Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168182.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_42, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 251127
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Warning! 2000 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:189498 original size:21 final size:21
Alignment explanation
Indices: 189454--189517 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 21
189444 TATATATATA
*
189454 AATAATAATAAAAATAAAAAT
1 AATAAAAATAAAAATAAAAAT
*
189475 AAAATAAAAATGTAAAATAATAAA-
1 --AATAAAAAT-AAAAATAA-AAAT
189499 AATAAAAATAAAAATAAAA
1 AATAAAAATAAAAATAAAA
189518 TGAAGAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
20 2 0.06
21 7 0.19
22 9 0.25
23 8 0.22
24 7 0.19
25 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AATAAAAATAAAAATAAAAAT
Found at i:189503 original size:22 final size:21
Alignment explanation
Indices: 189424--189509 Score: 56
Period size: 22 Copynumber: 4.0 Consensus size: 21
189414 AGTACCTAAG
189424 ATAAAAA-AATAAATGAAAAAT-
1 ATAAAAATAA-AAAT-AAAAATA
* *
189445 ATATATATAAATAATAATAAA-A
1 ATAAAAATAAA-AATAA-AAATA
189467 ATAAAAAT-AAAATAAAAATGTA
1 ATAAAAATAAAAATAAAAA--TA
*
189489 A-AATAATAAAAATAAAAATA
1 ATAAAAATAAAAATAAAAATA
189509 A
1 A
189510 AAATAAAATG
Statistics
Matches: 52, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
19 3 0.06
20 8 0.15
21 15 0.29
22 26 0.50
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (21 bp):
ATAAAAATAAAAATAAAAATA
Found at i:189526 original size:27 final size:26
Alignment explanation
Indices: 189469--189527 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
189459 TAATAAAAAT
*
189469 AAAAATAAAATAAAAATGTAAAATAAT
1 AAAAATAAAATAAAAA-GTAAAATAAG
189496 AAAAATAAAAATAAAAA-TAAAATGAAG
1 AAAAAT-AAAATAAAAAGTAAAAT-AAG
189523 AAAAA
1 AAAAA
189528 AAGAACATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 6 0.21
27 13 0.45
28 10 0.34
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (26 bp):
AAAAATAAAATAAAAAGTAAAATAAG
Found at i:195752 original size:21 final size:22
Alignment explanation
Indices: 195715--195757 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
195705 TCCTTTTTCC
195715 CTTTTCTTTCTATTTTT-TTGG
1 CTTTTCTTTCTATTTTTCTTGG
*
195736 CTTTTC-TTCTTTCTTTTCTTGG
1 CTTTTCTTTCTAT-TTTTCTTGG
195758 TTTGTAACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 10 0.53
22 4 0.21
ACGTcount: A:0.02, C:0.19, G:0.09, T:0.70
Consensus pattern (22 bp):
CTTTTCTTTCTATTTTTCTTGG
Found at i:200104 original size:13 final size:13
Alignment explanation
Indices: 200086--200110 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
200076 ACAACAATCA
200086 ATAAGAAAAAAAT
1 ATAAGAAAAAAAT
200099 ATAAGAAAAAAA
1 ATAAGAAAAAAA
200111 AGCACATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
ATAAGAAAAAAAT
Found at i:200455 original size:21 final size:21
Alignment explanation
Indices: 200422--200475 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
200412 CAATTCTCCC
*
200422 TTTTTTTTGTTTTC-TCTTTA
1 TTTTTTTGGTTTTCTTCTTTA
*
200442 TTTTTTTGGCTTTTCTTCTTTC
1 TTTTTTTGG-TTTTCTTCTTTA
*
200464 TTTTCTTGGTTT
1 TTTTTTTGGTTT
200476 GTGACACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.28
21 8 0.28
22 13 0.45
ACGTcount: A:0.02, C:0.13, G:0.09, T:0.76
Consensus pattern (21 bp):
TTTTTTTGGTTTTCTTCTTTA
Found at i:206341 original size:27 final size:27
Alignment explanation
Indices: 206298--206350 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
206288 CAAAGATTAT
**
206298 TTTTAATTTTTTGTTTTGTATAATATA
1 TTTTAATTTTTTGTTTTAAATAATATA
*
206325 TTTTCATTTTTAT-TTTTAAATAATAT
1 TTTTAATTTTT-TGTTTTAAATAATAT
206351 CTAGTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (27 bp):
TTTTAATTTTTTGTTTTAAATAATATA
Found at i:206980 original size:2 final size:2
Alignment explanation
Indices: 206973--207007 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
206963 CGTTTCAAAT
206973 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
207008 TAGAGTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:207211 original size:2 final size:2
Alignment explanation
Indices: 207204--207235 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
207194 ATTTTGAGTT
207204 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
207236 GTTTTTAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:207593 original size:21 final size:21
Alignment explanation
Indices: 207569--207627 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
207559 TTTTTAACCA
*
207569 AAATAAAATAATTTTCAATAT
1 AAATAAAATAATTTTAAATAT
*
207590 AAATAATAA-AAATTTAAATAT
1 AAATAA-AATAATTTTAAATAT
*
207611 ATATTAAAATAATTTTA
1 A-AATAAAATAATTTTA
207628 CAAAGTGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AAATAAAATAATTTTAAATAT
Found at i:208257 original size:3 final size:3
Alignment explanation
Indices: 208251--208282 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
208241 ATATTATTAT
208251 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
208283 ATAATAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:208287 original size:3 final size:3
Alignment explanation
Indices: 208281--208308 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
208271 CTACTACTAC
208281 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
208309 CTATTAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:209155 original size:24 final size:23
Alignment explanation
Indices: 209103--209155 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
209093 GTATTTAATA
**
209103 AAAAATTTTAAAAAATAAAAAAG
1 AAAAATTAAAAAAAATAAAAAAG
*
209126 ACAAAATTAAAAAAAATTAAAAATG
1 A-AAAATTAAAAAAAA-TAAAAAAG
209151 AAAAA
1 AAAAA
209156 AAACTCATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 16 0.64
25 8 0.32
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (23 bp):
AAAAATTAAAAAAAATAAAAAAG
Found at i:211112 original size:28 final size:29
Alignment explanation
Indices: 211044--211113 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
211034 TCATTTGCAT
*
211044 TAAATTAAAAAATTTTTTAATATAATATA
1 TAAATTAAAAAATTTATTAATATAATATA
*
211073 TAAATT-ATAAATTTATTAAT-TAATATA
1 TAAATTAAAAAATTTATTAATATAATATA
*
211100 -ATATTCAAAAAATT
1 TAAATT-AAAAAATT
211114 ATTTATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 4 0.11
27 7 0.20
28 18 0.51
29 6 0.17
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (29 bp):
TAAATTAAAAAATTTATTAATATAATATA
Found at i:211115 original size:27 final size:27
Alignment explanation
Indices: 211044--211125 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
211034 TCATTTGCAT
*
211044 TAAATTAAAAAATTTTTTAATATAATATA
1 TAAATTAAAAAA-TTATTAAT-TAATATA
* *
211073 TAAATTATAAATTTATTAATTAATATA
1 TAAATTAAAAAATTATTAATTAATATA
* * *
211100 -ATATTCAAAAAATTATTTATTTATAT
1 TAAATT-AAAAAATTATTAATTAATAT
211126 TAACCAAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.09
27 23 0.52
28 7 0.16
29 10 0.23
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (27 bp):
TAAATTAAAAAATTATTAATTAATATA
Found at i:214339 original size:92 final size:92
Alignment explanation
Indices: 214182--214364 Score: 339
Period size: 92 Copynumber: 2.0 Consensus size: 92
214172 ACGAATGGTT
*
214182 GCATCAGGCAAGAGGGGTAAGCAGTGTAAATCTATTCATGGGAGTTCAAGTACTTGCAAACTTGG
1 GCATCAGGCAAGAGGGGTAAGCAGTGTAAATCTATTCATGGGAGTTCAAATACTTGCAAACTTGG
*
214247 AAGTATAGAGAACTTGCATGGTAGAAC
66 AAGTATAGAGAACTTGCATAGTAGAAC
214274 GCATCAGGCAAGAGGGGTAAGCAGTGTAAATCTATTCATGGGAGTTCAAATACTTGCAAACTTGG
1 GCATCAGGCAAGAGGGGTAAGCAGTGTAAATCTATTCATGGGAGTTCAAATACTTGCAAACTTGG
*
214339 AAGTATAGGGAACTTGCATAGTAGAA
66 AAGTATAGAGAACTTGCATAGTAGAA
214365 GGGGAACAGA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 88 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (92 bp):
GCATCAGGCAAGAGGGGTAAGCAGTGTAAATCTATTCATGGGAGTTCAAATACTTGCAAACTTGG
AAGTATAGAGAACTTGCATAGTAGAAC
Found at i:217527 original size:19 final size:20
Alignment explanation
Indices: 217505--217549 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 20
217495 TTGCACCACC
217505 AATTAATGTTATTTTCA-CT
1 AATTAATGTTATTTTCATCT
217524 AATTAA---TATTTTCATCT
1 AATTAATGTTATTTTCATCT
217541 -ATTAATGTT
1 AATTAATGTT
217550 TCACCACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 8
0.73 0.00 0.27
Matches are distributed among these distances:
16 13 0.59
17 2 0.09
19 7 0.32
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.53
Consensus pattern (20 bp):
AATTAATGTTATTTTCATCT
Found at i:221707 original size:5 final size:5
Alignment explanation
Indices: 221699--221724 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
221689 AGCTAATTCC
221699 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
221725 AAGATTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:221752 original size:81 final size:81
Alignment explanation
Indices: 221644--221794 Score: 248
Period size: 81 Copynumber: 1.9 Consensus size: 81
221634 ATAGGAAATT
221644 AAGACTGTCTGGTACTCTTTTGAAAAGGAAAATTCCTCAAAACTAAGCTAATTCCATAATATAAT
1 AAGACTGTCTGGTACTCTTTTGAAAAGGAAAATTCCTCAAAACTAAGCTAATTCCATAATATAAT
221709 ATAATATAATATAATA
66 ATAATATAATATAATA
* * * * * *
221725 AAGATTGTTTGGTACTCTTTTGGAAAGGAAAATTCCTCAAAACTAATCTAGTTTCATAATATAAT
1 AAGACTGTCTGGTACTCTTTTGAAAAGGAAAATTCCTCAAAACTAAGCTAATTCCATAATATAAT
221790 ATAAT
66 ATAAT
221795 GAGACTAAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (81 bp):
AAGACTGTCTGGTACTCTTTTGAAAAGGAAAATTCCTCAAAACTAAGCTAATTCCATAATATAAT
ATAATATAATATAATA
Found at i:230378 original size:52 final size:52
Alignment explanation
Indices: 230287--230443 Score: 174
Period size: 52 Copynumber: 3.0 Consensus size: 52
230277 TATAACCATA
* *
230287 CAAACTTGCCC-ATTAAAAATCCATCTCCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTT-CCCTATTAAGAATCCATCTCCTCTTAAAATTCTTCTCTTGTAAGT
* * * *
230339 CAGACTTCCCTATTAAGAATCCCTTTCCTTTTAAAATTCTTCTCTTGTAAGT
1 CAAACTTCCCTATTAAGAATCCATCTCCTCTTAAAATTCTTCTCTTGTAAGT
* * ** * *
230391 CAAACTTACCTATTAAGAAT-CATCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTCCCTATTAAGAATCCATC-TCCTCTTAAAATTCTTCTCTTGTAAGT
230443 C
1 C
230444 TTCTTGTCCA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
51 5 0.06
52 82 0.94
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (52 bp):
CAAACTTCCCTATTAAGAATCCATCTCCTCTTAAAATTCTTCTCTTGTAAGT
Found at i:231399 original size:52 final size:52
Alignment explanation
Indices: 231310--231434 Score: 178
Period size: 52 Copynumber: 2.4 Consensus size: 52
231300 TATAACAATA
* *
231310 CAAACTTGCCCATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGTAAGT
* * * * *
231362 CAGACTTACCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGTAAGT
*
231414 TAAACTTACCTATTAAGAATC
1 CAAACTTACCTATTAAGAATC
231435 TTCTTTCTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCATCTCCTCTTAGAATTCTTCTCCTGTAAGT
Found at i:231452 original size:52 final size:52
Alignment explanation
Indices: 231310--231466 Score: 167
Period size: 52 Copynumber: 3.0 Consensus size: 52
231300 TATAACAATA
* * * * *
231310 CAAACTTGCCCATTAAGAATCCATCTCCTCTT-AGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCT-TTGAGAATTCTTCTCTTGTAAGT
* *
231362 CAGACTTACCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCTTTGAGAATTCTTCTCTTGTAAGT
* * * *
231414 TAAACTTACCTATTAAGAATCTTCTTT-CTCTTGA-AATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATC-CCTTTCCT-TTGAGAATTCTTCTCTTGTAAGT
231466 C
1 C
231467 TTCTTGTCCA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 2 0.02
52 80 0.90
53 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCCTTTCCTTTGAGAATTCTTCTCTTGTAAGT
Found at i:236626 original size:5 final size:5
Alignment explanation
Indices: 236619--236654 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
236609 ATCTAATTCC
*
236619 ATAAC ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
236655 AAGATTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:246038 original size:17 final size:16
Alignment explanation
Indices: 246016--246134 Score: 107
Period size: 16 Copynumber: 7.2 Consensus size: 16
246006 AAGTTTGGGA
*
246016 TTTTGGATTTTGGGGGG
1 TTTTGGATTTT-AGGGG
246033 TTTTGGATTTTAGGGG
1 TTTTGGATTTTAGGGG
* *
246049 TTTCGAATTTTACGGGG
1 TTTTGGATTTTA-GGGG
* *
246066 -TTTGGATTTAAGGGA
1 TTTTGGATTTTAGGGG
246081 TTTTGGATTTTTAGCGGG
1 TTTTGGA-TTTTAG-GGG
* *
246099 -TTTGGATTTAAGGGA
1 TTTTGGATTTTAGGGG
*
246114 TTTTGAATTTTTAGGGG
1 TTTTGGA-TTTTAGGGG
246131 TTTT
1 TTTT
246135 AAAAACTTAG
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
15 5 0.06
16 38 0.46
17 37 0.45
18 2 0.02
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.48
Consensus pattern (16 bp):
TTTTGGATTTTAGGGG
Found at i:246066 original size:33 final size:31
Alignment explanation
Indices: 246029--246133 Score: 120
Period size: 33 Copynumber: 3.2 Consensus size: 31
246019 TGGATTTTGG
* *
246029 GGGGTTTTGGATTTTAGGGGTTTCGAATTTTA
1 GGGG-TTTGGATTTAAGGGATTTCGAATTTTA
* *
246061 CGGGGTTTGGATTTAAGGGATTTTGGATTTTTA
1 -GGGGTTTGGATTTAAGGGA-TTTCGAATTTTA
*
246094 GCGGGTTTGGATTTAAGGGATTTTGAATTTTTA
1 G-GGGTTTGGATTTAAGGGATTTCGAA-TTTTA
246127 GGGGTTT
1 GGGGTTT
246134 TAAAAACTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
32 25 0.40
33 38 0.60
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.46
Consensus pattern (31 bp):
GGGGTTTGGATTTAAGGGATTTCGAATTTTA
Found at i:246085 original size:65 final size:65
Alignment explanation
Indices: 246012--246133 Score: 167
Period size: 65 Copynumber: 1.9 Consensus size: 65
246002 TTAAAAGTTT
* * * *
246012 GGGATTTTGGA-TTTTGGGGGGTTTTGGATTTTAGGGGTTTCGAA-TTTTACGGGGTTTGGATTT
1 GGGATTTTGGATTTTTAGCGGG-TTTGGATTTAAGGGATTTCGAATTTTTA-GGGGTTTGGATTT
246075 AA
64 AA
*
246077 GGGATTTTGGATTTTTAGCGGGTTTGGATTTAAGGGATTTTGAATTTTTAGGGGTTT
1 GGGATTTTGGATTTTTAGCGGGTTTGGATTTAAGGGATTTCGAATTTTTAGGGGTTT
246134 TAAAAACTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
65 37 0.74
66 13 0.26
ACGTcount: A:0.16, C:0.02, G:0.35, T:0.46
Consensus pattern (65 bp):
GGGATTTTGGATTTTTAGCGGGTTTGGATTTAAGGGATTTCGAATTTTTAGGGGTTTGGATTTAA
Found at i:247627 original size:15 final size:15
Alignment explanation
Indices: 247577--247635 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
247567 TTTTTTTTTT
*
247577 ATATTTTTATATAATTA
1 ATATTATTAT-TAA-TA
*
247594 ATAATTATT-TTTA-A
1 AT-ATTATTATTAATA
247608 ATATTATTATTAATA
1 ATATTATTATTAATA
*
247623 ATATTATCATTAA
1 ATATTATTATTAA
247636 AATTAAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 6 0.17
14 6 0.17
15 13 0.37
16 2 0.06
17 3 0.09
18 5 0.14
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTATTATTAATA
Found at i:247872 original size:22 final size:23
Alignment explanation
Indices: 247844--247888 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
247834 AATCGAATTT
247844 ATGCCCGGAAGTCTTACA-AATC
1 ATGCCCGGAAGTCTTACAGAATC
*
247866 ATGCCCGGAGGTCTTACAGAATC
1 ATGCCCGGAAGTCTTACAGAATC
247889 GATTGGGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (23 bp):
ATGCCCGGAAGTCTTACAGAATC
Found at i:247970 original size:109 final size:109
Alignment explanation
Indices: 247778--248211 Score: 591
Period size: 109 Copynumber: 4.0 Consensus size: 109
247768 AAACATAAAA
* * * * * *
247778 CGATTGGGATGACATCGCAAGTCAAAAAATAATGAATCGATTGAGATAATATCGCGAATCGAATT
1 CGATTGGGAT-AAACCGCAAGTCAAAAAATAAAGAATCGATCGAGATAACACCGCGAATCGAATT
247843 TATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
65 TATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
* * *
247888 CGATTGGGATAAACCGCAAGTTAAAAAATAAAGAATCAATCGAGATAACACCGCGAATCAAATTT
1 CGATTGGGATAAACCGCAAGTCAAAAAATAAAGAATCGATCGAGATAACACCGCGAATCGAATTT
*
247953 ATGTCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
66 ATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
* * * * *
247997 CGATTAGGATAAACTGCAAGTTAAAAAATAAA-AAACTGATCGGGATAACACCGCGAATCGAATT
1 CGATTGGGATAAACCGCAAGTCAAAAAATAAAGAATC-GATCGAGATAACACCGCGAATCGAATT
* * * * *
248061 TATGCCCGGAGGTCTTAGACATCATGTCCGGAGGTCTTACAAAAT
65 TATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
* * * *
248106 CGATTGGGATAACACCACAAGTCAAAAGATAAAGAATCGATTGAGATAACACCGTGAATCGAATT
1 CGATTGGGATAA-ACCGCAAGTCAAAAAATAAAGAATCGATCGAGATAACACCGCGAATCGAATT
* * *
248171 TATGCCCGGAGGTCTTAGAAATCATGCCTGGAGGTCTTACA
65 TATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACA
248212 AAATTGTTCG
Statistics
Matches: 287, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
108 3 0.01
109 193 0.67
110 88 0.31
111 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (109 bp):
CGATTGGGATAAACCGCAAGTCAAAAAATAAAGAATCGATCGAGATAACACCGCGAATCGAATTT
ATGCCCGGAAGTCTTACAAATCATGCCCGGAGGTCTTACAGAAT
Found at i:248203 original size:22 final size:22
Alignment explanation
Indices: 248172--248252 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 22
248162 AATCGAATTT
*
248172 ATGCCCGGAGGTCTTAGAAATC
1 ATGCCTGGAGGTCTTAGAAATC
*
248194 ATGCCTGGAGGTCTTACAAA--
1 ATGCCTGGAGGTCTTAGAAATC
*
248214 ATTG-TTCGGAGGTCTTAGAAATC
1 A-TGCCT-GGAGGTCTTAGAAATC
*
248237 ATACCTGGAGGTCTTA
1 ATGCCTGGAGGTCTTA
248253 CAGAATTGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 2 0.04
21 15 0.31
22 29 0.60
23 2 0.04
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (22 bp):
ATGCCTGGAGGTCTTAGAAATC
Found at i:248238 original size:43 final size:43
Alignment explanation
Indices: 248177--248260 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
248167 AATTTATGCC
*
248177 CGGAGGTCTTAGAAATCATGCCTGGAGGTCTTACAAAATTGTT
1 CGGAGGTCTTAGAAATCATACCTGGAGGTCTTACAAAATTGTT
*
248220 CGGAGGTCTTAGAAATCATACCTGGAGGTCTTACAGAATTG
1 CGGAGGTCTTAGAAATCATACCTGGAGGTCTTACAAAATTG
248261 ACTGGGATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
CGGAGGTCTTAGAAATCATACCTGGAGGTCTTACAAAATTGTT
Found at i:248394 original size:87 final size:87
Alignment explanation
Indices: 248232--248428 Score: 288
Period size: 87 Copynumber: 2.3 Consensus size: 87
248222 GAGGTCTTAG
* * *
248232 AAATCATACCTGGAGGTCTTACAGAATTGACTGGGATAACACCGCAAGTCAGAAATAAAGAATCG
1 AAATCATGCCCGGAGGTCTTACAGAAATGACTGGGATAACACCGCAAGTCAGAAATAAAGAATCG
**
248297 ATTGGGACAACATCGCGAATCA
66 ATTGAAACAACATCGCGAATCA
* * *
248319 AAATTATGCCCGGAGGTCTTACAGAAATGACTGGGATAACATCGCGAGTCA-AAGATAAAGAATC
1 AAATCATGCCCGGAGGTCTTACAGAAATGACTGGGATAACACCGCAAGTCAGAA-ATAAAGAATC
248383 GATTGAAACAACATCGCGAATCA
65 GATTGAAACAACATCGCGAATCA
* *
248406 AAATCATGTCCAGAGGTCTTACA
1 AAATCATGCCCGGAGGTCTTACA
248429 AATCATGTCC
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 2 0.02
87 96 0.98
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.20
Consensus pattern (87 bp):
AAATCATGCCCGGAGGTCTTACAGAAATGACTGGGATAACACCGCAAGTCAGAAATAAAGAATCG
ATTGAAACAACATCGCGAATCA
Found at i:248433 original size:22 final size:22
Alignment explanation
Indices: 248406--248603 Score: 138
Period size: 22 Copynumber: 9.0 Consensus size: 22
248396 TCGCGAATCA
248406 AAATCATGTCCAGAGGTCTTAC
1 AAATCATGTCCAGAGGTCTTAC
*
248428 AAATCATGTCCGGAGGTCTTAC
1 AAATCATGTCCAGAGGTCTTAC
* *
248450 AGAAT--TATCCAGAGGTCTTAG
1 A-AATCATGTCCAGAGGTCTTAC
*
248471 AAATCATGTCC-GAAGGTCTTAA
1 AAATCATGTCCAG-AGGTCTTAC
*
248493 AAATCATGCTCGA-AGGTCTTAC
1 AAATCATG-TCCAGAGGTCTTAC
* * *
248515 AGAAT--TGCCCGGAGGTCTTAG
1 A-AATCATGTCCAGAGGTCTTAC
* * * * *
248536 AAATGATGCCCGGAGGTTTTAG
1 AAATCATGTCCAGAGGTCTTAC
* * *
248558 ACATCATGCCCAGAGGTCTTAT
1 AAATCATGTCCAGAGGTCTTAC
* * *
248580 AGAATCATGCCCGGAGATCTTAC
1 A-AATCATGTCCAGAGGTCTTAC
248603 A
1 A
248604 GAATTGACTA
Statistics
Matches: 143, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
20 7 0.05
21 26 0.18
22 84 0.59
23 26 0.18
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (22 bp):
AAATCATGTCCAGAGGTCTTAC
Found at i:248510 original size:65 final size:65
Alignment explanation
Indices: 248406--248584 Score: 193
Period size: 65 Copynumber: 2.8 Consensus size: 65
248396 TCGCGAATCA
* * *
248406 AAATCATGTCC-AGAGGTCTTACAAATCATG-TCCGGAGGTCTTACAGAATTATCCAGAGGTCTT
1 AAATCATGTCCGA-AGGTCTTAAAAATCATGCT-CGAAGGTCTTACAGAATTACCCAGAGGTCTT
248469 AG
64 AG
* *
248471 AAATCATGTCCGAAGGTCTTAAAAATCATGCTCGAAGGTCTTACAGAATTGCCCGGAGGTCTTAG
1 AAATCATGTCCGAAGGTCTTAAAAATCATGCTCGAAGGTCTTACAGAATTACCCAGAGGTCTTAG
* * * * * * * *
248536 AAATGATGCCCGGAGGTTTTAGACATCATGC-CCAGAGGTCTTATAGAAT
1 AAATCATGTCCGAAGGTCTTAAAAATCATGCTCGA-AGGTCTTACAGAAT
248585 CATGCCCGGA
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
64 2 0.02
65 94 0.96
66 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (65 bp):
AAATCATGTCCGAAGGTCTTAAAAATCATGCTCGAAGGTCTTACAGAATTACCCAGAGGTCTTAG
Found at i:248708 original size:23 final size:23
Alignment explanation
Indices: 248678--248780 Score: 86
Period size: 23 Copynumber: 4.6 Consensus size: 23
248668 GAATTTATGT
248678 CCGGAGGTCTTAGAAAATCATAC
1 CCGGAGGTCTTAGAAAATCATAC
* *
248701 CCGGAGGTCTTACAAAATCATGC
1 CCGGAGGTCTTAGAAAATCATAC
** * * *
248724 TTGAAGGTCTTATAGAAT--TAC
1 CCGGAGGTCTTAGAAAATCATAC
* * *
248745 CCGAAAGTCTTAG-AAATCATGC
1 CCGGAGGTCTTAGAAAATCATAC
*
248767 CCGGAGGTTTTAGA
1 CCGGAGGTCTTAGA
248781 CATCATGTTC
Statistics
Matches: 60, Mismatches: 17, Indels: 6
0.72 0.20 0.07
Matches are distributed among these distances:
20 3 0.05
21 11 0.18
22 12 0.20
23 34 0.57
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (23 bp):
CCGGAGGTCTTAGAAAATCATAC
Found at i:248806 original size:65 final size:67
Alignment explanation
Indices: 248684--248807 Score: 164
Period size: 65 Copynumber: 1.9 Consensus size: 67
248674 ATGTCCGGAG
* *
248684 GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCTTGAAGGTCTTATAGAATTACCCGA
1 GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCTTCAAGGTCTTACAGAATTACCCGA
248749 AA
66 AA
* * * *
248751 GTCTTAG-AAATCATGCCCGGAGGTTTTA-GACATCATG-TTCAGAGGTCTTACAGAATT
1 GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCTTCA-AGGTCTTACAGAATT
248808 GACTAAGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
64 3 0.06
65 21 0.42
66 19 0.38
67 7 0.14
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (67 bp):
GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCTTCAAGGTCTTACAGAATTACCCGA
AA
Found at i:248820 original size:199 final size:200
Alignment explanation
Indices: 248554--248977 Score: 611
Period size: 199 Copynumber: 2.1 Consensus size: 200
248544 CCCGGAGGTT
* * * *
248554 TTAGACATCATGCCCAGAGGTCTTATAGAATCATGCCCGGAGATCTTACAGAATTGACTAGGATA
1 TTAGAAATCATGCCCGGAGGTCTTATAGAATCATGCCCAGAGATCTTACAGAATTGACTAAGATA
* * *
248619 ACACCATAAGTCAAAAGATAAAGAATTGATCAGGATAACACCGCGAATCGAATTTATGTCCGGAG
66 ACACCATAAGTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCGAATTTATGCCCGGAG
** * *
248684 GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCTTGAAGGTCTTATAGAATTACCC-G
131 GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCCCGAAAGTCTTACAGAATTACCCAG
248748 AAAGTC
196 -AAGTC
** *
248754 TTAGAAATCATGCCCGGAGGT-TT-TAGACATCATGTTCAGAGGTCTTACAGAATTGACTAAGAT
1 TTAGAAATCATGCCCGGAGGTCTTATAGA-ATCATGCCCAGAGATCTTACAGAATTGACTAAGAT
* *
248817 AACACCATAAGTCAAAAGATAAAGAATCGATTAGGATAACACCGCAAATTGAATTTATGCCCGGA
65 AACACCATAAGTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCGAATTTATGCCCGGA
** * *
248882 GGTCTTAGAAAATCATGTCCGGAGGTCTTACAGAATCATGCCCGAAAGTCTTACAGAATTATCCA
130 GGTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCCCGAAAGTCTTACAGAATTACCCA
*
248947 GAGGTC
195 GAAGTC
*
248953 TTAAAAATCATGCCCGGAGGTCTTA
1 TTAGAAATCATGCCCGGAGGTCTTA
248978 CAAAATTGAC
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
198 4 0.02
199 172 0.87
200 22 0.11
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (200 bp):
TTAGAAATCATGCCCGGAGGTCTTATAGAATCATGCCCAGAGATCTTACAGAATTGACTAAGATA
ACACCATAAGTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCGAATTTATGCCCGGAG
GTCTTAGAAAATCATACCCGGAGGTCTTACAAAATCATGCCCGAAAGTCTTACAGAATTACCCAG
AAGTC
Found at i:248897 original size:176 final size:175
Alignment explanation
Indices: 248700--249068 Score: 429
Period size: 176 Copynumber: 2.1 Consensus size: 175
248690 GAAAATCATA
* * * *
248700 CCCGGAGGTCTTACAAAATCATG-CTTGAAGGTCTTATAGAAT-TACCCGAAAGTCTTAGA-AAT
1 CCCGGAGGTCTTAGAAAATCATGTC-CGAAGGTCTTACAGAATATACCCGAAAGTCTTACAGAAT
* * * * ** *
248762 CATGCCCGGAGGTTTTAGACATCATGTTCAGAGGTCTTACAGAATTGACTAAGATAACACCATAA
65 CAT--CCAGAGGTCTTAAAAATCATGCCCAGAGGTCTTACAAAATTGACTAAGATAACACCATAA
* * * *
248827 GTCAAAAGATAAAGAATCGATTAGGATAACACCGCAAATTGAATTTATG
128 GTCAAAA-ATAAAGAATCGATCAGGACAACACCGCAAATCGAAATTATG
* *
248876 CCCGGAGGTCTTAGAAAATCATGTCCGGAGGTCTTACAGAATCATGCCCGAAAGTCTTACAGAAT
1 CCCGGAGGTCTTAGAAAATCATGTCCGAAGGTCTTACAGAAT-ATACCCGAAAGTCTTACAGAAT
* * ** *
248941 TATCCAGAGGTCTTAAAAATCATGCCCGGAGGTCTTACAAAATTGACTGGGATAACACCGTAAGT
65 CATCCAGAGGTCTTAAAAATCATGCCCAGAGGTCTTACAAAATTGACTAAGATAACACCATAAGT
* * *
249006 CAGAAATAAAGAATCGATCGGGACAACACCGCGAATCGAAATTATG
130 CAAAAATAAAGAATCGATCAGGACAACACCGCAAATCGAAATTATG
* *
249052 CCCAGAGGTTTTAGAAA
1 CCCGGAGGTCTTAGAAA
249069 TCGGAGGTCT
Statistics
Matches: 162, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
176 86 0.53
177 56 0.35
178 15 0.09
179 5 0.03
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (175 bp):
CCCGGAGGTCTTAGAAAATCATGTCCGAAGGTCTTACAGAATATACCCGAAAGTCTTACAGAATC
ATCCAGAGGTCTTAAAAATCATGCCCAGAGGTCTTACAAAATTGACTAAGATAACACCATAAGTC
AAAAATAAAGAATCGATCAGGACAACACCGCAAATCGAAATTATG
Found at i:248907 original size:23 final size:23
Alignment explanation
Indices: 248873--248983 Score: 129
Period size: 23 Copynumber: 5.0 Consensus size: 23
248863 AATTGAATTT
*
248873 ATGCCCGGAGGTCTTAGAAAATC
1 ATGCCCGGAGGTCTTACAAAATC
* *
248896 ATGTCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAAAATC
* * * *
248919 ATGCCCGAAAGTCTTACAGAATT
1 ATGCCCGGAGGTCTTACAAAATC
*
248942 AT--CCAGAGGTCTTA-AAAATC
1 ATGCCCGGAGGTCTTACAAAATC
248962 ATGCCCGGAGGTCTTACAAAAT
1 ATGCCCGGAGGTCTTACAAAAT
248984 TGACTGGGAT
Statistics
Matches: 72, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
20 6 0.08
21 9 0.12
22 11 0.15
23 46 0.64
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAAAATC
Found at i:248976 original size:43 final size:44
Alignment explanation
Indices: 248873--248984 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 44
248863 AATTGAATTT
* * * *
248873 ATGCCCGGAGGTCTTAGAAAATCATGTCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAAAAT--TATCCAGAGGTCTTACAAAATC
* * *
248919 ATGCCCGAAAGTCTTACAGAATTATCCAGAGGTCTTA-AAAATC
1 ATGCCCGGAGGTCTTACAAAATTATCCAGAGGTCTTACAAAATC
248962 ATGCCCGGAGGTCTTACAAAATT
1 ATGCCCGGAGGTCTTACAAAATT
248985 GACTGGGATA
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
43 25 0.45
44 13 0.23
46 18 0.32
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (44 bp):
ATGCCCGGAGGTCTTACAAAATTATCCAGAGGTCTTACAAAATC
Found at i:249317 original size:41 final size:41
Alignment explanation
Indices: 249246--249328 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
249236 CCTTCTAAGT
*
249246 AGAGGCTTTGAAATCTTGATTCAAATTGGTTCCTCTTAAAC
1 AGAGACTTTGAAATCTTGATTCAAATTGGTTCCTCTTAAAC
* *
249287 AGAGACTTTGAAATCTTGATTGAGAA-TGGTTCTTCTTAAAC
1 AGAGACTTTGAAATCTTGATTCA-AATTGGTTCCTCTTAAAC
249328 A
1 A
249329 AAAACTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 36 0.95
42 2 0.05
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36
Consensus pattern (41 bp):
AGAGACTTTGAAATCTTGATTCAAATTGGTTCCTCTTAAAC
Found at i:251016 original size:15 final size:16
Alignment explanation
Indices: 250998--251030 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
250988 TTTTTTCTTC
*
250998 TTTTTTTGTTT-TTTT
1 TTTTTTTATTTATTTT
251013 TTTTTTTATTTATTTT
1 TTTTTTTATTTATTTT
251029 TT
1 TT
251031 ATGCCCCATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.06, C:0.00, G:0.03, T:0.91
Consensus pattern (16 bp):
TTTTTTTATTTATTTT
Done.