Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168193.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_43, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 234249
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 6
Found at i:41188 original size:13 final size:12
Alignment explanation
Indices: 41142--41193 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
41132 ATTGTTTGGC
41142 AATAATAGTTAAT
1 AATAATA-TTAAT
41155 AA-AATATTAAT
1 AATAATATTAAT
41166 AATAACTATTAACT
1 AATAA-TATTAA-T
*
41180 ATTAATATT-AT
1 AATAATATTAAT
41191 AAT
1 AAT
41194 TAATTATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 10 0.29
12 7 0.21
13 12 0.35
14 5 0.15
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:41247 original size:36 final size:35
Alignment explanation
Indices: 41188--41272 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 35
41178 CTATTAATAT
*
41188 TATAATTAATTATAAGTTATAATTAAAATTATTTGA
1 TATAATTAATTATAAATTATAATT-AAATTATTTGA
* * *
41224 TATAATTATATT-TAAATTTTAATTTAATTA-TTAA
1 TATAATTA-ATTATAAATTATAATTAAATTATTTGA
41258 TAGTAATTAAGTTAT
1 TA-TAATTAA-TTAT
41273 TTTATTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
34 6 0.15
35 13 0.32
36 19 0.46
37 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.51
Consensus pattern (35 bp):
TATAATTAATTATAAATTATAATTAAATTATTTGA
Found at i:42527 original size:16 final size:17
Alignment explanation
Indices: 42506--42539 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
42496 TAGCGATTAG
42506 AAATAG-ATAATTATTT
1 AAATAGCATAATTATTT
42522 AAATAGTCATAATTATTT
1 AAATAG-CATAATTATTT
42540 GTATTTGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (17 bp):
AAATAGCATAATTATTT
Found at i:42692 original size:177 final size:180
Alignment explanation
Indices: 42283--42721 Score: 433
Period size: 177 Copynumber: 2.5 Consensus size: 180
42273 TTATGAAGAA
* ** * * * *
42283 AAACAATTGTGTCATGAGAAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGT
1 AAACAATTGTTTTGTGACAAAACAAAAAGTCATAACGATTTGAAATAGATAATTATTCAAATAGT
* ** * * *
42348 TATAATTATTTAAACTTATTCGATAAATAGATTTATTTTTTAAATCTTTTACTTATTAGTTGTCT
66 CATAATTATTTGTACTTATTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTA-TTGTCA
* * *** * * * * *
42413 GTATATTAATAAATTTGTATAATTTTATTTGAAATAAGCTTGTATGAATAG
130 GAATATTAATAAAATAAAATAATATTATTTCAAATAAGCTAGTAAGAACAG
* * * * * * *
42464 AAA-ATTTTGTTTTAG-GACAAAAGAAAAGGTTATAGCGATTAGAAATAGATAATTATTTAAATA
1 AAACA-ATTGTTTT-GTGACAAAACAAAAAGTCATAACGATTTGAAATAGATAATTATTCAAATA
* *
42527 GTCATAATTATTTGTATTTGTTCGATAAACAGATTTATTTTTTAAATCTCTTA-TTAATT-TT-T
64 GTCATAATTATTTGTACTTATTCGATAAACAGATTTATTTTTTAAATCTCTTACTT-ATTATTGT
* *
42589 -AGAATATTAATAAAATAAAATTATATTGTTTCAAATAAGCTAGTACAG-ACAG
128 CAGAATATTAATAAAATAAAATAATATTATTTCAAATAAGCTAGTA-AGAACAG
* * * *
42641 AAACAATTGTTTTGTGATAAAACAAAATGTCATAATGATTTGAAATAGATAATTATTCAAACAGT
1 AAACAATTGTTTTGTGACAAAACAAAAAGTCATAACGATTTGAAATAGATAATTATTCAAATAGT
*
42706 CATAACTATTTGTACT
66 CATAATTATTTGTACT
42722 GGTCAAGCCA
Statistics
Matches: 206, Mismatches: 46, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
176 1 0.00
177 102 0.50
178 3 0.01
179 2 0.01
180 3 0.01
181 95 0.46
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (180 bp):
AAACAATTGTTTTGTGACAAAACAAAAAGTCATAACGATTTGAAATAGATAATTATTCAAATAGT
CATAATTATTTGTACTTATTCGATAAACAGATTTATTTTTTAAATCTCTTACTTATTATTGTCAG
AATATTAATAAAATAAAATAATATTATTTCAAATAAGCTAGTAAGAACAG
Found at i:43047 original size:13 final size:13
Alignment explanation
Indices: 43025--43059 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
43015 TTATTAACAT
*
43025 ATAATTATTATAA
1 ATAATAATTATAA
43038 ATAATAATTATAA
1 ATAATAATTATAA
43051 ATACATAAT
1 ATA-ATAAT
43060 AACAATTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATAATTATAA
Found at i:43126 original size:22 final size:22
Alignment explanation
Indices: 43101--43149 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
43091 TAATAACAAA
43101 ATATTAT-AGTATTATAGTTAAT
1 ATATTATAAGT-TTATAGTTAAT
* *
43123 ATATAATAAGTTTATATTTAAT
1 ATATTATAAGTTTATAGTTAAT
43145 A-ATTA
1 ATATTA
43150 CTATTAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 3 0.13
22 17 0.74
23 3 0.13
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (22 bp):
ATATTATAAGTTTATAGTTAAT
Found at i:43734 original size:22 final size:24
Alignment explanation
Indices: 43699--43743 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
43689 AACTATTATA
*
43699 TATATATATCAATTATTAGTAATT
1 TATATATATCAATTATTAATAATT
43723 TATATA-AT-AATTATTAATAAT
1 TATATATATCAATTATTAATAAT
43744 AATTGAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 2 0.10
24 6 0.30
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
TATATATATCAATTATTAATAATT
Found at i:44649 original size:181 final size:180
Alignment explanation
Indices: 44211--45307 Score: 971
Period size: 177 Copynumber: 6.1 Consensus size: 180
44201 TAATTAATTA
* * * * *
44211 AAATAGTCATAACTATTTGAACTGGTTTAGTAAATAGATTTAGTTTTTAAATC---T-CTTATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATTA
** * * * ** * *
44272 ATTTTCAAAATATTAATAAATCAAAATTATTTTATTTTGGATAATTTTGTATTAACAGAAACAAT
66 ATTTT-GGAATATTAATAAATTAATATTATTTTATTTTGAATAAGCTTGTATGAATAGAAACAAT
* * * *
44337 TTTTTTATAACAAAACAAAAAGGTCATAACAATTTGAAATAGATAATTGTTC
130 TATTTTATGACAAAAC-AAAAGGTCATAACTATTAGAAATAGATAATTGTTC
* * * * * ** *
44389 TAATGGACATGACTATTTGAACTTATTC-GATAAACAAATTTATTTTTTAAATCTCCTACCTATT
1 AAATAGTCATAACTATTTGAACTTGTTCAG-TAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * * * *
44453 AA-TTTGCAAAATATTAATAAAGTAGTATTAATTTATTTTGAATAAACTTGTATGAATAGAAACA
65 AATTTTG--GAATATTAATAAATTAATATTATTTTATTTTGAATAAGCTTGTATGAATAGAAACA
** * *
44517 ATTATTTTATGACAAAACAAAATATCATAACTATTAGAAATAAAAAATTGTTC
128 ATTATTTTATGACAAAACAAAAGGTCATAACTATTAGAAATAGATAATTGTTC
* * * * * * *
44570 AAACAATTATAACTATTTGAGCTTACTT-AGTAAACATATTTATTTTTTAAATCTTTTACTAATT
1 AAATAGTCATAACTATTTGAACTT-GTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATT
* * *
44634 AATTATTGGAATATTATTAAATTAGTATTATTTTATTTTGAATAAGCTTATAT-AGATAGAAACA
65 AATT-TTGGAATATTAATAAATTAATATTATTTTATTTTGAATAAGCTTGTATGA-ATAGAAACA
** * *
44698 ATTGGTTCATCACAAAACAAAAGGTCATAACTATTTA-AAATAGATAATTG-TC
128 ATTATTTTATGACAAAACAAAAGGTCATAACTA-TTAGAAATAGATAATTGTTC
* * ** * *
44750 AAATAGTCA-ATCTATTTGAACATGTTCAAAAAAGAAATTTATTTTTAAAAT-TTTTACTTATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATT-
* * * * *
44813 AATTTTAGAATATTAATAAATTTA-ATTATTTTA-TTCGAAATAAGCTTGTA-CAGATAGAAATA
65 AATTTTGGAATATTAATAAATTAATATTATTTTATTTTG-AATAAGCTTGTATGA-ATAGAAACA
** * * * *
44875 ATTGGTTTATCACAAAACAAAAGGTCATAACTATTTGAAATAAATAACTGTTC
128 ATTATTTTATGACAAAACAAAAGGTCATAACTATTAGAAATAGATAATTGTTC
* * * ** * *
44928 AAATAGTCAGAACTATTCGAACATGTTCAAAAAATAAATTTATTTTTTTAAT-TTTTACTTATTA
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATT-
* * *
44992 AATTTTGGAATATT--TTAATTTA-ATTATTTTA-TTTGAAATAAGTTTGTATGAATAGAAACAA
65 AATTTTGGAATATTAATAAATTAATATTATTTTATTTTG-AATAAGCTTGTATGAATAGAAACAA
* * * *
45053 TTATTTTATGGCAAAGCAAAAGGTCATAACGATTTA-AAATAGATAATTTTTC
129 TTATTTTATGACAAAACAAAAGGTCATAACTA-TTAGAAATAGATAATTGTTC
* * * * * *
45105 AAATAGTCATCACTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAAATCTCTTACTCATT
1 AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTT-AAATCTTTTACTTATT
* * ** * * * *
45170 AATTTTTAGAATATTAATAAATTAATAATATTTTATTTCAAATAAGCCTATATGAATTGATACAA
65 AA-TTTTGGAATATTAATAAATTAATATTATTTTATTTTGAATAAGCTTGTATGAATAGAAACAA
* * * *
45235 TTATTTTGTGACAAAACAATAGGTCATAA-TGATTTGAAATAGATAATTATTC
129 TTATTTTATGACAAAACAAAAGGTCATAACT-ATTAGAAATAGATAATTGTTC
*
45287 AAATAGTTATGAA-TATTTGAA
1 AAATAGTCAT-AACTATTTGAA
45308 TTATAAGATT
Statistics
Matches: 750, Mismatches: 137, Indels: 60
0.79 0.14 0.06
Matches are distributed among these distances:
176 5 0.01
177 191 0.25
178 88 0.12
179 116 0.15
180 9 0.01
181 174 0.23
182 161 0.21
183 6 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
AAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATTA
ATTTTGGAATATTAATAAATTAATATTATTTTATTTTGAATAAGCTTGTATGAATAGAAACAATT
ATTTTATGACAAAACAAAAGGTCATAACTATTAGAAATAGATAATTGTTC
Found at i:44929 original size:358 final size:355
Alignment explanation
Indices: 44296--45263 Score: 961
Period size: 358 Copynumber: 2.7 Consensus size: 355
44286 AATAAATCAA
* * * *
44296 AATTATTTTATTTTGGATAATTTTGTATTA-ACAGAAACAATTTTTTTATAACAAAACAAAAAGG
1 AATTATTTTATTTTGAATAAGTTTGTA-TAGATAGAAACAATTATTTTATAACAAAAC-AAAAGG
* * * * * *
44360 TCATAACAATTTGAAATAGATAATTGTTCTAATGGACATGACTATTTGAACTTATTCGATAAACA
64 TCATAACAATTTAAAATAGATAATTG-TCAAATAGTCAT-ACTATTTGAACTTGTTCAATAAACA
* * * * * * *
44425 AATTTATTTTTTAAATCTCCTACCTATT-AATTTGCAAAATATTAATAAAGTAGTATTAATTTAT
127 AATTTATTTTTAAAATCTCTTACTTATTAAATTT-TAGAATATTAATAAATTA--ATTATTTTAT
* * * * * *
44489 TTTG-AATAAACTTGTATGAATAGAAACAATTATTTTATGACAAAACAAAATATCATAACTATTA
189 TTCGAAATAAGCTTGTAAGAATAGAAACAATTAGTTTATCACAAAACAAAAGATCATAACTATTA
* * * * * * ** *
44553 GAAATAAAAAATTGTTCAAACAATTATAACTATTTGAGCTTACTT-AGTAAACATATTTATTTTT
254 GAAATAAAAAACTGTTCAAACAATCAGAACTATTCGAACAT-CTTCAAAAAACAAATTTATTTTT
44617 TAAATCTTTTACTAATT-AATTATTGGAATATTATTAAATT
318 TAAAT-TTTTACTAATTAAATT-TTGGAATATT-TTAAATT
* * ** * *
44657 AGTATTATTTTATTTTGAATAAGCTTATATAGATAGAAACAATTGGTTCATCACAAAACAAAAGG
1 A--ATTATTTTATTTTGAATAAGTTTGTATAGATAGAAACAATTATTTTATAACAAAACAAAAGG
* * * *
44722 TCATAACTATTTAAAATAGATAATTGTCAAATAGTCA-ATCTATTTGAACATGTTCAAAAAAGAA
64 TCATAACAATTTAAAATAGATAATTGTCAAATAGTCATA-CTATTTGAACTTGTTCAATAAACAA
*
44786 ATTTATTTTTAAAAT-TTTTACTTATTAAATTTTAGAATATTAATAAATTTAATTATTTTA-TTC
128 ATTTATTTTTAAAATCTCTTACTTATTAAATTTTAGAATATTAATAAA-TTAATTATTTTATTTC
* * * *
44849 GAAATAAGCTTGTACAG-ATAGAAATAATTGGTTTATCACAAAACAAAAGGTCATAACTATTTGA
192 GAAATAAGCTTGTA-AGAATAGAAACAATTAGTTTATCACAAAACAAAAGATCATAACTATTAGA
* * * * * *
44913 AATAAATAACTGTTCAAATAGTCAGAACTATTCGAACATGTTCAAAAAATAAATTTATTTTTTTA
256 AATAAAAAACTGTTCAAACAATCAGAACTATTCGAACATCTTCAAAAAACAAATTTATTTTTTAA
* *
44978 ATTTTTACTTATTAAATTTTGGAATATTTTAATTT
321 ATTTTTACTAATTAAATTTTGGAATATTTTAAATT
** *
45013 AATTATTTTA-TTTGAAATAAGTTTGTAT-GAATAGAAACAATTATTTTATGGCAAAGCAAAAGG
1 AATTATTTTATTTTG-AATAAGTTTGTATAG-ATAGAAACAATTATTTTATAACAAAACAAAAGG
* * * *
45076 TCATAACGATTTAAAATAGATAATTTTTCAAATAGTCATCACTATTTAAACTTGTTCAGTAAACA
64 TCATAACAATTTAAAATAGATAA-TTGTCAAATAGTCAT-ACTATTTGAACTTGTTCAATAAACA
* * * *
45141 GATTCATTTTTTAAAATCTCTTACTCATTAATTTTTAGAATATTAATAAATTAATAATATTTTAT
127 AATTTA-TTTTTAAAATCTCTTACTTATTAAATTTTAGAATATTAATAAATTAAT--TATTTTAT
* * * * * * * * * *
45206 TTC-AAATAAGCCTATATGAATTGATACAATTATTTTGTGACAAAACAATAGGTCATAA
189 TTCGAAATAAGCTTGTAAGAATAGAAACAATTAGTTTATCACAAAACAAAAGATCATAA
45264 TGATTTGAAA
Statistics
Matches: 501, Mismatches: 85, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
353 5 0.01
354 69 0.14
355 13 0.03
356 30 0.06
357 41 0.08
358 142 0.28
359 72 0.14
360 44 0.09
361 9 0.02
362 32 0.06
363 44 0.09
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (355 bp):
AATTATTTTATTTTGAATAAGTTTGTATAGATAGAAACAATTATTTTATAACAAAACAAAAGGTC
ATAACAATTTAAAATAGATAATTGTCAAATAGTCATACTATTTGAACTTGTTCAATAAACAAATT
TATTTTTAAAATCTCTTACTTATTAAATTTTAGAATATTAATAAATTAATTATTTTATTTCGAAA
TAAGCTTGTAAGAATAGAAACAATTAGTTTATCACAAAACAAAAGATCATAACTATTAGAAATAA
AAAACTGTTCAAACAATCAGAACTATTCGAACATCTTCAAAAAACAAATTTATTTTTTAAATTTT
TACTAATTAAATTTTGGAATATTTTAAATT
Found at i:46232 original size:9 final size:9
Alignment explanation
Indices: 46208--46237 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
46198 TAAAATTTAT
46208 TAATTATAA
1 TAATTATAA
46217 CTAATTATAA
1 -TAATTATAA
46227 TAATTATAA
1 TAATTATAA
46236 TA
1 TA
46238 TATGCTGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (9 bp):
TAATTATAA
Found at i:46642 original size:16 final size:16
Alignment explanation
Indices: 46621--46665 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
46611 TTAATATTTG
46621 TAATATTACTAATAAT-
1 TAATATTA-TAATAATA
46637 TAATATTAT-ATAATA
1 TAATATTATAATAATA
46652 TAATAATTATAATA
1 TAAT-ATTATAATA
46666 TTTTTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 5 0.19
16 13 0.50
17 3 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TAATATTATAATAATA
Found at i:46684 original size:20 final size:20
Alignment explanation
Indices: 46650--46703 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
46640 TATTATATAA
46650 TATAATAATTA-TAATATTT-T
1 TATAA-AATTAGTAAT-TTTGT
46670 TATAAAATTAGTAATTTTGT
1 TATAAAATTAGTAATTTTGT
46690 TATTCAAAATTAGT
1 TA-T-AAAATTAGT
46704 TATGACATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 8 0.27
20 12 0.40
21 1 0.03
22 9 0.30
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (20 bp):
TATAAAATTAGTAATTTTGT
Found at i:47271 original size:19 final size:17
Alignment explanation
Indices: 47249--47292 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
47239 ATTAATAACT
47249 TAATTATTAATATTTATTA
1 TAATTATTAATATTTA--A
*
47268 TAATTA-TATTATTTAA
1 TAATTATTAATATTTAA
47284 TAATTATTA
1 TAATTATTA
47293 TAAATTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 2 0.09
18 8 0.35
19 6 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TAATTATTAATATTTAA
Found at i:47293 original size:19 final size:17
Alignment explanation
Indices: 47249--47302 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 17
47239 ATTAATAACT
47249 TAATTATTA-ATATTTA
1 TAATTATTATATATTTA
* *
47265 TTATAATTATATTATTTAA
1 TAATTATTATA-TATTT-A
*
47284 TAATTATTATAAATTTA
1 TAATTATTATATATTTA
47301 TA
1 TA
47303 TGAACTATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
16 7 0.23
17 4 0.13
18 9 0.30
19 10 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATTATTATATATTTA
Found at i:47386 original size:23 final size:22
Alignment explanation
Indices: 47350--47393 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
47340 GTTTAAATTA
*
47350 ATATTTGAACTTTAATTATTTGT
1 ATATTTAAACTTTAA-TATTTGT
*
47373 ATATTTAAAGTTTAATATTTG
1 ATATTTAAACTTTAATATTTG
47394 AATTGTTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.34, C:0.02, G:0.09, T:0.55
Consensus pattern (22 bp):
ATATTTAAACTTTAATATTTGT
Found at i:48318 original size:10 final size:10
Alignment explanation
Indices: 48305--48361 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
48295 ATTAAAAATT
48305 ATTTATAATA
1 ATTTATAATA
48315 ATTTATAATA
1 ATTTATAATA
48325 ATTTATTAATTA
1 ATTTA-TAA-TA
48337 A-TTAT--TA
1 ATTTATAATA
*
48344 AATTATTAATA
1 ATTTA-TAATA
48355 ATTTATA
1 ATTTATA
48362 TTAAATTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
9 1 0.03
10 18 0.45
11 12 0.30
12 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
ATTTATAATA
Found at i:48333 original size:40 final size:39
Alignment explanation
Indices: 48289--48374 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
48279 TATATCTAAA
*
48289 ATTAAT-ATTA-AAAATTATTTATAATAATTTATAATAATTT
1 ATTAATAATTATAAAATTA--T-TAATAATTTATAATAAATT
* *
48329 ATTAATTAATTATTAAATTATTAATAATTTATATTAAATT
1 ATTAA-TAATTATAAAATTATTAATAATTTATAATAAATT
48369 ATTAAT
1 ATTAAT
48375 TTTACATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
39 1 0.03
40 27 0.68
41 2 0.05
42 4 0.10
43 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (39 bp):
ATTAATAATTATAAAATTATTAATAATTTATAATAAATT
Found at i:48349 original size:29 final size:29
Alignment explanation
Indices: 48317--48556 Score: 98
Period size: 29 Copynumber: 8.2 Consensus size: 29
48307 TTATAATAAT
48317 TTATAATAATTTATTAATTAATTATTAAA
1 TTATAATAATTTATTAATTAATTATTAAA
*
48346 TTATTAATAATTTA-T-ATTAAATTATTAATT
1 TTA-TAATAATTTATTAATT-AATTATTAA-A
*
48376 TTACATTATAATTTA-TAATTATATTA-TAAA
1 TT--ATAATAATTTATTAATTA-ATTATTAAA
* * *
48406 TTA-ACATAA--TATTAAATAAGTATTATA
1 TTATA-ATAATTTATTAATTAATTATTAAA
* * *
48433 -TATTATAA-TTA--AATTAAATAATTCAA
1 TTATAATAATTTATTAATT-AATTATTAAA
* *
48459 TT-T-A-AATTTAATATAATTTATTACGTAAA
1 TTATAATAATTT-AT-TAATTAATTA-TTAAA
* *
48488 TTATAAT-ATTAATTAATTATTTATTATATA
1 TTATAATAATTTATTAATTAATTATTA-A-A
*
48518 TTAATTATAATTTTAGTTATATTAATTATTAAA
1 TT-ATAATAA-TTTA-TTA-ATTAATTATTAAA
48551 TT-TAAT
1 TTATAAT
48557 TTATTATTAT
Statistics
Matches: 156, Mismatches: 25, Indels: 58
0.65 0.10 0.24
Matches are distributed among these distances:
24 2 0.01
25 6 0.04
26 19 0.12
27 11 0.07
28 13 0.08
29 31 0.20
30 20 0.13
31 25 0.16
32 9 0.06
33 6 0.04
34 4 0.03
35 10 0.06
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (29 bp):
TTATAATAATTTATTAATTAATTATTAAA
Found at i:48402 original size:11 final size:11
Alignment explanation
Indices: 48301--48610 Score: 62
Period size: 11 Copynumber: 27.1 Consensus size: 11
48291 TAATATTAAA
48301 AATTAT-TTAT
1 AATTATATTAT
*
48311 AATAAT-TTAT
1 AATTATATTAT
*
48321 AATAAT-TTATT
1 AATTATATTA-T
48332 AATTA-ATTATT
1 AATTATATTA-T
*
48343 AAATTAT-TAAT
1 -AATTATATTAT
48354 AATTTATATTA-
1 AA-TTATATTAT
*
48365 AATTATTAATTTT
1 AATTA-T-ATTAT
48378 ACATTATAATTTAT
1 A-ATTAT-A-TTAT
48392 AATTATATTAT
1 AATTATATTAT
* *
48403 AAATTAACATAAT
1 -AATT-ATATTAT
* *
48416 -ATTAAATAAGT
1 AATTATATTA-T
*
48427 ATTATATATTAT
1 AAT-TATATTAT
*
48439 AATTAAATTAAAT
1 AATTATATT--AT
48452 AATTCA-ATT-T
1 AATT-ATATTAT
*
48462 AAATT-TAATAT
1 -AATTATATTAT
48473 AATT-TATTACGT
1 AATTATATTA--T
*
48485 AAATTATAATATT
1 -AATTATATTA-T
48498 AATTA-ATTATT
1 AATTATATTA-T
*
48509 TATTATA-TATT
1 AATTATATTA-T
*
48520 AATTATAATTTT
1 AATTAT-ATTAT
*
48532 AGTTATATTAAT
1 AATTATATT-AT
* *
48544 TATTAAATT-T
1 AATTATATTAT
48554 AATTTATTATTAT
1 AA-TTA-TATTAT
48567 AA-TATATTAAT
1 AATTATATT-AT
*
48578 AAGTAATATTAT
1 AA-TTATATTAT
48590 AATTAGTA-TAT
1 AATTA-TATTAT
48601 --TTATATTAT
1 AATTATATTAT
48610 A
1 A
48611 TTTTTATTAA
Statistics
Matches: 230, Mismatches: 31, Indels: 78
0.68 0.09 0.23
Matches are distributed among these distances:
8 2 0.01
9 6 0.03
10 45 0.20
11 71 0.31
12 51 0.22
13 42 0.18
14 13 0.06
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (11 bp):
AATTATATTAT
Found at i:48496 original size:24 final size:24
Alignment explanation
Indices: 48461--48506 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
48451 TAATTCAATT
*
48461 TAAATTTAATA-TAATTTATTACG
1 TAAATTTAATATTAATTAATTACG
48484 TAAATTATAATATTAATTAATTA
1 TAAATT-TAATATTAATTAATTA
48507 TTTATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAATTTAATATTAATTAATTACG
Found at i:48522 original size:28 final size:27
Alignment explanation
Indices: 48491--48618 Score: 72
Period size: 28 Copynumber: 4.6 Consensus size: 27
48481 ACGTAAATTA
48491 TAATATTAATTAATTATTTATTATATAT
1 TAATATTAATT-ATTATTTATTATATAT
48519 TAAT-TATAATT-TTAGTTATATTA-ATTAT
1 TAATAT-TAATTATTA-TT-TATTATA-TAT
*
48547 TAA-ATTTAATTTATTA-TTATAATATAT
1 TAATA-TTAA-TTATTATTTATTATATAT
* *
48574 TAATAAGTAA-TATTA-TAATTAGTATAT
1 TAAT-ATTAATTATTATTTATTA-TATAT
* *
48601 TTATATTATATTTTTATT
1 TAATATTA-ATTATTATT
48619 AAATAGAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 29
0.68 0.06 0.25
Matches are distributed among these distances:
26 15 0.19
27 23 0.29
28 32 0.41
29 5 0.06
30 3 0.04
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (27 bp):
TAATATTAATTATTATTTATTATATAT
Found at i:48524 original size:34 final size:34
Alignment explanation
Indices: 48486--48622 Score: 102
Period size: 34 Copynumber: 3.9 Consensus size: 34
48476 TTATTACGTA
* *
48486 AATTATAATATTAATTA-ATTATTTATTATATATT
1 AATTATAATATTAATTATATTAATTATTAAAT-TT
* *
48520 AATTATAATTTTAGTTATATTAATTATTAAATTT
1 AATTATAATATTAATTATATTAATTATTAAATTT
* * * *
48554 AATT-TATTATTATAATATATTAATAAGTAATATTAT
1 AATTATAATATTA-ATTATATTAATTATTAA-ATT-T
*
48590 AATTAGT-ATATTTATATTATATT-TTTATTAAAT
1 AATTA-TAATA-TTA-ATTATATTAATTATTAAAT
48623 AGAAAATTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
33 6 0.07
34 34 0.42
35 15 0.19
36 7 0.09
37 7 0.09
38 12 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (34 bp):
AATTATAATATTAATTATATTAATTATTAAATTT
Found at i:48538 original size:21 final size:21
Alignment explanation
Indices: 48514--48569 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
48504 TTATTTATTA
*
48514 TATATTAATTATAATTTTAGT
1 TATATTAATTATAATTTTAAT
*
48535 TATATTAATTATTAAATTTAAT
1 TATATTAATTA-TAATTTTAAT
48557 T-TATT-ATTATAAT
1 TATATTAATTATAAT
48570 ATATTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 4 0.13
21 15 0.48
22 9 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TATATTAATTATAATTTTAAT
Found at i:48642 original size:12 final size:12
Alignment explanation
Indices: 48616--48727 Score: 57
Period size: 11 Copynumber: 9.8 Consensus size: 12
48606 TTATATTTTT
* *
48616 ATTAAATAGAAA
1 ATTAAATATATA
48628 ATTAAATATATA
1 ATTAAATATATA
*
48640 ATTTATAATCTAT-
1 A-TTA-AATATATA
48653 A-T-AATATTATA
1 ATTAAATA-TATA
48664 ATTAAATATAT-
1 ATTAAATATATA
48675 -TTCAAA-AT-TA
1 ATT-AAATATATA
*
48685 ATTATATAT-TA
1 ATTAAATATATA
48696 ATT-AATA-ATAA
1 ATTAAATATAT-A
48707 ATTAAAT-TATA
1 ATTAAATATATA
*
48718 ATTTAATATA
1 ATTAAATATA
48728 AGGATCATAG
Statistics
Matches: 78, Mismatches: 7, Indels: 30
0.68 0.06 0.26
Matches are distributed among these distances:
9 4 0.05
10 13 0.17
11 25 0.32
12 22 0.28
13 8 0.10
14 6 0.08
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.44
Consensus pattern (12 bp):
ATTAAATATATA
Found at i:48655 original size:16 final size:17
Alignment explanation
Indices: 48634--48665 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48624 GAAAATTAAA
48634 TATATAAT-TTATAATC
1 TATATAATATTATAATC
48650 TATATAATATTATAAT
1 TATATAATATTATAAT
48666 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TATATAATATTATAATC
Found at i:48724 original size:38 final size:39
Alignment explanation
Indices: 48545--48724 Score: 106
Period size: 38 Copynumber: 4.5 Consensus size: 39
48535 TATATTAATT
48545 ATTAAATT-TAATTT-ATTATTATAATATATTAATAAGTAA
1 ATTAAATTATAATTTAATTA-TATAATA-ATTAATAAGTAA
** * *
48584 TATTATAATTAGTATATTTATATTATATTTTTATTAA-ATAGAAA
1 -ATTA-AATTA-TA-ATTTA-ATTATATAATAATTAATA-AGTAA
*
48628 ATTAAATATATAATTTATAATCTATATAAT-ATT-ATAATTAA
1 ATTAAAT-TATAA-TT-TAAT-TATATAATAATTAATAAGTAA
* * *
48669 A-TATATT-TCAAAATTAATTATATATTAATTAATAA-TAA
1 ATTAAATTAT--AATTTAATTATATAATAATTAATAAGTAA
48707 ATTAAATTATAATTTAAT
1 ATTAAATTATAATTTAAT
48725 ATAAGGATCA
Statistics
Matches: 109, Mismatches: 13, Indels: 38
0.68 0.08 0.24
Matches are distributed among these distances:
37 7 0.06
38 19 0.17
39 11 0.10
40 11 0.10
41 10 0.09
42 13 0.12
43 17 0.16
44 13 0.12
45 4 0.04
46 4 0.04
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (39 bp):
ATTAAATTATAATTTAATTATATAATAATTAATAAGTAA
Found at i:49841 original size:6 final size:6
Alignment explanation
Indices: 49824--49876 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
49814 TTCAAGTTAT
*
49824 TTAATAA TTAATA TTAATA CTTAA-A TT-ATA TTAATA TTAATA -TAATT
1 TTAAT-A TTAATA TTAATA -TTAATA TTAATA TTAATA TTAATA TTAATA
49871 TTAATA
1 TTAATA
49877 ATTTATAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
4 1 0.03
5 9 0.22
6 21 0.52
7 9 0.22
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:49856 original size:17 final size:17
Alignment explanation
Indices: 49829--49876 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
49819 GTTATTTAAT
49829 AATTAATATTAATACTTA
1 AATTAATATTAATA-TTA
49847 AATT-ATATTAATATT-
1 AATTAATATTAATATTA
*
49862 AATATAATTTTAATA
1 AAT-TAATATTAATA
49877 ATTTATAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 3 0.11
16 3 0.11
17 17 0.63
18 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTAATATTAATATTA
Found at i:50017 original size:22 final size:22
Alignment explanation
Indices: 49992--50095 Score: 72
Period size: 22 Copynumber: 4.7 Consensus size: 22
49982 TTTACTTATA
49992 AATTTATAATTATAATATTAAT
1 AATTTATAATTATAATATTAAT
* *
50014 AATTTATAA-TACTATTAATAAT
1 AATTTATAATTA-TAATATTAAT
**
50036 -ATATTATAAAAATAATATT-AT
1 AAT-TTATAATTATAATATTAAT
* * *
50057 AATATAATAATTATATTA-AAAT
1 AAT-TTATAATTATAATATTAAT
*
50079 AATTTAAAACTTATAAT
1 AATTTATAA-TTATAAT
50096 GTTTAGTCAA
Statistics
Matches: 63, Mismatches: 13, Indels: 12
0.72 0.15 0.14
Matches are distributed among these distances:
21 10 0.16
22 52 0.83
23 1 0.02
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTTATAATTATAATATTAAT
Found at i:50022 original size:16 final size:16
Alignment explanation
Indices: 49958--50068 Score: 63
Period size: 16 Copynumber: 7.0 Consensus size: 16
49948 TATCTATTTA
49958 TATAAGTATTAAT-A-T
1 TATAA-TATTAATAATT
* * *
49973 T-TAATATTATTTACT
1 TATAATATTAATAATT
*
49988 TATAA-ATTTATAA-T
1 TATAATATTAATAATT
50002 TATAATATTAATAATT
1 TATAATATTAATAATT
*
50018 TATAATACTATTAATAATA
1 TAT-A-A-TATTAATAATT
* **
50037 TATTATAAAAATAATAT
1 TATAATATTAATAAT-T
50054 TATAATA-TAATAATT
1 TATAATATTAATAATT
50069 ATATTAAAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 18
0.71 0.11 0.17
Matches are distributed among these distances:
13 6 0.08
14 10 0.13
15 16 0.21
16 21 0.28
17 8 0.11
18 1 0.01
19 13 0.17
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.48
Consensus pattern (16 bp):
TATAATATTAATAATT
Found at i:50072 original size:19 final size:20
Alignment explanation
Indices: 49995--50079 Score: 71
Period size: 19 Copynumber: 4.7 Consensus size: 20
49985 ACTTATAAAT
49995 TTATAATTATAATATTAATAA
1 TTAT-ATTATAATATTAATAA
* *
50016 TT-TATAATACTATTAATAA
1 TTATATTATAATATTAATAA
50035 -TATATTATAA-A--AAT-A
1 TTATATTATAATATTAATAA
50050 --ATATTATAATA-TAATAA
1 TTATATTATAATATTAATAA
*
50067 TTATATTAAAATA
1 TTATATTATAATA
50080 ATTTAAAACT
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
14 9 0.17
15 2 0.04
16 6 0.11
17 1 0.02
18 2 0.04
19 30 0.57
20 1 0.02
21 2 0.04
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (20 bp):
TTATATTATAATATTAATAA
Found at i:50082 original size:14 final size:15
Alignment explanation
Indices: 50026--50079 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
50016 TTTATAATAC
50026 TATTAATAATATATTA
1 TATTAA-AATATATTA
50042 TA--AAAATAATATTA
1 TATTAAAAT-ATATTA
* *
50056 TAATATAATA-ATTA
1 TATTAAAATATATTA
50070 TATTAAAATA
1 TATTAAAATA
50080 ATTTAAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.09
14 22 0.69
15 1 0.03
16 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TATTAAAATATATTA
Found at i:50095 original size:44 final size:44
Alignment explanation
Indices: 49958--50095 Score: 110
Period size: 44 Copynumber: 3.1 Consensus size: 44
49948 TATCTATTTA
* * * * *
49958 TATAAGTATTAATATTTAATATTA-T-TTACTTATAAATTTATAAT
1 TATAA-TATTAATAATTAATAATACTATTAATAAT-AATTTAAAAT
*
50002 TATAATATTAATAATTTATAATACTATTAATAATATATTATAAAA-
1 TATAATATTAATAATTAATAATACTATTAATAATA-ATT-TAAAAT
50047 -ATAATATT-ATAATATAATAATTA-TATTAA-AATAATTTAAAACT
1 TATAATATTAATAAT-TAATAA-TACTATTAATAATAATTTAAAA-T
50090 TATAAT
1 TATAAT
50096 GTTTAGTCAA
Statistics
Matches: 78, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
41 5 0.06
42 3 0.04
43 24 0.31
44 31 0.40
45 11 0.14
46 4 0.05
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (44 bp):
TATAATATTAATAATTAATAATACTATTAATAATAATTTAAAAT
Found at i:50156 original size:19 final size:19
Alignment explanation
Indices: 50119--50157 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
50109 TTATGAAATA
*
50119 ATTATTAAATAATATAATT
1 ATTATTAAATAATAGAATT
* *
50138 ATTATTAATTTATAGAATT
1 ATTATTAAATAATAGAATT
50157 A
1 A
50158 AATTACATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTATTAAATAATAGAATT
Found at i:50224 original size:18 final size:18
Alignment explanation
Indices: 50191--50242 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
50181 TATTTAGTAT
* *
50191 AAATATGAATATATTATA
1 AAATATGATTAAATTATA
*
50209 AAATATGATTAAATTAATT
1 AAATATGATTAAATT-ATA
50228 AAA-AT-ATTAAATTAT
1 AAATATGATTAAATTAT
50243 TTTTAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 2 0.07
17 8 0.27
18 15 0.50
19 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (18 bp):
AAATATGATTAAATTATA
Found at i:50571 original size:13 final size:13
Alignment explanation
Indices: 50553--50599 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
50543 AAATCTAAGA
50553 TAATTAATAATAT
1 TAATTAATAATAT
*
50566 TAATT-ATAATAA
1 TAATTAATAATAT
50578 TAATTAATAA-AT
1 TAATTAATAATAT
50590 TATATTAATA
1 TA-ATTAATA
50600 TAAATATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 14 0.47
13 16 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATTAATAATAT
Found at i:50836 original size:21 final size:21
Alignment explanation
Indices: 50816--50867 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
50806 TTTAAGTTTA
50816 AATATCATAT-ATAATATTTT
1 AATATCATATAATAATATTTT
* * *
50836 ATTATTATATAATAATATTAT
1 AATATCATATAATAATATTTT
50857 AAT-T-ATATAAT
1 AATATCATATAAT
50868 TTTATATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 9 0.33
21 11 0.41
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATCATATAATAATATTTT
Found at i:50879 original size:19 final size:19
Alignment explanation
Indices: 50823--50867 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
50813 TTAAATATCA
* *
50823 TATATAAT-ATTTTATTAT
1 TATATAATAATATTATAAT
50841 TATATAATAATATTATAAT
1 TATATAATAATATTATAAT
50860 TATATAAT
1 TATATAAT
50868 TTTATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATAATAATATTATAAT
Found at i:50906 original size:18 final size:16
Alignment explanation
Indices: 50836--50901 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
50826 ATAATATTTT
50836 ATTATTATAT-AA-TA
1 ATTATTATATAAATTA
*
50850 A-TATTATA-ATTATATA
1 ATTATTATATA-AAT-TA
*
50866 ATT-TTATATAAATTG
1 ATTATTATATAAATTA
50881 ATTATTATATAAATTA
1 ATTATTATATAAATTA
50897 ATTAT
1 ATTAT
50902 ATTATTAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
13 7 0.17
14 2 0.05
15 4 0.10
16 26 0.63
17 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATTATTATATAAATTA
Found at i:51816 original size:11 final size:10
Alignment explanation
Indices: 51782--51831 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
51772 TTTATTAATA
51782 ATAATTA-AT
1 ATAATTATAT
*
51791 ATTAATTGTATT
1 A-TAATTATA-T
51803 ATAATTATTAT
1 ATAATTA-TAT
51814 ATAATTA-AT
1 ATAATTATAT
51823 ATAATTATA
1 ATAATTATA
51832 ATAGTATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 10 0.29
10 6 0.18
11 14 0.41
12 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (10 bp):
ATAATTATAT
Found at i:52988 original size:32 final size:31
Alignment explanation
Indices: 52950--53014 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
52940 AAAATTATTT
* *
52950 TAATATTTAA-AATATTAAATATGTTATTAATA
1 TAATATTTAATAATA-TAAAT-GGTTAATAATA
52982 TAATATTTAATAATATAAATGGTTAATAATA
1 TAATATTTAATAATATAAATGGTTAATAATA
53013 TA
1 TA
53015 TTAAATTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 11 0.37
32 15 0.50
33 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
TAATATTTAATAATATAAATGGTTAATAATA
Found at i:54579 original size:20 final size:20
Alignment explanation
Indices: 54556--54595 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
54546 TTAATGAATT
*
54556 AATATTATT-TAATACTATAA
1 AATATGATTATAATA-TATAA
54576 AATATGATTATAATATATAA
1 AATATGATTATAATATATAA
54596 TAAATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (20 bp):
AATATGATTATAATATATAA
Found at i:54604 original size:9 final size:10
Alignment explanation
Indices: 54565--54623 Score: 50
Period size: 10 Copynumber: 5.7 Consensus size: 10
54555 TAATATTATT
54565 TAATACTATAA
1 TAATA-TATAA
*
54576 -AATATGATTA
1 TAATAT-ATAA
54586 TAATATATAA
1 TAATATATAA
54596 TAA-ATATAA
1 TAATATATAA
*
54605 TATTATTATAA
1 TAATA-TATAA
54616 TTAATATA
1 -TAATATA
54624 GTCAAATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
9 9 0.23
10 14 0.36
11 12 0.31
12 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (10 bp):
TAATATATAA
Found at i:54903 original size:20 final size:19
Alignment explanation
Indices: 54878--54940 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
54868 TATATATAAG
54878 TTATTATATAATTAATTAAC
1 TTATTATATAATTAATT-AC
* *
54898 TTATTAAAT-ATTATATTTC
1 TTATTATATAATTA-ATTAC
*
54917 -TATT-TATAATTAAATAC
1 TTATTATATAATTAATTAC
54934 TTATTAT
1 TTATTAT
54941 TATGCACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 5 0.15
18 12 0.35
19 6 0.18
20 11 0.32
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
TTATTATATAATTAATTAC
Found at i:55294 original size:28 final size:30
Alignment explanation
Indices: 55210--55295 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 30
55200 ACTTATAATT
* *
55210 AATTTATATTAATAA-ATTAATATAATAAGTTC
1 AATTAATATT-ATAATATT-ATAGAATAAG-TC
*
55242 AATTAATATT-TTATAATTA-AGAATAAG-C
1 AATTAATATTATAAT-ATTATAGAATAAGTC
55270 AATTAATATTATAATATTATA-AATAA
1 AATTAATATTATAATATTATAGAATAA
55296 ACTATATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
28 20 0.43
29 4 0.09
30 9 0.20
31 1 0.02
32 12 0.26
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.42
Consensus pattern (30 bp):
AATTAATATTATAATATTATAGAATAAGTC
Found at i:55419 original size:19 final size:19
Alignment explanation
Indices: 55395--55431 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
55385 TAATTAAATT
55395 ACTATAATAAATAATTATA
1 ACTATAATAAATAATTATA
* *
55414 ACTATAATTAATAGTTAT
1 ACTATAATAAATAATTAT
55432 TTATAGTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (19 bp):
ACTATAATAAATAATTATA
Found at i:55863 original size:9 final size:9
Alignment explanation
Indices: 55788--55896 Score: 51
Period size: 9 Copynumber: 11.3 Consensus size: 9
55778 TATTAATGAG
*
55788 TAATTAATA
1 TAATTATTA
55797 TAA-TATATA
1 TAATTAT-TA
*
55806 TTATTATTA
1 TAATTATTA
*
55815 TTATTATTA
1 TAATTATTA
*
55824 TTAATTGGTTA
1 -TAATT-ATTA
*
55835 TGGATTATTA
1 T-AATTATTA
**
55845 -AACCATTA
1 TAATTATTA
55853 TAATTATTA
1 TAATTATTA
55862 TATCATATATTA
1 TA--AT-TATTA
*
55874 TATTTATTA
1 TAATTATTA
55883 TAATATAATTA
1 TAAT-T-ATTA
55894 TAA
1 TAA
55897 AAATTATACT
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
8 7 0.09
9 34 0.45
10 13 0.17
11 15 0.20
12 7 0.09
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (9 bp):
TAATTATTA
Found at i:55874 original size:21 final size:20
Alignment explanation
Indices: 55849--55896 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
55839 TTATTAAACC
55849 ATTATAATTATTAT-ATCATA
1 ATTATAATTATTATAAT-ATA
*
55869 TATTATATTTATTATAATATA
1 -ATTATAATTATTATAATATA
55890 ATTATAA
1 ATTATAA
55897 AAATTATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 2 0.08
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTATAATTATTATAATATA
Found at i:56244 original size:34 final size:34
Alignment explanation
Indices: 56189--56267 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
56179 TATGTATTTA
56189 AATT-ATTATAATCTATCAATTTAATATTAAA-C
1 AATTAATTATAATCTATCAATTTAATATTAAATC
* * *
56221 AATATAATTATAATTTAAT-AATTTATTATTAAATT
1 AAT-TAATTATAATCT-ATCAATTTAATATTAAATC
56256 AATTAATTATAA
1 AATTAATTATAA
56268 AATTACTATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 3 0.08
33 1 0.03
34 31 0.77
35 5 0.12
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (34 bp):
AATTAATTATAATCTATCAATTTAATATTAAATC
Found at i:56258 original size:16 final size:16
Alignment explanation
Indices: 56239--56302 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
56229 TATAATTTAA
56239 TAATTTATTATTAAAT
1 TAATTTATTATTAAAT
* *
56255 TAATTAATTATAAAAT
1 TAATTTATTATTAAAT
* * *
56271 TACTATATTAATT-GAT
1 TAATTTATT-ATTAAAT
*
56287 TAATTTAATATTAAAT
1 TAATTTATTATTAAAT
56303 CTATTTTGAT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 30 0.86
17 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (16 bp):
TAATTTATTATTAAAT
Found at i:58005 original size:28 final size:28
Alignment explanation
Indices: 57973--58026 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
57963 ATAAATCTAT
*
57973 TTAATT-TATAATCTTTAATTAATTATAA
1 TTAATTATATAAT-TTTAATAAATTATAA
*
58001 TTAATTATTTAATTTTAATAAATTAT
1 TTAATTATATAATTTTAATAAATTAT
58027 TGCTATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (28 bp):
TTAATTATATAATTTTAATAAATTATAA
Found at i:58012 original size:18 final size:18
Alignment explanation
Indices: 57970--58027 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
57960 AAAATAAATC
57970 TATTTAATTTATAATCT--T
1 TATTTAA-TTATAAT-TAAT
*
57988 TAATTAATTATAATTAAT
1 TATTTAATTATAATTAAT
* *
58006 TATTTAATTTTAATAAAT
1 TATTTAATTATAATTAAT
58024 TATT
1 TATT
58028 GCTATAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 1 0.03
17 7 0.21
18 26 0.76
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TATTTAATTATAATTAAT
Found at i:58335 original size:16 final size:16
Alignment explanation
Indices: 58280--58358 Score: 58
Period size: 16 Copynumber: 4.9 Consensus size: 16
58270 AACGTAAATC
*
58280 ATATTATTGTTAGTATTA
1 ATATTATT-TTA-AATTA
* * *
58298 TTATTAATTTAATTTTA
1 ATATTATTTTAA-ATTA
58315 A-ATTATTTTAAATTA
1 ATATTATTTTAAATTA
58330 ATATTA--TT-AATTA
1 ATATTATTTTAAATTA
58343 ATATTATATTTAAATT
1 ATATTAT-TTTAAATT
58359 TTGAATGTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
13 11 0.23
14 2 0.04
15 4 0.08
16 15 0.31
17 10 0.21
18 6 0.12
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
ATATTATTTTAAATTA
Found at i:58341 original size:13 final size:13
Alignment explanation
Indices: 58325--58349 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58315 AATTATTTTA
58325 AATTAATATTATT
1 AATTAATATTATT
58338 AATTAATATTAT
1 AATTAATATTAT
58350 ATTTAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTAATATTATT
Found at i:58885 original size:16 final size:17
Alignment explanation
Indices: 58854--58886 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
58844 ATATTAAAAC
58854 AAATAATGATTTGAAAT
1 AAATAATGATTTGAAAT
*
58871 AAATAATTA-TTGAAAT
1 AAATAATGATTTGAAAT
58887 TGTAAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAATGATTTGAAAT
Found at i:59609 original size:17 final size:19
Alignment explanation
Indices: 59587--59632 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 19
59577 TATATAATAC
59587 TATTTATTATAT-AAATTG
1 TATTTATTATATAAAATTG
* *
59605 T-TTTATAAT-TAAAATTT
1 TATTTATTATATAAAATTG
59622 TATTTATTATA
1 TATTTATTATA
59633 ATGTACATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.05
17 13 0.59
18 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
TATTTATTATATAAAATTG
Found at i:60634 original size:17 final size:17
Alignment explanation
Indices: 60612--60650 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
60602 TTATCTATTT
60612 TAATAATA-TCTATATAA
1 TAATAATACT-TATATAA
*
60629 TAATAATACTTATTTAA
1 TAATAATACTTATATAA
60646 TAATA
1 TAATA
60651 TAATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATAATACTTATATAA
Found at i:60646 original size:14 final size:16
Alignment explanation
Indices: 60603--60651 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
60593 TTAATTATTT
60603 TATCTAT-TTTAATAA
1 TATCTATATTTAATAA
*
60618 TATCTATATAATAATAA
1 TATCTATAT-TTAATAA
60635 TA-CT-TATTTAATAA
1 TATCTATATTTAATAA
60649 TAT
1 TAT
60652 AATTTATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 8 0.28
15 10 0.34
16 3 0.10
17 8 0.28
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (16 bp):
TATCTATATTTAATAA
Found at i:61189 original size:18 final size:21
Alignment explanation
Indices: 61166--61211 Score: 71
Period size: 18 Copynumber: 2.3 Consensus size: 21
61156 TTATGACTTT
61166 TTAATAATTATT-A-AAA-TA
1 TTAATAATTATTAATAAATTA
61184 TTAATAATTATTAATAAATTA
1 TTAATAATTATTAATAAATTA
61205 TTAATAA
1 TTAATAA
61212 ATAATTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.48
19 1 0.04
20 3 0.12
21 9 0.36
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAATAATTATTAATAAATTA
Found at i:61196 original size:21 final size:21
Alignment explanation
Indices: 61167--61217 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
61157 TATGACTTTT
*
61167 TAATAATTATTAAAATATTAA
1 TAATAATTAATAAAATATTAA
* *
61188 TAATTATTAATAAATTATTAA
1 TAATAATTAATAAAATATTAA
61209 TAAATAATT
1 T-AATAATT
61218 TATATAAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAATAATTAATAAAATATTAA
Found at i:61203 original size:11 final size:11
Alignment explanation
Indices: 61166--61213 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
61156 TTATGACTTT
61166 TTAAT-AATTA
1 TTAATAAATTA
61176 TT-A-AAA-TA
1 TTAATAAATTA
61184 TTAAT-AATTA
1 TTAATAAATTA
61194 TTAATAAATTA
1 TTAATAAATTA
61205 TTAATAAAT
1 TTAATAAAT
61214 AATTTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.12
9 6 0.18
10 9 0.27
11 14 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATAAATTA
Found at i:63290 original size:21 final size:21
Alignment explanation
Indices: 63266--63306 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63256 TATATTTTAT
63266 AAATTATGAAATAA-TTAAAAA
1 AAATTAT-AAATAAGTTAAAAA
*
63287 AAATTATTAATAAGTTAAAA
1 AAATTATAAATAAGTTAAAA
63307 CATAAAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AAATTATAAATAAGTTAAAAA
Found at i:63445 original size:17 final size:17
Alignment explanation
Indices: 63399--63445 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
63389 ATTATTTGAT
63399 TATTAATAATTATATTAA
1 TATTAATAA-TATATTAA
*
63417 T-TTAATTCATATATTAA
1 TATTAA-TAATATATTAA
63434 TATTAATAATAT
1 TATTAATAATAT
63446 TAATAATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTAATAATATATTAA
Found at i:63512 original size:27 final size:28
Alignment explanation
Indices: 63465--63523 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
63455 TTAATTAGAT
*
63465 ATTAGTTTAATAATAATAATATAAAATA
1 ATTAGTTTAATAACAATAATATAAAATA
* *
63493 ATTAGTTT-ATAACATTAATATAATATA
1 ATTAGTTTAATAACAATAATATAAAATA
63520 ATTA
1 ATTA
63524 ATTAACTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (28 bp):
ATTAGTTTAATAACAATAATATAAAATA
Found at i:63966 original size:17 final size:17
Alignment explanation
Indices: 63946--64008 Score: 64
Period size: 17 Copynumber: 3.9 Consensus size: 17
63936 TATGTAGAAA
63946 TTATAATTATTAATTAC
1 TTATAATTATTAATTAC
63963 TTATAA-T-TT-ATTAC
1 TTATAATTATTAATTAC
*
63977 TTATAATTA-TAATATAA
1 TTATAATTATTAAT-TAC
*
63994 TTAT-ATTAATAATTA
1 TTATAATTATTAATTA
64009 ATTTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
14 11 0.28
15 4 0.10
16 9 0.22
17 16 0.40
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (17 bp):
TTATAATTATTAATTAC
Found at i:63977 original size:14 final size:14
Alignment explanation
Indices: 63958--63984 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63948 ATAATTATTA
63958 ATTACTTATAATTT
1 ATTACTTATAATTT
63972 ATTACTTATAATT
1 ATTACTTATAATT
63985 ATAATATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTACTTATAATTT
Found at i:64689 original size:21 final size:21
Alignment explanation
Indices: 64665--64704 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
64655 ATATTTAATA
*
64665 ATAAT-ATTATAAATTTATCTG
1 ATAATAATTA-AAATATATCTG
64686 ATAATAATTAAAATATATC
1 ATAATAATTAAAATATATC
64705 GTAATCATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (21 bp):
ATAATAATTAAAATATATCTG
Found at i:64847 original size:23 final size:22
Alignment explanation
Indices: 64821--64868 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
64811 ATAGTATTAA
*
64821 ATTTAATAAATTATTTAATTATT
1 ATTTAATAAATTATAT-ATTATT
*
64844 ATTTAATAGATTATATATTATT
1 ATTTAATAAATTATATATTATT
64866 ATT
1 ATT
64869 ATTCATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTTAATAAATTATATATTATT
Found at i:65835 original size:30 final size:30
Alignment explanation
Indices: 65801--65903 Score: 83
Period size: 30 Copynumber: 3.5 Consensus size: 30
65791 CTATTTGGGG
65801 AATTTAATTAAATTTAAATTATAATAATTT
1 AATTTAATTAAATTTAAATTATAATAATTT
*
65831 AATTTCATTAAATATT-AATTA-AAT--TTT
1 AATTTAATTAAAT-TTAAATTATAATAATTT
* ** * *
65858 TATAAAAATGAATTTAAGA-TATAA-AATTT
1 AATTTAATTAAATTTAA-ATTATAATAATTT
65887 AATTATAATTAAATTTA
1 AATT-TAATTAAATTTA
65904 TTAATTTAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
26 2 0.04
27 13 0.24
28 3 0.06
29 8 0.15
30 26 0.48
31 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (30 bp):
AATTTAATTAAATTTAAATTATAATAATTT
Found at i:65925 original size:15 final size:15
Alignment explanation
Indices: 65868--65930 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 15
65858 TATAAAAATG
* *
65868 AATTTAAGATA-TAA
1 AATTTAATATATTTA
*
65882 AATTTAATTATAATTA
1 AATTTAA-TATATTTA
*
65898 AATTTATTA-ATTTA
1 AATTTAATATATTTA
*
65912 AATTTAAAATATTTA
1 AATTTAATATATTTA
65927 AATT
1 AATT
65931 AAATGAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
14 18 0.45
15 14 0.35
16 8 0.20
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
AATTTAATATATTTA
Found at i:66497 original size:23 final size:23
Alignment explanation
Indices: 66454--66497 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66444 AATAATAATC
*
66454 TAATTATTAATTATATAATATAA
1 TAATTATTAATAATATAATATAA
*
66477 TAATT-TTAATAAGTATTATAT
1 TAATTATTAATAA-TATAATAT
66498 CAGAGTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TAATTATTAATAATATAATATAA
Found at i:66800 original size:23 final size:22
Alignment explanation
Indices: 66770--66828 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
66760 TGGTTTTGTA
66770 ATATTAATTTATAATAAAACTATT
1 ATATTAATTTATAATAAAA-T-TT
66794 A-ATTAATTTATCAAATAAAATTT
1 ATATTAATTTAT--AATAAAATTT
66817 ATATT-ATTTATA
1 ATATTAATTTATA
66829 CTAAGAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
21 1 0.03
23 19 0.59
24 5 0.16
25 7 0.22
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTAATTTATAATAAAATTT
Found at i:66946 original size:21 final size:22
Alignment explanation
Indices: 66920--66978 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
66910 TTCATTGATG
66920 ATTTAATTAATAAT-TTTATA-A
1 ATTTAA-TAATAATATTTATATA
*
66941 ATTTAATAATTATATTTATATA
1 ATTTAATAATAATATTTATATA
66963 A-TTAATATTATAATAT
1 ATTTAATA--ATAATAT
66979 GAATAACTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 6 0.19
21 18 0.56
22 2 0.06
23 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTAATAATAATATTTATATA
Found at i:67308 original size:23 final size:22
Alignment explanation
Indices: 67268--67316 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
67258 AATTAATAGT
67268 TATTTATAGTATTACTTATATGA
1 TATTTATAGTATTACTTA-ATGA
* *
67291 TATTTATA-TATATGCTTAATTA
1 TATTTATAGTAT-TACTTAATGA
67313 TATT
1 TATT
67317 AATTAATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (22 bp):
TATTTATAGTATTACTTAATGA
Found at i:69946 original size:15 final size:14
Alignment explanation
Indices: 69926--69983 Score: 52
Period size: 16 Copynumber: 4.2 Consensus size: 14
69916 TAATTGTTCA
69926 AATATATAATATTAT
1 AATATATAA-ATTAT
69941 -A-ATATAAA-TA-
1 AATATATAAATTAT
*
69951 ATTATATAAATTAT
1 AATATATAAATTAT
69965 AATTATATTAAATTAT
1 AA-TATA-TAAATTAT
69981 AAT
1 AAT
69984 TAATTTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
11 2 0.06
12 8 0.23
13 8 0.23
14 2 0.06
15 5 0.14
16 10 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATATATAAATTAT
Found at i:69978 original size:16 final size:15
Alignment explanation
Indices: 69948--69985 Score: 67
Period size: 16 Copynumber: 2.5 Consensus size: 15
69938 TATAATATAA
69948 ATAATTATATAAATT
1 ATAATTATATAAATT
69963 ATAATTATATTAAATT
1 ATAATTATA-TAAATT
69979 ATAATTA
1 ATAATTA
69986 ATTTAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTATATAAATT
Found at i:69991 original size:16 final size:15
Alignment explanation
Indices: 69948--69992 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
69938 TATAATATAA
*
69948 ATAATTATATAAATT
1 ATAATTATTTAAATT
69963 ATAATTATATTAAATT
1 ATAATTAT-TTAAATT
69979 ATAATTAATTTAAA
1 ATAATT-ATTTAAA
69993 AATTGTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.30
16 17 0.63
17 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTATTTAAATT
Found at i:70214 original size:27 final size:25
Alignment explanation
Indices: 70162--70218 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
70152 ACTTATTCAT
*
70162 TTATAATTAAATAAATTATAATTTA
1 TTATAATTAAATAAATAATAATTTA
70187 TTATAATTAAAATCAAATAATCAA-TTA
1 TTATAATT-AAAT-AAATAAT-AATTTA
70214 TTATA
1 TTATA
70219 TATATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 8 0.29
26 4 0.14
27 14 0.50
28 2 0.07
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (25 bp):
TTATAATTAAATAAATAATAATTTA
Found at i:70272 original size:11 final size:11
Alignment explanation
Indices: 70238--70272 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
70228 ATTATAAATA
70238 TTAATAATTATT
1 TTAATAA-TATT
70250 TTAATGAATATT
1 TTAAT-AATATT
70262 TTAATAATATT
1 TTAATAATATT
70273 ATTATTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.27
12 14 0.64
13 2 0.09
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (11 bp):
TTAATAATATT
Found at i:70460 original size:22 final size:21
Alignment explanation
Indices: 70427--70468 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
70417 CTTTTAGTTA
70427 TATTCAAATAATACTATAATAT
1 TATTCAAATAATAC-ATAATAT
70449 TATT-AAATTAATACATAATA
1 TATTCAAA-TAATACATAATA
70469 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTCAAATAATACATAATAT
Found at i:70701 original size:22 final size:22
Alignment explanation
Indices: 70659--70701 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
70649 TTAACTATTA
* *
70659 TTTAATTTATATTTAATTAAAG
1 TTTAATTTATATATAACTAAAG
70681 TTTAA-TTATTATATAACTAAA
1 TTTAATTTA-TATATAACTAAA
70702 ATTCAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTAATTTATATATAACTAAAG
Found at i:71109 original size:17 final size:18
Alignment explanation
Indices: 71081--71115 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
71071 ATTAATATTT
71081 ATTAATTTAAATTAATTA
1 ATTAATTTAAATTAATTA
71099 ATTAA-TTAAATTAATTA
1 ATTAATTTAAATTAATTA
71116 TATACAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTAAATTAATTA
Found at i:71466 original size:30 final size:33
Alignment explanation
Indices: 71422--71484 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
71412 ATAATATATC
71422 AATATTAAAATAA-TT-A-CAATAATATTTAAT
1 AATATTAAAATAATTTAATCAATAATATTTAAT
** *
71452 AATATTAATTTAATTTAATTAATAATATTTAAT
1 AATATTAAAATAATTTAATCAATAATATTTAAT
71485 CTTCATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 11 0.41
31 2 0.07
32 1 0.04
33 13 0.48
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (33 bp):
AATATTAAAATAATTTAATCAATAATATTTAAT
Found at i:71467 original size:19 final size:19
Alignment explanation
Indices: 71445--71484 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
71435 TTACAATAAT
*
71445 ATTTAA-TAATATTAATTTA
1 ATTTAATTAATAAT-ATTTA
71464 ATTTAATTAATAATATTTA
1 ATTTAATTAATAATATTTA
71483 AT
1 AT
71485 CTTCATTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTAATTAATAATATTTA
Found at i:71601 original size:19 final size:19
Alignment explanation
Indices: 71573--71613 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
71563 ATAATGTTCA
* *
71573 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
71592 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
71611 AAA
1 AAA
71614 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:71736 original size:17 final size:19
Alignment explanation
Indices: 71714--71758 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 19
71704 TTTATTCTAT
71714 TAATTATCTATTT-TAA-A
1 TAATTATCTATTTATAATA
71731 TAATTAAT-TATTTGATAATA
1 TAATT-ATCTATTT-ATAATA
71751 TAATTATC
1 TAATTATC
71759 AAATATTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 10 0.43
18 2 0.09
19 5 0.22
20 6 0.26
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATTATCTATTTATAATA
Found at i:72453 original size:165 final size:166
Alignment explanation
Indices: 72274--72584 Score: 407
Period size: 166 Copynumber: 1.9 Consensus size: 166
72264 AAGTTTACCA
* ** *
72274 AACAAGTTCAAATAG-TATGACTAT-TTGAATAATTATCTACTTC-AAATAATTTTAGCATTTTG
1 AACAAGTTCAAATAGTTATGACTATCTT-AACAATTATCTACTTCAAAAT-ATTACAACATTTTG
* * * *
72336 TTTTGTAATAAAACAATTGTTTCAATTCATGT-TAGCTTATTTGAAACAAAGTAATACT-AATTT
64 TTTTGTAATAAAACAATTGGTTCAATTCAT-TCAAGCTTATTTCAAACAAAATAATA-TAAATTT
72399 ATTAATATTCCAAAAATTAAAAAAATAAATTTGTTTATTG
127 ATTAATATTCCAAAAATTAAAAAAATAAATTTGTTTATTG
* *
72439 AACAAGTTCAAATAGTTATGACTATCTTAACAATTATCTATTTCAAAATATTACAACCTTTTGTT
1 AACAAGTTCAAATAGTTATGACTATCTTAACAATTATCTACTTCAAAATATTACAACATTTTGTT
* * * *
72504 TTGTCATAAAACAATTGGTTCGATTCATTCAAGCTTATTTCCAATAAAATAATATAAATTTATTA
66 TTGTAATAAAACAATTGGTTCAATTCATTCAAGCTTATTTCAAACAAAATAATATAAATTTATTA
* *
72569 ATGTTTCAAAAATTAA
131 ATATTCCAAAAATTAA
72585 TAAGTAAAAA
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
165 17 0.14
166 102 0.82
167 6 0.05
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (166 bp):
AACAAGTTCAAATAGTTATGACTATCTTAACAATTATCTACTTCAAAATATTACAACATTTTGTT
TTGTAATAAAACAATTGGTTCAATTCATTCAAGCTTATTTCAAACAAAATAATATAAATTTATTA
ATATTCCAAAAATTAAAAAAATAAATTTGTTTATTG
Found at i:72973 original size:19 final size:19
Alignment explanation
Indices: 72951--72991 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
72941 ATAATTTTCA
* *
72951 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
72970 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
72989 AAA
1 AAA
72992 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:73366 original size:19 final size:20
Alignment explanation
Indices: 73334--73372 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
73324 CTATTTAGTA
*
73334 TTATAAAAGCTTATA-ATAT
1 TTATAAAAGATTATATATAT
*
73353 TTATAAAATATTATATATAT
1 TTATAAAAGATTATATATAT
73373 AATTTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (20 bp):
TTATAAAAGATTATATATAT
Found at i:75765 original size:17 final size:17
Alignment explanation
Indices: 75719--75766 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
75709 TAATTTATAT
*
75719 ATAATTATAAATAATTTC
1 ATAATTATAAA-AATTTA
* *
75737 A-AATTTTCAAAATTTA
1 ATAATTATAAAAATTTA
75753 ATAATTATAAAAAT
1 ATAATTATAAAAAT
75767 ATTATTTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
16 6 0.25
17 17 0.71
18 1 0.04
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATTATAAAAATTTA
Found at i:76040 original size:13 final size:13
Alignment explanation
Indices: 76022--76065 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
76012 CTAATCTGTA
76022 TATTAATATAAAT
1 TATTAATATAAAT
*
76035 TATTAATATATAT
1 TATTAATATAAAT
*
76048 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
76063 TAT
1 TAT
76066 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:76134 original size:31 final size:31
Alignment explanation
Indices: 76099--76157 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
76089 AGATAAAATA
76099 TAATAGTT-ATATTTTATT-AATATTAAATAAT
1 TAATA-TTAATATTTTATTAAATA-TAAATAAT
76130 TAATATTAATATTTTATTAAATATAAAT
1 TAATATTAATATTTTATTAAATATAAAT
76158 TATTTACTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (31 bp):
TAATATTAATATTTTATTAAATATAAATAAT
Found at i:77077 original size:19 final size:18
Alignment explanation
Indices: 77031--77080 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
77021 AATTTTATTA
77031 AAATTATAATTATTTTAAT
1 AAATTATAA-TATTTTAAT
* *
77050 AAATAATAATATTATTTAT
1 AAATTATAATATT-TTAAT
*
77069 ATATTATAATAT
1 AAATTATAATAT
77081 ATAATATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTATAATATTTTAAT
Found at i:77084 original size:26 final size:25
Alignment explanation
Indices: 77039--77108 Score: 94
Period size: 26 Copynumber: 2.9 Consensus size: 25
77029 TAAAATTATA
77039 ATTATTTTA-A-TA-AATA-ATAAT
1 ATTATTTTATATTATAATATATAAT
77060 ATTATTTATATATTATAATATATAAT
1 ATTATTT-TATATTATAATATATAAT
77086 ATTATTTTATATTATAATCATAT
1 ATTATTTTATATTATAAT-ATAT
77109 TAGTAGTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.16
22 2 0.05
23 1 0.02
24 2 0.05
25 15 0.35
26 16 0.37
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
ATTATTTTATATTATAATATATAAT
Found at i:77539 original size:24 final size:22
Alignment explanation
Indices: 77497--77552 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
77487 TAATTATATT
*
77497 TATAAATTACTATAAAATAATTAA
1 TATAAATTA-TATAAAATAAAT-A
*
77521 TATAAATTATATTATAATAAATA
1 TATAAATTATA-TAAAATAAATA
77544 T-TAAATTAT
1 TATAAATTAT
77553 CCTTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 8 0.28
23 4 0.14
24 17 0.59
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAATTATATAAAATAAATA
Found at i:77744 original size:15 final size:14
Alignment explanation
Indices: 77724--77763 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
77714 TATTAATAAT
77724 TAATTATAATAACA
1 TAATTATAATAACA
*
77738 GTAATTATAATAATA
1 -TAATTATAATAACA
77753 T-ATTATAATAA
1 TAATTATAATAA
77764 TTATATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 13 0.54
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (14 bp):
TAATTATAATAACA
Found at i:77965 original size:13 final size:14
Alignment explanation
Indices: 77939--77973 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
77929 AATTTTAAAT
77939 AATATATAAATTTA
1 AATATATAAATTTA
*
77953 AAT-TATAATTTTA
1 AATATATAAATTTA
77966 AATATATA
1 AATATATA
77974 TTATTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATATATAAATTTA
Found at i:78423 original size:25 final size:25
Alignment explanation
Indices: 78395--78442 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
78385 ACTTAAAATA
* *
78395 AATAGTATAATTAATTATTTATAAT
1 AATAATATAATTAAATATTTATAAT
*
78420 AATAATTTAATTAAATATTTATA
1 AATAATATAATTAAATATTTATA
78443 TCTTAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (25 bp):
AATAATATAATTAAATATTTATAAT
Found at i:78588 original size:26 final size:29
Alignment explanation
Indices: 78535--78596 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 29
78525 TATTAATGTT
78535 TAAATAT-A-TATTAGTTTACAATATTTA
1 TAAATATAATTATTAGTTTACAATATTTA
*
78562 TTAATATAATTATTA-TTTACAA-A-TTA
1 TAAATATAATTATTAGTTTACAATATTTA
78588 TAAATATAA
1 TAAATATAA
78597 GAATTAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 11 0.35
27 7 0.23
28 8 0.26
29 5 0.16
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (29 bp):
TAAATATAATTATTAGTTTACAATATTTA
Found at i:78602 original size:26 final size:29
Alignment explanation
Indices: 78544--78602 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 29
78534 TTAAATATAT
* **
78544 ATTAGTTTACAATATTTATTAATATAATT
1 ATTAGTTTACAATATTTATAAATATAAGA
78573 ATTA-TTTACAA-A-TTATAAATATAAGA
1 ATTAGTTTACAATATTTATAAATATAAGA
78599 ATTA
1 ATTA
78603 AAATATATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 15 0.56
27 1 0.04
28 7 0.26
29 4 0.15
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (29 bp):
ATTAGTTTACAATATTTATAAATATAAGA
Found at i:78769 original size:18 final size:18
Alignment explanation
Indices: 78742--78829 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 18
78732 GTTTAGTATT
*
78742 AATTACATAATTAAATTA
1 AATTATATAATTAAATTA
78760 AATTATATAATTAAAATTTA
1 AATTATATAATT-AAA-TTA
**
78780 TCTTATATAATT-AATT-
1 AATTATATAATTAAATTA
*
78796 AATTAAATTAA-T-AATTA
1 AATTATA-TAATTAAATTA
*
78813 TATTTATATAATTAAAT
1 -AATTATATAATTAAAT
78830 ACTTATTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
16 9 0.16
17 8 0.15
18 19 0.35
19 6 0.11
20 13 0.24
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTATATAATTAAATTA
Found at i:79228 original size:17 final size:17
Alignment explanation
Indices: 79193--79229 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
79183 ATTTATTTAG
*
79193 TATAAATATTAATATAT
1 TATAAATATTAATAAAT
*
79210 TATAAATATTATTAAAT
1 TATAAATATTAATAAAT
79227 TAT
1 TAT
79230 TTTTTATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAAATATTAATAAAT
Found at i:79246 original size:22 final size:22
Alignment explanation
Indices: 79209--79268 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
79199 TATTAATATA
79209 TTATAAATATTATTAAATTATTTT
1 TTAT-AAT-TTATTAAATTATTTT
79233 TTATAATTTATTAAATTATTTT
1 TTATAATTTATTAAATTATTTT
*
79255 AT-TAATTTATTAAA
1 TTATAATTTATTAAA
79269 CTCAATTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
21 12 0.34
22 16 0.46
23 3 0.09
24 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATAATTTATTAAATTATTTT
Found at i:79255 original size:13 final size:13
Alignment explanation
Indices: 79218--79265 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
79208 ATTATAAATA
79218 TTATTAAATTATT
1 TTATTAAATTATT
*
79231 TT-TT--A-TAAT
1 TTATTAAATTATT
79240 TTATTAAATTATT
1 TTATTAAATTATT
*
79253 TTATTAATTTATT
1 TTATTAAATTATT
79266 AAACTCAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
9 5 0.18
10 3 0.11
12 3 0.11
13 17 0.61
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTATTAAATTATT
Found at i:79800 original size:13 final size:11
Alignment explanation
Indices: 79736--79805 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
79726 TTAAATATCA
79736 TATATAAT-AT
1 TATATAATAAT
* * *
79746 TTTATTATTAT
1 TATATAATAAT
* *
79757 TATTTAAGAA-
1 TATATAATAAT
79767 TAT-TAATAAT
1 TATATAATAAT
79777 TATATAATAAT
1 TATATAATAAT
79788 TATATAAATTAAT
1 TATAT-AA-TAAT
79801 TATAT
1 TATAT
79806 TATTAATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
9 5 0.11
10 12 0.26
11 19 0.40
12 2 0.04
13 9 0.19
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (11 bp):
TATATAATAAT
Found at i:79813 original size:16 final size:16
Alignment explanation
Indices: 79751--79830 Score: 56
Period size: 16 Copynumber: 4.8 Consensus size: 16
79741 AATATTTTAT
* *
79751 TATTATTATTTAAGAA
1 TATTATTAATTAATAA
*
79767 TATTAATAATTATATAA
1 TATTATTAATTA-ATAA
*
79784 TAATTATATAAATTAATTA
1 T-ATTAT-T-AATTAATAA
79803 TATTATTAATTTAA-AA
1 TATTATTAA-TTAATAA
*
79819 TA-TACTAATTAA
1 TATTATTAATTAA
79831 ATAACTTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
14 4 0.08
15 5 0.10
16 15 0.29
17 9 0.17
18 9 0.17
19 5 0.10
20 5 0.10
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (16 bp):
TATTATTAATTAATAA
Found at i:80266 original size:12 final size:12
Alignment explanation
Indices: 80229--80274 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
80219 TTAAAAATGA
80229 ATTATTAATAATT
1 ATTATT-ATAATT
80242 ATTAATTA-AATT
1 ATT-ATTATAATT
*
80254 ATTATTATTATT
1 ATTATTATAATT
80266 ATTATTATA
1 ATTATTATA
80275 TGAAATAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 4 0.14
12 18 0.62
13 4 0.14
14 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATTATTATAATT
Found at i:80557 original size:15 final size:15
Alignment explanation
Indices: 80533--80565 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
80523 AATGTTACAA
80533 TATATAAAATAAATT
1 TATATAAAATAAATT
*
80548 TATATTAAATAAATT
1 TATATAAAATAAATT
80563 TAT
1 TAT
80566 TTTATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATAAAATAAATT
Found at i:80611 original size:19 final size:19
Alignment explanation
Indices: 80589--80644 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
80579 CATTAATTAT
80589 TATAAATATATTATAATAA
1 TATAAATATATTATAATAA
* *
80608 TATAATTATTTTATATATAA
1 TATAAATATATTATA-ATAA
*
80628 -AT-AATTTA-TATAATAA
1 TATAAATATATTATAATAA
80644 T
1 T
80645 TTATATTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 3 0.10
19 15 0.50
20 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATAAATATATTATAATAA
Found at i:80627 original size:15 final size:15
Alignment explanation
Indices: 80607--80645 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
80597 TATTATAATA
*
80607 ATATAATTATTTTAT
1 ATATAATTAATTTAT
*
80622 ATATAAATAATTTAT
1 ATATAATTAATTTAT
80637 ATAATAATT
1 AT-ATAATT
80646 TATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTAATTTAT
Found at i:80644 original size:12 final size:13
Alignment explanation
Indices: 80621--80650 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
80611 AATTATTTTA
80621 TATATAAATAATT
1 TATATAAATAATT
80634 TATAT-AATAATT
1 TATATAAATAATT
80646 TATAT
1 TATAT
80651 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:80840 original size:17 final size:16
Alignment explanation
Indices: 80818--80873 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
80808 TTTATTTGAT
80818 AATTTATATATATTATA
1 AATTTATATATA-TATA
*
80835 AATTTATATTTATAT-
1 AATTTATATATATATA
*
80850 AA-TTATAAATAATATA
1 AATTTATATAT-ATATA
80866 TAATTTAT
1 -AATTTAT
80874 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 3 0.09
17 13 0.41
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTATATATATATA
Found at i:80845 original size:31 final size:32
Alignment explanation
Indices: 80804--80873 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
80794 ATAGTAATTA
* * * *
80804 ATAATTTAT-TTGATA-ATTTATATATATTAT
1 ATAATTTATATTTATATAATTATAAATAATAT
80834 A-AATTTATATTTATATAATTATAAATAATAT
1 ATAATTTATATTTATATAATTATAAATAATAT
80865 ATAATTTAT
1 ATAATTTAT
80874 TAATTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.21
30 6 0.18
31 13 0.39
32 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (32 bp):
ATAATTTATATTTATATAATTATAAATAATAT
Found at i:80865 original size:23 final size:23
Alignment explanation
Indices: 80819--80866 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
80809 TTATTTGATA
*
80819 ATTTATATATATTATAAATTTAT
1 ATTTATATATATTATAAATATAT
80842 ATTTATATA-ATTATAAATAATAT
1 ATTTATATATATTATAAAT-ATAT
80865 AT
1 AT
80867 AATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATATATATTATAAATATAT
Found at i:80867 original size:25 final size:23
Alignment explanation
Indices: 80811--80878 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
80801 TTAATAATTT
80811 ATTTGATAATTTATATATATTATAA
1 ATTT-ATAATTTATATA-ATTATAA
80836 ATTTAT-ATTTATATAATTATAA
1 ATTTATAATTTATATAATTATAA
80858 ATAATATATAATTTAT-TAATT
1 AT--T-TATAATTTATATAATT
80879 TTTATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 3 0.08
25 12 0.31
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTATAATTTATATAATTATAA
Found at i:80905 original size:23 final size:24
Alignment explanation
Indices: 80879--80928 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
80869 TTTATTAATT
80879 TTTATTTAA-TTAATAAATATTTG
1 TTTATTTAATTTAATAAATATTTG
* *
80902 TTTATTTAATTTAGTAATTATTTG
1 TTTATTTAATTTAATAAATATTTG
80926 TTT
1 TTT
80929 TAAAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTATTTAATTTAATAAATATTTG
Found at i:82292 original size:18 final size:18
Alignment explanation
Indices: 82269--82324 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
82259 ATTAAATAAA
82269 TATTTA-AATAATAACTAT
1 TATTTATAATAATAA-TAT
82287 TATTTATAA-ATATAATAT
1 TATTTATAATA-ATAATAT
82305 TAATTTATAATAATAA-AT
1 T-ATTTATAATAATAATAT
82323 TA
1 TA
82325 CTAATAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.41
19 18 0.53
20 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTTATAATAATAATAT
Found at i:82310 original size:19 final size:20
Alignment explanation
Indices: 82273--82320 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
82263 AATAAATATT
82273 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
82293 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
82312 T-AATAATAA
1 TAAATAATAA
82321 ATTACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 7 0.27
19 14 0.54
20 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:82337 original size:19 final size:19
Alignment explanation
Indices: 82315--82356 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
82305 TAATTTATAA
82315 TAATAAAT-TACTAATAAAT
1 TAATAAATATACT-ATAAAT
**
82334 TAATATTTATACTATAAAT
1 TAATAAATATACTATAAAT
82353 TAAT
1 TAAT
82357 GACAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAAATATACTATAAAT
Found at i:83204 original size:24 final size:25
Alignment explanation
Indices: 83170--83219 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
83160 AAATTATGAC
* *
83170 AATTTATAATTA-ATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
83194 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
83219 A
1 A
83220 TTATATCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Done.