAA-TATAT
23436 AAAATACGAAAAAAGGGAAAAATAAATAAATAAATAAAGAAAAAAGATAAATAAAGCAC-AAAAA
511 AAAATA-GAAAAAA--GAAAAA-AAATAAA-AAA-AAAGAAAAAAGATAAATAAAGCACAAAAAA
23500 AAT---AAAAAA-AAT---A-AAT
570 AATAAAAAAAAACAATAAAACAAT
*
23516 AAAAAATATAAAAAGTAAGAAAA-AAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
* *
23580 AGAATGACAAAA-AAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAAGACCTA
66 GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATAT-AAGACCTA
23644 ACAATAT-AAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTAT
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTAT
**
23708 GAGAATTTAAAAACATAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAA
194 GAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAA
* * * *
23773 AGAATAAAAATTAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAAT----TA--AAAAT--G-
259 AGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATATTAAAATAAGA
* **
23829 ------AAAGC-A-T----ATGAAA--A-A--AAGCAAAAAG-AAG--G--A-AAA-TTGTGAAG
324 AAAATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAG
23870 GGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAAT-AAAAAAT---AAAAAAAA
389 GGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAAAAAAAA
*
23931 TTTTGAACTTTATAAAAATTTTTTAAAATATAAATAAAAAATAAATTAGGGGAAAAA-ATA-AAA
454 TTTTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAA-T----GAAAAATATATAAA
* ** *
23994 A-A-AACGAAAAGAAAAAAAGTAACAAAGTAAGAAAATAA-A-AAAT-TAGCGAATCAAAAAAAT
514 ATAGAA--AAAAGAAAAAAAATAA-AAAAAAAGAAAA-AAGATAAATAAAGC--A-CAAAAAAA-
* *
24054 ATAAAAAGACAAAATGAATAAAACTTTTAGT
571 AT-AAAA-A-AAAA-CAATAAAAC----AAT
** * * * * ** * * * *
24085 TTAGAATGTACAAAG-AA-AAACAAAAAAAAAAT-ATAAAATAGAGGACAAAGATAT-AAAATAT
1 AAAAAATATAAAAAGTAAGAAA-ACAAAAAAGGTCA-AAAATTGA--ATAAAAATTTCAAAA-AT
* * *
24146 GAAA--G-ATGA-AAAAT-AAAATAAA-AGTTAATAAAAAATATAAATAAA---AATAAA-AGA-
61 GAAATGGAATGACAAAATGAAAAAAAATAGTT--TAAAAAATACAAA-AAATTGAA-AAACATAT
** * * **** *
24200 AAGTGC--ACAA-AAAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAATAAAAAAAAGTGTG
122 AAGACCTAACAATATAAA-AAG--TCA-GACAAAAAATTA-AAA-AAG------AGAAAAGT-T-
*** * * * * * * * * * **
24262 AACAAAAAGATTTAAGAAAAAGCAAGAAAAAAAATAAAAAAGGAAAATACAAAATACATAAAATA
173 AATGCAAA-A--TAA-AAAAAGTATG---AGAATTTAAAAACGCAAAT--AAGA-A-ATGAAAGG
* * * *
24327 AAATTTG-A-GAAAAAATGAGAAAAAG-AAGAAAA-AATAAAAAGTGAAGAGGCAAAA-ATATGA
227 AAATTTGTAGGAAAAAA-AAG-AAAAGCAAGAAAAGAATAAAAA-TGAAAAGACAAAAGATTTGA
* * *
24387 AAGAAAAGAA-A-AAGAAA-AAAAT-TT---AT-AGAAAATTTTAAAACAAAGGAAAAAGTGAAC
289 AATAAAA-AATAGAA-AAATAAAATATTAAAATAAGAAAA-ATTAAAAC-AAGTAAAAA-TG---
** * * * *
24444 AAAAAAACATGAAACCACATAAA-AAA-AAG-AAGAAAAATT-TGAAAGGAGAAAAAGCTAATGA
346 -AAAGCATATGAAA--A-AAAAAGAAAGAAGAAAG-AAAATTGTG-AAGG-GAAAAAG-TTATTA
* * * *
24505 AAAATTGTAAAAATGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAAGAAA
403 AAAAAT-TACAAA-G---TAGAAAA-AA---ATAA-G--AAAA-TAAAAAA-AT--AAAAA-AAA
*** * * *
24570 AAATTCCAAAACTTTATAAAAAT-TTATGAAACTATAAACAAAGCAAGA-AAAT-AAAAA-ATA-
451 AAATT-TTGAACTTTATAAAAATGTT-TTAAAATATAAATAAA--AA-ATAAATGAAAAATATAT
* ** * *
24630 AAAATA-AAAAGAG-AAAAAAATGAAAGCAAAAGAAAAAAGATAAATAAAGC-CCAAAAAAA-GA
511 AAAATAGAAAAAAGAAAAAAAAT-AAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAA
* *
24691 GAAAAAACAA-AAATACAAC
575 AAAAAAACAATAAA-ACAAT
24710 AAAAAATA-AAAAAG---G----------A---CAAAAATTGAATAAAAATTTCAAAAATGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
*
24758 GGAATGACAAAATGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGGCCTA
66 GGAATGACAAAATG-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
* * *
24823 ACAATATAAAAGGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTACG
130 ACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATG
* * *
24888 AGAATTTAAAAATGCAAATAAGAAATGAAAGGAAATTTGCAGGAAGAAAAAAAGAAAAGGAAGAA
195 AGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGG-A-AAAAAAAGAAAAGCAAGAA
* * * * * *
24953 AAGAATAAAAATGAAAAGACGAAAGATTTGGAATAAAAGACAGAAAAATAAAAAATTTTAAAACA
258 AAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAAT--AAAATATTAAAATA
* * * * *
25018 ACGAAAAAAGTAAAACAAGAAAAAATGAAAGTATATGAAAAAAAAAAAACAAGAAGAAGGAAAAT
321 A-G-AAAAATTAAAACAAGTAAAAATGAAAGCATATG-AAAAAAAAAGA-AAGAAGAAAGAAAAT
* * * *
25083 TGTGGAGGGAAAAAGTTATTAAAAAATTTCAAAGTAGAAAAAAAAGTAAAAAAGATTCAAAAAAT
382 TGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG-AAAAAAA-TAAGAAA-A-TAAAAAAAT
* * *
25148 AAGAAAAAAAA--TTGAACTTTATAAAAAT-TTCCTGAAATATAAATAAAAAATAAATG--AAA-
443 AAAAAAAAAAATTTTGAACTTTATAAAAATGTT-TTAAAATATAAATAAAAAATAAATGAAAAAT
* * * * * * * * *
25207 AGATAAATTA-AGGAAAA-AATAAAAATTAACAAAAAGAAAAAAG-T-AACAAAG---TAAGAAA
507 ATATAAAATAGA-AAAAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAA
*** *
25265 ATAAAAAATTAGGGAATCAAAAAAAT
571 ATAAAAAA--AAACAAT-AAAACAAT
* * * * * ** * * *
25291 ATCAAAAGACAAAATG-AATAAAA-ATTTGAAA--T-ATAAAATGGAA-AAAACTTT----TA-G
1 A-AAAAATATAAAAAGTAAGAAAACA--AAAAAGGTCA-AAAATTGAATAAAAATTTCAAAAATG
** * * *** * *
25345 -TTTAGAATGTACAAAA--AAAACAAAAAAAAATAAACAAATAGAGGACAAAGA-T-ATAAA-AT
62 AAATGGAATG-ACAAAATGAAAA-AAAATAGTTTAAA-AAATACA--A-AAA-ATTGAAAAACAT
* * * * * * **
25404 ATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAATATAAATAAAA-ATAAAGGAAAATG
120 AT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAAT-T-AA-AAAAGAGAAAAGTTAATG
* * ** **** * * ** * **
25465 CACAAA-AAAAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAAT-AAA-AAAAAGTGCGAACAA
177 CA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTG-TAGGAA
* * * * ** * **
25527 AAAGATTTAAGAAAAAGCAAGAAAAAAATAAAAAAGGAAAATACAAAATACATAAAAT-AAATTT
240 AAA-A---AAG-AAAAGCAAGAAAAGAAT-AAAAATGAAAAGACAAAAGATTTGAAATAAAAAAT
* * * * * * * * * *
25591 TGAAAAA-AAGAGA--AAAAGAAGAAAAAATAAAA-AA-TGAAGAGGCAAA-AATATG-AAAGAA
299 AGAAAAATAAAATATTAAAATAAGAAAAATTAAAACAAGTAAAAATG-AAAGCATATGAAAAAAA
** *
25649 AAGAAA-AAGAAA-AAAATT-T-ATA--G-AAAA-TT-TTAAAACAAAGGAAAAAGT-GAAGAAA
363 AAGAAAGAAGAAAGAAAATTGTGA-AGGGAAAAAGTTATT-AAA-AAATTACAAAGTAGAA-AAA
* * * * *** * *
25704 AATAAATGAAAGCACATAGAAAA-AAGAAGAAAAA-TTTGAA-AGGAGAAAAA-GTTAATGAAAA
424 AAT-AA-GAAA--ATA-AAAAAATAAAAAAAAAAATTTTGAACTTTATAAAAATGTT--T-TAAA
* * *
25765 ATTATAAA-AATGCAATAGA-AAAT-AACCAAGA-ATGATAAAAGA-AAAAAAGTTAGAAAAATA
481 A-TATAAATAA---AA-A-ATAAATGAA--AA-ATAT-ATAAAATAGAAAAAAG-AAAAAAAAT-
* * * * *
25825 AAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAA
534 AAAAA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA-AAAATAAAAAA-AAAC
*
25890 AGATAAAA-GAT
583 A-ATAAAACAAT
* * ** * ** *
25901 AAATAAAGCACAAAAAACAAAATACAACAAAAAATAT-AAAAAGTAAGAAAATAAAAAAGGGCAA
1 AAA-AAA-TATAAAAAGTAAGA-A-AACAAAAAAGGTCAAAAA-T-TG--AAT----------AA
* *
25965 AAATTGAAT-AAAAATTTCAAAATTGAAATGGAATGACAAAATGAAAAAAAATAGTTTAAAAAAT
48 AAATT---TCAAAAA--T-GAAA-TGGAA-----TGACAAAATGAAAAAAAATAGTTTAAAAAAT
26029 ACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAG
101 ACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAG
*
26094 AAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAGCGCAAATAAGAAATGAAAGGAAAT
166 AAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAAT
* * * *
26159 TTGTGGGAAAAAAATAGAATAGCAAGAAAAGAATAAAAATAAAAAGACAAAAGATTTGGAATAAA
231 TTGTAGGAAAAAAA-AGAAAAGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTGAAATAAA
* * * *
26224 AAACA-AAACAATAAAAAATTTTAAAACAACAAAAAAATTAAAACAAGTAAAAATGAAAGCATAT
295 AAATAGAAA-AAT--AAAATATTAAAA-TA-AGAAAAATTAAAACAAGTAAAAATGAAAGCATAT
* * *
26288 GAAAAAAAAAAGCAAGAAGAAGGAAATTTGTGAAGGGAAAAAGTTATTAAAAAAATTACAAAGTA
355 G-AAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AAAAAATTACAAAGTA
** * * *
26353 GAAAAAAATAA-AAAA-AAAAAAGA-AAAAATAAAAAAAATTGAACTTTATAAAATTTTTTTAGA
418 GAAAAAAATAAGAAAATAAAAAA-ATAAAAA-AAAAAATTTTGAACTTTATAAAAATGTTTTAAA
* * * * *
26415 ATATAAATAAAAAATAACTGAAAAA-ATA-AATTAAGAGAAAAAATTAAATAAAATACCAAAAAA
481 ATATAAATAAAAAATAAATGAAAAATATATAA--AATAGAAAAAA-GAAAAAAAATA-AAAAAAA
* * *
26478 GGAAAAAATAAAAATAAA-CA-AAAAAAAAGTAACAAAGTAAGAA-AATAAAA-AATT
542 AGAAAAAAGATAAATAAAGCACAAAAAAAA-TAA-AAA--AA-AACAATAAAACAA-T
**** * * * **
26532 CGCGAATCAAAAAAATATAATG-AAACAAAATGAA--T-AAAAATTTCAAATATAAAA-TGGAAA
1 AAAAAAT-ATAAAAA-GTAA-GAAAACAAAA--AAGGTCAAAAA-TT-GAATA-AAAATTTCAAA
* ** * * *
26592 AATCTTTTAGTTTAGAATGTAC-AAA-GAAAAAAAA-A---AAAAAAATAGCAAAGAGAGGACAA
58 AA----TGA-AATGGAATG-ACAAAATGAAAAAAAATAGTTTAAAAAATA-C-AA-A-A--A-AT
* * * * * * *
26651 AGATATAAA-ATATGAAAGA--TGAAAAATAAAATAAAAGTTA-ATAAAAAA-TAAATAAAAATA
110 TGA-A-AAACATAT--AAGACCT-AACAAT-ATA-AAAAGTCAGACAAAAAATTAAA-AAAGAGA
* * * * ** **** * * **
26711 AAAG-AAAGTG-ACAAA-AAGAGAAGTTTGAGGTTTTAAAATTATAAAGAAGAAATAAAAAAAAA
167 AAAGTTAA-TGCA-AAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAAT-GAAAGGAA
** ** * * * * * **
26773 AAGTGTGAACAAAAAGATTTAAGAAAAAGCAAGAAAAAAAAAAAAAGGAAAATACAAAATACAT-
229 ATTTGT-AGGAAAAA-A---AAG-AAAAGCAAGAAAAGAATAAAAATGAAAAGACAAAAGATTTG
* * * * * ** * *
26837 -AATAGATAATACATAAAAT-AAATTTTGACAAAAAATGAGAAAAAGAAGAAAAAAATAAAAATG
288 AAATAAAAAATAGA-AAAATAAAATATT-----AAAATAAGAAAAATTA-AAACAAGTAAAAATG
* * *
26900 AAGAGGCAAAAATATG-AAAGAAAAGAAA-AA-AAA-AAAATT-T--ATGG--AAACTT-TTAAA
346 AA-A-GC----ATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AA
** * * * ***
26955 ACAAAGGA-AAAGT-GAACAAAAAAAATGAAAGCACATAAAAAAAGAATAAAAATTTGAAA-GGG
404 A-AAATTACAAAGTAGAA-AAAAATAA-G-AA--A-ATAAAAAAATAA-AAAAA---AAAATTTT
* * * * * ** * * *
27017 GAAAAGTTAATGAAAAA--TTATAAAA-ATGCAATAGAAAAT-AACCAAGAAT-GATAAAAGA-A
458 G--AACTTTAT-AAAAATGTTTTAAAATAT-AAATAAAAAATAAATGAAAAATATATAAAATAGA
* * * * *
27076 AAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAA
519 AAAAAGA-AAAAAAAT-AAAAA----AAAA---GA-AAAAA--GAT-AAA-TA-AAGCACA-AAA
*
27141 GAAAATAAAAAATAAA-AATAGAAAAAGATAAAT
568 -AAAATAAAAAA-AAACAAT----AAA-A-CAAT
* * * * * *
27174 AAAGCACAAAAAACAAAAATACAACAAAAAATATAAAAAGGACAAAAATTGAATAAAAATTTCAA
1 AAA--A-AATATA-AAAAGT---A-AGAAAACA-AAAAAGGTCAAAAATTGAATAAAAATTTCAA
27239 AAATGAAATGGAATGACAAAATGAAAAAAAAATAGTTTAAAAAAATACAAAAAATTGAAAAACAT
57 AAATGAAATGGAATGACAAAATG-AAAAAAAATAGTTT-AAAAAATACAAAAAATTGAAAAACAT
27304 ATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAA
120 ATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAA
* *
27369 AAAAAGTATGAGAAATTTAAAACACGCAAATAAGAAACGAAAGTGAAATTTATAGGAATAAAAAA
185 AAAAAGTATGAG-AATTTAAAA-ACGCAAATAAGAAATGAAAG-GAAATTTGTAGG-A-AAAAAA
* * *
27434 AGAACAAGCCAGAAAAGAAT-AAAATGAAAAGAACAAACGAGTTTGCAATAAAAAATAGAAAAAT
245 AGAA-AAGCAAGAAAAGAATAAAAATGAAAAG-ACAAAAGA-TTTGAAATAAAAAATAGAAAAAT
* * *
27498 AAAATATTTAAAATAACGAGAGCAAATTAAAACAAGTAAAGATGAAAAGGCATTACGAAAAAAGA
307 AAAATA-TTAAAATAA-GA-A--AAATTAAAACAAGTAAAAATG-AAA-GCA-TATGAAAAAAAA
27563 AGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATTAAAACAAATTACAAAGTAAGAAAAAAA
364 AGAAAGAAGAAAGAAAATTGTGAAGGGAAAAAGTTATT-AAA-AAATTACAAAGT-AGAAAAAAA
*
27628 TAAGCAAAGATAAAAAAATAAAAACAAAAAATTTTGAAGCTTTATAAAAATGTTTTAAAAATAGA
426 TAAG-AAA-ATAAAAAAATAAAAA-AAAAAATTTTGAA-CTTTATAAAAATGTTTT-AAAATATA
*
27693 AAT-AAAAATAAATGAAAAATTATATAGTAATATAACGAAAAAAGGGAAGAAATAAATAATAAAT
486 AATAAAAAATAAATGAAAAA-TATATA--AA-AT-A-GAAAAAA--GAA-AAA-AAATAA-AAAA
27757 AAAGAAAAAAGATAAAT-AAGCAC--AAAAAAT-AAAAAAAACAATAAAACAAT
540 AAAGAAAAAAGATAAATAAAGCACAAAAAAAATAAAAAAAAACAATAAAACAAT
*
27807 AAAAAATAT-AAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAAGGAAAT
1 AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
*
27871 -GAATGACAAAA-AAAAAAAAATAG
66 GGAATGACAAAATGAAAAAAAATAG
Statistics
Matches: 14256, Mismatches: 2886, Indels: 4836
0.65 0.13 0.22
Matches are distributed among these distances:
548 3 0.00
549 4 0.00
550 9 0.00
551 10 0.00
552 55 0.00
553 13 0.00
554 6 0.00
555 47 0.00
556 22 0.00
557 67 0.00
558 83 0.01
559 23 0.00
560 3 0.00
561 16 0.00
562 14 0.00
563 6 0.00
564 15 0.00
565 10 0.00
566 23 0.00
567 33 0.00
568 36 0.00
569 56 0.00
570 29 0.00
571 30 0.00
572 18 0.00
573 52 0.00
574 57 0.00
575 78 0.01
576 88 0.01
577 101 0.01
578 198 0.01
579 147 0.01
580 186 0.01
581 157 0.01
582 92 0.01
583 126 0.01
584 91 0.01
585 115 0.01
586 175 0.01
587 118 0.01
588 189 0.01
589 215 0.02
590 372 0.03
591 388 0.03
592 283 0.02
593 298 0.02
594 261 0.02
595 221 0.02
596 170 0.01
597 287 0.02
598 235 0.02
599 205 0.01
600 152 0.01
601 153 0.01
602 188 0.01
603 347 0.02
604 277 0.02
605 213 0.01
606 300 0.02
607 208 0.01
608 169 0.01
609 191 0.01
610 224 0.02
611 167 0.01
612 163 0.01
613 194 0.01
614 158 0.01
615 176 0.01
616 194 0.01
617 162 0.01
618 196 0.01
619 203 0.01
620 194 0.01
621 190 0.01
622 166 0.01
623 213 0.01
624 207 0.01
625 155 0.01
626 161 0.01
627 139 0.01
628 205 0.01
629 221 0.02
630 262 0.02
631 129 0.01
632 150 0.01
633 120 0.01
634 120 0.01
635 94 0.01
636 96 0.01
637 121 0.01
638 78 0.01
639 104 0.01
640 178 0.01
641 107 0.01
642 142 0.01
643 147 0.01
644 76 0.01
645 100 0.01
646 74 0.01
647 67 0.00
648 87 0.01
649 97 0.01
650 109 0.01
651 50 0.00
652 38 0.00
653 57 0.00
654 31 0.00
655 47 0.00
656 61 0.00
657 52 0.00
658 26 0.00
659 7 0.00
660 6 0.00
661 1 0.00
ACGTcount: A:0.65, C:0.05, G:0.12, T:0.17
Consensus pattern (593 bp):
AAAAAATATAAAAAGTAAGAAAACAAAAAAGGTCAAAAATTGAATAAAAATTTCAAAAATGAAAT
GGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
CAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGA
GAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTAGGAAAAAAAAGAAAAGCAAGAAAAG
AATAAAAATGAAAAGACAAAAGATTTGAAATAAAAAATAGAAAAATAAAATATTAAAATAAGAAA
AATTAAAACAAGTAAAAATGAAAGCATATGAAAAAAAAAGAAAGAAGAAAGAAAATTGTGAAGGG
AAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAGAAAATAAAAAAATAAAAAAAAAAATT
TTGAACTTTATAAAAATGTTTTAAAATATAAATAAAAAATAAATGAAAAATATATAAAATAGAAA
AAAGAAAAAAAATAAAAAAAAAGAAAAAAGATAAATAAAGCACAAAAAAAATAAAAAAAAACAAT
AAAACAAT
Found at i:11930 original size:20 final size:18
Alignment explanation
Indices: 11905--11958 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
11895 GCAAGAAAAT
11905 AAAAAATAAAATAAAAAGA
1 AAAAAAT-AAATAAAAAGA
**
11924 GAAAAAATGAAAGCAAAAGA
1 -AAAAAAT-AAATAAAAAGA
11944 AAAAAGATAAATAAA
1 AAAAA-ATAAATAAA
11959 GCCCAAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAAAATAAATAAAAAGA
Found at i:12321 original size:16 final size:17
Alignment explanation
Indices: 12291--12322 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12281 TAAAAAATTT
12291 TAAAACAACGAAAAAAG
1 TAAAACAACGAAAAAAG
12308 TAAAACAA-GAAAAAA
1 TAAAACAACGAAAAAA
12323 TGAAAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (17 bp):
TAAAACAACGAAAAAAG
Found at i:12744 original size:23 final size:22
Alignment explanation
Indices: 12695--12744 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
12685 TATGAAAGAT
* * *
12695 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
12717 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
12740 GAAAA
1 GAAAA
12745 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:13181 original size:26 final size:25
Alignment explanation
Indices: 13128--13181 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
13118 ATAAACAAAG
* *
13128 AAAGAAAATAAAAAACAAAAAGATA
1 AAAGAAAATAAAAAACAAAAAAACA
**
13153 AAAGATAAATAAAGCACAAAAAAACA
1 AAAGA-AAATAAAAAACAAAAAAACA
13179 AAA
1 AAA
13182 ATACAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (25 bp):
AAAGAAAATAAAAAACAAAAAAACA
Found at i:14121 original size:18 final size:19
Alignment explanation
Indices: 14090--14127 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14080 AATTTTGACA
*
14090 AAAAAATGAGAAAAAGAAG
1 AAAAAATGAAAAAAAGAAG
*
14109 AAAAAAT-AAAAAATGAAG
1 AAAAAATGAAAAAAAGAAG
14127 A
1 A
14128 GGCAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAAAATGAAAAAAAGAAG
Found at i:14950 original size:17 final size:19
Alignment explanation
Indices: 14926--14968 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
14916 AAAAATAAAT
14926 AAATAAATAAAG-A-AAAA
1 AAATAAATAAAGCACAAAA
*
14943 AGATAAATAAAGCACAAAA
1 AAATAAATAAAGCACAAAA
14962 AAATAAA
1 AAATAAA
14969 AAAAAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 11 0.50
18 1 0.05
19 10 0.45
ACGTcount: A:0.77, C:0.05, G:0.07, T:0.12
Consensus pattern (19 bp):
AAATAAATAAAGCACAAAA
Found at i:14963 original size:52 final size:51
Alignment explanation
Indices: 14865--14964 Score: 114
Period size: 51 Copynumber: 1.9 Consensus size: 51
14855 AAAATGTTTT
* * * *
14865 AAAATATAAATAAAAAATAAATGAAAAATTATATAAAATACGAAAAAAGGG
1 AAAATATAAATAAAAAATAAATGAAAAAATAAATAAAACACAAAAAAAGGG
*
14916 AAAA-ATAAATAAATAAATAAA-GAAAAAAGATAAATAAAGCACAAAAAAA
1 AAAATATAAATAAA-AAATAAATG-AAAAA-ATAAATAAAACACAAAAAAA
14965 TAAAAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
50 10 0.24
51 16 0.39
52 15 0.37
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (51 bp):
AAAATATAAATAAAAAATAAATGAAAAAATAAATAAAACACAAAAAAAGGG
Found at i:14971 original size:8 final size:8
Alignment explanation
Indices: 14916--15000 Score: 50
Period size: 8 Copynumber: 10.4 Consensus size: 8
14906 GAAAAAAGGG
14916 AAAAATAA
1 AAAAATAA
*
14924 ATAAATAA
1 AAAAATAA
* *
14932 ATAAAGAA
1 AAAAATAA
14940 AAAAGATAA
1 AAAA-ATAA
*
14949 ATAAAGCACAA
1 A-AAA--ATAA
14960 AAAAAT--
1 AAAAATAA
14966 AAAAA-AA
1 AAAAATAA
*
14973 AACAATAA
1 AAAAATAA
*
14981 AACAATAA
1 AAAAATAA
14989 AAAATATAA
1 AAAA-ATAA
14998 AAA
1 AAA
15001 GTAAGAAAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
6 5 0.08
7 4 0.07
8 31 0.51
9 11 0.18
10 6 0.10
11 4 0.07
ACGTcount: A:0.79, C:0.05, G:0.04, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:16542 original size:16 final size:17
Alignment explanation
Indices: 16512--16543 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16502 TAAAAAATTT
16512 TAAAACAACGAAAAAAG
1 TAAAACAACGAAAAAAG
16529 TAAAACAA-GAAAAAA
1 TAAAACAACGAAAAAA
16544 TGAAAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (17 bp):
TAAAACAACGAAAAAAG
Found at i:16963 original size:23 final size:22
Alignment explanation
Indices: 16914--16963 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
16904 TATGAAAGAT
* * *
16914 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
16936 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
16959 GAAAA
1 GAAAA
16964 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:17425 original size:26 final size:25
Alignment explanation
Indices: 17372--17425 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
17362 ATAAACAAAG
* *
17372 AAAGAAAATAAAAAACAAAAAGATA
1 AAAGAAAATAAAAAACAAAAAAACA
**
17397 AAAGATAAATAAAGCACAAAAAAACA
1 AAAGA-AAATAAAAAACAAAAAAACA
17423 AAA
1 AAA
17426 ATACAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.78, C:0.07, G:0.07, T:0.07
Consensus pattern (25 bp):
AAAGAAAATAAAAAACAAAAAAACA
Found at i:17928 original size:12 final size:11
Alignment explanation
Indices: 17901--17935 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
17891 AAAAAATTTT
*
17901 TAAAATATAAA
1 TAAAAAATAAA
17912 TAAAAAATAAA
1 TAAAAAATAAA
17923 TGAAAAAATAAA
1 T-AAAAAATAAA
17935 T
1 T
17936 TAAGAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (11 bp):
TAAAAAATAAA
Found at i:17997 original size:23 final size:23
Alignment explanation
Indices: 17970--18022 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
17960 CCAAAAAAGG
17970 AAAAAATAA-AAA-TAAACAAAAAT
1 AAAAAATAACAAAGT-AA-AAAAAT
* *
17993 AAAAAGTAACAAAGTAAGAAAAT
1 AAAAAATAACAAAGTAAAAAAAT
18016 AAAAAAT
1 AAAAAAT
18023 TAGCGAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 19 0.76
24 5 0.20
25 1 0.04
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.13
Consensus pattern (23 bp):
AAAAAATAACAAAGTAAAAAAAT
Found at i:18258 original size:18 final size:18
Alignment explanation
Indices: 18231--18270 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
18221 TTAAAATTAT
*
18231 AAAGAAGAAATAAA-AAA
1 AAAGAAGAAAAAAATAAA
18248 AAAGCAAGAAAAAAATAAA
1 AAAG-AAGAAAAAAATAAA
18267 AAAG
1 AAAG
18271 GAAAATACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 9 0.45
19 7 0.35
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAGAAGAAAAAAATAAA
Found at i:18350 original size:19 final size:20
Alignment explanation
Indices: 18317--18379 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
18307 AAATTTTGAC
*
18317 AAAAAAATGAGAAAAAGAAG
1 AAAAAAATGAAAAAAAGAAG
*
18337 AAAAAAAT-AAAAAATGAAG
1 AAAAAAATGAAAAAAAGAAG
18356 AGGCAAAAATATGAAAGAAAAGAA
1 A---AAAAA-ATGAAA-AAAAGAA
18380 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 10 0.29
20 8 0.24
22 5 0.15
23 2 0.06
24 3 0.09
25 6 0.18
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (20 bp):
AAAAAAATGAAAAAAAGAAG
Found at i:19204 original size:17 final size:19
Alignment explanation
Indices: 19180--19222 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
19170 AAAAATAAAT
19180 AAATAAATAAAG-A-AAAA
1 AAATAAATAAAGCACAAAA
*
19197 AGATAAATAAAGCACAAAA
1 AAATAAATAAAGCACAAAA
19216 AAATAAA
1 AAATAAA
19223 AAAAAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 11 0.50
18 1 0.05
19 10 0.45
ACGTcount: A:0.77, C:0.05, G:0.07, T:0.12
Consensus pattern (19 bp):
AAATAAATAAAGCACAAAA
Found at i:19225 original size:8 final size:8
Alignment explanation
Indices: 19170--19262 Score: 50
Period size: 8 Copynumber: 11.5 Consensus size: 8
19160 GAAAAAAGGG
19170 AAAAATAA
1 AAAAATAA
*
19178 ATAAATAA
1 AAAAATAA
* *
19186 ATAAAGAA
1 AAAAATAA
19194 AAAAGATAA
1 AAAA-ATAA
*
19203 ATAAAGCACAA
1 A-AAA--ATAA
19214 AAAAAT--
1 AAAAATAA
19220 AAAAA-AA
1 AAAAATAA
*
19227 AACAAT-A
1 AAAAATAA
19234 AAAAATATA
1 AAAAATA-A
*
19243 AAAAGTAA
1 AAAAATAA
*
19251 GAAAATAA
1 AAAAATAA
19259 AAAA
1 AAAA
19263 GGTCAAAAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
6 5 0.08
7 10 0.16
8 28 0.44
9 11 0.17
10 6 0.09
11 4 0.06
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:19651 original size:8 final size:8
Alignment explanation
Indices: 19621--19651 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
19611 TACAAAGTAG
19621 AAAAAAAT
1 AAAAAAAT
*
19629 AAGAAAAT
1 AAAAAAAT
19637 AAAAAAAT
1 AAAAAAAT
19645 AAAAAAA
1 AAAAAAA
19652 AATTTTGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:20795 original size:16 final size:17
Alignment explanation
Indices: 20765--20796 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20755 TAAAAAATTT
20765 TAAAACAACGAAAAAAG
1 TAAAACAACGAAAAAAG
20782 TAAAACAA-GAAAAAA
1 TAAAACAACGAAAAAA
20797 TGAAAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (17 bp):
TAAAACAACGAAAAAAG
Found at i:21216 original size:23 final size:22
Alignment explanation
Indices: 21167--21216 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
21157 TATGAAAGAT
* * *
21167 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
21189 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
21212 GAAAA
1 GAAAA
21217 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:21678 original size:26 final size:25
Alignment explanation
Indices: 21625--21714 Score: 65
Period size: 26 Copynumber: 3.6 Consensus size: 25
21615 ATAAACAAAG
* *
21625 AAAGAAAATAAAAAACAAAAAGATA
1 AAAGAAAATAAAAAACAAAAAAAAA
**
21650 AAAGATAAATAAAGCACAAAAAAAAA
1 AAAGA-AAATAAAAAACAAAAAAAAA
* * * * * *
21676 AAATACAACAAAAAA-TATAAAAAG
1 AAAGAAAATAAAAAACAAAAAAAAA
*
21700 TAAGAAAATAAAAAA
1 AAAGAAAATAAAAAA
21715 GGGCAAAAAT
Statistics
Matches: 48, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
24 17 0.35
25 11 0.23
26 20 0.42
ACGTcount: A:0.78, C:0.06, G:0.07, T:0.10
Consensus pattern (25 bp):
AAAGAAAATAAAAAACAAAAAAAAA
Found at i:22029 original size:17 final size:17
Alignment explanation
Indices: 21982--22030 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
21972 AATAAAAAAC
21982 AAAACAATAAAAAATTTT
1 AAAACAATAAAAAA-TTT
* *
22000 AAAACAACAAAAAAATT
1 AAAACAATAAAAAATTT
22017 AAAACAAGTAAAAA
1 AAAACAA-TAAAAA
22031 TGAAAGCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.73, C:0.08, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAACAATAAAAAATTT
Found at i:22660 original size:19 final size:20
Alignment explanation
Indices: 22627--22689 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
22617 AAATTTTGAC
*
22627 AAAAAAATGAGAAAAAGAAG
1 AAAAAAATGAAAAAAAGAAG
*
22647 AAAAAAAT-AAAAAATGAAG
1 AAAAAAATGAAAAAAAGAAG
22666 AGGCAAAAATATGAAAGAAAAGAA
1 A---AAAAA-ATGAAA-AAAAGAA
22690 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 10 0.29
20 8 0.24
22 5 0.15
23 2 0.06
24 3 0.09
25 6 0.18
ACGTcount: A:0.73, C:0.02, G:0.17, T:0.08
Consensus pattern (20 bp):
AAAAAAATGAAAAAAAGAAG
Found at i:23487 original size:17 final size:19
Alignment explanation
Indices: 23463--23505 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 19
23453 AAAAATAAAT
23463 AAATAAATAAAG-A-AAAA
1 AAATAAATAAAGCACAAAA
*
23480 AGATAAATAAAGCACAAAA
1 AAATAAATAAAGCACAAAA
23499 AAATAAA
1 AAATAAA
23506 AAAAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 11 0.50
18 1 0.05
19 10 0.45
ACGTcount: A:0.77, C:0.05, G:0.07, T:0.12
Consensus pattern (19 bp):
AAATAAATAAAGCACAAAA
Found at i:23539 original size:20 final size:19
Alignment explanation
Indices: 23495--23541 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
23485 AATAAAGCAC
23495 AAAAAAATAAAAAAAATAA
1 AAAAAAATAAAAAAAATAA
* *
23514 ATAAAAAATATAAAAAGTAA
1 A-AAAAAATAAAAAAAATAA
23534 GAAAAAAA
1 -AAAAAAA
23542 AAAGGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.92
21 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13
Consensus pattern (19 bp):
AAAAAAATAAAAAAAATAA
Found at i:23540 original size:41 final size:38
Alignment explanation
Indices: 23452--23542 Score: 92
Period size: 41 Copynumber: 2.2 Consensus size: 38
23442 CGAAAAAAGG
* *
23452 GAAAAATAAATAAATAAATAAAGAAAAAAGATAAATAAA
1 GAAAAA-AAATAAAAAAATAAAGAAAAAAGATAAAAAAA
* *
23491 GCACAAAAAAATAAAAAAAATAAATAAAAAATATAAAAAGTAA
1 G-A-AAAAAAAT-AAAAAAATAAAGAAAAAAGATAAAAA--AA
23534 GAAAAAAAA
1 GAAAAAAAA
23543 AAGGTCAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
39 1 0.02
40 5 0.12
41 33 0.77
42 1 0.02
43 3 0.07
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (38 bp):
GAAAAAAAATAAAAAAATAAAGAAAAAAGATAAAAAAA
Found at i:25041 original size:16 final size:17
Alignment explanation
Indices: 25011--25042 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25001 TAAAAAATTT
25011 TAAAACAACGAAAAAAG
1 TAAAACAACGAAAAAAG
25028 TAAAACAA-GAAAAAA
1 TAAAACAACGAAAAAA
25043 TGAAAGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (17 bp):
TAAAACAACGAAAAAAG
Found at i:25462 original size:23 final size:22
Alignment explanation
Indices: 25413--25462 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
25403 TATGAAAGAT
* * *
25413 GAAAAATAAAATAAAAGTTAAT
1 GAAAAATAAAATAAAAATAAAG
*
25435 AAAAAATATAAATAAAAATAAAG
1 GAAAAATA-AAATAAAAATAAAG
25458 GAAAA
1 GAAAA
25463 TGCACAAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (22 bp):
GAAAAATAAAATAAAAATAAAG
Found at i:26275 original size:17 final size:17
Alignment explanation
Indices: 26228--26276 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
26218 AATAAAAAAC
26228 AAAACAATAAAAAATTTT
1 AAAACAATAAAAAA-TTT
* *
26246 AAAACAACAAAAAAATT
1 AAAACAATAAAAAATTT
26263 AAAACAAGTAAAAA
1 AAAACAA-TAAAAA
26277 TGAAAGCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.73, C:0.08, G:0.02, T:0.16
Consensus pattern (17 bp):
AAAACAATAAAAAATTT
Found at i:26367 original size:7 final size:7
Alignment explanation
Indices: 26355--26387 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
26345 ACAAAGTAGA
26355 AAAAAAT
1 AAAAAAT
26362 AAAAAA-
1 AAAAAAT
*
26368 AAAAAAG
1 AAAAAAT
26375 AAAAAAT
1 AAAAAAT
26382 AAAAAA
1 AAAAAA
26388 AATTGAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.91, C:0.00, G:0.03, T:0.06
Consensus pattern (7 bp):
AAAAAAT
Done.