Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168180.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_418, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27751
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Found at i:1893 original size:26 final size:26
Alignment explanation
Indices: 1854--1906 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1844 GTTGACTTAG
*
1854 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1880 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1906 G
1 G
1907 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4556 original size:25 final size:26
Alignment explanation
Indices: 4505--4556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4495 GTTGACTTAG
4505 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
4531 GCATATAGAGTTCATT-CCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
4556 G
1 G
4557 GTCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:5011 original size:896 final size:889
Alignment explanation
Indices: 1790--5475 Score: 4373
Period size: 896 Copynumber: 4.2 Consensus size: 889
1780 GTGACACCCT
* * * *
1790 GCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGG
1 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
1855 CATACGGATTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACT
66 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGGTCGGACCGGACC
* ** * * * * * *
1920 AAGGGTAACGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTACTGTATTTTTTTTAGCCCGGGG
131 GAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGC-CTATTTTTTTTCGCCCGAGG
* * * * * **
1985 CACCATCACCAAAGCATTATCGGAGAACCTGACCGACGACATAGGGGTT-TGGTGATGGGGGGTG
195 CACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGG-G
* *
2049 -GAGGGGGTGTTGC-ACATGATGT-CGATGGTGCTGGTA---GCCTTACATT-GCCCC-AT-CC-
259 CGGGGGGGTG-TGCAACATGATGTGCGATGGTGCTGGTACTGGCCTTATATTGGCCCCTATCCCT
* *
2104 CAT--AACC-C--GAA-GCAC-CGCCCCTCTAAAGAGC-TATG-GATTTTACAGGCTTGCTGCCA
323 CATCAAACCTCGAGAACTCACAC-CCCCT-TAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCA
*
2160 GTAGCCATTAAAGTGTCCTG-AAT-GGGAGA-TTTTTTCAAAATGGTCAC-AAATCCTGTACAC-
386 GTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCCTGTACACT
* * *
2220 TCTAGTTTTTAGCTGCAA-TTTTTTGTGCATGCCAACAAAATACAAGGATTCA-G-CTACCAATT
449 TCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAAAAAAATACAAGGA-TCACGTCTACCAAGT
* * * *
2282 GTTCGGGCCAAAACTCCTTCCG--ATAA-TTT--AAAAATCTCGAACCGTAAAAAG-TTCAAAAA
512 -TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * * *
2341 ATATGAAAAATAGAAAACGAGTCATCTTGCCAATGAAACTTAACATGAAGGCTTAAGGGACAATT
576 TTATGAAAAATAGAAAACGAGTCGTCTT-CCCATGAAACTTCACATGAAGGCATAAGGGACCATT
* * *
2406 GTCATGAATGTAACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGAAGTGCCTAAAC
640 GT-ATGAAT-TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
2471 CCACCTACCACTCTATCGATCAACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCTCC
703 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCC
* * *
2536 CGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTATGATCGGACCAG
768 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAG
* * * * * *
2601 ATCAAGGGTTGTGGCAGCAGGATCAGTAGCACGTAGGCGGGGACTCGGTCAATCCCCG
833 ACCGAGGGTTGTGGCAGCAGGATCAGTAGCACGCAGG-GGGGACCCGATCGATCCCCG
* ** * * *** *
2659 GCTTGCGCAGCCTGCCATTCTGGTCGGCTGAGCACCTACACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
* ** **
2724 CGTATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGT-AGGATCGGACCAAAC
66 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGG-TCGGACCGGAC
* *** * * ***
2788 CGAGGGCTATAGGTGCACATGTTGGGCTCGAGCATGTGCTGGTGCCTCATCTTTTTTCAATCGAG
130 CGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCT-ATTTTTTTTCGCCCGAG
* ** * * *
2853 GCACCATCACCGTAGCATTGTCGGAGAACCTGACCGGCGGCATTCGGGTTCCGACGATTGGGGGG
194 GCACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGG
*
2918 C-GGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
259 CGGGGGGGTGTGCA-ACATGATGTGCGAT-GGTGCTGGTAC-TGG-CCTTATATTGG-CCCCTAT
*
2982 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGTTGC
319 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGC
3047 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
384 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
*
3112 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACATGGATCACGTCTA-CAAGT
449 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AAAAAAATACAAGGATCACGTCTACCAAGT
** * *
3176 TTGGGGCTGAAACTCCTTCTGAAAAAGTTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAAT
512 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * * *
3241 TGTTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATCGC
577 TATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACATGAAGGCATAAGGGACCATTGT
* * *
3306 ATGAATTTACAAGCCATAAAAAAGGCATTGGCATGGTAGAAATATGCAGATGTGCCTAAACCCAC
642 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
3371 CTGCCAACCTATCAATCCATGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCACC
707 CTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
3436 CGCTCGTTTCGTCGATTGGCTTAAGCATACGGAGTTCATTCTTAGTCTAAGATCGAGACCAGACC
772 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCG-GACCAGACC
* * * * *
3501 GAGGGTTGTGGCAGTAGGATTAGCAGCATGCAGGGGGGATCGCCCGATCGATTCCCG
836 GAGGGTTGTGGCAGCAGGATCAGTAGCACGCAGGGGGGA---CCCGATCGATCCCCG
* * * * * * * *
3558 GTTTGGGCATCCTACCCCTCTGGTCGGTTGAACGCCCGTACGCTCGTTTCGTGGGTTAACTTACG
1 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
* ** *
3623 CATAC-GAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAACATCGGACCGGAT
66 CATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGGTCGGACCGGAC
* * * * * * *
3687 CAAAGGTTGCCGTTGCACATGCTGGGCTCGAACATGTGCTGGTGCCCCAATTTTTTT-GCCCGAG
130 CGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTG-CCTATTTTTTTTCGCCCGAG
** * * * * * *
3751 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGTTTTCGGCGATTGGGAGG
194 GCACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGG
* * * * *
3816 CGGGGGAAGGTGCGC-ACATGATGTGCGA---TG--GGTACTGG---T-TCTTGGTCCTTATCTC
259 CGGGGG--GGTGTGCAACATGATGTGCGATGGTGCTGGTACTGGCCTTATATTGGCCCCTATCCC
* * *
3871 TTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
322 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAG
* **
3936 TAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCAATACACTTCG
387 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCG
* * * *
4001 AATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATAATGTCTACCCAGTTTGG
452 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * **
4066 GACCAAAAGTCCTTCTAAAAAAATTTAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTG
516 GGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATG
* * *
4131 AAAAATAGAAAACGAGTCGTCTTCCCGTGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGA
581 AAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGA
*
4196 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTATACCCACCTAC
646 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
4261 CACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCAGCT
711 CACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
* * *
4326 CGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCCTTCCTAGTCTAAGGTCGGACCAGACCGAGGG
776 CGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
* ** * * * * * *
4391 TTGCGATAGCAAGATCGGTAGCACACAGGGGGGGACCTGGTCGATCCCCA
841 TTGTGGCAGCAGGATCAGTAGCACGCA-GGGGGGACCCGATCGATCCCCG
* * * *
4441 GCTTCCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
** *
4506 CATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATT-CCAGTGTAAGGTCAGACCGGACC
66 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGGTCGGACCGGACC
* * ** * * * *
4570 GAGGGTTGTGGGTGCACATGCCGATCTCGGGCATGTGCTGGTGTCATATTTTTTTTCGCTCGGGG
131 GAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTG-CCTATTTTTTTTCGCCCGAGG
*
4635 CACCGTCACCGAAGCATCA-CAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
195 CACCATCACCGAAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-GGGGGG
*
4699 GCGGGGGGGTGTGCGAACATGATGTGTGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTA
258 GCGGGGGGGTGTGC-AACATGATGTGCGAT-GGTGCTGGTAC-TGG-CCTTATATTGG-CCCCTA
* *
4763 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
318 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTG
*
4828 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTTCAC
383 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
4893 TTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAATAAAAATACAAGTATCACGTCTACCAAGT
448 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGT
** ** *
4958 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAATTGTAAAAAGTTTTAAAAAT
512 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
5023 TATTAAAAATAAAAAACGAATCGTCTTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGT
577 TATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACATGAAGGCATAAGGGACCATTGT
*
5088 ATGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
642 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
5153 TTGCCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTGCC
707 CTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
5218 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACAG
772 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCG
* * * *
5283 AGGGTTGTGGTAGTAGGATC-GATAGCACGCAAGGGGGACCCGATCGATCCCTG
837 AGGGTTGTGGCAGCAGGATCAG-TAGCACGCAGGGGGGACCCGATCGATCCCCG
* * * * *
5336 ACCTGCGCATCCTACTCCTCTGGCCGGCTGAGCGCCTCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC-CGTACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * * * *
5401 GCATACAAAGTTCATTCCCAATCAAAGCATGTGCAGTTCATTCCCAGTCTAAGGTTGGACTGGAC
65 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGGTCGGACCGGAC
5466 CGAGGGTTGC
130 CGAGGGTTGC
5476 AACAGCAGGA
Statistics
Matches: 2382, Mismatches: 357, Indels: 128
0.83 0.12 0.04
Matches are distributed among these distances:
868 6 0.00
869 206 0.09
870 18 0.01
871 3 0.00
872 10 0.00
876 1 0.00
877 8 0.00
878 1 0.00
879 4 0.00
880 2 0.00
881 2 0.00
882 71 0.03
883 154 0.06
884 30 0.01
885 51 0.02
886 448 0.19
887 16 0.01
888 17 0.01
889 44 0.02
890 18 0.01
891 22 0.01
892 32 0.01
893 25 0.01
894 19 0.01
895 60 0.03
896 723 0.30
897 69 0.03
898 111 0.05
899 202 0.08
900 3 0.00
901 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGGTCGGACCGGACC
GAGGGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCTATTTTTTTTCGCCCGAGGC
ACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGGCG
GGGGGGTGTGCAACATGATGTGCGATGGTGCTGGTACTGGCCTTATATTGGCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAA
TAGAAAACGAGTCGTCTTCCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGTG
GCAGCAGGATCAGTAGCACGCAGGGGGGACCCGATCGATCCCCG
Found at i:5622 original size:26 final size:26
Alignment explanation
Indices: 5583--5659 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
5573 TGGGTTCGCT
*
5583 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
5609 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATTCCCAGTC
*
5635 TAAGCATACGGAGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATTCCCAGT
5660 GTAAGATCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:7935 original size:898 final size:895
Alignment explanation
Indices: 5609--15846 Score: 6560
Period size: 897 Copynumber: 11.3 Consensus size: 895
5599 ATTCCCAGTC
*
5609 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACTG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * * * **
5674 GACCGAGGGTTGCGGCTGCACATGCTGGGCTGGGGCATGTACTGGTGCC-TTTTTTTTTTCGCTC
66 GACCGAGGGTTACGG-TGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC
* * * *
5738 GGGGCACCAT---C---G--T---CAGAGAACCTAACCAACGTCATTGGGGTTCCGAAGATTGGG
130 GGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGG
* * *
5792 GGATGAAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCC
195 GG-GGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
5857 TTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
5922 CTGCCAATAGCCATTAAAGTGAT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
324 CTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * * * *
5986 ACACTTCCAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAGAAAAATAAAAAGGATCACGTCTAC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT-ACAAGGATCATGTCTAC
* * * *
6051 CAAGTGCGGGTCCAAAACTCCTTCCGAAAAAATTTTT-AAAAACT-TTGGAACCGTAAAAAGTTT
452 CAAGTGTGGGGCCAAAACTCCTTCTG-AAAAATTTTTAAAAAAATCTT-GAACCGTAAAAAGTTT
* *
6114 CAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
515 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGA
* * * *
6179 CCACTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGGAATAAATATGAGGATGTGCCTA
580 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTA
* * *
6244 AACCCACCTACCAACCTATCGATCCACGACTTGCGCTTCCCACCTCTT-TGGCCGACGTAGTGCC
645 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCT-TTCTGGCCGACGTAGTGCC
* *
6308 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTGGA
709 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * * * * * *
6373 TCGGACTAAGGGTTGCAGCAGCAGGGTCGGCAGCATGCAGGGGGTGACCCGGCCGATCCTC-GCT
774 CCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGG-GACCCGACCGATCCCCGGCT
* * * * *
6437 TGCACATCTTGCCCCTCTGGTCGATTGAGCGCCCGCACGCTCGTTTCGTGGATTGACT
838 TGCACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
** * * *
6495 TAGGCATACGGAGTTCAAACCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCAAACCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
** * * * *
6560 GATTGAGGGTTGCGGGTGCACATGTTGGGCT-GAAACATGTGCTGGTGCCACATTTTTTTTCGCT
66 GACCGAGGGTTAC-GGTGCACATGCTGGGCTCG-AGCATGTGCTGGTGCCGCATTTTTTTTCGCT
* * *
6624 -AGGGCACCATCGCCGAAGCATCGCCGGAGAACC-AGACCGGCGGCATTGGGGTTCCAACGATT-
129 CGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTA-ACCGACGGCATTGGGGTTCCGACGATTG
* *
6686 GGGGGGTGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
193 GGGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
6750 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
6815 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * *
6880 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCGTACCAACAAAAATACAAGGATCATGTCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
* *
6945 AAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTCAAAAAAATCTTGAACCGTAAAAAGTTTCAA
453 AAGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAA
*
7010 AAATCATGAAAAATAGAAAATGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCA
518 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCA
*
7075 TTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAAC
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAAC
* * * *
7140 CCACTTGCCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGTGCCCGCC
648 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCC
* ** * *
7205 CGCCCGCTCGTTTTGTTAGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
713 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
* * *
7270 ACCAAGGGTTGCGGCAGCAGGATTGGCAGCATGTAGGGGGCGACCCGACCGATCCCCGGTTTGCA
778 ACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGG-GACCCGACCGATCCCCGGCTTGCA
* * * *
7335 CATCCTGCCCCTTTGGCCGACTGAATGCCTGCACGCTCGTTTCATGGGTTGACT
842 CATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * * *
7389 TGGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCGTTCTCAGGGTAAGATCAGACCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * *
7454 GATCGAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-ATA
66 GACCGAGGGTTAC-GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCT-
* * * * *
7518 CGGGGCACCATCACCGGAGCATTGCCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATTGG
129 CGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATT-G
** *
7583 GGGGGCGAGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTCGTACTT-GCCCTTATATTGGCC
193 GGGGG-GAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
7647 CTCC-ATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
257 C-CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
** *
7711 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGGTTTTTCAAATGGTCACGAAATCCT
321 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
* *
7776 GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCATGTCTA
386 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
* * * ** * *
7841 GCAAATTTGGGGCTGAAACTCCTTTTGAAAAATTTTTAAAAAAATCCTGAACCGTAAAAAGTTTC
451 CCAAGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTC
* *
7906 AAAAATCCTGAAAAAGAGAAAACGAGTCGTCTTG-TCATGAAACTTCACATGAAGGCTTAAGGGA
516 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCT-ATGAAACTTCACATGAAGGCTTAAGGGA
* * *
7970 CCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
580 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTA
* * * * *
8035 AACCCACCTACCACCCTATCGATCCATGTCTTGCGCATCCCGCCTCTCTAGCTGACGTAGTGCCC
645 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCC
* * * * *
8100 ACCCGTCCACTCGTTTCGTCGGTTGGATTAGGCATACGG-GTTCATTCCCAGTCTAAGATTAGAC
710 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * * * *
8164 TAGACCAAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGGGGAGAAACCGA-CGAATCCCCGGCT
775 CAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGG-GGACCCGACCG-ATCCCCGGCT
* * * *
8228 TGCGCATCCTGCCCCTCTGGCCGGCT-AAGCGCCCGCACGCTCATTTTGTGGGTTGACT
838 TGCACATCCTGCCCCTCTGGCCGACTGAA-CGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
8286 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGATTTCATTCCCAGTGTAAGATCGGATCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * *
8351 GACCGAGGGTTACGAGTGCCCATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTTTTCGCTC
66 GACCGAGGGTTACG-GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC
* * *
8416 GGGGCGCCATCGCCAAAGCATCGTCGGAGAACCTAACCGACGAG-ATTGGGGTTCCGACGATTGG
130 GGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACG-GCATTGGGGTTCCGACGATTGG
*
8480 GGGGGACGGGGGGTGTGCACACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
194 GGGGGA-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
8545 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTAGTAGCTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTT
* * *
8610 TGCTGCCAGTAGCCATTAAAGTGTCTGAAGGCTTAAGGGACCACTATATGAATTTGC-AA--GCC
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAA---AT-GGGGA-CACT-T-T---TTT-CAAATGGTC
* * * ** ** * * **** * * ** *
8672 ATAAAA--ATG-GCA-TT-G-GCATGGA-ATAAATATGAAGATGTGCCAAAAT-CCACCTACCAC
376 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT-T-TTTTTGTG-C---ATGCCAACAAAAAT
* ** * * ** * ** ** * ** * *****
8729 GCTATCGATCCACGGCTTGCGCATCCTACCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCTCGT
435 AC-AAGGAT-CA-TG--T-C-TA-CC-AAGTGTGGGGCC-A-AAACT--CCTTCTGAAAAAT--T
**** * ** * *** **** ** * * *
8794 TTT-GTCGATTGGCTT-AGGCATACGGAG-TTC-ATTCCCAGTCTAAGATCGGACTGAACCGAG-
485 TTTAAAAAAAT--CTTGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAAT-AGA---AAACGAGT
* ** * *** *** *** ** * *
8854 GGT-TGTGGC-A-GCAAGATCGACAGCATGCACGGGGGACCCGACCGA-TCCCTG-GCTTGCGCA
543 CGTCT-T-GCTATG-AA-A-CTTCA-CATG-AAGGCTTAAGGGACC-ATTGTATGAATTTAC-AA
* ***** * * * ***** * * * * * * **
8914 TCC-TGCCCCTCTGGCCTGCTGAGCGCTCGCACGCTCGTTTTATG-GGTTGACT-TAGGCA--TA
599 GCCAT--AAAAATGGCAT--TG-GC-AT-GGA-AAAAATATGAAGATG-TGCCTAAACCCACCTA
* * * ** * *** ** * *
8974 CGGA--GT-TC-ATTCC-CTGTC-TAAGCAT-ACGGAGTTCATTCCCTG-TGTAAGAT--CAGAC
655 C-CACCCTATCGA-TCCAC-GACTTGCGCATCCCGCCTTTC-TGGCC-GACGT-AG-TGCCCG-C
* * *** * * ** * * ** ***
9029 CGGACCGAGGGTTACGGGCGCACAT-ACTT-GGC-T-CGG-G--CATGCGCTGGTGGCTCATTTT
712 CCGCCCGCTCGTTTC-GTCG--GTTGGCTTAGGCATACGGAGTTCATTC-CCAGT--CT-AAGAT
**** * ** * * * * * *
9087 TTTTTC-G-CC-CGGG--GCACCATC--GCT-GG-AGCATTGC-CGGAGAACCTGACCGA----C
770 TGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCA-TGCAGGGGGGACCCGACCGATCCCC
*** * *** ** ** *** *** *** * *
9138 GGCATTG-GGGTTCTAGCGATTGGGGGGGCGGGGGGGTGTGCACACAT-GATGTGCGATGGGTGC
834 GGC-TTGCACATCCT-GCCCCTCTGGCCGACTGAACGCCCGCACGC-TCG-T-TTCG-TGGGT--
9201 TAGTACT
891 T-G-ACT
* *** * * * * * ** ** ** **
9208 T-GGCCCTTATATTGG-CCCCCTATCCCTCATC-AAACCT-CAAGAACTCACACCCCCTCAAAGA
1 TAGG--C--ATA-CGGAGTTCAT-TCCC-AATCTAAGCATAC-GGAGTTCATTCCCAGTGTAAGA
* *** *** * * * * * ** ** * * * * *
9269 GCA-TTTGAGATTTTACAGGTT-TGCTGC-CA-G-TAGCCATTAAAGTGTTTGAAATGGGGACAC
58 TCAGACCG-GA-CCGA-GGGTTACGGTGCACATGCTGGGC--TCGAGCATGTG--CTGGTGCCGC
* * ** * * * *******
9329 -TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG-A-CTTTTTTTTTGCAT
116 ATTTTTT----T--TCGC----T-CGGGGCAC--C-A-----TCGCCGAAGCATCGCCGGAG-A-
* *** * *** * * *** ****** * * * *
9391 ACCAAAAAAATACGAGGA-TCACGTCTACC-AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTT
160 ACC--TAACCGACG-GCATTGGGGT-T-CCGACGATTGGGG-GGGAGGGGGGTGTGCACACA--T
* * *** *** *** * * * **** * * *
9454 AAAAAAAATCT-CGAACCGTGAAAAGT--TTGGAATATTGAAAAATAGAAAACGA---GTCATCT
217 ------GATGTGCGATGGGTG-CTGGTACTTGG-CCCTT--ATATTGGCCCCCTATCCCTCATCA
** **** * * * *
9513 TGCCAT-GA-AACTTCACATGGAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAAT
272 AACC-TCGAGAAC-TCACA--CCCCCTTAA-AGAGCATTTG-A-GATTTTAC-AG--GT-----T
* * ** * *** ** *
9575 GGCATTGGC-GTGGCAGAAATATGAAGATGTGCCT-AAACCTGCCTACCACCCTATCGATCCACG
322 TGC--TGCCAGT---AGCCAT-T-AA-A-GTGTCTGAAA--TGGGGA-CA--CT-T-TTTTCA--
* * ** ** * * * ******* * * * ** *
9638 ACTTG-CACATCCCATCTCTCTGGCCGACATAGTGCCCGCCCCCCG-CTTATTTTGTCGGTTGGC
369 AATGGTCACA----AAATC-CTGTAC-ACTTCGAG-TTTTTAGCTGAATTTTTTTGT-GCATGCC
* *** * * * ** * *
9701 -ATAGGCATAC-AGAGTTCAT-TC--CC-AGTGTAAGATTGGACCAGACTGAAGGTTGTGGCAGC
426 AACAAAAATACAAG-GATCATGTCTACCAAGTGT--G---GGGCCA-A---AA-CTCCT-TCTG-
** * ***** * * **** * * *** * *
9760 AAGATCGACAGCATGTAGGGGGGA-CCTG-ACTGATCCCCGACTTGTCCATCCTGCCCCTTTGGC
478 AA-A---A-A-TTTTTA-AAAAAATCTTGAACCG-T-AAAAAGTT-TCAAAAAT----C-AT-GA
**** *** * * * **** * * * ** **
9823 TGGCT-GAGCGCCAGCACG-CTTG-TTTCGTGGGTTGACAT--AGGCATACGGAGTTCA-T-TCC
527 AAAATAGAAAACGAG-TCGTCTTGCTAT-GAAACTTCACATGAAGGCTTAAGG-GACCATTGTAT
* * *** * ** * * * * *
9881 CAATCT--AAG-CATACGGA-GTTCATTCCCAGTGTAAGACCGGACCAA-ACTGAGGGT-TACGG
589 GAATTTACAAGCCATAAAAATG-GCATTGGCA-TGGAA-A----A--AATA-TGAAGATGTGC-C
* ** * * * * *
9940 TAGTAGGATCGACAGCACGTAGGGGGGACCCGACCGATCTC-CGGCTTGCGCATCCCGTCTCTCT
643 TA--A--A-C--C--CACCTA----CCACCCTATCGATC-CACGACTTGCGCATCCCGCCTTTCT
* * ** * * * * *
10004 GGCCGGCATAGTGCCCGCCCATCTGCTCATTTCATCGGTTGGCTTAAGCATATGGAGTTCATTCC
694 GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * * ** ** *
10069 CAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGTAGGA-CTGATAGCGCGTAAGGGGGGACC
759 CAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGGATC-GGCAGCATG-CAGGGGGGACC
** * ** * *
10133 CGGTCGATCCCCAGCTTGTGCAACCTGCCCC-CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGT
822 CGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGT
10197 GGGTTGACT
887 GGGTTGACT
* * *
10206 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATGTAAGATCAGACCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * * *
10271 GACCAAGGGTTACGGTGCACATACTGGGCTC-AGGCATGTGCTGGTGCCGTATTTTTTTTTCGTT
66 GACCGAGGGTTACGGTGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCA-TTTTTTTTCGCT
* * * * * * *
10335 CGGGGCACCATCGCCGGAGCATAGTCGGAGAACCTGACCGACTGCGA-TGGGGTTTCGACAATTG
129 CGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACGGC-ATTGGGGTTCCGACGATTG
* *
10399 AGGGGGTAGGGGGTGCGTG--CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
193 -GGGGGGAGGGGG-GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
10462 CCCCTATCCCTCATCGAACCTC---AA--GA-ACCCCCTTAAATAGCATTT-AGATTTTACAGGT
256 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
10520 TTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
321 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
* * * * * ***
10585 GTACACTTTGACTTTTTAGCTGAATTATTTTATGCATGCAAACAAAAATACAAGGATCGCATCTA
386 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA
* * * * ** ** *
10650 CCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAAATCCCGAACTATAAAAAGTTTT
451 CCAAGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTC
* * *
10715 AAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
516 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGAC
* * * * *
10780 CACTGTATGACTTTACAAGCCATAAAAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAA
581 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAA
* * * * * * * **
10845 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGTCGGCGTAGTGCTTG
646 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCG
* * * * **
10910 CCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
** ** * * * * ** *
10975 AGACTGAGGGTTATGGCAGCAGGATCGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGC
776 AGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
11040 GCATCCTGCCCCTCTAGCCAATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
841 ACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * ** * *
11095 TAGGCATACAGAGTTTATTCCTAGTCTAAGCATATAGAGTTCATTCCCAGTGTAAGATCGGACCA
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * * * *
11160 GACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATATGCTGGTGCCGTATTTTTTTTTGC-C
66 GACCGAGGGTTAC-GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC
** * * * *
11224 TGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATTGG
130 -GGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGG
* *
11289 AGGGGCG-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
194 -GGGG-GAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
11353 CCCTATGCCTCATCAAACCTCGAGAACTCAAAACCCCTTAAAGAGCATTTGAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
11418 TGCTGCCAATAGCCATTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
** * * ** *
11483 TACACTTATATTTTTTAGCTGAATTTTTTTTTTAATGCCAAAAAAAATACAAGGATCATGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
* * * ** * ** *
11548 CAAGTTTGGGGCCAAAACTTCTTCTAAAAAAAATTAAAAAAAATCCCGAACTGTAAAAAGTTTCA
452 CAAGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCA
*
11613 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
517 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACC
* * * *
11678 ATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGACGATGTGCCTAAA
582 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAA
* * * * * * * * * *
11743 CCCACTTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTCGCCGATGTAGAGCCTGC
647 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGC
* * * ** ** *
11808 CCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCATAGTCTAAGATCAGATCA
712 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
* ** * * * * * * *
11873 GACTAAGGGTTGTAGTAGCAAGATTGACAGCAAGCAAGGGGGGACCC-ATTCGATCCCTGGCTTG
777 GACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGC-AGGGGGGACCCGA-CCGATCCCCGGCTTG
* * * * * *
11937 CGCATCCTGCCCCTCTGGCCAATTGAGCGCTCGCACGCTCATTTCGTGGGTTGACT
840 CACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
*
11993 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAG--T--G--TA---AG
* ** * *
12058 TTCATTCCCAGTGTATGATCGGACCGGACTGAGGGTTGTGAGTACACATGCTGGGCTAG-GACAT
57 ---A-T--C--------A---GACCGGACCGAGGGTTACG-GTGCACATGCTGGGCTCGAG-CAT
** ** * * ** * * * * *
12122 GCACTGGTGTTGCATTTTTTTTCGCCCGAGGCACCATCATCGGAGCATCACCGAAGAACCTGATC
103 GTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACC
* * * * * * *
12187 GGCGACATTAGGGTTCCGATGATTGGGGGGGCGGGGGGTGTGCGCACTTGATGTGCGATGGGTGC
168 GACGGCATTGGGGTTCCGACGATTGGGGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGC
** *
12252 TGGTACATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCTTTA
233 TGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
12317 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTGAAATGGGGACACT
297 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
12382 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
362 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
12447 ACAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAATACTCCTTCTGAAAAAATTTTAAAA
427 ACAAAAATACAAGGATCATGTCTACCAAGTGTGGGGCCAAAACTCCTTCTG-AAAAATTTTTAAA
** ** * * * *
12512 AAAATCCCGAATTGTAAAAAGTTTCAAAAATCGTAAAAAAGAGAAAACGAGTCGTCTTGCCATGA
491 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGA
12577 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
556 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * * *
12642 GGAAGATATATGAAGATGTGCCTAAACCTACCTACCACCCTACCGATCCATGGCTTGCGCATCCC
621 GGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * *
12707 GCCTCTC-GGCC-AGTGTAGTGCCCG-CCGACCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGG
686 GCCTTTCTGGCCGA-CGTAGTGCCCGCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *** * * * *
12769 AGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTCATGGCAGCAAGATTGGCAGCACGCTG
749 AGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGC-A
* * * * *
12834 GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCACTCTGGCCGGA-TGAGCACCTGCACG
813 GGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCC-GACTGAACGCCCGCACG
*
12898 CTCATTTCGTGGGTTGACT
877 CTCGTTTCGTGGGTTGACT
* * * * * *
12917 TAGGCTTGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCAGACTG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* * * * * *
12982 AACTGAGGGTTGCAGGTGCACATGCTGGGCTTG-GCCATGTGCTGGTGCCGCATTTTTATTCACT
66 GACCGAGGGTTAC-GGTGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTTTTCGCT
* * * *
13046 CAGGGCACCATCACCTG-AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTG
129 CGGGGCACCATCGCC-GAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTG
* * * **
13110 GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTCAGCCCTTATATTGGCCC
193 GGGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
13175 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
258 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
13240 GCTACC-GATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCCTG
323 GCTGCCAG-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
* **
13304 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
* * * * * * ** * **
13369 CAAGTTTGGGGCCAAAAGTCTTTTTGAAAAAATTTAAAAAAAATCCAGAACTGTAAAAAGTTTTT
452 CAAGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCA
* * * * *
13434 GAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACC
517 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACC
** *
13499 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTCAAAATATAAAGATGTGCCTAAA
582 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAA
* * * * * **
13564 CCCACCTACCACCCTGTAGATCCACGGCTTGCGCAACCCGCCTCTCTAGG-CGGTGTAGTGCCCG
647 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCT-GGCCGACGTAGTGCCCG
* * ** *
13628 CCCGCCCGCTCGTTTCATCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAATC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
* ** ** * * * *
13693 GGACTGAGGGTTATGGTAGTAGGATCGAAAGC-GCAT--AGGGGGGACCC-AGTCGATCCCCAGC
776 AGACCAAGGGTTGCGGCAGCAGGATCG---GCAGCATGCAGGGGGGACCCGA-CCGATCCCCGGC
* * * * * * * *
13754 TTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCTTTTCATGGGTTTACT
837 TTGCACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
* * ** * *
13813 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTGCCAGTGTAAGATTGGATCA
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
** * * ** * * * *
13878 GATTGAGGGTTGCAGGTGCACATGTTGGGCTCGAGCATGTGCTGGTGCTACAATTGTTTTCACCC
66 GACCGAGGGTTAC-GGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC
* * * *** * * * * *
13943 AGGGCACCATCGTCGGAGCATCATTGGAGAACCTGACCTG-CGGTATGGGGGTTTCAACGATTGG
130 GGGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACC-GACGGCATTGGGGTTCCGACGATTGG
* * *
14007 GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCC
194 GGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
14072 CTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
14137 CCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTTCAAATGGACACAAAATCCTGT
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCCTGT
* * * * * **
14202 ACACTTTGAGTTTTTAGCTGAAATTTTTTATGCATGCCAATAAAAATACAATGATCACCTCTACC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
* * * * *
14267 AAGTTTGGGGCCAAAACGCCTTCTGAAAAAAATTTT-AAAAAATCTTGAACTGTAAAAAGTTACA
453 AAGTGTGGGGCCAAAACTCCTTCTG-AAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCA
* * * *
14331 AAAATCATGAAAAATAGACAACGAGTCGTCTTGCCATGAAACTTCACATCAAGGCTTAAGGGACA
517 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACC
* * *
14396 ATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATTGTGCCTAA
582 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGA-TGTGCCTAA
* * * * * *
14461 ACCCACCTACCAACCTATCGATCCAC-AGCTTTCGCATCCCGCCTCTCTAGCCGACATAGTGTCC
646 ACCCACCTACCACCCTATCGATCCACGA-CTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCC
* ** * * * *
14525 GCCCACATGCTCGTTTCGTCCGTTGGCTTAGGCATATGGAGTTCGTTCCCAGTCTAAG-TTAAGA
710 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GGA
* * * * *
14589 TCAAACCAAGGGTTGTGGCAGCAGGATC-G--GTAT-C--------CCCGA-C--T----TG--T
774 CCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGACCCGACCGATCCCCGGCTT
* * * *
14633 G--CATCCTGCCCCTCTGGCCGACTGAGCACCCGCATGCTCATTTCGTGGGTTGACT
839 GCACATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * * *
14688 TAGGCATACGAAATTCATTCCCAGTCTAGGCATACGAAGTTCATTCCCAGTGAAAGATCAAACCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* ** ** * * * * * *
14753 GGCCGAGGGTTGTGAGTGCACATGCTGGAATCGGGCACGTGCAGGTGTCACA-TTTTTTTCGCCC
66 GACCGAGGGTTACG-GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC
* * * * * ** * *
14817 GTGGCACCATCACC-AGAGCATCGCCGAAAAACCTGACCGGTGACATTAGGGTTCCGACGATT--
130 GGGGCACCATCGCCGA-AGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGG
*
14879 ----G-GGGGGGTTTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
194 GGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
14939 CTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
15004 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * ** *
15069 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACAAAGATCACCTCCACCA
389 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
* * * * * * *
15133 AGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAAATCCTGAATCGTAAAAAGTTACAAA
454 AGTGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAA
** * * * *
15198 AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATCAAGGCTGAAGGAACCAT
519 AATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCAT
*
15263 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACC
* * * *
15328 CACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTT-TGGCCGGCGTAGTGCCCGCC
649 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCT-TTCTGGCCGACGTAGTGCCCGCC
* * * * * * * ** * *
15392 CACCTGTTCATTTCATCGGTTGGCTAAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAA
713 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAG
** * * * * ** * * * **
15457 ACTGAGGGTTACGGTAGTAGGATTGGCAGCACACAGGGGGGACCCGACCAAT-CTCAGCTTGTGC
778 ACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGACCCGACCGATCCCCGGCTTGCAC
* * * *
15521 ATCCTGCCCATCTGGCCGACTGATCGCCCGCATGCTCGTTTCGTGGATTGACT
843 ATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
* ** * * * * *
15574 TAGGCACACAAAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATGAAAGATCAGACCG
1 TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
* ** * * * *
15639 GATCGAGGGTTGTGGGTGCACATGCTGGGATCGGGCATGTGCAGGTGCCGTATTTTTTTTTCGCT
66 GACCGAGGGTT-ACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCT
* * * * * *
15704 TGGGGCACCATCACCGGAA-CATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATT-
129 CGGGGCACCATCGCC-GAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTG
* *
15767 -------GGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCC
193 GGGGGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
15825 CCTATCCCTCATCAAACCTCGA
258 CCTATCCCTCATCAAACCTCGA
15847 TTAAGACTTG
Statistics
Matches: 7332, Mismatches: 1522, Indels: 995
0.74 0.15 0.10
Matches are distributed among these distances:
864 145 0.02
865 184 0.03
866 64 0.01
867 154 0.02
868 2 0.00
873 1 0.00
874 53 0.01
875 138 0.02
876 5 0.00
877 3 0.00
879 2 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 2 0.00
886 257 0.04
887 92 0.01
888 104 0.01
889 304 0.04
890 99 0.01
892 11 0.00
893 357 0.05
894 372 0.05
895 67 0.01
896 646 0.09
897 1391 0.19
898 916 0.12
899 43 0.01
900 8 0.00
901 7 0.00
902 17 0.00
903 11 0.00
904 29 0.00
905 12 0.00
906 17 0.00
907 7 0.00
908 5 0.00
909 11 0.00
910 17 0.00
911 10 0.00
912 6 0.00
913 8 0.00
914 8 0.00
915 19 0.00
916 3 0.00
917 10 0.00
918 25 0.00
919 23 0.00
920 11 0.00
921 11 0.00
922 14 0.00
923 59 0.01
924 558 0.08
925 261 0.04
926 66 0.01
927 39 0.01
928 19 0.00
929 11 0.00
930 7 0.00
931 9 0.00
932 14 0.00
933 1 0.00
934 2 0.00
936 3 0.00
937 7 0.00
938 5 0.00
939 5 0.00
940 3 0.00
941 1 0.00
942 4 0.00
943 4 0.00
944 5 0.00
945 8 0.00
946 3 0.00
947 10 0.00
948 16 0.00
949 3 0.00
950 1 0.00
951 1 0.00
953 5 0.00
954 25 0.00
955 10 0.00
956 14 0.00
957 18 0.00
958 8 0.00
959 1 0.00
960 2 0.00
962 6 0.00
963 7 0.00
964 9 0.00
965 14 0.00
966 2 0.00
967 5 0.00
968 1 0.00
969 10 0.00
970 7 0.00
971 9 0.00
972 21 0.00
973 22 0.00
974 6 0.00
975 15 0.00
976 3 0.00
977 5 0.00
978 11 0.00
979 9 0.00
980 10 0.00
981 9 0.00
982 4 0.00
983 17 0.00
984 5 0.00
985 7 0.00
986 2 0.00
987 4 0.00
988 4 0.00
990 4 0.00
991 3 0.00
992 14 0.00
993 27 0.00
994 59 0.01
995 13 0.00
996 9 0.00
997 5 0.00
998 8 0.00
999 3 0.00
1000 2 0.00
1001 2 0.00
1002 8 0.00
1003 13 0.00
1004 2 0.00
1005 12 0.00
1006 5 0.00
1007 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCG
GACCGAGGGTTACGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTCG
GGGCACCATCGCCGAAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTCCGACGATTGGGG
GGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
TGTGGGGCCAAAACTCCTTCTGAAAAATTTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACATGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
AAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGACCCGACCGATCCCCGGCTTGCACATC
CTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACT
Found at i:9005 original size:26 final size:26
Alignment explanation
Indices: 8969--9021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8959 GTTGACTTAG
8969 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
*
8995 GCATACGGAGTTCATTCCCTGTGTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
9021 G
1 G
9022 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:9294 original size:680 final size:680
Alignment explanation
Indices: 7955--9318 Score: 1979
Period size: 680 Copynumber: 2.0 Consensus size: 680
7945 AAACTTCACA
* * * *
7955 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGGTAGAAAT
1 TGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAAT
* * * *
8020 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGTCTTGCGCATCCCGCCTCTCTA
66 ATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTA
* * *
8085 GCTGACGTAGTGCCCACCCGTCCACTCGTTTCGTCGGTTGGATTAGGCATACGGGTTCATTCCCA
131 GCCGACGTAGTGCCCACCCGCCCACTCGTTTCGTCGATTGGATTAGGCATACGGGTTCATTCCCA
* * **
8150 GTCTAAGATTAGACTAGACCAAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGGGGAGAAACCGA
196 GTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGAGAAACCGA
*
8215 CGAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTTGTGGG
261 CGAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTTATGGG
*
8280 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGATTTCATTCCCAGTGTAAGATC
326 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * * * *
8345 GGATCGGACCGAGGGTTACGAGTGCCCATGCTGGGCTCGAGCATGTGTTGGTGTCGCATTTTTTT
391 AGACCGGACCGAGGGTTACGAGCGCACATACTGGGCTCGAGCATGCGCTGGTGGCGCATTTTTTT
* * * *
8410 TCGCTCGGGGCGCCATCGCCAAAGCATCGTCGGAGAACCTAACCGACGAGATTGGGGTTCCGACG
456 TCGCCCGGGGCACCATCGCCAAAGCATCGCCGGAGAACCTAACCGACGAGATTGGGGTTCAGACG
* *
8475 ATTGGGGGGGACGGGGGGTGTGCACACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
521 ATTGGGGGGGACGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
* * *
8540 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTAGT
586 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTAGC
8605 AGCTTTGCTGCCAGTAGCCATTAAAGTGTC
651 AGCTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
8635 TGAAGGCTTAAGGGACCACTATATGAATTTGCAAGCCATAAAAATGGCATTGGCATGGAATAAAT
1 TGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAAT
* * * * *
8700 ATGAAGATGTGCCAAAATCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCTACCTCTTTG
66 ATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTA
* * * *
8765 GCCGACGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
131 GCCGACGTAGTGCCCACCCGCCCACTCGTTTCGTCGATTGGATTAGGCATACGG-GTTCATTCCC
* * * *
8830 AGTCTAAGATCGGACT-GAACCGAGGGTTGTGGCAGCAAGATCGACAGCATGCACGGGG-G-ACC
195 AGTCTAAGATCAGACTAG-ACCAAGGGTTGTGGCAGCAAGATCGACAGCACGCA-GGGGAGAAAC
* * * * *
8892 CGACCG-ATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCTGCTGAGCGCTCGCACGCTCGTTTTA
258 CGA-CGAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTTA
** *
8956 TGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCTGTGTAA
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAA
* * * *
9021 GATCAGACCGGACCGAGGGTTACGGGCGCACATACTTGGCTCGGGCATGCGCTGGTGGCTCATTT
387 GATCAGACCGGACCGAGGGTTACGAGCGCACATACTGGGCTCGAGCATGCGCTGGTGGCGCA-TT
*** * *
9086 TTTTTTCGCCCGGGGCACCATCGCTGGAGCATTGCCGGAGAACCTGACCGACG-GCATTGGGGTT
451 TTTTTTCGCCCGGGGCACCATCGCCAAAGCATCGCCGGAGAACCTAACCGACGAG-ATTGGGGTT
9150 CTAG-CGATTGGGGGGG-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCC
515 C-AGACGATTGGGGGGGAC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCC
*
9213 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAG
578 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAG
* *
9278 ATTTTA-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
643 ATTTTAGCAGCTTTGCTGCCAGTAGCCATTAAAGTGTC
9315 TGAA
1 TGAA
9319 ATGGGGACAC
Statistics
Matches: 607, Mismatches: 69, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
680 365 0.60
681 237 0.39
682 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (680 bp):
TGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAAT
ATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTA
GCCGACGTAGTGCCCACCCGCCCACTCGTTTCGTCGATTGGATTAGGCATACGGGTTCATTCCCA
GTCTAAGATCAGACTAGACCAAGGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGAGAAACCGA
CGAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTTATGGG
TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
AGACCGGACCGAGGGTTACGAGCGCACATACTGGGCTCGAGCATGCGCTGGTGGCGCATTTTTTT
TCGCCCGGGGCACCATCGCCAAAGCATCGCCGGAGAACCTAACCGACGAGATTGGGGTTCAGACG
ATTGGGGGGGACGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTAGC
AGCTTTGCTGCCAGTAGCCATTAAAGTGTC
Found at i:10234 original size:158 final size:161
Alignment explanation
Indices: 9886--10235 Score: 390
Period size: 162 Copynumber: 2.2 Consensus size: 161
9876 ATTCCCAATC
* * *
9886 TAAGCATACGGAGTTCATTCCCAGTGTAAGACCGGACCAAACTGAGGGTTACGGTAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACTGAGGGTTACAGTAGTAGGATCG
* * * * * * *
9951 ACAGCACGTAGGGGGGACCCGACCGATCTCCGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
66 ACAGCACGTAGGGGGGACCCGACCGATCCCCAGCTTGCGCAACCCGTCCCCCTGGCCGACATAGC
*
10016 GCCCGCCCATCTGCTCATTTCATCGGTTGGCT
131 GCCCG-CCATCTGCTCATTTCATCGGTTGACT
* * *
10048 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAA-TCGAGGGTTGCAGTAGTAGGA-C
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACT-GAGGGTTACAGTAGTAGGATC
* * ** * *
10111 TGATAGCGCGTAAGGGGGGACCCGGTCGATCCCCAGCTTGTGCAACCTG-CCCCCTGGCCGAC-T
65 -GACAGCACGT-AGGGGGGACCCGACCGATCCCCAGCTTGCGCAACCCGTCCCCCTGGCCGACAT
* * *
10174 GAGCGCCCG-CA-C-GCTCGTTTCGTGGGTTGACT
128 -AGCGCCCGCCATCTGCTCATTTCATCGGTTGACT
*
10206 TAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG
10236 CATACAGAGT
Statistics
Matches: 159, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
158 44 0.28
159 1 0.01
160 2 0.01
161 3 0.02
162 79 0.50
163 30 0.19
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (161 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAAACTGAGGGTTACAGTAGTAGGATCG
ACAGCACGTAGGGGGGACCCGACCGATCCCCAGCTTGCGCAACCCGTCCCCCTGGCCGACATAGC
GCCCGCCATCTGCTCATTTCATCGGTTGACT
Found at i:10261 original size:26 final size:26
Alignment explanation
Indices: 10209--10261 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
10199 GTTGACTTAG
* *
10209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
10235 GCATACAGAGTTCATTCCCAATGTAA
1 GCATACAGAGTTCATTCCCAATCTAA
10261 G
1 G
10262 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:11127 original size:26 final size:26
Alignment explanation
Indices: 11098--11150 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
11088 GTTGACTTAG
* *
11098 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
11124 GCATATAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11150 G
1 G
11151 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:11708 original size:897 final size:894
Alignment explanation
Indices: 9981--15846 Score: 7046
Period size: 897 Copynumber: 6.6 Consensus size: 894
9971 GACCGATCTC
* * * * * *
9981 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCATCTGCTCATTTCATCGGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * *** *
10046 CTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCA-AATCGAGGGTTGCAGTAGTAGGA
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTATGGTAGCAGGA
* * * *
10110 -CTGATAGCGCGTAAGGGGGGACCCGGTCGATCCCC-AGCTTGTGCAACCTGCCCC-CTGGCCGA
130 TC-GACAGCACGTAA-GGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGA
* *
10172 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
192 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * *
10237 ATACAGAGTTCATTCCCAATGTAAGATCAGACCGGACCAAGGGTTAC-GGTGCACATACTGGGCT
257 ATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* * * * * *
10301 CAGGCATGTGCTGGTGCCGTATTTTTTTTT-CGTTCGGGGCACCATCGCCGGAGCATAGTCGGAG
322 CGGGCATGTGCTGGTGCCGCATTTTTTTTTGC-CT-GGGGCACCATCACCGGAGCATCGCCGGAG
* * * * ** * *
10365 AACCTGACCGACTGCGA-TGGGGTTTCGACAATTGAGGGGGTAGGGGGTGCGTGCACATGATGTG
385 AACCTGACCGGC-GC-ATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTG
* *
10429 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAA--C--
448 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
* *
10490 -CCCCTTAAATAGCATTT-AGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
513 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
10553 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGACTTTTTAGCTGAATTATTTTAT
578 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* *
10618 GCATG-CAAACAAAAATACAAGGATCGCATCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAA
643 GCATGCCAAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
10682 ATTTAAAAAAAATCCCGAACTATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGTCGTCT
707 ATTTAAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
10747 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGACTTTACAAGCCATAAAAATGGC
772 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
10812 ATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
837 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** *
10870 CGGCTTGCGCATCCTGTCTCTCTAGTCGGCGTAGTGCTTGCCCACCCGCTCGTTTTGTCGGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * *
10935 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTATGGCAGCAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* * *
11000 CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTAGCCAATTGA
131 CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGA
* * * *
11065 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCTAGTCTAAGCATAT
196 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* *
11130 AGAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
261 AGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* * *
11195 CATATGCTGGTGCCGTATTTTTTTTTGCCTGGGGCACCATCATCGGAGCATCGCCGGAGAACCTG
326 CATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
* *
11260 ACCGGCAGCATTGGGGTTCCGACGATTGGAGGGGCGGGGGGGTGTGCGCACATGATGTACGATGG
391 ACCGGC-GCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGG
*
11325 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCAAAACCCC
454 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC-AAACCCC
* *
11390 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAATTGTCTGAAATGGGGAC
518 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * **
11455 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAT-ATTTTTTAGCTGAATTTTTTTTTTAAT
583 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTT-TGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * * *
11519 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTCTAAAAAAAATTA
647 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
*
11584 AAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
712 AAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
11649 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
777 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
11714 CATGGCAGAAATATGACGATGTGCCTAAACCCACTTACCACCCTATCAATCCA
842 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** * * ** *
11767 CGGCTTGCGCATCCTGTCTCTCTCGCCGATGTAGAGCCTGCCCGTCCGCTCGTTTCGTCAGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* ** * * * *
11832 CTTAGGCATACGAAGTTCATTCATAGTCTAAGATCAGATCAGACTAAGGGTTGTAGTAGCAAGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* * * ** * * * *
11897 TGACAGCAAGCAAGGGGGGACCCATTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCAATTG
131 CGACAGCACGTAA-GGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTG
* *
11962 AGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
195 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* *
12027 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTATGATCGGACCGGACTGAGG
260 CAGAGTTCATTCCCAG--T--G--TA---AG---A-T--C--------A---GACCGGACCGAGG
* * * * * ** ** * * *
12092 GTTGTGAGTACACATGCTGGGCTAGGACATGCACTGGTGTTGCATTTTTTTTCGCCCGAGGCACC
299 GTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACC
* * * * * *
12157 ATCATCGGAGCATCACCGAAGAACCTGATCGGCGACATTAGGGTTCCGATGATTGGGGGGGCGGG
364 ATCACCGGAGCATCGCCGGAGAACCTGACCGGCG-CATTGGGGTTCCGACGATTGGGGGGGCGGG
*
12222 GGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACATTGGCCCTTATATTGGCCCCCTATCCCT
428 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCT
** * *
12287 CATCAAACCTTAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
492 CATCAAACCTCGAGAACTCAAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
12352 AGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
556 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGA
* ** *
12417 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGG
621 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
* * *
12482 GCCAATACTCCTTCTGAAAAAATTTTAAAAAAAATCCCGAATTGTAAAAAGTTTCAAAAATCGTA
686 GCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTG
*
12547 AAAAAGAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
750 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
12612 ATTTACAAGCCATAAAAATGGCATTGGCATGGAAGATATATGAAGATGTGCCTAAACCTACCTAC
815 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
12677 CACCCTACCGATCCA
880 CACCCTATCGATCCA
* * * * * * * *
12692 TGGCTTGCGCATCCCGCCTCTC-GGCCAGTGTAGTGCCCGCCGACCCGCTTGTTTTGTCGGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
** * * * * *
12756 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTCATGGCAGCAAGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* * ** ** * *
12821 TGGCAGCACGCTGGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCACTCTGGCCGGA-T
131 CGACAGCACG-TAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC-GACT
* * * * *
12885 GAGCACCTGCACGCTCATTTCGTGGGTTGACTTAGGCTTGCGGAGTTCATTCCCAGTCTAAGCAT
194 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
12950 ACAGAGTTCATTCCCAGTATAAGATCAGACTGAACTGAGGGTTGCAGGTGCACATGCTGGGCTTG
259 ACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG
* * * *
13015 GCCATGTGCTGGTGCCGCA-TTTTTATT-CACTCAGGGCACCATCACCTGAGCATCGCCGGAGAA
324 GGCATGTGCTGGTGCCGCATTTTTTTTTGC-CT-GGGGCACCATCACCGGAGCATCGCCGGAGAA
* *
13078 CCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
387 CCTGACCGGC-GCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
* ** * *
13143 TGGGTGCCGGTACTCAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
451 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AAC
*
13208 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC-GATAGCCATTAAAGTGTCTGAAATGG
515 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATGG
* *
13272 GGACACTTTTTTCAAAAGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
579 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * *
13337 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAGTCTTTTTGAAAAAAT
644 CATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *** *
13402 TTAAAAAAAATCCAGAACTGTAAAAAGTTTTTGAAATCGTGAAAAATAGAAAACGAGTCATCTTG
709 TTAAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
13467 CCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
774 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
13532 TGGCATGGTCA-AAATATAAAGATGTGCCTAAACCCACCTACCACCCTGTAGATCCA
839 TGGCATGG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
13588 CGGCTTGCGCAACCCGCCTCTCTAGGCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTAG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * *
13653 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAATCGGACTGAGGGTTATGGTAGTAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* * * * * * *
13718 CGAAAGCGCATAGGGGGGACCCAGTCGATCCCC-AGCTTGCGCATCCTGCCCCTCTGGCTGGCTG
131 CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGACTG
* * * * * *
13782 AGCGCCCACACGCTCTTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA
195 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* ** * * ** * *
13847 C-GAAGTTCATTGCCAGTGTAAGATTGGATCAGATTGAGGGTTGCAGGTGCACATGTTGGGCTCG
260 CAG-AGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG
* ** * * ** ** ** ***
13911 AGCATGTGCTGGTGCTACAATTGTTTTCACCCAGGGCACCATCGTCGGAGCATCATTGGAGAACC
324 GGCATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCACCGGAGCATCGCCGGAGAACC
* * * * *
13976 TGACCTGCGGTATGGGGGTTTCAACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
389 TGACCGGC-GCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
* *
14041 GGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
453 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCC
* *
14106 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
518 -TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
14171 CATTTTTTTTCAAATGGACACAAAATCCTGTACACTTTGAGTTTTTAGCTGAAATTTTTTATGCA
582 CA-CTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
14236 TGCCAATAAAAATACAATGATCACCTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAAATT
646 TGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATT
* ** * * *
14301 T-TAAAAAATCTTGAACTGTAAAAAGTTACAAAAATCATGAAAAATAGACAACGAGTCGTCTTGC
710 TAAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
14365 CATGAAACTTCACATCAAGGCTTAAGGGACAATTATATGAATTTACAAGCCATAAAAATGGCATT
775 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
14430 GGCATGGCAGAAATATGAAGATTGTGCCTAAACCCACCTACCAACCTATCGATCCA
840 GGCATGGCAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * ** *
14486 CAGCTTTCGCATCCCGCCTCTCTAGCCGACATAGTGTCCGCCCACATGCTCGTTTCGTCCGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * * **
14551 CTTAGGCATATGGAGTTCGTTCCCAGTCTAAGTTAAGATCAAACCAAGGG-T-T-GT-----G--
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* *
14606 -G-CAG--C---A---GGA-TCGGT--ATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGACTGA
131 CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGA
* * * *
14658 GCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATAC-GAAATTCATTCCCAGTCTAGGCATA
196 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATA
* * * * * **
14722 C-GAAGTTCATTCCCAGTGAAAGATCAAACCGGGCCGAGGGTTGTGAGTGCACATGCTGGAATCG
260 CAG-AGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCG
* * * * * * * * * *
14786 GGCACGTGCAGGTGTCACA-TTTTTTTCGCCCGTGGCACCATCACCAGAGCATCGCCGAAAAACC
324 GGCATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCACCGGAGCATCGCCGGAGAACC
* * * *
14850 TGACCGGTGACATTAGGGTTCCGACGATT------G-GGGGGGTTTGCACACATGATGTGCGATG
389 TGACCGGCG-CATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
* *
14908 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCC
453 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCC
*
14973 CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
517 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
15038 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
582 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * * *
15103 GCC-AACAAAATACAAAGATCACCTCCACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTT
647 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTA
* * *
15167 AAAAAAATCCTGAA-TCGTAAAAAGTTACAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
712 AAAAAAATCCCGAACT-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
15231 ATGAAACTTCACATCAAGGCTGAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
776 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
15296 GCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCA
841 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
15350 CGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCACCTGTTCATTTCATCGGTTGG
1 CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
* * * * *
15415 CTAAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACTGAGGGTTACGGTAGTAGGAT
66 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
* * ** * ** * * * * *
15480 TGGCAGCACACAGGGGGGACCCGACCAATCTCAG-CTTGTGCATCCTGCCCATCTGGCCGACTGA
131 CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGA
* * * * * *
15544 TCGCCCGCATGCTCGTTTCGTGGATTGACTTAGGCACACAAAGTTCATTCCCAGTCTAAGCATA-
196 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
15608 TGAAGTTCATTCCCAATGAAAGATCAGACCGGATCGAGGGTTGTGGGTGCACATGCTGGGATCGG
261 AG-AGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGG
* * * * *
15673 GCATGTGCAGGTGCCGTATTTTTTTTTCGCTTGGGGCACCATCACCGGAACATCACCGGAGAACC
325 GCATGTGCTGGTGCCGCATTTTTTTTT-GCCTGGGGCACCATCACCGGAGCATCGCCGGAGAACC
* * *
15738 TGACCGACGACATTGGGGTTCCGATGATT--------GGGGGGTGTGCACACATGATGTGCGATG
389 TGACCGGCG-CATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATG
* *
15795 GGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
453 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
15847 TTAAGACTTG
Statistics
Matches: 4309, Mismatches: 566, Indels: 206
0.85 0.11 0.04
Matches are distributed among these distances:
864 138 0.03
865 183 0.04
866 62 0.01
867 148 0.03
868 5 0.00
872 1 0.00
873 1 0.00
874 54 0.01
875 149 0.03
876 4 0.00
877 3 0.00
878 4 0.00
884 4 0.00
885 2 0.00
886 158 0.04
887 89 0.02
888 90 0.02
889 281 0.07
890 125 0.03
891 1 0.00
892 1 0.00
895 8 0.00
896 575 0.13
897 1021 0.24
898 401 0.09
899 1 0.00
900 1 0.00
901 1 0.00
902 1 0.00
904 2 0.00
907 2 0.00
909 1 0.00
910 1 0.00
911 2 0.00
912 1 0.00
913 1 0.00
915 2 0.00
918 2 0.00
922 1 0.00
923 44 0.01
924 544 0.13
925 194 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTATGGTAGCAGGAT
CGACAGCACGTAAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGA
GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
AGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCACCGGAGCATCGCCGGAGAACCTG
ACCGGCGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
AAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
Found at i:12032 original size:26 final size:26
Alignment explanation
Indices: 11996--12069 Score: 148
Period size: 26 Copynumber: 2.8 Consensus size: 26
11986 GTTGACTTAG
11996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12022 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12048 GCATACGGAGTTCATTCCCAGT
1 GCATACGGAGTTCATTCCCAGT
12070 GTATGATCGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14717 original size:26 final size:26
Alignment explanation
Indices: 14688--14738 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14678 TGGGTTGACT
14688 TAGGCATACGAAATTCATTCCCAGTC
1 TAGGCATACGAAATTCATTCCCAGTC
*
14714 TAGGCATACGAAGTTCATTCCCAGT
1 TAGGCATACGAAATTCATTCCCAGT
14739 GAAAGATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAGGCATACGAAATTCATTCCCAGTC
Found at i:16092 original size:74 final size:74
Alignment explanation
Indices: 15971--16118 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
15961 AGTTTGTAAG
15971 GAGCTTTTCTATCCTAATGTTGGATATTTGGGACATGTCCAAAAAGGATAAGATGTTCTATTTTC
1 GAGCTTTTCTATCCTAATGTTGGATATTTGGGACATGTCCAAAAAGGATAAGATGTTCTATTTTC
16036 TTGAAGGCC
66 TTGAAGGCC
16045 GAGCTTTTCTATCCTAATGTTGGATATTTGGGACATGTCCAAAAAGGATAAGATGTTCTATTTTC
1 GAGCTTTTCTATCCTAATGTTGGATATTTGGGACATGTCCAAAAAGGATAAGATGTTCTATTTTC
16110 TTGAAGGCC
66 TTGAAGGCC
16119 TCAAGCCTTG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (74 bp):
GAGCTTTTCTATCCTAATGTTGGATATTTGGGACATGTCCAAAAAGGATAAGATGTTCTATTTTC
TTGAAGGCC
Found at i:20606 original size:26 final size:26
Alignment explanation
Indices: 20566--20644 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
20556 GTTGACTTAG
* *
20566 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
20592 GCATATAGAGATCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
*
20618 GCATA-AGGAGTTCATTCCCAGTGTAA
1 GCATATA-GAGTTCATTCCCAGTCTAA
20644 G
1 G
20645 ATCAGACTGG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:21523 original size:26 final size:26
Alignment explanation
Indices: 21489--21541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21479 GTTGTCTTAG
*
21489 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21515 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21541 G
1 G
21542 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22353 original size:894 final size:884
Alignment explanation
Indices: 20603--23722 Score: 4140
Period size: 894 Copynumber: 3.5 Consensus size: 884
20593 CATATAGAGA
*
20603 TCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTGTAAGATC-AGACTGGACCGAGGGTTGC
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGA-ACTGGACCGAGGGTTGC
* * * * *
20667 GGATGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTTTTTGCCCGGGGCACCATCGT
65 GGATGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCAACGT
** * * *
20732 CAAATCATCGTCAAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGAGGGGCGGGGGGGT
130 CGGAGCATCGTCAGAGAACCT-AAC-GCGGCATTGGGGTTCCGACGATTGG-GGGG-GGGGGGGT
* * * * *
20797 CTGCGCACATGAT-TTGTGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTAATC
191 GTGCACACATGATGTT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
20861 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
255 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCC
*
20926 ACTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
319 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
* * *
20990 TTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCA
384 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
21055 AAACTCCTTCTAAAAAATTTTTTAAAAAATCCCAAACCGTAAAAGGTTTTGAAAATCGTGAAAAA
449 AAACTCCTTCTAAAAAA-TTTTTAAAAAATCCC-AACCGTAAAA-G-TTTGAAAATCGTGAAAAA
*
21120 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTAAAGGGACCATTGTATGAATTTA
510 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
*
21185 CAAGCCATAAAAATGACATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
575 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
21250 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-AGGGTAGTGCTCGCCTGCCCGCTCATT
640 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTG--C-CC-GCCCGCTCGTT
** * *
21314 TTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGC
700 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAACTGAGGGTTGC
* * * *
21379 -ACCAAGCAGGAT-AGGCGGCATGCAGGGGGGACCCGACCGATCCCCAGCTTCCGCATCCTACCC
765 GA-C-AGCAGGATCA-GCAGCATGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
* ** * *
21442 CTCTGCCCGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGTCTTAGGCATACGGAGT
827 CTCTGGCCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
21500 TCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTACG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGCG
* * * * *
21565 AATGCACATGCTAAGCTCAGGCATGTGCT-GTCACCATATTTTTTTTCACCCGGGGCACCAACGT
66 GATGCACATGCTAGGCTCGGGCATGTGCTGGT-GCCATATTTTTTTTCGCCCGGGGCACCAACGT
* * **
21629 CGGAGCATCGTCAGAGAACCTAAC-CGACATTAGGGTTCCGGTGATTGGGGGGGCGGGGGGGTGT
130 CGGAGCATCGTCAGAGAACCTAACGCGGCATTGGGGTTCCGACGATT-GGGGGG-GGGGGGGTGT
* *
21693 GCACACATGATGTTCGAAGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAA
193 GCACACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
21758 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATT
* * *
21823 AAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTGCGAGTTTTTT
322 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * *
21888 GCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATGATGTCTACCAACTTTGGGGCCAAAA
387 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
* *
21953 CTCCTTCTAAAAAATTTTTAGAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
452 CTCCTTCTAAAAAATTTTTA-AAAAATCCC-AACCGT-AAAAGTTT-GAAAATCGTGAAAAATAG
* *
22018 AAAACGAGTCGTCTTGCCATAAAACTTCACATGGAGGCCTTAAGGGACGCATTGTATGAATTTAC
513 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG-CTTAAGGGAC-CATTGTATGAATTTAC
* * *
22083 AAGCCATAAAAAATGGCATTGGCACGGCAAAAATTTGAAGATGTGCCTAAACCCACC-AGCCACC
576 AAGCCAT-AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACC
* * *
22147 CTATCGATCCACGGGTTGCGCATCCCGCCTCTATAGCCGACGTAGTGCCCGCCCGCTCGTTTCAT
639 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTTTCAT
* * * * *
22212 CGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGATCGGACTGAGGGTTGTGGCA
704 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAACTGAGGGTTGCGACA
* ** * * *
22277 GCAGGATCAGCAGCACGCAGGTGGGGACCCGGTCGATCCCCGGCTAGTGCATCCTGCCCCTTTGG
769 GCAGGATCAGCAGCATGCAGG-GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* ** *
22342 CCGACTGAGTGCCCGTACGCTCGTTTCGCGGGTTGACTTAGGGATACGGAGT
833 CCGACTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * * * * *
22394 TTATTCCAAGTCTAAGCATATGTAGTTCATTCCCAGTGTAAGATCGGATTGGACCAATGGTTGCG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGCG
* * *
22459 GGTGCACATGCTCGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATTAC-
66 GATGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCA--ACG
* ** * *
22523 -CGGAGCAACACCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATT------GGGGGGGTG
129 TCGGAGCATCGTCAGAGAACCTAAC--GCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTG
* * *
22581 TGCGCACATGATGTGT-GATGGGTGCTGGTACTCGGCCCTTATATGGGCCCCCTATCCCTCATCA
192 TGCACACATGATGT-TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
22645 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAGTAGCCAT
256 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCAT
22710 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-CTCGTACACTTCGAGTTTT
321 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT-GTACACTTCGAGTTTT
*
22774 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTACCAAGTTTGGGGCCAA
385 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
22839 AA-TACCTTCTGAAAAAA-TTTT--AAAA----AA--GT-----TTTGAAAATCGTGAAAAATAG
450 AACT-CCTTCT-AAAAAATTTTTAAAAAATCCCAACCGTAAAAGTTTGAAAATCGTGAAAAATAG
* * *
22889 AAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTCCA
513 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
22954 GCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGTTGTGCCTAAACCCTCCTACCACCCTAT
578 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
23019 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCAT
643 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG--C-C-CGCTCGTTTCAT
** * * * * * * *
23084 CATTTGGTTTAGGCATACAGAGTTCATTCCTAATCTAAGATTAGATC-AAATCGAGGGTTACGAT
704 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAACT-GAGGGTTGCGAC
* * *
23148 AGCAGGATC-GACAGCATGCAAGGGGGGACTCGACCAATCCCCGACTTGCGCATCCTGCCCCTCT
768 AGCAGGATCAG-CAGCATGC-AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * *
23212 GG-CTAGCTGGGTGCCTGTACGCTCGTTTCATGGATTGACATAGGCATACGGAGT
831 GGCCGA-CTGAGTGCCTGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * *
23266 TCATTCCCAATCTAAGCATGCGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCCAGGGTTGTG
1 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGCG
* * * * ** ** * **
23331 GGTGCACATGCTTGGCTCGAGCATGTGCTGGTGTCGCATTTTTTTT-GCCCAAGGCACCATCCCC
66 GATGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCAACGTC
* * * **
23395 GGAGTATCG-CTGGAGAACCTAACGGGCGGCATTGGGGTTCCGACGATTGGGGGGAGGGGCTTGT
131 GGAGCATCGTC-AGAGAACCTAAC--GCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGT
* * *
23459 GCACACATGATGTACGTTGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
193 GCACACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
23524 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAGTAGCCATTA
258 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTA
*
23589 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAG
323 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
23654 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
388 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
23719 TCCT
453 TCCT
23723 AGCGTACTGC
Statistics
Matches: 1972, Mismatches: 204, Indels: 114
0.86 0.09 0.05
Matches are distributed among these distances:
868 96 0.05
869 23 0.01
870 12 0.01
871 109 0.06
872 251 0.13
873 3 0.00
877 257 0.13
878 5 0.00
880 2 0.00
885 4 0.00
887 3 0.00
888 140 0.07
889 126 0.06
890 1 0.00
893 18 0.01
894 445 0.23
895 194 0.10
896 20 0.01
897 170 0.09
898 92 0.05
899 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCGAGGGTTGCG
GATGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCAACGTC
GGAGCATCGTCAGAGAACCTAACGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCA
CACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
TTCTAAAAAATTTTTAAAAAATCCCAACCGTAAAAGTTTGAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAACTGAGGGTTGCGACAGCAGGATCAGCA
GCATGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCC
TGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
Found at i:23946 original size:26 final size:26
Alignment explanation
Indices: 23924--23975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23914 GTTGTCTTAG
23924 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
23949 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23975 G
1 G
23976 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24106 original size:670 final size:672
Alignment explanation
Indices: 23092--24394 Score: 1960
Period size: 672 Copynumber: 1.9 Consensus size: 672
23082 ATCATTTGGT
* * *
23092 TTAGGCATACAGAGTTCATTCCTAATCTAAGATTAGATCAAATCGAGGGTTACGATAGCAGGATC
1 TTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAATCGAGGGTTACGATAGCAGGATC
* * *
23157 GACAGCATGCAAGGGGGGACTCGACCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCTAGCTGG
66 AACAGCATGCAAGGGGGGACCCGACCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCTAGCTGA
* * * *
23222 GTGCCTGTACGCTCGTTTCATGGATTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCATGC
131 GTGCCCGCACGCTCATTTCATGGATTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
* ** * *
23287 GGAGTTCATTCCCAGTGTAAGATCGGACTGGACCCAGGGTTGTGGGTGCACATGCTTGGCTCGAG
196 GGAGTTCATTCCCAGTGTAAGATCGAACTGGACCCAGGGTTGCAGATGCACATGCTGGGCTCGAG
* * * *
23352 CATGTGCTGGTGTCGCATTTTTTTTGCCCAAGGCACCATCCCCGGAGTATCGCTGGAGAACCTAA
261 CATGTGCTGGTCTCACATTTTTTTTGCCCAAGGCACCATCCCCGGAGCATCACTGGAGAACCTAA
* * * * *
23417 CGGGCGGCATTGGGGTTCCGACGATTGGGGGG-AGGGGCTTGTGCACACATGATGTACGTTGGGT
326 CCGACGGCATTAGGGTTCCGACGATTGGGGGGCAGGGGCGTGTGCACACATGATGTACGATGGGT
* *
23481 TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
391 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
*
23546 AAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
456 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
23610 TTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
521 TTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCC
* *
23675 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTAGCGTACTGCCCGCCCA
586 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTAGCGTACTGCCCGCCCA
23740 CCCGCTCGTTTTGTTTGTTGAC
651 CCCGCTCGTTTTGTTTGTTGAC
* * *
23762 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGC-AGTAGCAGGAT
1 TTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAATCGAGGGTTACGA-TAGCAGGAT
* * * * *
23826 CAACAGCATGC-AGGGGGGACCCGATCGATCCTCTG-CTTGCGCATCCTGCCCCTCTGG-TCGGT
65 CAACAGCATGCAAGGGGGGACCCGACCAATCC-CCGACTTGCGCATCCTGCCCCTCTGGCT-AGC
* * * *
23888 TGAGTGCCCGCACGCTCATTTCATGGGTTGTCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCA
128 TGAGTGCCCGCACGCTCATTTCATGGATTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCA
* *
23952 TACGGAGTTCATTCCTAGTGTAAGATCGAACTGGACCGAGGGTTGCAGATGCACATGCTGGGCTC
193 TACGGAGTTCATTCCCAGTGTAAGATCGAACTGGACCCAGGGTTGCAGATGCACATGCTGGGCTC
** ** *
24017 -AGGCATGTGCTGGTACT-ACATTTTTTTT-CACTCGGGGCACCATCGTCGGAGCATCATTGGAA
258 GA-GCATGTGCTGGT-CTCACATTTTTTTTGC-C-CAAGGCACCATCCCCGGAGCATCACTGG-A
* * * *
24079 GAACCTGACCGACGGCATTAGGGTTCCGGCGATTGGGGGGCGGGGGCGTGTGCACACATGATGTG
318 GAACCTAACCGACGGCATTAGGGTTCCGACGATTGGGGGGCAGGGGCGTGTGCACACATGATGTA
*
24144 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
383 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
24209 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
448 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
24274 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATCTTTTTG
513 GGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATCTTTTTG
24339 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
578 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
24395 TTTGAAAAAA
Statistics
Matches: 567, Mismatches: 56, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
667 2 0.00
668 102 0.18
669 98 0.17
670 104 0.18
671 120 0.21
672 141 0.25
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.27
Consensus pattern (672 bp):
TTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAAATCGAGGGTTACGATAGCAGGATC
AACAGCATGCAAGGGGGGACCCGACCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCTAGCTGA
GTGCCCGCACGCTCATTTCATGGATTGACATAGGCATACGGAGTTCATTCCCAATCTAAGCATAC
GGAGTTCATTCCCAGTGTAAGATCGAACTGGACCCAGGGTTGCAGATGCACATGCTGGGCTCGAG
CATGTGCTGGTCTCACATTTTTTTTGCCCAAGGCACCATCCCCGGAGCATCACTGGAGAACCTAA
CCGACGGCATTAGGGTTCCGACGATTGGGGGGCAGGGGCGTGTGCACACATGATGTACGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTAGCGTACTGCCCGCCCA
CCCGCTCGTTTTGTTTGTTGAC
Found at i:24744 original size:26 final size:26
Alignment explanation
Indices: 24707--24759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24697 TCATGGGTAG
* *
24707 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
24733 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24759 G
1 G
24760 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26506 original size:899 final size:896
Alignment explanation
Indices: 24704--27265 Score: 3738
Period size: 899 Copynumber: 2.9 Consensus size: 896
24694 GTTTCATGGG
* * *
24704 TAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGAACCG
* * * * *
24769 GACGGAGGGTTACGGGTGCACATACTGGGCTCGGGCATGTGCTAGCGCTGCATTTTTTTTTGC-C
66 GACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTTTTTGCTC
* * *
24833 CGAGGCACCATCGCCGGAGCATCACCAGAGAACCTGACCGGCGACATTGGGGTTTCGACGATTGG
131 CG-GGCACCATCGCCGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATT-G
* * *
24898 CGGGGGCCGGGGGGGTGTGCGCACATGATGTGGGGTGGGTGCTAGTACTTGGCCCTTATATTGGC
194 -GGGGG-CGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
24963 CCCCTATCCCTCATTAAACCTCGAGAACTCATACCCCTTTAAAAAGCATTTGAGATTTTACAGGT
257 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGT
* *
25028 TTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAACA-GGTCACAAAATCT
321 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA-ATGGTCACAAAATCA
* *
25092 TGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
385 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
25157 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAGAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTT
450 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATCTCGAAC-GTAAAAAGTTT
* * * *
25222 CAAAAGTCGTGATAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
514 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
* *
25287 CCATTGTGTGGATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
579 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTA
* * *
25352 AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCA-TAGTGCC
644 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATTAGTGCC
* * * * *
25416 CGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCTTTCCCAGTCTAAGATTAGA
709 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
* * ** * ** * *
25481 CCCGATCGAGGGTTACGGCAGCTGGATTAGCAGCTTGTAGGGGGAGACCCGACCGATCTCCGGCT
774 CCCGACCGAGGGTTACAGCAGCAAGATTAGCAACACGGAGGGGGAGACCCGACCGATCCCCGGCT
** * * *
25546 TGTGCATCTAGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTAGGTTGACT
839 TACGCATCTAGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTCACT
* * *
25604 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAATTCATTCCCAGTGTAAGATAGAACCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGAACCG
* * *
25669 GACCAAAGGTTATGGGTGCACATGCTGGGCTTGGGCATGTGCTAGTGCCGCATTTTTTTTTGCTC
66 GACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTTTTTGCTC
* * *
25734 CGGGCACCATCGCCGGAGCATCATCAGAGAACCTGACCGACGGTATTAGGGTTTCGATGATTGGG
131 CGGGCACCATCGCCGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGG
25799 GGGCGGGGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
196 GGGC-GGGGG-GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
25863 CCTATCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
25928 GGTTCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCATGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGT
**
25993 ACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGTAAACAAAAATACAAGGATCACGTCTAC
388 ACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
26058 TAAGTTTGGGGCCAAAACGCCTTTCGAAAAAATTTTAAAAAAATCTCGAATCGTAAAAGGTTTTA
452 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATCTCGAA-CGTAAAAAGTTTTA
* *
26123 AAAATCGGGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGACC
516 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
26188 ATTGTACGAATTTACAAGCCATAAAAATGGCATGGGCATGGTAGAAATATGAAGATGTGCCTAAA
581 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAA
*
26253 TCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATTAGTGCCCG
646 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATTAGTGCCCG
* * *
26318 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCGTAAGGAGTTCATTCCTAGACTAAGATCAGACC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * **
26383 GGACCGAGGGTTGCAGCAGCAAGATTGGCAACACGGAGGGGGGGACTCGGTCGATCCCCGGCTTA
776 CGACCGAGGGTTACAGCAGCAAGATTAGCAACACGGAGGGGGAGACCCGACCGATCCCCGGCTTA
* ** * *
26448 CGCTTCCT-GCCCCTCTAGTTGGCTGAGCGCCCGTACGCTCG-TTCGTGGGTTCACT
841 CGCAT-CTAGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTCACT
* *
26503 TAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGAAGTTCATTCCCAGTGTAAGATCGAACTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGAACCG
* * * * **
26568 GACCGAGGGTTGTGGGTGCACATGCTGGGATCGGGCATGTGCTGGTGCCGTATTTTTTTTCACTC
66 GACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTTTTTGCTC
* * * * * *
26633 GGGGCACCATCGCCAGAGCATCGTCGGAGAACCT-AGCCGACGGCGTTGGGGTTCCGACGATT--
131 CGGGCACCATCGCCGGAGCATCATCAGAGAACCTGA-CCGACGGCATTGGGGTTTCGACGATTGG
*
26695 ------GGGGGGTGTGCGCACATGTTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
195 GGGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
26754 CTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
26819 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
324 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTA
* * *
26884 CACTTCAAGTTTCTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCA
389 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
26949 AGTTTGGGGCCAAAATTCCTTTTGAAAAAATTTTGAAAAAATC-CTGAACCGTAAAAAGTTTTGA
454 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATCTC-GAA-CGTAAAAAGTTTTAA
* *
27013 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* *
27078 TTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCGTAAAC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAAC
* *
27143 CCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGGCC-A-ATGTAGTGCCCT
647 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACAT-TAGTGCCCG
* * **
27206 CCCGCCCACTCATTTCGTCGGTTGGCTTAGTTATACGGAGTTCATTCCTAGTCTAAGATC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
27266 GGTCCAATCC
Statistics
Matches: 1499, Mismatches: 150, Indels: 38
0.89 0.09 0.02
Matches are distributed among these distances:
887 2 0.00
888 63 0.04
889 315 0.21
890 149 0.10
897 2 0.00
898 151 0.10
899 498 0.33
900 314 0.21
901 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (896 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGAACCG
GACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTTTTTGCTC
CGGGCACCATCGCCGGAGCATCATCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGG
GGGCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATCTCGAACGTAAAAAGTTTTAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATTAGTGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCCGACC
GAGGGTTACAGCAGCAAGATTAGCAACACGGAGGGGGAGACCCGACCGATCCCCGGCTTACGCAT
CTAGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTCACT
Found at i:26537 original size:26 final size:26
Alignment explanation
Indices: 26508--26559 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26498 TCACTTAGGC
*
26508 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
*
26534 ATACGAAGTTCATTCCCAGTGTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
26560 TCGAACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Done.