Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168182.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_42, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 251127
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:3027 original size:6 final size:6
Alignment explanation
Indices: 3011--3059 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
3001 TTTAAGTCTA
* * * * *
3011 GATGAT GATGGT GATGGA AATGGT GATAGA GATGGT GATGGT GATGGT
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT
3059 G
1 G
3060 CGAATTTTGA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.45, T:0.29
Consensus pattern (6 bp):
GATGGT
Found at i:3056 original size:12 final size:12
Alignment explanation
Indices: 3017--3059 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
3007 TCTAGATGAT
3017 GATGGTGATGGA
1 GATGGTGATGGA
* *
3029 AATGGTGATAGA
1 GATGGTGATGGA
*
3041 GATGGTGATGGT
1 GATGGTGATGGA
3053 GATGGTG
1 GATGGTG
3060 CGAATTTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.26, C:0.00, G:0.47, T:0.28
Consensus pattern (12 bp):
GATGGTGATGGA
Found at i:3426 original size:18 final size:18
Alignment explanation
Indices: 3403--3527 Score: 105
Period size: 18 Copynumber: 6.9 Consensus size: 18
3393 ATGGTTATTA
3403 TCCACCTCAAATGTATCC
1 TCCACCTCAAATGTATCC
**
3421 TCCACCTCCTCAAATACATCC
1 TCCA---CCTCAAATGTATCC
*
3442 TCCACCTCAAATGTATCAG
1 TCCACCTCAAATGTATC-C
* * *
3461 T-TACCACAAATGTACCC
1 TCCACCTCAAATGTATCC
* *
3478 TCCACCACAAATGTATCA
1 TCCACCTCAAATGTATCC
*
3496 T---CCTCAAATATATCC
1 TCCACCTCAAATGTATCC
3511 TCCACCTCAAATGTATC
1 TCCACCTCAAATGTATC
3528 AAAAACAAAG
Statistics
Matches: 83, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
15 12 0.14
17 1 0.01
18 53 0.64
19 1 0.01
21 16 0.19
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.26
Consensus pattern (18 bp):
TCCACCTCAAATGTATCC
Found at i:3433 original size:21 final size:21
Alignment explanation
Indices: 3407--3449 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
3397 TTATTATCCA
**
3407 CCTCAAATGTATCCTCCACCT
1 CCTCAAATACATCCTCCACCT
3428 CCTCAAATACATCCTCCACCT
1 CCTCAAATACATCCTCCACCT
3449 C
1 C
3450 AAATGTATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.02, T:0.26
Consensus pattern (21 bp):
CCTCAAATACATCCTCCACCT
Found at i:3513 original size:33 final size:34
Alignment explanation
Indices: 3427--3528 Score: 134
Period size: 33 Copynumber: 3.0 Consensus size: 34
3417 ATCCTCCACC
*
3427 TCCTCAAATACATCCTCCACCTCAAATGTATCAG
1 TCCTCAAATATATCCTCCACCTCAAATGTATCAG
* * * *
3461 TTACCACAAATGTACCCTCCACCACAAATGTATCA-
1 -T-CCTCAAATATATCCTCCACCTCAAATGTATCAG
3496 TCCTCAAATATATCCTCCACCTCAAATGTATCA
1 TCCTCAAATATATCCTCCACCTCAAATGTATCA
3529 AAAACAAAGG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 28 0.49
34 1 0.02
35 1 0.02
36 27 0.47
ACGTcount: A:0.34, C:0.34, G:0.05, T:0.26
Consensus pattern (34 bp):
TCCTCAAATATATCCTCCACCTCAAATGTATCAG
Found at i:10757 original size:26 final size:26
Alignment explanation
Indices: 10721--10773 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10711 AGCTCATGTT
10721 ACCTAATAATTGAAGAATCTAATATA
1 ACCTAATAATTGAAGAATCTAATATA
10747 ACCTAATAATTGAAGAATCTAATATA
1 ACCTAATAATTGAAGAATCTAATATA
10773 A
1 A
10774 AGAGAAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (26 bp):
ACCTAATAATTGAAGAATCTAATATA
Found at i:11983 original size:16 final size:16
Alignment explanation
Indices: 11964--11996 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11954 TAAAAACATG
*
11964 TGGTGATAACATTAAT
1 TGGTGAAAACATTAAT
11980 TGGTGAAAACATTAAT
1 TGGTGAAAACATTAAT
11996 T
1 T
11997 AGTGGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (16 bp):
TGGTGAAAACATTAAT
Found at i:17241 original size:2 final size:2
Alignment explanation
Indices: 17234--17262 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17224 CTCGGTAATG
17234 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
17263 CTTCTGGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24945 original size:22 final size:21
Alignment explanation
Indices: 24920--24971 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
24910 GAGACCCACC
*
24920 AAAAAACAAAGTTTTCCAAAAT
1 AAAAAA-AAAGGTTTCCAAAAT
*
24942 AAAAAAAAGGGTTTCCAAAAT
1 AAAAAAAAAGGTTTCCAAAAT
24963 AAAAAAAAA
1 AAAAAAAAA
24972 TCTTTCTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.17
Consensus pattern (21 bp):
AAAAAAAAAGGTTTCCAAAAT
Found at i:24977 original size:21 final size:21
Alignment explanation
Indices: 24920--24977 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
24910 GAGACCCACC
*
24920 AAAAAACAAAGTTTTCCAAAAT
1 AAAAAA-AAAGCTTTCCAAAAT
* *
24942 AAAAAAAAGGGTTTCCAAAAT
1 AAAAAAAAAGCTTTCCAAAAT
*
24963 AAAAAAAAATCTTTC
1 AAAAAAAAAGCTTTC
24978 TATAAACAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 25 0.81
22 6 0.19
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (21 bp):
AAAAAAAAAGCTTTCCAAAAT
Found at i:25697 original size:22 final size:21
Alignment explanation
Indices: 25654--25698 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
25644 CAGGTAAAAA
*
25654 ATATATATTTTTAAATTTTTT
1 ATATATATTTTTAAATTATTT
25675 ATATATTATTTTTATAA-TATTT
1 ATATA-TATTTTTA-AATTATTT
25697 AT
1 AT
25699 CCATAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 14 0.67
23 2 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATATATATTTTTAAATTATTT
Found at i:25810 original size:20 final size:21
Alignment explanation
Indices: 25778--25817 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
25768 GTTAATTTTT
25778 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
25799 AAAATAAA-TTTAATAATAA
1 AAAATAAACTTTAAAAATAA
25818 TACCAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:26223 original size:16 final size:15
Alignment explanation
Indices: 26196--26228 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
26186 CAAAAATTTA
26196 AATAAAAAAATAAAT
1 AATAAAAAAATAAAT
26211 AATAAATAAAATAAAT
1 AATAAA-AAAATAAAT
26227 AA
1 AA
26229 AATTTCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAAAAAAATAAAT
Found at i:26225 original size:9 final size:9
Alignment explanation
Indices: 26195--26251 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 9
26185 TCAAAAATTT
26195 AAATAAA-A
1 AAATAAATA
26203 AAATAAAT-
1 AAATAAATA
26211 -AATAAATA
1 AAATAAATA
26219 AAATAAATA
1 AAATAAATA
***
26228 AAATTTCTA
1 AAATAAATA
26237 AAA-AAATA
1 AAATAAATA
26245 AAATAAA
1 AAATAAA
26252 ATGTGTGCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
7 7 0.18
8 12 0.31
9 20 0.51
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAATA
Found at i:38670 original size:9 final size:9
Alignment explanation
Indices: 38643--38676 Score: 50
Period size: 9 Copynumber: 3.6 Consensus size: 9
38633 CTAAAAATCT
38643 TTTTATATA
1 TTTTATATA
38652 TTATTAATATA
1 TT-TT-ATATA
38663 TTTTATATA
1 TTTTATATA
38672 TTTTA
1 TTTTA
38677 AGAAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 12 0.52
10 4 0.17
11 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTATATA
Found at i:39819 original size:22 final size:22
Alignment explanation
Indices: 39718--39852 Score: 98
Period size: 22 Copynumber: 6.1 Consensus size: 22
39708 TTTAGAAAAC
* *
39718 AATTATAAATGA-TTAATAATTA
1 AATTATTAATGATTTACT-ATTA
* * *
39740 AATTATTAGTTATTTACTAATA
1 AATTATTAATGATTTACTATTA
* *
39762 ATTTATCT-ATGATTTACTACTA
1 AATTAT-TAATGATTTACTATTA
*
39784 AATTAGTAATGATTTACTATTA
1 AATTATTAATGATTTACTATTA
* *
39806 AATTATTAACGATTTA-TTTCTA
1 AATTATTAATGATTTACTAT-TA
* *
39828 ATTTATAAATGATTTGAC-ATTA
1 AATTATTAATGATTT-ACTATTA
39850 AAT
1 AAT
39853 CATGAATGTT
Statistics
Matches: 87, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.03
22 77 0.89
23 7 0.08
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (22 bp):
AATTATTAATGATTTACTATTA
Found at i:40025 original size:22 final size:22
Alignment explanation
Indices: 40000--40138 Score: 90
Period size: 22 Copynumber: 6.5 Consensus size: 22
39990 GATTAATTAT
* *
40000 TTTACTATTAAATTATCACTAA
1 TTTACTATTAAATTATTAGTAA
* * *
40022 TTTACAATTAAGTTATTTGTAA
1 TTTACTATTAAATTATTAGTAA
* *
40044 TTTACTATTATATTATTAGTGA
1 TTTACTATTAAATTATTAGTAA
**
40066 TTTACTGCTAAATTA-T--TAA
1 TTTACTATTAAATTATTAGTAA
* *
40085 TTTACT-TCTAAATTATTAATGA
1 TTTACTAT-TAAATTATTAGTAA
* * *
40107 TTTATTATTATATTTTTA-TATA
1 TTTACTATTAAATTATTAGTA-A
*
40129 TTTATTATTA
1 TTTACTATTA
40139 TGTTATCATT
Statistics
Matches: 91, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
19 15 0.16
20 1 0.01
21 2 0.02
22 72 0.79
23 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTACTATTAAATTATTAGTAA
Found at i:40087 original size:19 final size:19
Alignment explanation
Indices: 40065--40104 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
40055 ATTATTAGTG
40065 ATTTACTGCTAAATTATTA
1 ATTTACTGCTAAATTATTA
*
40084 ATTTACTTCTAAATTATTA
1 ATTTACTGCTAAATTATTA
40103 AT
1 AT
40105 GATTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.50
Consensus pattern (19 bp):
ATTTACTGCTAAATTATTA
Found at i:40115 original size:14 final size:12
Alignment explanation
Indices: 40096--40139 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 12
40086 TTACTTCTAA
40096 ATTATTAATGATTT
1 ATTATT-AT-ATTT
40110 ATTATTATATTT
1 ATTATTATATTT
40122 -TTA-TATATTT
1 ATTATTATATTT
40132 ATTATTAT
1 ATTATTAT
40140 GTTATCATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.25
11 6 0.21
12 7 0.25
13 2 0.07
14 6 0.21
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (12 bp):
ATTATTATATTT
Found at i:40232 original size:22 final size:22
Alignment explanation
Indices: 40203--40430 Score: 122
Period size: 22 Copynumber: 10.5 Consensus size: 22
40193 ATTTTATCAC
*
40203 TAAATTATCAATGATTCATTA-
1 TAAATTATCAATGATTTATTAT
* *
40224 TAAAGTTATTACTGATTTA-TAT
1 TAAA-TTATCAATGATTTATTAT
*
40246 TAAATTATCCATGATTTATTAT
1 TAAATTATCAATGATTTATTAT
* * * *
40268 TAAGTTATCATTGATTAACTAT
1 TAAATTATCAATGATTTATTAT
* * *
40290 TATATTATCAATGATTTACTAC
1 TAAATTATCAATGATTTATTAT
* *
40312 TAAATTCT-ATTGATTTACTT-T
1 TAAATTATCAATGATTTA-TTAT
* * * * * *
40333 TAAGTTTTCAAGGATTAACTAC
1 TAAATTATCAATGATTTATTAT
** * *
40355 TAAATTATCAATTTTTTACTAC
1 TAAATTATCAATGATTTATTAT
* * * *
40377 TAATTTATCATTAATTTATTAC
1 TAAATTATCAATGATTTATTAT
* * * *
40399 TAATTTATCAATTATTTACTAA
1 TAAATTATCAATGATTTATTAT
*
40421 TAATTTATCA
1 TAAATTATCA
40431 TTCATTTCTA
Statistics
Matches: 158, Mismatches: 43, Indels: 11
0.75 0.20 0.05
Matches are distributed among these distances:
21 32 0.20
22 126 0.80
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.48
Consensus pattern (22 bp):
TAAATTATCAATGATTTATTAT
Found at i:40250 original size:43 final size:44
Alignment explanation
Indices: 40203--40305 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 44
40193 ATTTTATCAC
* *
40203 TAAATTATCAATGATTCATTATAAAGTTATTACTGATTTA-TAT
1 TAAATTATCAATGATTCATTATAAAGTTATCACTGATTAACTAT
* * * *
40246 TAAATTATCCATGATTTATTATTAAGTTATCATTGATTAACTAT
1 TAAATTATCAATGATTCATTATAAAGTTATCACTGATTAACTAT
*
40290 TATATTATCAATGATT
1 TAAATTATCAATGATT
40306 TACTACTAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
43 34 0.67
44 17 0.33
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.48
Consensus pattern (44 bp):
TAAATTATCAATGATTCATTATAAAGTTATCACTGATTAACTAT
Found at i:40305 original size:65 final size:65
Alignment explanation
Indices: 40236--40379 Score: 159
Period size: 65 Copynumber: 2.2 Consensus size: 65
40226 AAGTTATTAC
* ** * *
40236 TGATTTA-TATTAAATTATCCA-TGATTTA-TTATTAAGTTATCATTGATTAACTATTATATTAT
1 TGATTTACTACTAAA-T-TCCATTGATTTACTT-TTAAGTTATCAAGGATTAACTACTAAATTAT
40298 CAA
63 CAA
* *
40301 TGATTTACTACTAAATTCTATTGATTTACTTTTAAGTTTTCAAGGATTAACTACTAAATTATCAA
1 TGATTTACTACTAAATTCCATTGATTTACTTTTAAGTTATCAAGGATTAACTACTAAATTATCAA
**
40366 TTTTTTACTACTAA
1 TGATTTACTACTAA
40380 TTTATCATTA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 3 0.04
65 56 0.84
66 8 0.12
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (65 bp):
TGATTTACTACTAAATTCCATTGATTTACTTTTAAGTTATCAAGGATTAACTACTAAATTATCAA
Found at i:40391 original size:11 final size:11
Alignment explanation
Indices: 40377--40437 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
40367 TTTTTACTAC
40377 TAATTTATCAT
1 TAATTTATCAT
* *
40388 TAATTTATTAC
1 TAATTTATCAT
40399 TAATTTATCAAT
1 TAATTTATC-AT
*
40411 T-ATTTA-CTAA
1 TAATTTATC-AT
40421 TAATTTATCAT
1 TAATTTATCAT
*
40432 TCATTT
1 TAATTT
40438 CTACAAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
10 3 0.08
11 33 0.85
12 3 0.08
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (11 bp):
TAATTTATCAT
Found at i:40400 original size:44 final size:44
Alignment explanation
Indices: 40352--40437 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 44
40342 AAGGATTAAC
* *
40352 TACTAAATTATCAATTTTTTACTACTAATTTATCATTAATTTAT
1 TACTAAATTATCAATTATTTACTAATAATTTATCATTAATTTAT
* *
40396 TACTAATTTATCAATTATTTACTAATAATTTATCATTCATTT
1 TACTAAATTATCAATTATTTACTAATAATTTATCATTAATTT
40438 CTACAAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (44 bp):
TACTAAATTATCAATTATTTACTAATAATTTATCATTAATTTAT
Found at i:40437 original size:22 final size:21
Alignment explanation
Indices: 40350--40441 Score: 105
Period size: 22 Copynumber: 4.2 Consensus size: 21
40340 TCAAGGATTA
* *
40350 ACTACTAAATTATCAATTTTTT
1 ACTACTAATTTATC-ATTATTT
40372 ACTACTAATTTATCATTAATTT
1 ACTACTAATTTATCATT-ATTT
*
40394 ATTACTAATTTATCAATTATTT
1 ACTACTAATTTATC-ATTATTT
*
40416 ACTAATAATTTATCATTCATTT
1 ACTACTAATTTATCATT-ATTT
40438 -CTAC
1 ACTAC
40442 AAAATTATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
21 9 0.15
22 49 0.80
23 3 0.05
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (21 bp):
ACTACTAATTTATCATTATTT
Found at i:40517 original size:22 final size:22
Alignment explanation
Indices: 40492--40537 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
40482 AAACAAAAGC
*
40492 TAATTTACTATTAAG-TAGTCAA
1 TAATTTACTACTAAGTTA-TCAA
*
40514 TAATTTATTACTAAGTTATCAA
1 TAATTTACTACTAAGTTATCAA
40536 TA
1 TA
40538 TTCCACTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (22 bp):
TAATTTACTACTAAGTTATCAA
Found at i:40747 original size:14 final size:14
Alignment explanation
Indices: 40705--40749 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
40695 TTACAAAATA
40705 TTATACATAATTTT
1 TTATACATAATTTT
40719 TT-TA-A-AATTTCTT
1 TTATACATAA-TT-TT
40732 TTATACATAATTTT
1 TTATACATAATTTT
40746 TTAT
1 TTAT
40750 TATATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
11 2 0.08
12 3 0.12
13 6 0.23
14 10 0.38
15 3 0.12
16 2 0.08
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (14 bp):
TTATACATAATTTT
Found at i:41911 original size:18 final size:19
Alignment explanation
Indices: 41888--41924 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
41878 TAATTTTTTT
*
41888 AGTCTAATTA-TAAAAAAA
1 AGTCTAATAATTAAAAAAA
41906 AGTCTAATAATTAAAAAAA
1 AGTCTAATAATTAAAAAAA
41925 TTATTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
AGTCTAATAATTAAAAAAA
Found at i:42142 original size:2 final size:2
Alignment explanation
Indices: 42135--42174 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
42125 GCTTAGGTTG
*
42135 AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42175 AGTGGACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:43678 original size:35 final size:36
Alignment explanation
Indices: 43565--43709 Score: 242
Period size: 36 Copynumber: 4.1 Consensus size: 36
43555 ATATTAGAGG
43565 CTTTTCTTTCTACTTGTTTCATTGTAATTTGCCTTTT
1 CTTTT-TTTCTACTTGTTTCATTGTAATTTGCCTTTT
43602 CTTTTTTTCTACTTGTTTCATTGTAATTTGCCTTTT
1 CTTTTTTTCTACTTGTTTCATTGTAATTTGCCTTTT
43638 CTTTTTTTCTACTTGTTTCATTGTAATTTG-CTCTTT
1 CTTTTTTTCTACTTGTTTCATTGTAATTTGCCT-TTT
*
43674 -TTTTTTTCTACTTGTTTCATTGTAATTT-TCTTTT
1 CTTTTTTTCTACTTGTTTCATTGTAATTTGCCTTTT
43708 CT
1 CT
43710 GGTTTCGCTC
Statistics
Matches: 105, Mismatches: 0, Indels: 8
0.93 0.00 0.07
Matches are distributed among these distances:
34 3 0.03
35 33 0.31
36 64 0.61
37 5 0.05
ACGTcount: A:0.11, C:0.17, G:0.08, T:0.65
Consensus pattern (36 bp):
CTTTTTTTCTACTTGTTTCATTGTAATTTGCCTTTT
Found at i:50110 original size:18 final size:18
Alignment explanation
Indices: 50072--50110 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
50062 AATTCCAATA
* *
50072 ATAACCTCACATATTTGT
1 ATAACCTCACATATATAT
*
50090 ATAACCTCATATATATAT
1 ATAACCTCACATATATAT
50108 ATA
1 ATA
50111 TTAATAATAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAACCTCACATATATAT
Found at i:50977 original size:16 final size:16
Alignment explanation
Indices: 50958--50990 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50948 TAAAAACATG
*
50958 TGGTGATAACATTAAT
1 TGGTGAAAACATTAAT
50974 TGGTGAAAACATTAAT
1 TGGTGAAAACATTAAT
50990 T
1 T
50991 AGTGGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (16 bp):
TGGTGAAAACATTAAT
Found at i:55710 original size:58 final size:58
Alignment explanation
Indices: 55622--56126 Score: 500
Period size: 57 Copynumber: 8.7 Consensus size: 58
55612 TTGTGCAGGA
* ** * *
55622 AAAATTGATACTTTCAACTTTTCCCC-AAAATATTTTTTAGAATTTTTAATCTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
* *
55679 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTGGAAAA-TTTAATTTCAAGG
* *** *
55741 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTT-GAAAATTT-ATCTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAAT-TTCAAGG
* * ** * * * *
55797 AAAATTGATACTTTCAATTTTTCCTCTAAATCTTTTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CCAAA-AATATTTTTTGGAAAATTTAATTTCAAGG
* * * ** *
55857 AAAATTAATACTTTCAACTTTTCCCAAAAAACATTTTTTGGAAACCTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
* ** *
55915 AAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTGGAAACCTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
* * * * * * *
55973 AAAATTAATACTTTCAACTTTTCCTCAAAACT-TTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
* * * * *
56030 AAAATTGATACTTTCAACTTTTCCTCAAAACTTTTTTTTGG-AAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
* *
56087 AAAATTTATACTTTCAACTTTTCCTCAAAAATATATTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTT
56127 TCTTGAAATT
Statistics
Matches: 384, Mismatches: 51, Indels: 25
0.83 0.11 0.05
Matches are distributed among these distances:
55 2 0.01
56 31 0.08
57 129 0.34
58 125 0.33
59 7 0.02
60 37 0.10
61 10 0.03
62 43 0.11
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTAATTTCAAGG
Found at i:55887 original size:116 final size:114
Alignment explanation
Indices: 55622--56126 Score: 498
Period size: 116 Copynumber: 4.3 Consensus size: 114
55612 TTGTGCAGGA
* * * ** * **
55622 AAAATTGATACTTTCAACTTTTCCCCAAAATAT-TTTTTAGAATTTTTAATCTCGAGGAAAATTG
1 AAAATTAATACTTTCAACTTTTCCTCAAAAAATCTTTTT-GAAAATTT-ATTTTAAGGAAAATTG
* *
55686 ATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAAACTTTAATTTCGAGG
64 ATACTTTCAACTTTTCCCC-AAAA-A-CTTTTTTTTGAAAA-TTTAATTTCAAGG
* **
55741 AAAATTGATACTTTCAACTTTTCCTC-AAAAATCCCTTTGAAAATTTATCTTTAAGGAAAATTGA
1 AAAATTAATACTTTCAACTTTTCCTCAAAAAATCTTTTTGAAAATTTAT-TTTAAGGAAAATTGA
* * * * * *
55805 TACTTTCAATTTTTCCTCTAAATCTTTTTTTTTTGAAAATTTATTTTTAAGG
65 TACTTTCAACTTTTCCCCAAAAAC--TTTTTTTTGAAAATTTAATTTCAAGG
* * **
55857 AAAATTAATACTTTCAACTTTTCC-CAAAAAA-CATTTTTTGGAAACCTTAATTTCGAGGAAAAT
1 AAAATTAATACTTTCAACTTTTCCTCAAAAAATC--TTTTT-GAAA-ATTTATTTTAAGGAAAAT
* * ** *
55920 TGATACTTTCAACTTTTCCCCAAAAACATTTTTTGGAAACCTTAATTTCGAGG
62 TGATACTTTCAACTTTTCCCCAAAAACTTTTTTTTGAAAATTTAATTTCAAGG
** * *
55973 AAAATTAATACTTTCAACTTTTCCTCAAAACTTTTTTTTGAAAATTTATTTTTAAGAAAAATTGA
1 AAAATTAATACTTTCAACTTTTCCTCAAAAAATCTTTTTGAAAATTTA-TTTTAAGGAAAATTGA
* * * *
56038 TACTTTCAACTTTTCCTC-AAAACTTTTTTTTGGAAATTTATTTTTAAGG
65 TACTTTCAACTTTTCCCCAAAAACTTTTTTTTGAAAATTTAATTTCAAGG
* *
56087 AAAATTTATACTTTCAACTTTTCCTCAAAAATATATTTTT
1 AAAATTAATACTTTCAACTTTTCCTCAAAAA-ATCTTTTT
56127 TCTTGAAATT
Statistics
Matches: 317, Mismatches: 56, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
114 55 0.17
115 42 0.13
116 86 0.27
117 26 0.08
118 76 0.24
119 32 0.10
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (114 bp):
AAAATTAATACTTTCAACTTTTCCTCAAAAAATCTTTTTGAAAATTTATTTTAAGGAAAATTGAT
ACTTTCAACTTTTCCCCAAAAACTTTTTTTTGAAAATTTAATTTCAAGG
Found at i:58232 original size:20 final size:20
Alignment explanation
Indices: 58204--58246 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
58194 AAAAGAAAAT
58204 AAATCATAAA-ATAAAAATAA
1 AAATCATAAATAT-AAAATAA
* *
58224 AAATGATAAATATGAAATAA
1 AAATCATAAATATAAAATAA
58244 AAA
1 AAA
58247 AATTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATCATAAATATAAAATAA
Found at i:59428 original size:2 final size:2
Alignment explanation
Indices: 59421--59451 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
59411 CTTGGTAATG
59421 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
59452 TATCTTCTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67147 original size:22 final size:21
Alignment explanation
Indices: 67122--67173 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
67112 GAGACCCACC
*
67122 AAAAAACAAAGTTTTCCAAAAT
1 AAAAAA-AAAGGTTTCCAAAAT
*
67144 AAAAAAAAGGGTTTCCAAAAT
1 AAAAAAAAAGGTTTCCAAAAT
67165 AAAAAAAAA
1 AAAAAAAAA
67174 TCTTTCTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.65, C:0.10, G:0.08, T:0.17
Consensus pattern (21 bp):
AAAAAAAAAGGTTTCCAAAAT
Found at i:67179 original size:21 final size:21
Alignment explanation
Indices: 67122--67179 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
67112 GAGACCCACC
*
67122 AAAAAACAAAGTTTTCCAAAAT
1 AAAAAA-AAAGCTTTCCAAAAT
* *
67144 AAAAAAAAGGGTTTCCAAAAT
1 AAAAAAAAAGCTTTCCAAAAT
*
67165 AAAAAAAAATCTTTC
1 AAAAAAAAAGCTTTC
67180 TATAAACAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 25 0.81
22 6 0.19
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (21 bp):
AAAAAAAAAGCTTTCCAAAAT
Found at i:68011 original size:20 final size:21
Alignment explanation
Indices: 67979--68018 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
67969 GTTAATTTTT
67979 AAAATAAACTTTAAAAATAAA
1 AAAATAAACTTTAAAAATAAA
*
68000 AAAATAAA-TTTAATAATAA
1 AAAATAAACTTTAAAAATAA
68019 TACCAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATAAACTTTAAAAATAAA
Found at i:68431 original size:22 final size:22
Alignment explanation
Indices: 68408--68448 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
68398 TAAAAAAATA
*
68408 AAAAAAAT-TAATAAAATTTCT
1 AAAAAAATAAAATAAAATTTCT
68429 AAAAAAATAAAATAAAATTT
1 AAAAAAATAAAATAAAATTT
68449 GTGCATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAAAAATAAAATAAAATTTCT
Found at i:80287 original size:47 final size:47
Alignment explanation
Indices: 80233--81010 Score: 557
Period size: 47 Copynumber: 16.9 Consensus size: 47
80223 TTCGAGAACG
* * * *
80233 GATGAATTTTAAAGTTGTTGAGCCTCTACTGAAAAGAGCTTTTCCAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * *
80280 GATGAATTTTAAA----ATGAGCCTCTGCTTAGAGGAACTTTTTCAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * * * *
80323 GATGATTTTTTAAAGTTGTTGAACCTTTGCTAAAAGGAGCTTTTTCAA
1 GATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * * *
80371 GATAAAGTTTTTAAAGTTGTTAAGCCTTTGCTAAGAGGAGCTTTTTCAA
1 GATGAA--TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * *
80420 GATGAATTTTAAAGTTGTTAAGCCTCTGTTGAGAGGAGC-CTTTCTAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC-AA
* * *
80467 -AT---TTTCAAAAGTTGTTAAGCCTCTGCTAAGAGGAGCTTTTTCAA
1 GATGAATTT-TAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
** *
80511 GATGAATTTTAAAGTTGTTGAGCCTCTATTGAGATGAGCTTTTTCAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * * * *
80558 GATGAATTTTAAAGTTGTTAAGCCTCTACTTAGAAGAGCTTTTTGAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * * * *
80605 GATGATTTTTTTAAAATTGTTGAGCCTATACTGAGAGGAGCTTTTTTTAA
1 GATGA--ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGC-TTTTTCAA
* * * * * *
80655 GATGATTTTTTAGAGTTGTTGAGCCTCTGTTGAGATGAGCTTTTTTAG
1 GATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
*
80703 GATAAAGTTTTAAAGTTGTTGAGCCTCT--TGAGAGGAGCCTTTTT-AA
1 GATGAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAA
* * *
80749 -AT---TTTTAAAAGTTGTTGAGGCTTTGCTGAGAGGA-TTTTTTCCAA
1 GATGAATTTT-AAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT-CAA
* * *
80793 TATG-ATTTTCAAAAGTTGTTGAGCCTCTGTTGAAAGGAGCCTTTTT---
1 GATGAATTTT--AAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAA
* * * *
80839 -A--AATTTTAATGTTGTTAAGCCTATGTTGAGAGGAGCTTTTT---
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * *
80880 --TAAATTTT--A----TTGAACCTCTACTGAGAGGAGC-TTTTCTAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTC-AA
* * * * *
80919 TATGATTTTTAAAGTTATTGAACCTCTGCTGAAAGGAGCTTTTTCAA
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
* * * * *
80966 AATGAATTTTAAAGTTATTGAGCCTCTACTTAGATGAGTCTTTTT
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTT
81011 AAATTTTTAA
Statistics
Matches: 597, Mismatches: 87, Indels: 93
0.77 0.11 0.12
Matches are distributed among these distances:
35 4 0.01
36 17 0.03
41 16 0.03
42 50 0.08
43 32 0.05
44 51 0.09
45 11 0.02
46 15 0.03
47 187 0.31
48 97 0.16
49 100 0.17
50 17 0.03
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.40
Consensus pattern (47 bp):
GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAA
Found at i:80577 original size:138 final size:138
Alignment explanation
Indices: 80233--81022 Score: 634
Period size: 138 Copynumber: 5.8 Consensus size: 138
80223 TTCGAGAACG
* * * *
80233 GATGAATTTTAAAGTTGTTGAGCCTCTACTGAAAAGAGCTTTTCCAAGATGAATTTTAAA-ATG-
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAATTTTAAAGTTGT
* * * *
80296 --AGCCTCTGCTT-AGAGGA-ACTTTTTCAAGATGATTTTTTAAAGTTGTTGAA-CCTTTGCTAA
66 TAAGCCTCTG-TTGAGAGGAGCCTTTTT--A-A--ATTTTTAAAAGTTGTT-AAGCCTCTGCTGA
*
80356 AAGGAGCTTTTTCAA
124 GAGGAGCTTTTTCAA
* * *
80371 GATAAAGTTTTTAAAGTTGTTAAGCCTTTGCT-AAGAGGAGCTTTTTCAAGATGAATTTTAAAGT
1 GATGAA--TTTTAAAGTTGTTGAGCCTCTGCTGAA-AGGAGCTTTTTCAAGATGAATTTTAAAGT
* * *
80435 TGTTAAGCCTCTGTTGAGAGGAGCCTTTCTAAATTTTCAAAAGTTGTTAAGCCTCTGCTAAGAGG
63 TGTTAAGCCTCTGTTGAGAGGAGCCTTTTTAAATTTTTAAAAGTTGTTAAGCCTCTGCTGAGAGG
80500 AGCTTTTTCAA
128 AGCTTTTTCAA
** * *
80511 GATGAATTTTAAAGTTGTTGAGCCTCTATTGAGATGAGCTTTTTCAAGATGAATTTTAAAGTTGT
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAATTTTAAAGTTGT
* * * * *
80576 TAAGCCTCTACTT-AGAAGAG-CTTTTTGAAGATGATTTTTTTAAAA-TTGTTGAGCCTATACTG
66 TAAGCCTCT-GTTGAGAGGAGCCTTTTT--A-A--A--TTTTTAAAAGTTGTTAAGCCTCTGCTG
*
80638 AGAGGAGCTTTTTTTAA
123 AGAGGAGC-TTTTTCAA
* * * * * * * *
80655 GATGATTTTTTAGAGTTGTTGAGCCTCTGTTGAGATGAGCTTTTTTAGGATAAAGTTTTAAAGTT
1 GATGA-ATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAA-TTTTAAAGTT
* * * *
80720 GTTGAGCCTC--TTGAGAGGAGCCTTTTTAAATTTTTAAAAGTTGTTGAGGCTTTGCTGAGAGGA
64 GTTAAGCCTCTGTTGAGAGGAGCCTTTTTAAATTTTTAAAAGTTGTTAAGCCTCTGCTGAGAGGA
*
80783 -TTTTTTCCAA
129 GCTTTTT-CAA
* * *
80793 TATG-ATTTTCAAAAGTTGTTGAGCCTCTGTTGAAAGGAGCCTTTTT----A--AATTTTAATGT
1 GATGAATTTT--AAAGTTGTTGAGCCTCTGCTGAAAGGAG-CTTTTTCAAGATGAATTTTAAAGT
* * *
80851 TGTTAAGCCTATGTTGAGAGGAGCTTTTTTAAA-TTTT---A-TTG--AA-CCTCTACTGAGAGG
63 TGTTAAGCCTCTGTTGAGAGGAGCCTTTTTAAATTTTTAAAAGTTGTTAAGCCTCTGCTGAGAGG
80908 AGC-TTTTCTAA
128 AGCTTTTTC-AA
* * * * * *
80919 TATGATTTTTAAAGTTATTGAACCTCTGCTGAAAGGAGCTTTTTCAAAATGAATTTTAAAGTTAT
1 GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAATTTTAAAGTTGT
* * * *
80984 TGAGCCTCTACTT-AGATGAGTCTTTTTAAATTTTTAAAA
66 TAAGCCTCT-GTTGAGAGGAGCCTTTTTAAATTTTTAAAA
81023 ATTATTGAGT
Statistics
Matches: 539, Mismatches: 68, Indels: 94
0.77 0.10 0.13
Matches are distributed among these distances:
124 6 0.01
125 26 0.05
126 22 0.04
127 5 0.01
128 1 0.00
129 3 0.01
130 34 0.06
131 6 0.01
132 17 0.03
133 6 0.01
134 20 0.04
135 1 0.00
136 4 0.01
137 10 0.02
138 110 0.20
139 34 0.06
140 90 0.17
141 2 0.00
142 3 0.01
143 27 0.05
144 40 0.07
145 53 0.10
146 19 0.04
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (138 bp):
GATGAATTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGCTTTTTCAAGATGAATTTTAAAGTTGT
TAAGCCTCTGTTGAGAGGAGCCTTTTTAAATTTTTAAAAGTTGTTAAGCCTCTGCTGAGAGGAGC
TTTTTCAA
Found at i:80888 original size:42 final size:42
Alignment explanation
Indices: 80807--80888 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
80797 ATTTTCAAAA
* *
80807 GTTGTTGAGCCTCTGTTGAAAGGAGCCTTTTTAAATTTTAAT
1 GTTGTTAAGCCTATGTTGAAAGGAGCCTTTTTAAATTTTAAT
* *
80849 GTTGTTAAGCCTATGTTGAGAGGAGCTTTTTTAAATTTTA
1 GTTGTTAAGCCTATGTTGAAAGGAGCCTTTTTAAATTTTA
80889 TTGAACCTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (42 bp):
GTTGTTAAGCCTATGTTGAAAGGAGCCTTTTTAAATTTTAAT
Found at i:81537 original size:24 final size:23
Alignment explanation
Indices: 81510--81559 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
81500 GAAACCCACC
*
81510 AAAAAAAAAAGTTTTCCAAAATA
1 AAAAAAAAAAGGTTTCCAAAATA
*
81533 AAAAAAAAAAGGTTTCCAAAATC
1 AAAAAAAAAAGGTTTCCAAAATA
81556 AAAA
1 AAAA
81560 TTTTTTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.66, C:0.10, G:0.06, T:0.18
Consensus pattern (23 bp):
AAAAAAAAAAGGTTTCCAAAATA
Found at i:82320 original size:13 final size:13
Alignment explanation
Indices: 82302--82326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82292 TTTTGTTAAT
82302 TTTAAAAATAAAC
1 TTTAAAAATAAAC
82315 TTTAAAAATAAA
1 TTTAAAAATAAA
82327 AAAATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
TTTAAAAATAAAC
Found at i:82338 original size:20 final size:21
Alignment explanation
Indices: 82305--82344 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
82295 TGTTAATTTT
82305 AAAAATAAACTTTAAAAATAA
1 AAAAATAAACTTTAAAAATAA
*
82326 AAAAATAAA-TTTAATAATA
1 AAAAATAAACTTTAAAAATA
82345 TTACCAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAAACTTTAAAAATAA
Found at i:82704 original size:196 final size:195
Alignment explanation
Indices: 82350--82704 Score: 457
Period size: 196 Copynumber: 1.8 Consensus size: 195
82340 TAATATTACC
* * * *
82350 AAAAATAATAAAATGTCAGAAAAGGAAATTTTTATCCGATGATGAAATTCAAAGGTATTCCGAGT
1 AAAAATAATAAAATATCAAAAAAGGAAATTTTTATCCAATGATGAAATTCAAAAGTATTCCGAGT
* * ** * *
82415 AGTGATGCCTAAGAAATCTCTAGGTAAGAAGATTTTTTTAAATACTATTAGTGTATTTGAGTATT
66 AGTGATGCCTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATGAATATT
**
82480 TATAAAATATTTTCAATACAATAAAAATTTTCTTTTTGTTAATAAAAAGTAAAAGTTAATTAATT
131 TATAAAATAACTTCAATACAATAAAAATTTTCTTTTTGTTAATAAAAAGTAAAAGTTAATTAATT
* *
82545 AAAAATAATAATAATAT-AAAAAAGGAAA-TTTTATCTAATGATGAAATTTTAAAAGTATTCCGA
1 AAAAATAATAA-AATATCAAAAAAGGAAATTTTTATCCAATGATGAAA-TTCAAAAGTATTCCGA
* * * * *
82608 GTAGTGATGCTTTACGAGATCCCTAAGTGAGAAGATTTTTTTAAATATTACCAGTGTA-ATGAAA
64 GTAGTGATGC-CTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATG-AA
*
82672 TATTTATATAAA-AACTTCAATATAATAAAAATT
127 TATTTATA-AAATAACTTCAATACAATAAAAATT
82705 CCTTTTTCTT
Statistics
Matches: 135, Mismatches: 20, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
194 16 0.12
195 47 0.35
196 69 0.51
197 3 0.02
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (195 bp):
AAAAATAATAAAATATCAAAAAAGGAAATTTTTATCCAATGATGAAATTCAAAAGTATTCCGAGT
AGTGATGCCTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATGAATATT
TATAAAATAACTTCAATACAATAAAAATTTTCTTTTTGTTAATAAAAAGTAAAAGTTAATTAATT
Found at i:82763 original size:196 final size:194
Alignment explanation
Indices: 82350--82763 Score: 430
Period size: 196 Copynumber: 2.1 Consensus size: 194
82340 TAATATTACC
* * *
82350 AAAAATAATAAAATGTC-AGAAAAGGAAATTTTTATCCGATGATGAAATTCAAAGGTATTCCGAG
1 AAAAATAATAAAAT-TCTAAAAAAGGAAATTTTTATCCAATGATGAAATTCAAAAGTATTCCGAG
* * ** * *
82414 TAGTGATGCCTAAGAAATCTCTAGGTAAGAAGATTTTTTTAAATACTATTAGTGTATTTGAGTAT
65 TAGTGATGCCTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATGAATAT
** * * **
82479 TTATAAAATATTTTCAATACAATAAAAATTTTCTTTTTGTTAATAAAAAGTAAAAGTTAATTAAT
130 TTATAAAATAACTTCAATACAATAAAAATTTCCTTTTTCTT-ATAAAAAGTAAAAGTTAAAAAAT
*
82544 T
194 A
* * *
82545 AAAAATAATAATAA-TATAAAAAAGGAAA-TTTTATCTAATGATGAAATTTTAAAAGTATTCCGA
1 AAAAATAATAA-AATTCTAAAAAAGGAAATTTTTATCCAATGATGAAA-TTCAAAAGTATTCCGA
* * * * *
82608 GTAGTGATGCTTTACGAGATCCCTAAGTGAGAAGATTTTTTTAAATATTACCAGTGTA-ATGAAA
64 GTAGTGATGC-CTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATG-AA
* * *
82672 TATTTATATAAA-AACTTCAATATAATAAAAA-TTCCTTTTTCTT-TCAAAAATTTAAA-TTAAA
127 TATTTATA-AAATAACTTCAATACAATAAAAATTTCCTTTTTCTTAT-AAAAAGTAAAAGTTAAA
82733 AAATAA
190 AAAT-A
82739 AAAAATTAATAAAATTTCTAAAAAA
1 AAAAA-TAATAAAA-TTCTAAAAAA
82764 ATAAAATAAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
193 8 0.04
194 33 0.18
195 63 0.35
196 73 0.41
197 3 0.02
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (194 bp):
AAAAATAATAAAATTCTAAAAAAGGAAATTTTTATCCAATGATGAAATTCAAAAGTATTCCGAGT
AGTGATGCCTAAGAAATCCCTAAGTAAGAAGATTTTTTTAAATACTACCAGTGTATATGAATATT
TATAAAATAACTTCAATACAATAAAAATTTCCTTTTTCTTATAAAAAGTAAAAGTTAAAAAATA
Found at i:83641 original size:60 final size:60
Alignment explanation
Indices: 83576--83693 Score: 182
Period size: 60 Copynumber: 2.0 Consensus size: 60
83566 CAAATATATT
* * *
83576 TGTTTCAACCCAATTCAAAATGGCTTACTCCAAACCAAATCCATTAACAAATAAATCTCA
1 TGTTTCAACCCAACTCAAAATGGCCTACTCCAAACCAAATCCACTAACAAATAAATCTCA
* * *
83636 TGTTTCGACCCAACTCAAAATGGCCTACTTCAAACCTAATCCACTAACAAATAAATCT
1 TGTTTCAACCCAACTCAAAATGGCCTACTCCAAACCAAATCCACTAACAAATAAATCT
83694 TTACAACTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.40, C:0.28, G:0.06, T:0.26
Consensus pattern (60 bp):
TGTTTCAACCCAACTCAAAATGGCCTACTCCAAACCAAATCCACTAACAAATAAATCTCA
Found at i:84123 original size:2 final size:2
Alignment explanation
Indices: 84116--84146 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
84106 TACATAGCCT
84116 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
84147 TATGTTTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92791 original size:10 final size:10
Alignment explanation
Indices: 92776--92818 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
92766 TAATTTTCTG
92776 ATTTATATTT
1 ATTTATATTT
*
92786 ATTTATTTTTT
1 ATTTA-TATTT
*
92797 ATTTATATTA
1 ATTTATATTT
*
92807 ATTTGTATTT
1 ATTTATATTT
92817 AT
1 AT
92819 CTTTGAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATATTT
Found at i:100803 original size:31 final size:30
Alignment explanation
Indices: 100765--100875 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
100755 TTTAAGAATC
* *
100765 AAATTCTTACAAATCTAAGTTCTTGATAATG
1 AAATTCTTGCAAATCTAAGTT-TTGATAATT
* * * *
100796 AAATTCTTGCAAAACCAAAATTTTGAAAATT
1 AAATTCTTGC-AAATCTAAGTTTTGATAATT
* * *
100827 AAATTCATGCGAATGTAAGTTTTTGATAATT
1 AAATTCTTGCAAATCTAAG-TTTTGATAATT
*
100858 AAATTCTTGCAAAACTAA
1 AAATTCTTGCAAATCTAA
100876 AATCTTGCGA
Statistics
Matches: 61, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
30 4 0.07
31 49 0.80
32 8 0.13
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (30 bp):
AAATTCTTGCAAATCTAAGTTTTGATAATT
Found at i:100818 original size:62 final size:62
Alignment explanation
Indices: 100751--100878 Score: 168
Period size: 62 Copynumber: 2.1 Consensus size: 62
100741 CAAAGCTTTG
*
100751 AAATTTT-AAGAATCAAATTCTTACAAATCTAAGTTCTTGATAATGAAATTCTTGCAAAACCA
1 AAATTTTGAA-AATCAAATTCATACAAATCTAAGTTCTTGATAATGAAATTCTTGCAAAACCA
* * * * * * *
100813 AAATTTTGAAAATTAAATTCATGCGAATGTAAGTTTTTGATAATTAAATTCTTGCAAAACTA
1 AAATTTTGAAAATCAAATTCATACAAATCTAAGTTCTTGATAATGAAATTCTTGCAAAACCA
100875 AAAT
1 AAAT
100879 CTTGCGAAAC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
62 55 0.96
63 2 0.04
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (62 bp):
AAATTTTGAAAATCAAATTCATACAAATCTAAGTTCTTGATAATGAAATTCTTGCAAAACCA
Found at i:100988 original size:19 final size:19
Alignment explanation
Indices: 100964--101003 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
100954 TCTGAATATT
100964 AAAATTCTTGCAAAACTGA
1 AAAATTCTTGCAAAACTGA
* * *
100983 AAAATTTTTGCGAATCTGA
1 AAAATTCTTGCAAAACTGA
101002 AA
1 AA
101004 TTCTTACGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (19 bp):
AAAATTCTTGCAAAACTGA
Found at i:101035 original size:15 final size:15
Alignment explanation
Indices: 101017--101050 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
101007 TTACGAATCT
*
101017 CAAACTTTTGAATTG
1 CAAACCTTTGAATTG
*
101032 CAAACCTTTGAATTT
1 CAAACCTTTGAATTG
101047 CAAA
1 CAAA
101051 ATTGTGATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (15 bp):
CAAACCTTTGAATTG
Found at i:101401 original size:30 final size:30
Alignment explanation
Indices: 101331--101408 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
101321 TCGAGGCCCA
101331 ATTTTATTTATTTATTTATTATTTTATCCTTG
1 ATTTT-TTTATTT-TTTATTATTTTATCCTTG
* **
101363 -TTTATTTATTTTTT-TTATTTTATGGTTAG
1 ATTTTTTTATTTTTTATTATTTTATCCTT-G
*
101392 ATTTTTTTATGTTTTAT
1 ATTTTTTTATTTTTTAT
101409 CTTTATCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 11 0.29
29 4 0.11
30 19 0.50
31 4 0.11
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (30 bp):
ATTTTTTTATTTTTTATTATTTTATCCTTG
Found at i:101479 original size:10 final size:10
Alignment explanation
Indices: 101464--101509 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
101454 TTATTAGTTT
101464 TTTATTTATA
1 TTTATTTATA
*
101474 TTTATTTATC
1 TTTATTTATA
101484 TTTGATTTATA
1 TTT-ATTTATA
* *
101495 TTAATTTTTA
1 TTTATTTATA
101505 TTTAT
1 TTTAT
101510 CTTTGAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTATTTATA
Found at i:101504 original size:97 final size:94
Alignment explanation
Indices: 101331--101513 Score: 203
Period size: 97 Copynumber: 1.9 Consensus size: 94
101321 TCGAGGCCCA
** * * *
101331 ATTTTATTTATTTATTTATTATTTTATCCTTGTTTATTTATTTTTTTTATTTTATGGTTAGATTT
1 ATTTTATTTATTTATGGATTATTTTATCATTGTTTATTTATTTTATTTATTTTATGCTTAGATTT
*
101396 TTTTATGTTTTATCTTTATCTTTACATGTTG
66 TTTAATGTTTTA--TTTATCTTTACATGTTG
* *
101427 ATTTTCATTTATTTATGGATTATTTTATTATTAGTTT-TTTATTTATATTTA-TTTAT-CTTTGA
1 ATTTT-ATTTATTTATGGATTATTTTATCATT-GTTTATTTATTT-TATTTATTTTATGCTTAGA
101489 TTTATATTAAT-TTTTATTTATCTTT
63 TTT-T-TTAATGTTTTATTTATCTTT
101514 GAATATTATT
Statistics
Matches: 74, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
95 9 0.12
96 12 0.16
97 40 0.54
98 13 0.18
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.68
Consensus pattern (94 bp):
ATTTTATTTATTTATGGATTATTTTATCATTGTTTATTTATTTTATTTATTTTATGCTTAGATTT
TTTAATGTTTTATTTATCTTTACATGTTG
Found at i:101523 original size:27 final size:26
Alignment explanation
Indices: 101465--101523 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
101455 TATTAGTTTT
* *
101465 TTATTTATATTTATTTATCTTTGATT
1 TTATTAATATTTATTTATCTTTGATA
*
101491 TATATTAATTTTTATTTATCTTTGAATA
1 T-TATTAATATTTATTTATCTTTG-ATA
101519 TTATT
1 TTATT
101524 TGATTAGCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 24 0.86
28 3 0.11
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (26 bp):
TTATTAATATTTATTTATCTTTGATA
Found at i:104546 original size:26 final size:26
Alignment explanation
Indices: 104517--104568 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
104507 TATGTGTGCC
*
104517 TTGTTTTCATTATATATAAGAAAATA
1 TTGTTTTCATCATATATAAGAAAATA
* *
104543 TTGTTTTTATCATATATAAGGAAATA
1 TTGTTTTCATCATATATAAGAAAATA
104569 AGTATTTGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (26 bp):
TTGTTTTCATCATATATAAGAAAATA
Found at i:104580 original size:28 final size:26
Alignment explanation
Indices: 104528--104580 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
104518 TGTTTTCATT
* *
104528 ATATATAAGAAAATATTGTTTTTATC
1 ATATATAAGAAAATAGTATTTTTATC
*
104554 ATATATAAGGAAATAAGTATTTGTTAT
1 ATATATAAGAAAAT-AGTATTT-TTAT
104581 TCTTCACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 13 0.59
27 5 0.23
28 4 0.18
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (26 bp):
ATATATAAGAAAATAGTATTTTTATC
Found at i:108292 original size:29 final size:29
Alignment explanation
Indices: 108259--108320 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
108249 TATATTATAA
* *
108259 AATTTTAAGGGAAATAATATTTAATTAGT
1 AATTTTAAGGGAAACAATACTTAATTAGT
****
108288 AATTTTTTTTGAAACAATACTTAATTAGT
1 AATTTTAAGGGAAACAATACTTAATTAGT
108317 AATT
1 AATT
108321 AATTGACATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.45
Consensus pattern (29 bp):
AATTTTAAGGGAAACAATACTTAATTAGT
Found at i:110217 original size:7 final size:7
Alignment explanation
Indices: 110202--110233 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
110192 AAATTGATAT
*
110202 TTTTATA
1 TTTTGTA
110209 TTTTGTA
1 TTTTGTA
110216 TTTTGTA
1 TTTTGTA
110223 TTTTGTA
1 TTTTGTA
110230 TTTT
1 TTTT
110234 TGGCACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (7 bp):
TTTTGTA
Found at i:111097 original size:26 final size:26
Alignment explanation
Indices: 111064--111118 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
111054 TATAATTTTA
* *
111064 TATCCAATTAATCCGAAATCAGCATT
1 TATCCAATTAACCCCAAATCAGCATT
*
111090 TATCCAATTAACCCCAAATCATCATT
1 TATCCAATTAACCCCAAATCAGCATT
111116 TAT
1 TAT
111119 GACAAATCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.04, T:0.33
Consensus pattern (26 bp):
TATCCAATTAACCCCAAATCAGCATT
Found at i:112735 original size:15 final size:16
Alignment explanation
Indices: 112708--112737 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
112698 CAATTTTAAA
112708 AAAAAATAGAAGAGTT
1 AAAAAATAGAAGAGTT
112724 AAAAAATA-AAGAGT
1 AAAAAATAGAAGAGT
112738 AAATTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (16 bp):
AAAAAATAGAAGAGTT
Found at i:113790 original size:29 final size:30
Alignment explanation
Indices: 113720--113793 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
113710 TGCATTTGAA
* * *
113720 ATAAAAATTTATTTGGATATAAATCAAAAT
1 ATAAAAACTTATTTAGATATAAATAAAAAT
** *
113750 ATAAGTACTTATTTAGATA-CAATAAAAAT
1 ATAAAAACTTATTTAGATATAAATAAAAAT
*
113779 ATAAAAAGTTATTTA
1 ATAAAAACTTATTTA
113794 ACAAATGAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (30 bp):
ATAAAAACTTATTTAGATATAAATAAAAAT
Found at i:119974 original size:24 final size:25
Alignment explanation
Indices: 119946--119998 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
119936 ATTTTTATTA
*
119946 ATTTTTGT-ATTATCATT-AAGTTT
1 ATTTTTTTAATTATCATTAAAGTTT
**
119969 ATTTTTTTAATTATTTTTAAAGTTT
1 ATTTTTTTAATTATCATTAAAGTTT
119994 ATTTT
1 ATTTT
119999 AAAAATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.28
24 7 0.28
25 11 0.44
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (25 bp):
ATTTTTTTAATTATCATTAAAGTTT
Found at i:121459 original size:47 final size:48
Alignment explanation
Indices: 121301--122048 Score: 449
Period size: 47 Copynumber: 15.4 Consensus size: 48
121291 TTTAGTATAT
*
121301 GCTCAACAACTTTAAAAATTTCATCTTAAAAAGGGCTCATCTCAGCAGAG
1 GCTCAACAACTTT-AAAATCTCATCTTAAAAA-GGCTCATCTCAGCAGAG
* *
121351 GCTCAACAACTTTAAAAATCTCATCTTAAAAAGGGCTCCTCTTAGCAGAG
1 GCTCAACAACTTT-AAAATCTCATCTTAAAAA-GGCTCATCTCAGCAGAG
* * * *
121401 GCTCAATAACTTTAAAATCTC-TTTTGGAAAA-GCTCTTCTCAGCAGAG
1 GCTCAACAACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
* * * * *
121448 GCTTAACAACTTTAAAATCTCATC-TAGAAAA-GTTCCTCTCAACAAAG
1 GCTCAACAACTTTAAAATCTCATCTTA-AAAAGGCTCATCTCAGCAGAG
** * * *
121495 GCTCAACAAACTTCTCAGCAGAGGCTTAACAAT-TTTAAAA-TCTCATCTAGAAAAGTTCCTTTC
1 GCTCAAC-AACTT-T-A--A-AATC-T--C-ATCTTAAAAAGGCTCATCT----CAG-------C
121558 AACAGAG
45 -A--GAG
* *
121565 GCTCAACAAACTTTAAAATC-CATCTTGAAAAA-ACTCCTCTCAGCAGAG
1 GCTCAAC-AACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
* * *
121613 GCTCAACAACTTTAAAATCTCATC-TAAAAA-GCTCCTTTCAGCAAAG
1 GCTCAACAACTTTAAAATCTCATCTTAAAAAGGCTCATCTCAGCAGAG
* * * *
121659 GCTTAACAACTTTAAAAAT-TC-TCTTGAAAAA-ACTCCTCTAAGCAGAG
1 GCTCAACAACTTT-AAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
** * * * *
121706 GCTCAACAACTTTAAAATCTTTTTTTGAAAAGGGCTC--CTC-TCAGTG
1 GCTCAACAACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
* * * **
121752 GCTCAACAACTTTAAAATTTCA-CTTGAGAAA-GCTCCTCTCAATAGAG
1 GCTCAACAACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
* * *
121799 GCTCAACAACTTTAAAAAT-TC-TCTTTAAAAA-GCTCTTTTAAGCAGAG
1 GCTCAACAACTTT-AAAATCTCATC-TTAAAAAGGCTCATCTCAGCAGAG
* *
121846 GCTCAACAACTTAAAAATCTCAT-TTGAAAAA--CTCATCTTAGCAGAG
1 GCTCAACAACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
* * *
121892 GTTCAACAACTTTAAAATTTCATCTTAAAAA-GCTTC-TCTCAGTAGAG
1 GCTCAACAACTTTAAAATCTCATCTTAAAAAGGC-TCATCTCAGCAGAG
* * * *
121939 GCTCAACAACTTTAAAATTTTAT-TTGAAAA-GCTCCTCTCAGCAGAG
1 GCTCAACAACTTTAAAATCTCATCTTAAAAAGGCTCATCTCAGCAGAG
**
121985 GCTCAACAACTTTAAAATCTCAT-TTGAAAAA-GCTCATCTCAATAGAG
1 GCTCAACAACTTTAAAATCTCATCTT-AAAAAGGCTCATCTCAGCAGAG
*
122032 GCTTAACAACTTTAAAA
1 GCTCAACAACTTTAAAA
122049 ATTCTCTTGA
Statistics
Matches: 564, Mismatches: 83, Indels: 105
0.75 0.11 0.14
Matches are distributed among these distances:
44 4 0.01
45 10 0.02
46 149 0.26
47 225 0.40
48 41 0.07
49 16 0.03
50 61 0.11
51 1 0.00
52 1 0.00
53 2 0.00
54 1 0.00
56 10 0.02
57 3 0.01
58 2 0.00
60 3 0.01
61 3 0.01
62 10 0.02
65 2 0.00
66 1 0.00
67 1 0.00
68 2 0.00
69 1 0.00
70 15 0.03
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.28
Consensus pattern (48 bp):
GCTCAACAACTTTAAAATCTCATCTTAAAAAGGCTCATCTCAGCAGAG
Found at i:121548 original size:70 final size:70
Alignment explanation
Indices: 121435--121577 Score: 259
Period size: 70 Copynumber: 2.0 Consensus size: 70
121425 TGGAAAAGCT
121435 CTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTAGAAAAGTTCCTCTCAACAAAGGCTCA
1 CTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTAGAAAAGTTCCTCTCAACAAAGGCTCA
121500 ACAAA
66 ACAAA
* * *
121505 CTTCTCAGCAGAGGCTTAACAATTTTAAAATCTCATCTAGAAAAGTTCCTTTCAACAGAGGCTCA
1 CTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTAGAAAAGTTCCTCTCAACAAAGGCTCA
121570 ACAAA
66 ACAAA
121575 CTT
1 CTT
121578 TAAAATCCAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (70 bp):
CTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTAGAAAAGTTCCTCTCAACAAAGGCTCA
ACAAA
Found at i:121614 original size:165 final size:165
Alignment explanation
Indices: 121340--121667 Score: 441
Period size: 165 Copynumber: 2.0 Consensus size: 165
121330 AAAGGGCTCA
*
121340 TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTAAAAAGGGCTCCTCTTAGCAGAGGCTC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTAAAAA-GGCTCCTCTTAACAGAGGCTC
* * * * * *
121405 AATAACTTTAAAATCTCTTTTGGAAAAGCTCTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCA
65 AAAAACTTTAAAATCTCTCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCA
*
121470 TCTAGAAAAGTTCCTCTCAACAAAGGCTCAACAAACT
130 TCTA-AAAAGCTCCTCTCAACAAAGGCTCAACAAACT
* * *
121507 TCTCAGCAGAGGCTTAACAA-TTTTAAAATCTCATC-TAGAAAA-GTTCCT-TTCAACAGAGGCT
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTA-AAAAGGCTCCTCTT-AACAGAGGCT
121568 CAACAAACTTTAAAATC-CATCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAATC
64 CAA-AAACTTTAAAATCTC-TCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAATC
* * *
121632 TCATCTAAAAAGCTCCTTTCAGCAAAGGCTTAACAA
127 TCATCTAAAAAGCTCCTCTCAACAAAGGCTCAACAA
121668 CTTTAAAAAT
Statistics
Matches: 143, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
163 2 0.01
164 43 0.30
165 61 0.43
166 18 0.13
167 19 0.13
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (165 bp):
TCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTAAAAAGGCTCCTCTTAACAGAGGCTCA
AAAACTTTAAAATCTCTCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCAT
CTAAAAAGCTCCTCTCAACAAAGGCTCAACAAACT
Found at i:121624 original size:117 final size:117
Alignment explanation
Indices: 121394--121621 Score: 289
Period size: 117 Copynumber: 1.9 Consensus size: 117
121384 GGCTCCTCTT
* * * * * *
121394 AGCAGAGGCTCAATAACTTTAAAATCTCTTTTGGAAAAGCTCTTCTCAGCAGAGGCTTAACAACT
1 AGCAGAGGCTCAACAACTTTAAAATCTCATCTAGAAAAGCTCTTCTCAACAGAGGCTCAACAACT
**
121459 TTAAAATCTCATCTAGAAAAGTTCCTCTCAACAAAGGCTCAACAAACTTCTC
66 TTAAAATCTCATCTAGAAAAACTCCTCTCAACAAAGGCTCAACAAACTTCTC
* * *
121511 AGCAGAGGCTTAACAATTTTAAAATCTCATCTAGAAAAGTTCCTT-TCAACAGAGGCTCAACAAA
1 AGCAGAGGCTCAACAACTTTAAAATCTCATCTAGAAAAGCT-CTTCTCAACAGAGGCTCAAC-AA
* * *
121575 CTTTAAAATC-CATCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAA
64 CTTTAAAATCTCATCTAG-AAAAACTCCTCTCAACAAAGGCTCAACAA
121622 CTTTAAAATC
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
117 54 0.57
118 40 0.43
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.26
Consensus pattern (117 bp):
AGCAGAGGCTCAACAACTTTAAAATCTCATCTAGAAAAGCTCTTCTCAACAGAGGCTCAACAACT
TTAAAATCTCATCTAGAAAAACTCCTCTCAACAAAGGCTCAACAAACTTCTC
Found at i:121705 original size:93 final size:93
Alignment explanation
Indices: 121511--122062 Score: 550
Period size: 93 Copynumber: 5.9 Consensus size: 93
121501 CAAACTTCTC
* * * * *
121511 AGCAGAGGCTTAACAATTTTAAAATCTCATCTAGAAAAGTTCCTTTCAACAGAGGCTCAACAAAC
1 AGCAGAGGCTCAACAACTTTAAAATCTCATCTA-AAAAGCTCCTCTCAGCAGAGGCTCAAC-AAC
* *
121576 TTT-AAAATCCATCTTGAAAAAACTCCTCTC
64 TTTAAAAATTC-TCTTGAAAAAACTCCTCTA
* * *
121606 AGCAGAGGCTCAACAACTTTAAAATCTCATCTAAAAAGCTCCTTTCAGCAAAGGCTTAACAACTT
1 AGCAGAGGCTCAACAACTTTAAAATCTCATCTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTT
121671 TAAAAATTCTCTTGAAAAAACTCCTCTA
66 TAAAAATTCTCTTGAAAAAACTCCTCTA
** * * *
121699 AGCAGAGGCTCAACAACTTTAAAATCTTTTTTTGAAAAGGGCTCCTCT---CAGTGGCTCAACAA
1 AGCAGAGGCTCAACAACTTTAAAATC-TCATCT-AAAA-AGCTCCTCTCAGCAGAGGCTCAACAA
* * * *
121761 CTTTAAAATTTCACTTGAGAAAGCTCCTCTCA
63 CTTTAAAAATTCTCTTGAAAAAACTCCTCT-A
* * * * *
121793 A-TAGAGGCTCAACAACTTTAAAAATTCTC-TTTAAAAAGCTCTTTTAAGCAGAGGCTCAACAAC
1 AGCAGAGGCTCAACAACTTT-AAAA-TCTCATCTAAAAAGCTCCTCTCAGCAGAGGCTCAACAAC
* *
121856 -TTAAAAA-TCTCATTTG-AAAAACTCATCTT
64 TTTAAAAATTCTC--TTGAAAAAACTCCTCTA
* * * *
121885 AGCAGAGGTTCAACAACTTTAAAATTTCATCTTAAAAAGCTTCTCTCAGTAGAGGCTCAACAACT
1 AGCAGAGGCTCAACAACTTTAAAATCTCATC-TAAAAAGCTCCTCTCAGCAGAGGCTCAACAACT
* * * *
121950 TT-AAAATTTTATTTG-AAAAGCTCCTCTC
65 TTAAAAATTCT-CTTGAAAAAACTCCTCTA
* * ** *
121978 AGCAGAGGCTCAACAACTTTAAAATCTCATTTGAAAAAGCTCATCTCAATAGAGGCTTAACAACT
1 AGCAGAGGCTCAACAACTTTAAAATCTCATCT-AAAAAGCTCCTCTCAGCAGAGGCTCAACAACT
122043 TTAAAAATTCTCTTGAAAAA
65 TTAAAAATTCTCTTGAAAAA
122063 GCTTGTTTCA
Statistics
Matches: 381, Mismatches: 55, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
91 9 0.02
92 14 0.04
93 243 0.64
94 71 0.19
95 37 0.10
96 7 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (93 bp):
AGCAGAGGCTCAACAACTTTAAAATCTCATCTAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTT
TAAAAATTCTCTTGAAAAAACTCCTCTA
Found at i:122059 original size:47 final size:47
Alignment explanation
Indices: 121507--122087 Score: 489
Period size: 47 Copynumber: 12.4 Consensus size: 47
121497 TCAACAAACT
* * * * *
121507 TCTCAGCAGAGGCTTAACAA-TTTTAAAATCTCATCTAG-AAAAGTTCC
1 TCTCAACAGAGGCTCAACAACTTTAAAAAT-TC-TCTTGAAAAAGCTCC
* * *
121554 TTTCAACAGAGGCTCAACAAACTTT-AAAATCCATCTTGAAAAAACTCC
1 TCTCAACAGAGGCTCAAC-AACTTTAAAAATTC-TCTTGAAAAAGCTCC
*
121602 TCTCAGCAGAGGCTCAACAACTTT-AAAA-TCTCATCT-AAAAAGCTCC
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTC-T-TGAAAAAGCTCC
* * * * *
121648 TTTCAGCAAAGGCTTAACAACTTTAAAAATTCTCTTGAAAAAACTCC
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTGAAAAAGCTCC
* * * *
121695 TCT-AAGCAGAGGCTCAACAACTTTAAAATCTTTTTTTGAAAAGGGCTCC
1 TCTCAA-CAGAGGCTCAACAACTTTAAAA-ATTCTCTTGAAAA-AGCTCC
* * * *
121744 TCT---CAGTGGCTCAACAACTTTAAAATTTCACTTGAGAAAGCTCC
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTGAAAAAGCTCC
* *
121788 TCTCAATAGAGGCTCAACAACTTTAAAAATTCTCTTTAAAAAGCT-C
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTGAAAAAGCTCC
* * *
121834 TTTTAAGCAGAGGCTCAACAAC-TTAAAAA-TCTCATTTGAAAAA-CTCA
1 TCTCAA-CAGAGGCTCAACAACTTTAAAAATTCTC--TTGAAAAAGCTCC
* * * * *
121881 TCTTAGCAGAGGTTCAACAACTTTAAAATTTCATCTT-AAAAAGCTTC
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTC-TCTTGAAAAAGCTCC
** * *
121928 TCTCAGTAGAGGCTCAACAACTTT-AAAATTTTATTTG-AAAAGCTCC
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCT-CTTGAAAAAGCTCC
* *
121974 TCTCAGCAGAGGCTCAACAACTTT-AAAA-TCTCATTTGAAAAAGCTCA
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTC--TTGAAAAAGCTCC
* * **
122021 TCTCAATAGAGGCTTAACAACTTTAAAAATTCTCTTGAAAAAGCTTG
1 TCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTGAAAAAGCTCC
* *
122068 TTTCAACAGAAGCTCAACAA
1 TCTCAACAGAGGCTCAACAA
122088 AGCTCCTTTC
Statistics
Matches: 437, Mismatches: 68, Indels: 58
0.78 0.12 0.10
Matches are distributed among these distances:
44 8 0.02
45 17 0.04
46 133 0.30
47 213 0.49
48 50 0.11
49 16 0.04
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.29
Consensus pattern (47 bp):
TCTCAACAGAGGCTCAACAACTTTAAAAATTCTCTTGAAAAAGCTCC
Found at i:122066 original size:140 final size:140
Alignment explanation
Indices: 121507--122065 Score: 584
Period size: 140 Copynumber: 4.0 Consensus size: 140
121497 TCAACAAACT
* * * * *
121507 TCTCAGCAGAGGCTTAACAA-TTTTAAAA-TCTCATCTAGAAAAGTTCCTTTCAA-CAGAGGCTC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATTCT-AT-TTGAAAAGCTCCTCT-AAGCAGAGGCTC
* *
121569 AACAAACTTTAAAATC-CATCTTGAAAAAACTCCTCTCAGCAGAGGCTCAACAACTTT-AAAA-T
63 AAC-AACTTTAAAATCTCAT-TTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATT
121631 CTCATCTAAAAAGCTCC
126 CTC-T-TAAAAAGCTCC
* * * * *
121648 TTTCAGCAAAGGCTTAACAACTTTAAAAATTCT-CTTGAAAAAACTCCTCTAAGCAGAGGCTCAA
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATTCTATTTG-AAAAGCTCCTCTAAGCAGAGGCTCAA
** * * * * *
121712 CAACTTTAAAATCTTTTTTTGAAAAGGGCTC--CTC-TCAGTGGCTCAACAACTTTAAAATTTCA
65 CAACTTTAAAATC-TCATTTGAAAA-AGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCT
*
121774 CTTGAGAAAGCTCC
128 CTT-AAAAAGCTCC
** * * * *
121788 TCTCAATAGAGGCTCAACAACTTTAAAAATTCTCTTTAAAAAGCTCTTTTAAGCAGAGGCTCAAC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATTCTATTTGAAAAGCTCCTCTAAGCAGAGGCTCAAC
* * * *
121853 AACTTAAAAATCTCATTTGAAAAA-CTCATCTTAGCAGAGGTTCAACAACTTTAAAATTTCATCT
66 AACTTTAAAATCTCATTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTC-TCT
*
121917 TAAAAAGCTTC
130 TAAAAAGCTCC
* * *
121928 TCTCAGTAGAGGCTCAACAACTTT-AAAATTTTATTTGAAAAGCTCCTCTCAGCAGAGGCTCAAC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAATTCTATTTGAAAAGCTCCTCTAAGCAGAGGCTCAAC
** *
121992 AACTTTAAAATCTCATTTGAAAAAGCTCATCTCAATAGAGGCTTAACAACTTTAAAAATTCTCTT
66 AACTTTAAAATCTCATTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCTCTT
122057 GAAAAAGCT
131 -AAAAAGCT
122066 TGTTTCAACA
Statistics
Matches: 349, Mismatches: 52, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
137 3 0.01
139 90 0.26
140 188 0.54
141 54 0.15
142 11 0.03
143 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (140 bp):
TCTCAGCAGAGGCTCAACAACTTTAAAAATTCTATTTGAAAAGCTCCTCTAAGCAGAGGCTCAAC
AACTTTAAAATCTCATTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCTCTT
AAAAAGCTCC
Found at i:122235 original size:49 final size:49
Alignment explanation
Indices: 122086--122323 Score: 329
Period size: 49 Copynumber: 4.9 Consensus size: 49
122076 GAAGCTCAAC
* * *
122086 AAAGCTCCTTTCAACGGAGGCTCAACAACTTT-AAAATCT-ATCTTGAA
1 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAA
* * *
122133 AAAGCTCCTCTCAACAGAGGCTCAATAACTTT-AAAATATCATCTTGAA
1 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAA
* * * *
122181 AAAGCTCTTATCAGCAGAAGCTCAACAACTTTAAAAATCTCATCTTGGA
1 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAA
* *
122230 AAAGCTCCTCTCAGCAGATGCTCAACAACTTTAAAAATCTCATCTTAAA
1 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAA
* *
122279 AAAGTTCATCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCT
1 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCT
122324 GTTCTTAAAA
Statistics
Matches: 170, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 35 0.21
48 35 0.21
49 100 0.59
ACGTcount: A:0.38, C:0.24, G:0.11, T:0.27
Consensus pattern (49 bp):
AAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAA
Found at i:132895 original size:5 final size:5
Alignment explanation
Indices: 132887--132917 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
132877 TTTTTTATTT
*
132887 TTTTG TTTTT TTTTG TTTTG TTTTG TTTTG T
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG T
132918 ATTATACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (5 bp):
TTTTG
Found at i:132897 original size:15 final size:15
Alignment explanation
Indices: 132876--132917 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
132866 GAAAAAAGTA
*
132876 TTTTTTTATTTTTTTG
1 TTTTTTT-TTGTTTTG
132892 TTTTTTTTTGTTTTG
1 TTTTTTTTTGTTTTG
*
132907 TTTTGTTTTGT
1 TTTTTTTTTGT
132918 ATTATACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTGTTTTG
Found at i:134578 original size:23 final size:24
Alignment explanation
Indices: 134552--134603 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
134542 ATTTTTATTA
134552 ATTTTTGTA-TTATCATT-AAGTTT
1 ATTTTT-TAGTTATCATTAAAGTTT
**
134575 ATTTTTTAGTTATTTTTAAAGTTT
1 ATTTTTTAGTTATCATTAAAGTTT
134599 ATTTT
1 ATTTT
134604 AAAAATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 2 0.08
23 12 0.48
24 11 0.44
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (24 bp):
ATTTTTTAGTTATCATTAAAGTTT
Found at i:137568 original size:12 final size:12
Alignment explanation
Indices: 137551--137575 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
137541 CAAGCTCTGT
137551 TTTTGAAGAAAA
1 TTTTGAAGAAAA
137563 TTTTGAAGAAAA
1 TTTTGAAGAAAA
137575 T
1 T
137576 ATTTTTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (12 bp):
TTTTGAAGAAAA
Found at i:138731 original size:2 final size:2
Alignment explanation
Indices: 138722--138750 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
138712 TATATTAACC
138722 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
138751 ATGGGGTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:142637 original size:32 final size:32
Alignment explanation
Indices: 142596--142660 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
142586 ATCAAGAAGA
142596 TGGTTCAATATTTGATTAAGTTTGGGTCTGTT
1 TGGTTCAATATTTGATTAAGTTTGGGTCTGTT
142628 TGGTTCAATATTTGATTAAGTTTGGGTCTGTT
1 TGGTTCAATATTTGATTAAGTTTGGGTCTGTT
142660 T
1 T
142661 TTGATAACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.06, G:0.25, T:0.51
Consensus pattern (32 bp):
TGGTTCAATATTTGATTAAGTTTGGGTCTGTT
Found at i:145908 original size:6 final size:6
Alignment explanation
Indices: 145899--145940 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
145889 ATAGCTGCTG
145899 CTGCCT CTGCCT CTGCCT CTGGTGCCT CTGCCT CTGCCT CTG
1 CTGCCT CTGCCT CTGCCT C---TGCCT CTGCCT CTGCCT CTG
145941 GTGCCTCTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 27 0.82
9 6 0.18
ACGTcount: A:0.00, C:0.45, G:0.21, T:0.33
Consensus pattern (6 bp):
CTGCCT
Found at i:145924 original size:21 final size:21
Alignment explanation
Indices: 145900--145949 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
145890 TAGCTGCTGC
145900 TGCCTCTGCCTCTGCCTCTGG
1 TGCCTCTGCCTCTGCCTCTGG
145921 TGCCTCTGCCTCTGCCTCTGG
1 TGCCTCTGCCTCTGCCTCTGG
145942 TGCCTCTG
1 TGCCTCTG
145950 TCCGTGGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.00, C:0.42, G:0.24, T:0.34
Consensus pattern (21 bp):
TGCCTCTGCCTCTGCCTCTGG
Found at i:145949 original size:15 final size:15
Alignment explanation
Indices: 145906--145934 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
145896 CTGCTGCCTC
145906 TGCCTCTGCCTCTGG
1 TGCCTCTGCCTCTGG
145921 TGCCTCTGCCTCTG
1 TGCCTCTGCCTCTG
145935 CCTCTGGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.41, G:0.24, T:0.34
Consensus pattern (15 bp):
TGCCTCTGCCTCTGG
Found at i:148673 original size:13 final size:14
Alignment explanation
Indices: 148655--148684 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
148645 CCCTTATTAC
148655 AAAAAAAAAAA-AG
1 AAAAAAAAAAACAG
148668 AAAAAAAAAAACAG
1 AAAAAAAAAAACAG
148682 AAA
1 AAA
148685 GGGTTTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAG
Found at i:148674 original size:14 final size:14
Alignment explanation
Indices: 148655--148684 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
148645 CCCTTATTAC
148655 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
*
148669 AAAAAAAAAACAGA
1 AAAAAAAAAAAAGA
148683 AA
1 AA
148685 GGGTTTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:155919 original size:23 final size:23
Alignment explanation
Indices: 155893--155938 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
155883 TTCAGAAGTT
155893 TCCTAGGGAGCATCATACAGATA
1 TCCTAGGGAGCATCATACAGATA
155916 TCCTAGGGAGCATCATACAGATA
1 TCCTAGGGAGCATCATACAGATA
155939 ATTCTGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (23 bp):
TCCTAGGGAGCATCATACAGATA
Found at i:161972 original size:81 final size:81
Alignment explanation
Indices: 161837--161987 Score: 284
Period size: 81 Copynumber: 1.9 Consensus size: 81
161827 ATAGGAAATT
*
161837 AAGACTGTCTGGTACTCTTTTGAAAAGGAAAATTCCTCAAAACTAATCTCATTTCATAATATAAT
1 AAGACTGTCTGGTACTCTCTTGAAAAGGAAAATTCCTCAAAACTAATCTCATTTCATAATATAAT
161902 ATAATATAAAATAATA
66 ATAATATAAAATAATA
*
161918 AAGACTGTTTGGTACTCTCTTGAAAAGGAAAATTCCTCAAAACTAATCTCATTTCATAATATAAT
1 AAGACTGTCTGGTACTCTCTTGAAAAGGAAAATTCCTCAAAACTAATCTCATTTCATAATATAAT
161983 ATAAT
66 ATAAT
161988 GAGAGTAGGG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (81 bp):
AAGACTGTCTGGTACTCTCTTGAAAAGGAAAATTCCTCAAAACTAATCTCATTTCATAATATAAT
ATAATATAAAATAATA
Found at i:163518 original size:1 final size:1
Alignment explanation
Indices: 163512--163540 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
163502 TACACAATTT
163512 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
163541 GACAAACAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:173755 original size:24 final size:24
Alignment explanation
Indices: 173723--173772 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
173713 AATCTTTAAC
173723 TTTTAAATGTG-AATTTCTAAAATT
1 TTTTAAATGTGAAATTT-TAAAATT
* *
173747 TTTTTAATGTGAAATTTTGAAATT
1 TTTTAAATGTGAAATTTTAAAATT
173771 TT
1 TT
173773 GGATATGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (24 bp):
TTTTAAATGTGAAATTTTAAAATT
Found at i:174084 original size:17 final size:17
Alignment explanation
Indices: 174062--174119 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
174052 ATTTTTTTAT
174062 TTCTTGCGAATCTTAAA
1 TTCTTGCGAATCTTAAA
*
174079 TTCTTGTGAAT-TTGAAA
1 TTCTTGCGAATCTT-AAA
* * *
174096 TCCTCGCGAATCTATCAA
1 TTCTTGCGAATCT-TAAA
174114 TTCTTG
1 TTCTTG
174120 TTAATTTGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
16 2 0.06
17 21 0.68
18 7 0.23
19 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.41
Consensus pattern (17 bp):
TTCTTGCGAATCTTAAA
Found at i:174141 original size:35 final size:33
Alignment explanation
Indices: 174063--174141 Score: 95
Period size: 35 Copynumber: 2.3 Consensus size: 33
174053 TTTTTTTATT
174063 TCTTGCGAATCTTAAATTCTTGTGAATTTGAAA
1 TCTTGCGAATCTTAAATTCTTGTGAATTTGAAA
* * *
174096 TCCTCGCGAATCTATCAATTCTTGTTAATTTGAAA
1 T-CTTGCGAATCT-TAAATTCTTGTGAATTTGAAA
*
174131 CTCTTACGAAT
1 -TCTTGCGAAT
174142 TCTTGTGAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
33 1 0.03
34 10 0.26
35 26 0.68
36 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.41
Consensus pattern (33 bp):
TCTTGCGAATCTTAAATTCTTGTGAATTTGAAA
Found at i:174355 original size:4 final size:4
Alignment explanation
Indices: 174346--174372 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
174336 TTGATTGGAT
174346 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
174373 TAATTTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:178219 original size:60 final size:59
Alignment explanation
Indices: 178010--178344 Score: 383
Period size: 59 Copynumber: 5.6 Consensus size: 59
178000 TCTTGTGCAG
* * * * **
178010 GGAAAATTGATACTTTCAACTTTT-CTCCAAAAATA--TTCTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCT-CAAAAAAACCTTTTTTTGAAA-ATTATTTTTAA
* *** *
178068 GGAAAATTGATACTTTCAACTTCTCCTC--AAAATTTTATTTTTTGAAAATTCATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCT-TTTTTTGAAAATT-ATTTTTAA
*
178127 GGAAAATTGATACTTTCAACTTTTCCTTAAAAAAACCTTTTTTTGAAAATTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTGAAAATTATTTTTAA
* *
178186 GGAAAATTTATACTTTCAACTTTTTCTCAAAAAAACCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTGAAAA-TTATTTTTAA
* *
178246 GAAAAATTGATACTTTCAACTTTTCCTCGAAAAAAAAATCTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC---AAAAAAA-C-CTTTTTTTGAAAA-TTATTTTTAA
178311 GGAAAATTGATACTTTCAACTTTTCCATCAAAAA
1 GGAAAATTGATACTTTCAACTTTTCC-TCAAAAA
178345 TATTTTTTGG
Statistics
Matches: 240, Mismatches: 23, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
56 3 0.01
58 27 0.11
59 94 0.39
60 48 0.20
61 5 0.02
63 12 0.05
64 1 0.00
65 48 0.20
66 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTTGAAAATTATTTTTAA
Found at i:178396 original size:28 final size:26
Alignment explanation
Indices: 178365--178463 Score: 69
Period size: 28 Copynumber: 3.6 Consensus size: 26
178355 ATTTTTATTT
178365 AAAGAAAATAGAATAATAAAACAAAATA
1 AAAGAAAATAGAATAA-AAAA-AAAATA
*
178393 AAAGTGAAAATA-AATAAAAAAATAATGA
1 AAA--GAAAATAGAATAAAAAAAAAAT-A
* *
178421 AAAGTAAAACAAAAATAAAAAATAAAAT-
1 AAAG-AAAA-TAGAATAAAAAA-AAAATA
178449 AAAGATAAA-AGAATA
1 AAAGA-AAATAGAATA
178464 TTAAATAAAC
Statistics
Matches: 59, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
26 6 0.10
27 9 0.15
28 19 0.32
29 14 0.24
30 11 0.19
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (26 bp):
AAAGAAAATAGAATAAAAAAAAAATA
Found at i:178404 original size:22 final size:21
Alignment explanation
Indices: 178369--178440 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 21
178359 TTATTTAAAG
178369 AAAATAGAATAATAAAACAAAAT
1 AAAAT-GAA-AATAAAACAAAAT
178392 AAAAGTGAAAATAAATA-AAAA-
1 AAAA-TGAAAATAAA-ACAAAAT
178413 AATAATGAAAAGTAAAACAAAAAT
1 AA-AATGAAAA-TAAAAC-AAAAT
178437 AAAA
1 AAAA
178441 AATAAAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
21 9 0.21
22 16 0.38
23 14 0.33
24 3 0.07
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (21 bp):
AAAATGAAAATAAAACAAAAT
Found at i:178423 original size:11 final size:12
Alignment explanation
Indices: 178399--178513 Score: 51
Period size: 12 Copynumber: 9.3 Consensus size: 12
178389 AATAAAAGTG
178399 AAAATAAATAAA
1 AAAATAAATAAA
*
178411 AAAAT-AAT-GA
1 AAAATAAATAAA
* *
178421 AAAGTAAA-ACA
1 AAAATAAATAAA
178432 AAAATAAA-AAA
1 AAAATAAATAAA
178443 TAAAATAAAGATAAA
1 -AAAAT-AA-ATAAA
178458 AGAATATTAAATAAA
1 A-AA-A-TAAATAAA
** *
178473 CCTAATCTAATAAA
1 -AAAAT-AAATAAA
*
178487 TAAATAAATAAA
1 AAAATAAATAAA
*
178499 CAAATAAA-AAA
1 AAAATAAATAAA
178510 AAAA
1 AAAA
178514 CCTGGAGCGA
Statistics
Matches: 79, Mismatches: 13, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
10 5 0.06
11 21 0.27
12 23 0.29
13 6 0.08
14 9 0.11
15 11 0.14
16 3 0.04
17 1 0.01
ACGTcount: A:0.74, C:0.04, G:0.03, T:0.18
Consensus pattern (12 bp):
AAAATAAATAAA
Found at i:178428 original size:18 final size:18
Alignment explanation
Indices: 178404--178463 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
178394 AAGTGAAAAT
*
178404 AAATAAAA-AAATAATGAA
1 AAATAAAACAAA-AATAAA
*
178422 AAGTAAAACAAAAATAAA
1 AAATAAAACAAAAATAAA
* *
178440 AAATAAAATAAAGATAAA
1 AAATAAAACAAAAATAAA
178458 AGAATA
1 A-AATA
178464 TTAAATAAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
18 28 0.80
19 7 0.20
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.15
Consensus pattern (18 bp):
AAATAAAACAAAAATAAA
Found at i:179352 original size:21 final size:21
Alignment explanation
Indices: 179318--179386 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
179308 AAATAAAAAA
179318 AAATCAAATGAAAATAAATCAGAT
1 AAATCAAA--AAAATAAA-CAGAT
*
179342 AAATCAAAAAAATTAACAGAT
1 AAATCAAAAAAATAAACAGAT
*
179363 AAATTAAAATTAAAT-AACAGAT
1 AAATCAAAA--AAATAAACAGAT
179385 AA
1 AA
179387 TACATAATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 13 0.32
22 16 0.39
23 4 0.10
24 8 0.20
ACGTcount: A:0.65, C:0.07, G:0.06, T:0.22
Consensus pattern (21 bp):
AAATCAAAAAAATAAACAGAT
Found at i:179519 original size:6 final size:5
Alignment explanation
Indices: 179487--179567 Score: 58
Period size: 5 Copynumber: 15.0 Consensus size: 5
179477 CTAAGATAAA
*
179487 AAAAT AAAAG AAAA- AAATAT ATAAAT AATAAT AAAAAT AAAAT AGAAAT
1 AAAAT AAAAT AAAAT AAA-AT A-AAAT AA-AAT -AAAAT AAAAT A-AAAT
*
179536 AAAAT AAAAATGT AAAAT AATA- AAAAT AAAAT
1 AAAAT -AAAA--T AAAAT AAAAT AAAAT AAAAT
179568 GAAGAAAAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 20
0.73 0.03 0.23
Matches are distributed among these distances:
4 6 0.10
5 29 0.46
6 19 0.30
7 8 0.13
8 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:179529 original size:38 final size:36
Alignment explanation
Indices: 179487--179578 Score: 105
Period size: 38 Copynumber: 2.5 Consensus size: 36
179477 CTAAGATAAA
*
179487 AAAATAAAAGAAAAAAATATATAAATAATAATAAAAAT
1 AAAATAAAAGAAAAAAAAATAT-AA-AATAATAAAAAT
* *
179525 AAAATAGAAATAAAATAAAAATGTAAAATAATAAAAAT
1 AAAATA-AAAGAAAA-AAAAATATAAAATAATAAAAAT
*
179563 AAAAT-GAAGAAAAAAA
1 AAAATAAAAGAAAAAAA
179579 GAACATAGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
35 3 0.06
36 6 0.13
38 23 0.49
39 9 0.19
40 6 0.13
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.18
Consensus pattern (36 bp):
AAAATAAAAGAAAAAAAAATATAAAATAATAAAAAT
Found at i:179575 original size:15 final size:14
Alignment explanation
Indices: 179513--179576 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 14
179503 ATATATAAAT
*
179513 AATAATAAAAATAA
1 AATAAGAAAAATAA
179527 AAT-AG--AAATAA
1 AATAAGAAAAATAA
**
179538 AATAA-AAATGTAA
1 AATAAGAAAAATAA
*
179551 AATAATAAAAATAA
1 AATAAGAAAAATAA
179565 AATGAAGAAAAA
1 AAT-AAGAAAAA
179577 AAGAACATAG
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
11 9 0.23
12 1 0.03
13 10 0.26
14 12 0.31
15 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (14 bp):
AATAAGAAAAATAA
Found at i:179928 original size:41 final size:41
Alignment explanation
Indices: 179790--179972 Score: 222
Period size: 42 Copynumber: 4.4 Consensus size: 41
179780 ATGATTTTAA
* * * * * *
179790 GAAACATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTT
1 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
* *
179831 GGAAAAATAAATTGCTCCTCTAAATAGAGGCACCATGACTTTT
1 -GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGAC-TTT
179874 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
1 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
* * * *
179915 GAAAAGTAAATTGCTCTTCTAAACAAAGGCAACACGACTTT
1 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
*
179956 GAAAATGTAAATTGCTC
1 GAAAA-ATAAATTGCTC
179973 ATTGATGATT
Statistics
Matches: 125, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
41 45 0.36
42 77 0.62
43 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (41 bp):
GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT
Found at i:179954 original size:83 final size:83
Alignment explanation
Indices: 179790--179972 Score: 224
Period size: 83 Copynumber: 2.2 Consensus size: 83
179780 ATGATTTTAA
* * * *
179790 GAAACATAAATGGCTCCTCTAATCAGAGGCTCAACAACTTTGGAAAAATAAATTGCTCCTCTAAA
1 GAAAAATAAATTGCTCCTCTAAACAGAGGCACAACAACTTTGGAAAAATAAATTGCTCCTCTAAA
* * * *
179855 TAGAGGCACCATGACTTTT
66 CAAAGGCAACACGAC-TTT
* * * *
179874 GAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCTTCTAAA
1 GAAAAATAAATTGCTCCTCTAAACAGAGGCACAACAACTTTGGAAAAATAAATTGCTCCTCTAAA
179938 CAAAGGCAACACGACTTT
66 CAAAGGCAACACGACTTT
*
179956 GAAAATGTAAATTGCTC
1 GAAAA-ATAAATTGCTC
179973 ATTGATGATT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
82 8 0.09
83 42 0.49
84 35 0.41
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.25
Consensus pattern (83 bp):
GAAAAATAAATTGCTCCTCTAAACAGAGGCACAACAACTTTGGAAAAATAAATTGCTCCTCTAAA
CAAAGGCAACACGACTTT
Found at i:180991 original size:19 final size:19
Alignment explanation
Indices: 180969--181011 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
180959 TGAGTCCTCT
180969 TTTTTCATTCACTTTTTTC
1 TTTTTCATTCACTTTTTTC
** **
180988 TTTTTTTTTCTTTTTTTTC
1 TTTTTCATTCACTTTTTTC
181007 TTTTT
1 TTTTT
181012 TTTTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTCATTCACTTTTTTC
Found at i:180996 original size:10 final size:10
Alignment explanation
Indices: 180981--181032 Score: 79
Period size: 10 Copynumber: 5.3 Consensus size: 10
180971 TTTCATTCAC
180981 TTTTTTCTTT
1 TTTTTTCTTT
180991 TTTTTTC-TT
1 TTTTTTCTTT
181000 TTTTTTCTTT
1 TTTTTTCTTT
*
181010 TTTTTTTTTT
1 TTTTTTCTTT
*
181020 TTTTTTATTT
1 TTTTTTCTTT
181030 TTT
1 TTT
181033 CATTTTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
9 9 0.23
10 30 0.77
ACGTcount: A:0.02, C:0.06, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:181012 original size:19 final size:19
Alignment explanation
Indices: 180981--181042 Score: 92
Period size: 19 Copynumber: 3.4 Consensus size: 19
180971 TTTCATTCAC
180981 TTTTTTCTTTTTTTTTCTT
1 TTTTTTCTTTTTTTTTCTT
181000 TTTTTTCTTTTTTTTT-TT
1 TTTTTTCTTTTTTTTTCTT
* *
181018 TTTTTT-TTATTTTTTCAT
1 TTTTTTCTTTTTTTTTCTT
181036 TTTTTTC
1 TTTTTTC
181043 AAGCATAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.21
18 15 0.38
19 16 0.41
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTTTTCTTTTTTTTTCTT
Found at i:181041 original size:1 final size:1
Alignment explanation
Indices: 180981--181032 Score: 68
Period size: 1 Copynumber: 52.0 Consensus size: 1
180971 TTTCATTCAC
* * * *
180981 TTTTTTCTTTTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
181033 CATTTTTTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.02, C:0.06, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:181043 original size:9 final size:9
Alignment explanation
Indices: 180981--181042 Score: 81
Period size: 9 Copynumber: 6.8 Consensus size: 9
180971 TTTCATTCAC
180981 TTTTTTCTTT
1 TTTTTTC-TT
180991 TTTTTTCTT
1 TTTTTTCTT
181000 TTTTTTCTT
1 TTTTTTCTT
181009 TTTTTT-TT
1 TTTTTTCTT
*
181017 TTTTTTTTT
1 TTTTTTCTT
*
181026 ATTTTTTCAT
1 -TTTTTTCTT
181036 TTTTTTC
1 TTTTTTC
181043 AAGCATAGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
8 8 0.17
9 26 0.54
10 14 0.29
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:188036 original size:59 final size:57
Alignment explanation
Indices: 187906--188247 Score: 350
Period size: 59 Copynumber: 5.8 Consensus size: 57
187896 TCTTGTGCAG
* **
187906 GGAAAATTGATACTTTCAACTTTT-CTCCAAAAATATTCTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCCAAAAATATT-TTTTGAAAATTT-ATTTTAA
* *
187964 GAAAAATTGATACTTTCAACTTCTCCT-CAAAAATTTATTTTTTGAAAATTTATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCCAAAAA--TATTTTTTGAAAATTTATT-TTAA
* * *
188023 GGAAAATTGATACTTTCAACTTTT-CTCCAAAAATATTCTTTGGAAACTTTTATTTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCCAAAAATATT-TTTTGAAA-ATTTATTTT-AA
* ** *
188082 GGAAAATTGATCCTTTCAACTTTTCCTTAAAAAAACTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-TCCAAAAA-TATTTTTTGAAAATTTA-TTTTAA
* *
188142 GGAAAATTGATACTTTCAACTTTTCCTCGAAAAAAAAATTTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC----CAAAAA--TATTTTTTGAAAATTTA-TTTTAA
* *
188206 GGAAAATTGATTCTTTCAATTTTTCC-CCAAAAATATTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCTCCAAAAATATTTTTTG
188248 GATTTTTATT
Statistics
Matches: 243, Mismatches: 24, Indels: 35
0.80 0.08 0.12
Matches are distributed among these distances:
57 12 0.05
58 42 0.17
59 79 0.33
60 35 0.14
61 17 0.07
62 3 0.01
63 7 0.03
64 48 0.20
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCCAAAAATATTTTTTGAAAATTTATTTTAA
Found at i:188054 original size:117 final size:119
Alignment explanation
Indices: 187906--188175 Score: 420
Period size: 117 Copynumber: 2.3 Consensus size: 119
187896 TCTTGTGCAG
*
187906 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTTGAAAC-TTTAATTTCGAGAAAAA
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTGGAAACTTTTAATTTCGAGAAAAA
* *
187970 TTGATACTTTCAACTTCTCC-T-CAAAAATTTATTTTTTGAAAATTTATTCTTAA
66 TTGATACTTTCAACTTCTCCTTAAAAAAACTT-TTTTTTGAAAATTTATTCTTAA
* *
188023 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTGGAAACTTTTATTTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTGGAAACTTTTAATTTCGAGAAAAA
* * *
188088 TTGATCCTTTCAACTTTTCCTTAAAAAAACTTTTTTTTGAAAATTTATTTTTAA
66 TTGATACTTTCAACTTCTCCTTAAAAAAACTTTTTTTTGAAAATTTATTCTTAA
*
188142 GGAAAATTGATACTTTCAACTTTTCCTCGAAAAA
1 GGAAAATTGATACTTTCAACTTTT-CTCCAAAAA
188176 AAAATTTTTT
Statistics
Matches: 140, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
117 46 0.33
118 33 0.24
119 46 0.33
120 15 0.11
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATTCTTTGGAAACTTTTAATTTCGAGAAAAA
TTGATACTTTCAACTTCTCCTTAAAAAAACTTTTTTTTGAAAATTTATTCTTAA
Found at i:188286 original size:18 final size:18
Alignment explanation
Indices: 188263--188354 Score: 57
Period size: 18 Copynumber: 4.9 Consensus size: 18
188253 TTATTTAAAG
188263 AAAATAGAATAATAAAAC
1 AAAATAGAATAATAAAAC
* *
188281 AAAATAGAAGTGAAAATAAAT
1 AAAATAGAA-T-AATA-AAAC
*
188302 AAAA-ATAATAATAAAA-
1 AAAATAGAATAATAAAAC
188318 AAAATAATGAA-AAGTAAAAC
1 AAAAT-A-GAATAA-TAAAAC
*
188338 AAAAATA-AAAAATAAAA
1 -AAAATAGAATAATAAAA
188355 TAAAGATAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
16 4 0.07
17 3 0.05
18 22 0.37
19 11 0.19
20 7 0.12
21 12 0.20
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (18 bp):
AAAATAGAATAATAAAAC
Found at i:188309 original size:6 final size:6
Alignment explanation
Indices: 188298--188365 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
188288 AAGTGAAAAT
* * *
188298 AAATAA AAATAA TAATAA AAA-AA ATAATGAA AAGT-A AAACAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA A-AAT-AA AAATAA AAATAA AAATAA
*
188346 AAA-ATA AAATAA AGATAA AA
1 AAATA-A AAATAA AAATAA AA
188366 GAATATTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
5 7 0.15
6 35 0.73
7 3 0.06
8 3 0.06
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:188309 original size:35 final size:35
Alignment explanation
Indices: 188270--188356 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 35
188260 AAGAAAATAG
*
188270 AATAATAAAACAAAATAGAAGTGAAAA-TAAATAAAAA
1 AATAATAAAA-AAAATAGAA-TGAAAAGTAAA-ACAAA
188307 TAATAATAAAAAAAAT--AATGAAAAGTAAAACAAA
1 -AATAATAAAAAAAATAGAATGAAAAGTAAAACAAA
188341 AATAA-AAAATAAAATA
1 AATAATAAAA-AAAATA
188357 AAGATAAAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
32 4 0.09
33 10 0.22
34 10 0.22
35 6 0.13
37 5 0.11
38 10 0.22
ACGTcount: A:0.75, C:0.02, G:0.06, T:0.17
Consensus pattern (35 bp):
AATAATAAAAAAAATAGAATGAAAAGTAAAACAAA
Found at i:188322 original size:15 final size:16
Alignment explanation
Indices: 188295--188429 Score: 67
Period size: 16 Copynumber: 8.8 Consensus size: 16
188285 TAGAAGTGAA
188295 AATAAATAAAAATAAT
1 AATAAATAAAAATAAT
188311 AATAAA-AAAAATAAT
1 AATAAATAAAAATAAT
*
188326 GAA-AAGTAAAACA-AA-
1 -AATAAATAAAA-ATAAT
188341 AAT--A-AAAAATAA-
1 AATAAATAAAAATAAT
* *
188353 AATAAAGATAAAAGAAT
1 AATAAATA-AAAATAAT
* **
188370 ATTAAATAAACCTAATGT
1 AATAAATAAAAATAA--T
*
188388 AATAAATAAAATTAAT
1 AATAAATAAAAATAAT
*
188404 AAATTAATAAAAA-AAT
1 -AATAAATAAAAATAAT
188420 AA-AAA-AAAAA
1 AATAAATAAAAA
188430 CTTGGAGCGG
Statistics
Matches: 92, Mismatches: 14, Indels: 29
0.68 0.10 0.21
Matches are distributed among these distances:
11 1 0.01
12 9 0.10
13 5 0.05
14 5 0.05
15 14 0.15
16 28 0.30
17 17 0.18
18 13 0.14
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (16 bp):
AATAAATAAAAATAAT
Found at i:188363 original size:18 final size:18
Alignment explanation
Indices: 188293--188370 Score: 70
Period size: 18 Copynumber: 4.3 Consensus size: 18
188283 AATAGAAGTG
188293 AAAAT-AAATAAAAAT-A
1 AAAATAAAATAAAAATAA
* * *
188309 ATAATAAAAAAAATAATGA
1 AAAATAAAATAAA-AATAA
* *
188328 AAAGTAAAACAAAAATAA
1 AAAATAAAATAAAAATAA
*
188346 AAAATAAAATAAAGATAA
1 AAAATAAAATAAAAATAA
188364 AAGAATA
1 AA-AATA
188371 TTAAATAAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
16 4 0.08
17 6 0.12
18 24 0.49
19 15 0.31
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (18 bp):
AAAATAAAATAAAAATAA
Found at i:189279 original size:24 final size:23
Alignment explanation
Indices: 189252--189308 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
189242 TAAATAAAAA
*
189252 AAATAAAATGAAAATAAATCAGAT
1 AAATAAAATAAAAATAAAT-AGAT
*
189276 AAATCAAAA-AAAAATTAATAGAT
1 AAAT-AAAATAAAAATAAATAGAT
189299 AAATTAAAAT
1 AAA-TAAAAT
189309 TAAATAACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 11 0.39
24 13 0.46
25 4 0.14
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (23 bp):
AAATAAAATAAAAATAAATAGAT
Found at i:189298 original size:23 final size:24
Alignment explanation
Indices: 189262--189307 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
189252 AAATAAAATG
189262 AAAATAAATCAGATAAATCAAAAA
1 AAAATAAATCAGATAAATCAAAAA
* *
189286 AAAATTAAT-AGATAAATTAAAA
1 AAAATAAATCAGATAAATCAAAA
189308 TTAAATAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (24 bp):
AAAATAAATCAGATAAATCAAAAA
Found at i:189456 original size:12 final size:10
Alignment explanation
Indices: 189441--189515 Score: 56
Period size: 9 Copynumber: 7.9 Consensus size: 10
189431 AATAAATGAA
189441 AAATATATATAT
1 AAATA-ATA-AT
189453 AAATAATAAT
1 AAATAATAAT
189463 AAA-AATAA-
1 AAATAATAAT
189471 AAATAA-AAT
1 AAATAATAAT
*
189480 AAA-AAT-GT
1 AAATAATAAT
189488 AAAATAATAA-
1 -AAATAATAAT
*
189498 AAATAAAAAT
1 AAATAATAAT
189508 AAA-AATAA
1 AAATAATAA
189516 AATGAAGAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
8 8 0.15
9 25 0.48
10 11 0.21
11 3 0.06
12 5 0.10
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (10 bp):
AAATAATAAT
Found at i:189463 original size:6 final size:6
Alignment explanation
Indices: 189424--189517 Score: 84
Period size: 6 Copynumber: 15.0 Consensus size: 6
189414 AGTACCTAAG
* * * *
189424 ATAAAA A-AATAA ATGAAAA ATATAT ATATAA ATAATA ATAAAA ATAAAA
1 ATAAAA ATAA-AA AT-AAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
189473 AT-AAA ATAAAA ATGTAAAATA ATAAAA ATAAAA ATAAAA ATAAAA
1 ATAAAA ATAAAA A--T-AAA-A ATAAAA ATAAAA ATAAAA ATAAAA
189518 TGAAGAAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
5 7 0.09
6 51 0.69
7 7 0.09
8 4 0.05
9 3 0.04
10 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
ATAAAA
Done.