Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168193.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_43, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 234249
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 5 of 6
Found at i:170262 original size:20 final size:20
Alignment explanation
Indices: 170209--170263 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
170199 CGTTATAGAC
*
170209 TTAATAGTTATAATA--TAA
1 TTAATAATTATAATATTTAA
*
170227 TT-ATAATTCATTATATTTAA
1 TTAATAATT-ATAATATTTAA
170247 TTAATAATTATAATATT
1 TTAATAATTATAATATT
170264 ATTAATTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 5 0.17
18 7 0.23
20 12 0.40
21 6 0.20
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATAATTATAATATTTAA
Found at i:170267 original size:18 final size:18
Alignment explanation
Indices: 170209--170269 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
170199 CGTTATAGAC
* *
170209 TTAATAGTTATAATATAA
1 TTAATAATTATAATATTA
*
170227 TT-ATAATTCATTATATTTAA
1 TTAATAATT-ATAATA-TT-A
170247 TTAATAATTATAATATTA
1 TTAATAATTATAATATTA
170265 TTAAT
1 TTAAT
170270 TTGAATAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.14
18 13 0.37
19 3 0.09
20 8 0.23
21 6 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TTAATAATTATAATATTA
Found at i:170271 original size:27 final size:27
Alignment explanation
Indices: 170223--170284 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
170213 TAGTTATAAT
170223 ATAATTATAATTCATTATATTT-AATTA
1 ATAATTATAATTCATTATATTTGAA-TA
*
170250 ATAATTATAATATTATTA-ATTTGAATA
1 ATAATTATAAT-TCATTATATTTGAATA
170277 ATTAATTA
1 A-TAATTA
170285 ATAAAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 18 0.58
28 13 0.42
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
ATAATTATAATTCATTATATTTGAATA
Found at i:171483 original size:63 final size:63
Alignment explanation
Indices: 171411--171865 Score: 411
Period size: 63 Copynumber: 7.2 Consensus size: 63
171401 TATTAGCAAG
* * * * * * *
171411 TTCAGAACAAGTTTCATCTTCCATCATTTGGTCACCATTTATAGGCTTCTTAGCAATAGCCAT
1 TTCAAAACAAATTTCATCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * * * * * ** *
171474 TTCACAACAAATTTCATCCTTC-ATCATTTGGTCACCACTCACAGACTTGTTAGCACCATTCGT
1 TTCAAAACAAATTTCAT-CTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * *
171537 TTCAAAACAAATTCTC-TCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAGCTAT
1 TTCAAAACAAATT-TCATCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * * * * * * * *
171600 TCCAAAACAAATTTTATTTTTTTGTCACTTGATCACCACACATAAGCTTCTCAGCACTAGCCAT
1 TTCAAAACAAATTTCA-TCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * * * *
171664 TCCAAAACAAATTTCATCTT-TGATCATTTGGTCACCACTTATAGGCTTCTTAGCATTAGCAAT
1 TTCAAAACAAATTTCATCTTCT-ATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * * *
171727 TTC-AAACAAA-TTCTGTCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAACCAT
1 TTCAAAACAAATTTC-ATCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
* * * * *
171789 TCCAGAACAAA-TTCTATCTTCTATCATTTGGTCACCATTCATAGGCTTCTCAACACTAGCTA-
1 TTCAAAACAAATTTC-ATCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
*
171851 TTCTAGAACAAATTT
1 TTC-AAAACAAATTT
171866 TGTCCATTGC
Statistics
Matches: 319, Mismatches: 62, Indels: 21
0.79 0.15 0.05
Matches are distributed among these distances:
61 3 0.01
62 55 0.17
63 197 0.62
64 64 0.20
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (63 bp):
TTCAAAACAAATTTCATCTTCTATCATTTGGTCACCACTCATAGGCTTCTCAGCACTAGCCAT
Found at i:171783 original size:125 final size:124
Alignment explanation
Indices: 171416--171838 Score: 426
Period size: 127 Copynumber: 3.4 Consensus size: 124
171406 GCAAGTTCAG
* * * *
171416 AACAAGTTTCATCTTCCATCATTTGGTCACCATTTATAGGCTTCTTAGCAATAGCCATTTCACAA
1 AACAAATTTCATCTTCTATCATTTGGTCACCACTTATAGGCTTCTTAGCAATAGCAATTTCA-AA
* * * * * * ** * *
171481 CAAATTTCATCCTTC-ATCATTTGGTCACCACTCA-CAGACTTGTTAGCACCATTCGTTTCAA
65 CAAA-TTC-TTCTTCTATCACTTGGTCACCACTCATAAG-CTTCTCAGCACTAACCATTCCAA
* * * * * * *
171542 AACAAATTCTC-TCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAGCTATTCCAAA
1 AACAAATT-TCATCTTCTATCATTTGGTCACCACTTATAGGCTTCTTAGCAATAGCAATTTC-AA
* * * * * * *
171606 ACAAATTTTATTTTTTTGTCACTTGATCACCACACATAAGCTTCTCAGCACTAGCCATTCCAA
64 ACAAA--TTCTTCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAACCATTCCAA
*
171669 AACAAATTTCATCTT-TGATCATTTGGTCACCACTTATAGGCTTCTTAGCATTAGCAATTTCAAA
1 AACAAATTTCATCTTCT-ATCATTTGGTCACCACTTATAGGCTTCTTAGCAATAGCAATTTCAAA
*
171733 CAAATTCTGTCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAACCATTCCAG
65 CAAATTCT-TCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAACCATTCCAA
171794 AACAAA-TTCTATCTTCTATCATTTGGTCACCA-TTCATAGGCTTCT
1 AACAAATTTC-ATCTTCTATCATTTGGTCACCACTT-ATAGGCTTCT
171839 CAACACTAGC
Statistics
Matches: 245, Mismatches: 41, Indels: 23
0.79 0.13 0.07
Matches are distributed among these distances:
124 8 0.03
125 81 0.33
126 68 0.28
127 86 0.35
128 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.35
Consensus pattern (124 bp):
AACAAATTTCATCTTCTATCATTTGGTCACCACTTATAGGCTTCTTAGCAATAGCAATTTCAAAC
AAATTCTTCTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAACCATTCCAA
Found at i:172613 original size:13 final size:14
Alignment explanation
Indices: 172595--172623 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
172585 AATCTTTCAT
172595 TTTTTCTTTTT-TC
1 TTTTTCTTTTTCTC
172608 TTTTTCTTTTTCTC
1 TTTTTCTTTTTCTC
172622 TT
1 TT
172624 CTCATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTCTTTTTCTC
Found at i:174147 original size:19 final size:19
Alignment explanation
Indices: 174123--174173 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
174113 CCATATATTA
*
174123 ATTATTAATT-TTATTATAT
1 ATTATTAATTATGA-TATAT
*
174142 ATTATTTATTATGATATAT
1 ATTATTAATTATGATATAT
174161 AGTTATTAATTAT
1 A-TTATTAATTAT
174174 TAAATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
ATTATTAATTATGATATAT
Found at i:174355 original size:21 final size:22
Alignment explanation
Indices: 174332--174375 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 22
174322 ATTGTTCAAA
174332 TATATAATATTATAATATAAATAT
1 TATATAA-ATTATAAT-TAAATAT
174356 TATATAAATTATAATTAAAT
1 TATATAAATTATAATTAAAT
174376 TAAATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 5 0.25
23 8 0.40
24 7 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TATATAAATTATAATTAAATAT
Found at i:174356 original size:14 final size:15
Alignment explanation
Indices: 174330--174359 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
174320 ATATTGTTCA
174330 AATATATAATATTAT
1 AATATATAATATTAT
174345 AATATA-AATATTAT
1 AATATATAATATTAT
174359 A
1 A
174360 TAAATTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AATATATAATATTAT
Found at i:174379 original size:16 final size:16
Alignment explanation
Indices: 174360--174395 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
174350 AAATATTATA
174360 TAAATTATAATTAAAT
1 TAAATTATAATTAAAT
*
174376 TAAATTATAATTAATT
1 TAAATTATAATTAAAT
174392 TAAA
1 TAAA
174396 AATTATCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATTATAATTAAAT
Found at i:174389 original size:11 final size:12
Alignment explanation
Indices: 174333--174377 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
174323 TTGTTCAAAT
174333 ATATAATATTATA
1 ATATAA-ATTATA
*
174346 ATATAAA-TATT
1 ATATAAATTATA
174357 ATATAAATTATA
1 ATATAAATTATA
174369 AT-TAAATTA
1 ATATAAATTA
174378 AATTATAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 17 0.59
12 6 0.21
13 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATATAAATTATA
Found at i:174414 original size:43 final size:43
Alignment explanation
Indices: 174335--174484 Score: 98
Period size: 43 Copynumber: 3.5 Consensus size: 43
174325 GTTCAAATAT
* *
174335 ATAATATTATAATATAAATATTATATAAATTATAA-TTA-AATTAA
1 ATAATA-T-TAATTTAAAAATTATATAAATTATAATTTACAATT-A
* * * *
174379 ATTATAATTAATTTAAAAATTATCTTAATTGTAATTTACAATTA
1 ATAAT-ATTAATTTAAAAATTATATAAATTATAATTTACAATTA
* * *
174423 ATAATATTAATTTTATAA-TAT-T--ATTATAATTATTACATATTT
1 ATAATATTAATTTAAAAATTATATAAATTATAA-T-TTACA-ATTA
174465 ATAAT-TTAATTTAAATAATT
1 ATAATATTAATTTAAA-AATT
174485 TTAAAAAATA
Statistics
Matches: 85, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
39 6 0.07
40 1 0.01
41 14 0.16
42 13 0.15
43 33 0.39
44 13 0.15
45 5 0.06
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (43 bp):
ATAATATTAATTTAAAAATTATATAAATTATAATTTACAATTA
Found at i:174440 original size:14 final size:14
Alignment explanation
Indices: 174423--174476 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
174413 TTTACAATTA
174423 ATAATATTAATTTT
1 ATAATATTAATTTT
174437 ATAATATT-A--TT
1 ATAATATTAATTTT
174448 ATAATTATTACATATTT
1 ATAA-TATTA-AT-TTT
174465 ATAAT-TTAATTT
1 ATAATATTAATTT
174477 AAATAATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 13
0.72 0.00 0.28
Matches are distributed among these distances:
11 6 0.18
12 4 0.12
13 3 0.09
14 11 0.32
15 3 0.09
16 1 0.03
17 6 0.18
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
ATAATATTAATTTT
Found at i:174509 original size:14 final size:14
Alignment explanation
Indices: 174469--174509 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
174459 ATATTTATAA
*
174469 TTTAATTTAAATAAT
1 TTTAATATAAAT-AT
174484 TTTAA-A-AAATAT
1 TTTAATATAAATAT
174496 TTTAATATAAATAT
1 TTTAATATAAATAT
174510 AGTGTACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
12 7 0.30
13 5 0.22
14 6 0.26
15 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTAATATAAATAT
Found at i:174863 original size:22 final size:22
Alignment explanation
Indices: 174830--174872 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
174820 ACTTTAGTTA
*
174830 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
174852 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
174873 ATTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:175137 original size:16 final size:16
Alignment explanation
Indices: 175113--175152 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
175103 ATATTTAAAT
175113 GTTTAAATAATAATATTA
1 GTTT-AATAATAAT-TTA
175131 -TTTAATAATAATTTA
1 GTTTAATAATAATTTA
175146 GTTTAAT
1 GTTTAAT
175153 TATTATCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.14
16 15 0.71
17 3 0.14
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
GTTTAATAATAATTTA
Found at i:175991 original size:19 final size:19
Alignment explanation
Indices: 175969--176009 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
175959 ATAATTTTCA
* *
175969 AAATATTATTAACTATTTT
1 AAATAATATTAACTATTAT
*
175988 AAATAATATTTACTATTAT
1 AAATAATATTAACTATTAT
176007 AAA
1 AAA
176010 CAACAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATATTAACTATTAT
Found at i:176934 original size:182 final size:179
Alignment explanation
Indices: 176468--177047 Score: 559
Period size: 182 Copynumber: 3.2 Consensus size: 179
176458 TTAATAAGAC
* * * *
176468 AATTAATAAGTAAAAG-ATTTAAAAAATAAATCTATTTATCAAATAAATTCAAATCGTTATGACT
1 AATTAATAAGTAAAAGAATTTAAAAAATAAATTTATTTATCAAACAAGTTCAAATAGTTATGACT
* * * * * * * * *
176532 ATCTGAATAATTATTTATTTCAAATTCTTATGATTTTTTTGTTTTGTCATAAAATAATTGTTTCC
66 ATCTTAATAATTATCTATTTCAAAATATTA-CAATATTTTGTTTTGTCATAAAAAAATTGTTTCA
* * * * * * * *
176597 GTCCA-TACATGCTTATTCGGATTAAAATAATTTTGATTTATTAATATTTCAAT
130 ATTCATTA-A-GCTTATTTGAAATAAAATAA-TATAATTTATTAATA-TTCAAA
* * * * *
176650 AATTAATAAGTAAAAGATTTTTAAAAAAT-AA---GTTTACCAAACAAGTTTAAATAGTCATGAC
1 AATTAATAAGTAAAAGA-ATTTAAAAAATAAATTTATTTATCAAACAAGTTCAAATAGTTATGAC
* ** * * *
176711 TAT-TTGAATAATTATCTACTTC-AAATCATTGTAACATTTTGTTTTGTAATAAAAAAATAGTTT
65 TATCTT-AATAATTATCTATTTCAAAAT-ATTACAATATTTTGTTTTGTCATAAAAAAATTGTTT
*
176774 CAATTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCAAAA
128 CAATTCAT-TAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTC-AAA
* * * *
176829 AATTAAAAAGTAAGAGAATTAAAAAAATAAATTTATTTATCGAACAAGTTCAAATAGTTATGACT
1 AATTAATAAGTAAAAGAATTTAAAAAATAAATTTATTTATCAAACAAGTTCAAATAGTTATGACT
* * * *
176894 ATCTTAATAATTATCTGTTTCAAAATATTACAATATTTTGTTTTGTCATAAAACAATTGGTTCTA
66 ATCTTAATAATTATCTATTTCAAAATATTACAATATTTTGTTTTGTCATAAAAAAATTGTTTCAA
* *
176959 TTCATTCAAGCTTATTTCAAATAAAATAATATAACTTTATTAATGTTCCAAA
131 TTCATT-AAGCTTATTTGAAATAAAATAATATAA-TTTATTAATATT-CAAA
* *
177011 AATTAATAAGT-AAA-AATTTTAAAAACAAATTTATTTA
1 AATTAATAAGTAAAAGAATTTAAAAAATAAATTTATTTA
177048 AAAATTAATG
Statistics
Matches: 323, Mismatches: 58, Indels: 36
0.77 0.14 0.09
Matches are distributed among these distances:
178 13 0.04
179 81 0.25
180 63 0.20
181 7 0.02
182 140 0.43
183 9 0.03
184 10 0.03
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (179 bp):
AATTAATAAGTAAAAGAATTTAAAAAATAAATTTATTTATCAAACAAGTTCAAATAGTTATGACT
ATCTTAATAATTATCTATTTCAAAATATTACAATATTTTGTTTTGTCATAAAAAAATTGTTTCAA
TTCATTAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCAAA
Found at i:178075 original size:179 final size:178
Alignment explanation
Indices: 177603--178178 Score: 526
Period size: 181 Copynumber: 3.2 Consensus size: 178
177593 TAATTTTTAA
* * *
177603 ATAAATTTA-TTTTTAAAAT-TTTTACTTATTAATTTTTGAAACATTAATAAATTTATATTATTT
1 ATAAACTTATTTTTTAAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTT
* * *
177666 T-ATTTGAAACAAGCTTGAATGAATA-AAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATG
66 TAATTCG-AATAAGCTAGAATGAATAGAAA-CAATTGTTTTATGACAAAACAAAAGGTTGTAATG
* *
177729 CTTTGAAATAGATAATTATTAAGATAGTCATAATTATTTGAACTTGTTCG
129 ATTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCG
* * * * * * *
177779 ATAAACATATTTATTTTTTTAATTC-TCTACTTTTTAATTTTTGAGATATTAATAAATTAGTATC
1 ATAAAC----TTATTTTTTAAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATT
* * * * * * *
177843 ATTTTATTTCAAATAAGCTA-ACATGAATTGCAACAATTGTTTTATTACAAAACAATATGTT-TC
62 ATTTTAATTCGAATAAGCTAGA-ATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTGT-
* * * * *
177906 AATGATTTGAAGTAGATAATTATTCAA-ATATTTATGACTATTTGAACTTGTTTG
125 AATGATTTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCG
* * *
177960 GTAAACTTATTTTTTAAAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATT
1 ATAAACTTATTTTTT-AAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATT
* * * * * * ** *
178025 TTAATCCGAATAAGCTCGTATGGACAGAAACAATTATTTTATGACAAAACAAAAAATTCATAA-G
65 TTAATTCGAATAAGCTAGAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTT-GTAATG
* * *
178089 AATTTGAAATAAATAATTATTCAGATAGTCATAA-TGATTTGAATTTGTTCG
129 -ATTTGAAATAGATAATTATTAAGATAGTCATAACT-ATTTGAACTTGTTCG
* *
178140 ATAAATAGATTTATTTTTT-AAATATTTTACTTATTAATT
1 AT--A-A-ACTTATTTTTTAAAATCTTTTACTTATTAATT
178179 ATCTTATTAA
Statistics
Matches: 315, Mismatches: 62, Indels: 40
0.76 0.15 0.10
Matches are distributed among these distances:
176 5 0.02
177 9 0.03
178 4 0.01
179 81 0.26
180 46 0.15
181 133 0.42
182 26 0.08
183 1 0.00
184 10 0.03
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (178 bp):
ATAAACTTATTTTTTAAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTT
TAATTCGAATAAGCTAGAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTGTAATGAT
TTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCG
Found at i:178246 original size:9 final size:9
Alignment explanation
Indices: 178226--178254 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
178216 TATAACTGAA
178226 AATTAA-AT
1 AATTAATAT
178234 AATTAATAT
1 AATTAATAT
178243 AATTAATAT
1 AATTAATAT
178252 AAT
1 AAT
178255 ATCAAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTAATAT
Found at i:178458 original size:15 final size:15
Alignment explanation
Indices: 178438--178467 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
178428 CCTTTTGTAA
*
178438 TATTATAATTATAAT
1 TATTATAACTATAAT
178453 TATTATAACTATAAT
1 TATTATAACTATAAT
178468 AGATTAGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTATAACTATAAT
Found at i:178841 original size:19 final size:21
Alignment explanation
Indices: 178820--178876 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 21
178810 TTATTAACAA
178820 TTATTATTATTAT-ATATT-A
1 TTATTATTATTATAATATTGA
* *
178839 TTATAATTATTGTAATATTGA
1 TTATTATTATTATAATATTGA
*
178860 -TA-TATTATTGTAATATT
1 TTATTATTATTATAATATT
178877 ATATGTTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 25 0.76
20 7 0.21
21 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (21 bp):
TTATTATTATTATAATATTGA
Found at i:178886 original size:19 final size:19
Alignment explanation
Indices: 178844--178880 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
178834 TATTATTATA
178844 ATTATTGTAATATTGATAT
1 ATTATTGTAATATTGATAT
178863 ATTATTGTAATATT-ATAT
1 ATTATTGTAATATTGATAT
178881 GTTTATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
ATTATTGTAATATTGATAT
Found at i:179087 original size:4 final size:4
Alignment explanation
Indices: 179080--179104 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
179070 GAATTATATA
179080 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
179105 TAAAATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:179189 original size:14 final size:14
Alignment explanation
Indices: 179172--179217 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
179162 ATTTATATTA
179172 ATTATAAATTTAAT
1 ATTATAAATTTAAT
179186 ATTA-ATAATTTAAT
1 ATTATA-AATTTAAT
179200 ATT-TAATATTTAAT
1 ATTATAA-ATTTAAT
179214 -TTAT
1 ATTAT
179218 TATTACCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 4 0.14
14 24 0.86
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
ATTATAAATTTAAT
Found at i:179203 original size:21 final size:19
Alignment explanation
Indices: 179169--179221 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
179159 TTAATTTATA
179169 TTAATTATAA-ATTTAATAT
1 TTAATT-TAATATTTAATAT
179188 TAATAATTTAATATTTAATAT
1 T--TAATTTAATATTTAATAT
*
179209 TTAATTTATTATT
1 TTAATTTAATATT
179222 ACCCATTACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 12 0.40
20 3 0.10
21 15 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATTTAATATTTAATAT
Found at i:179205 original size:7 final size:7
Alignment explanation
Indices: 179179--179213 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
179169 TTAATTATAA
179179 ATTTAAT
1 ATTTAAT
179186 A-TTAAT
1 ATTTAAT
179192 AATTTAAT
1 -ATTTAAT
179200 ATTTAAT
1 ATTTAAT
179207 ATTTAAT
1 ATTTAAT
179214 TTATTATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 5 0.19
7 16 0.62
8 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
ATTTAAT
Found at i:179365 original size:9 final size:9
Alignment explanation
Indices: 179351--179375 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
179341 ATAATAATAA
179351 AATTATAGT
1 AATTATAGT
179360 AATTATAGT
1 AATTATAGT
179369 AATTATA
1 AATTATA
179376 CAAATTAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (9 bp):
AATTATAGT
Found at i:179877 original size:55 final size:55
Alignment explanation
Indices: 179767--179887 Score: 156
Period size: 55 Copynumber: 2.2 Consensus size: 55
179757 CCTTTTCTTT
* ** *
179767 TATTTTATTTCTTTGTTGGATTTCTAAATTTTCCACCATTTGGTTCAATTTAAAAA
1 TATTTTCTTT-TTTGTTGGATTTCTAAATTTTCCACCATTTGGGCCAATTCAAAAA
*
179823 TATTTTCTTTTTT-TTGGAATTTCTAAATTTTCCACCATTTGGGCCTATTCAAAAA
1 TATTTTCTTTTTTGTTGG-ATTTCTAAATTTTCCACCATTTGGGCCAATTCAAAAA
*
179878 T-TCTTCTTTT
1 TATTTTCTTTT
179888 ATTTATTTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
54 12 0.21
55 37 0.64
56 9 0.16
ACGTcount: A:0.24, C:0.15, G:0.08, T:0.53
Consensus pattern (55 bp):
TATTTTCTTTTTTGTTGGATTTCTAAATTTTCCACCATTTGGGCCAATTCAAAAA
Found at i:179903 original size:5 final size:5
Alignment explanation
Indices: 179884--179915 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
179874 AAAATTCTTC
179884 TTTTA -TTTA -TTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
179916 TCTTTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 8 0.31
5 18 0.69
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:181205 original size:40 final size:42
Alignment explanation
Indices: 181119--181207 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 42
181109 AGTAAACAAA
*
181119 GCTCCTCTAAACAAGGGCTCAACAACTTCGAGAAAAATAAATG
1 GCTCCTCTAAACAAGGGCACAACAACTTC-AGAAAAATAAATG
*
181162 GCTCCTCTAAAC-AGAGGCACAACAACTT-TGAAAAATAAA-G
1 GCTCCTCTAAACAAG-GGCACAACAACTTCAGAAAAATAAATG
181202 GCTCCT
1 GCTCCT
181208 TGACAATCAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
40 7 0.16
41 10 0.23
42 2 0.05
43 24 0.56
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.19
Consensus pattern (42 bp):
GCTCCTCTAAACAAGGGCACAACAACTTCAGAAAAATAAATG
Found at i:181497 original size:21 final size:21
Alignment explanation
Indices: 181472--181776 Score: 229
Period size: 21 Copynumber: 13.6 Consensus size: 21
181462 TTGGTTTTAC
*
181472 AACTCAAAAATTCTCATTTGA
1 AACTCAAAGATTCTCATTTGA
181493 AACTCAAAGATTCTCATTTGAA
1 AACTCAAAGATTCTCATTTG-A
181515 AACTCAAAGATTCTCATTTGA
1 AACTCAAAGATTCTCATTTGA
* *
181536 AACTTAAACATTCTCATTTGAA
1 AACTCAAAGATTCTCATTTG-A
*
181558 AACTCAAAAATTCTCATTTGA
1 AACTCAAAGATTCTCATTTGA
* *
181579 AGATTCAAATATTCTCATTTGA
1 A-ACTCAAAGATTCTCATTTGA
* *
181601 GGATTTCTTAAAGATTCTCATTTGA
1 --A--ACTCAAAGATTCTCATTTGA
* *
181626 GGATTTCTTAAAGATTCTCATTT-A
1 --A--ACTCAAAGATTCTCATTTGA
* *
181650 AGACTCATAGATTCTCATTTAA
1 A-ACTCAAAGATTCTCATTTGA
181672 AACTCAAAGATTCTCATTTGA
1 AACTCAAAGATTCTCATTTGA
** * *
181693 GGATTTTTTATAGATTCTCATTT-A
1 --A--ACTCAAAGATTCTCATTTGA
181717 AGACTCAAAGATTCTCATTTGA
1 A-ACTCAAAGATTCTCATTTGA
* *
181739 GGATTTCTTAAAGATTCTCATTT-A
1 --A--ACTCAAAGATTCTCATTTGA
181763 AGACTCAAAGATTC
1 A-ACTCAAAGATTC
181777 ATTTGAGGAT
Statistics
Matches: 236, Mismatches: 33, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
21 97 0.41
22 64 0.27
23 1 0.00
24 5 0.02
25 69 0.29
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (21 bp):
AACTCAAAGATTCTCATTTGA
Found at i:181622 original size:25 final size:25
Alignment explanation
Indices: 181498--181818 Score: 236
Period size: 25 Copynumber: 14.1 Consensus size: 25
181488 TTTGAAACTC
* *
181498 AAAGATTCTCATTTGAA-A--ACTC
1 AAAGATTCTCATTTGAAGATTTCTT
181520 AAAGATTCTCATTTGAA-A---CTT
1 AAAGATTCTCATTTGAAGATTTCTT
* * *
181541 AAACATTCTCATTTGAA-A--ACTC
1 AAAGATTCTCATTTGAAGATTTCTT
*
181563 AAAAATTCTCATTTGAAGA-TTC--
1 AAAGATTCTCATTTGAAGATTTCTT
* *
181585 AAATATTCTCATTTGAGGATTTCTT
1 AAAGATTCTCATTTGAAGATTTCTT
*
181610 AAAGATTCTCATTTGAGGATTTCTT
1 AAAGATTCTCATTTGAAGATTTCTT
*
181635 AAAGATTCTCATTT-AAGA---CTC
1 AAAGATTCTCATTTGAAGATTTCTT
* * *
181656 ATAGATTCTCATTT-AA-A--ACTC
1 AAAGATTCTCATTTGAAGATTTCTT
* *
181677 AAAGATTCTCATTTGAGGATTTTTT
1 AAAGATTCTCATTTGAAGATTTCTT
* *
181702 ATAGATTCTCATTT-AAGA---CTC
1 AAAGATTCTCATTTGAAGATTTCTT
*
181723 AAAGATTCTCATTTGAGGATTTCTT
1 AAAGATTCTCATTTGAAGATTTCTT
*
181748 AAAGATTCTCATTT-AAGA---CTC
1 AAAGATTCTCATTTGAAGATTTCTT
*
181769 AAAGA-T-TCATTTGAGGATTTCTT
1 AAAGATTCTCATTTGAAGATTTCTT
*
181792 AAAGATTCTCATTTGAAGATTTATT
1 AAAGATTCTCATTTGAAGATTTCTT
181817 AA
1 AA
181819 TTATATTTAA
Statistics
Matches: 249, Mismatches: 29, Indels: 39
0.79 0.09 0.12
Matches are distributed among these distances:
19 6 0.02
20 5 0.02
21 73 0.29
22 57 0.23
23 12 0.05
24 11 0.04
25 85 0.34
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (25 bp):
AAAGATTCTCATTTGAAGATTTCTT
Found at i:181688 original size:67 final size:68
Alignment explanation
Indices: 181498--181736 Score: 272
Period size: 67 Copynumber: 3.5 Consensus size: 68
181488 TTTGAAACTC
* * * **
181498 AAAGATTCTCATTTGAAAACTCAAAGATTCTCATTTGAAACTTAAACATTCTCATTTGA--A-AA
1 AAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAACTTAAAGATTCTCATTTGAGGATTT
*
181560 CTC
66 CTT
* * * **
181563 AAAAATTCTCATTTGAAGATTCAAATATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTGAGG
1 AAAGATTCTCATTTGAAGACTCAAAGATTCTCATTT-A--A-AACTTAAAGATTCTCATTTGAGG
181628 ATTTCTT
62 ATTTCTT
* *
181635 AAAGATTCTCATTT-AAGACTCATAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAGGATTT
1 AAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAACTTAAAGATTCTCATTTGAGGATTT
*
181699 TTT
66 CTT
*
181702 ATAGATTCTCATTT-AAGACTCAAAGATTCTCATTT
1 AAAGATTCTCATTTGAAGACTCAAAGATTCTCATTT
181737 GAGGATTTCT
Statistics
Matches: 146, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
65 32 0.22
67 59 0.40
68 2 0.01
69 18 0.12
70 1 0.01
71 19 0.13
72 15 0.10
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (68 bp):
AAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAACTTAAAGATTCTCATTTGAGGATTT
CTT
Found at i:181706 original size:46 final size:46
Alignment explanation
Indices: 181658--181810 Score: 256
Period size: 46 Copynumber: 3.3 Consensus size: 46
181648 TAAGACTCAT
* * *
181658 AGATTCTCATTTAAAACTCAAAGATTCTCATTTGAGGATTTTTTAT
1 AGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATTTCTTAA
181704 AGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATTTCTTAA
1 AGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATTTCTTAA
181750 AGATTCTCATTTAAGACTCAAAGA-T-TCATTTGAGGATTTCTTAA
1 AGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATTTCTTAA
181794 AGATTCTCATTTGAAGA
1 AGATTCTCATTT-AAGA
181811 TTTATTAATT
Statistics
Matches: 103, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
44 31 0.30
45 5 0.05
46 67 0.65
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (46 bp):
AGATTCTCATTTAAGACTCAAAGATTCTCATTTGAGGATTTCTTAA
Found at i:181746 original size:113 final size:112
Alignment explanation
Indices: 181475--181776 Score: 366
Period size: 113 Copynumber: 2.7 Consensus size: 112
181465 GTTTTACAAC
* ** *
181475 TCAAAAATTCTCATTTGAA-ACTCAAAGATTCTCATTTGA--A-AACTCAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTT-A
* *
181536 A-ACTTAAACATTCTCATTTGAAAACTCAAAAATTCTCATTTGAAGAT
65 AGACTCAAAGATTCTCATTTGAAAACTCAAAAATTCTCATTTGAAGAT
* * *
181583 TCAAATATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATT
1 TCAAAGATTCTCATTTGAAGA---CTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATT
* * *
181648 TAAGACTCATAGATTCTCATTT-AAAACTCAAAGATTCTCATTTGAGGATTTT
63 TAAGACTCAAAGATTCTCATTTGAAAACTCAAAAATTCTCATTTGAAGA---T
* *
181700 TTATAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAA
1 TCAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAA
181764 GACTCAAAGATTC
66 GACTCAAAGATTC
181777 ATTTGAGGAT
Statistics
Matches: 166, Mismatches: 17, Indels: 17
0.83 0.09 0.09
Matches are distributed among these distances:
108 17 0.10
109 1 0.01
112 18 0.11
113 55 0.33
114 27 0.16
115 31 0.19
116 3 0.02
117 14 0.08
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (112 bp):
TCAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTGAGGATTTCTTAAAGATTCTCATTTAA
GACTCAAAGATTCTCATTTGAAAACTCAAAAATTCTCATTTGAAGAT
Found at i:182496 original size:50 final size:50
Alignment explanation
Indices: 182407--182502 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
182397 TTTTATTTGG
* * *
182407 ATTTCTAAATTTTCCACCATTTGGGTCAATTTAGAAAATTTTTTTTTGAA
1 ATTTCTAAATTTTACACCATTTGGGCCAATTTAGAAAATTCTTTTTTGAA
**
182457 ATTTCTAAATTTTACACCATTTGGGCCTTCTTTAG-AAATTCTTTTT
1 ATTTCTAAATTTTACACCATTTGGGCC-AATTTAGAAAATTCTTTTT
182503 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 35 0.88
51 5 0.12
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (50 bp):
ATTTCTAAATTTTACACCATTTGGGCCAATTTAGAAAATTCTTTTTTGAA
Found at i:182873 original size:185 final size:184
Alignment explanation
Indices: 182535--182888 Score: 418
Period size: 185 Copynumber: 1.9 Consensus size: 184
182525 ATAATATGAC
* ** * *
182535 AATTACTTTTCTTGAAATTTTATTTAAATTCTTCCACTATTTGGGACAAATTTAAAAAATTTCTC
1 AATTACTTTTATTGAAACCTTATCTAAATTATTCCACTATTTGGGACAAATTTAAAAAATTTCTC
* * * *
182600 AGCTAGAGATTTCTTAAAAAATTTATCATTCGAAATTTCTAAGATTCTCATCCTTGGATAATTAT
66 ACCTAGAGAATTCTTAAAAAATTTATCATTCGAAATTTCTAAAATTCTCATCATTGGATAATTA-
*
182665 CAAATATTTTCAACCAATTTTTT-ATTTTTTATTTTTTTGTTTGAAAGTAAATATT
130 CAAATATTTTC-ACCAATTTTTTAATTTTTTATTCTTTTGTTTGAAAGTAAATATT
* *
182720 AATTATTTTTATTGAAACCTTATCTAAATTATTCCACTATTTGGGATAAATTTAGACAAAATTTT
1 AATTACTTTTATTGAAACCTTATCTAAATTATTCCACTATTTGGGACAAATTTA-A-AAAA-TTT
* *
182785 CTCACCTAG-GAATT-TTATAATAATTTA-CTATTTGAAATTTCTATAAATTC-CATCATTGGAT
63 CTCACCTAGAGAATTCTTA-AAAAATTTATC-ATTCGAAATTTCTA-AAATTCTCATCATTGGAT
*
182846 AATTA-ATAT-TTATTC-CCAATTTTTTTTAATTTTTTATTCTTTT
125 AATTACAAATATT-TTCACCAA--TTTTTTAATTTTTTATTCTTTT
182889 AAAATAATAT
Statistics
Matches: 144, Mismatches: 15, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
183 4 0.03
184 2 0.01
185 59 0.41
186 19 0.13
187 44 0.31
188 16 0.11
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (184 bp):
AATTACTTTTATTGAAACCTTATCTAAATTATTCCACTATTTGGGACAAATTTAAAAAATTTCTC
ACCTAGAGAATTCTTAAAAAATTTATCATTCGAAATTTCTAAAATTCTCATCATTGGATAATTAC
AAATATTTTCACCAATTTTTTAATTTTTTATTCTTTTGTTTGAAAGTAAATATT
Found at i:183224 original size:15 final size:16
Alignment explanation
Indices: 183197--183241 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
183187 ATGTTTAGTT
* *
183197 ATAATTAATAATATTA
1 ATAATTTATAATAATA
*
183213 TTAATTTA-AATAATA
1 ATAATTTATAATAATA
183228 ATAATTTATAATAA
1 ATAATTTATAATAA
183242 ATGTAATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATTTATAATAATA
Found at i:183272 original size:9 final size:9
Alignment explanation
Indices: 183258--183302 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
183248 TAACCTAAAG
183258 TTATAATAA
1 TTATAATAA
183267 TTATAATAA
1 TTATAATAA
*
183276 TTTATAATAT
1 -TTATAATAA
183286 TTATATATAA
1 TTATA-ATAA
183296 TT-TAATA
1 TTATAATA
183303 TCTAACTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 3 0.09
9 16 0.50
10 13 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TTATAATAA
Found at i:183280 original size:19 final size:19
Alignment explanation
Indices: 183225--183299 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 19
183215 AATTTAAATA
183225 ATAATAATTTATAATAAATGT
1 ATAATAATTTATAAT-AAT-T
*
183246 AATAACCTAAAGTTATAATAATT
1 -ATAA--T-AATTTATAATAATT
*
183269 ATAATAATTTATAATATTT
1 ATAATAATTTATAATAATT
183288 ATATATAATTTA
1 ATA-ATAATTTA
183300 ATATCTAACT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
19 15 0.33
20 9 0.20
22 8 0.17
23 1 0.02
24 4 0.09
25 9 0.20
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
ATAATAATTTATAATAATT
Found at i:183459 original size:19 final size:20
Alignment explanation
Indices: 183430--183478 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
183420 ATATTAAAGC
* *
183430 ATATAATAAATTATA-ATTAA
1 ATAT-ATAAATAATAGATAAA
183450 ATATATAAATAATAGATAAA
1 ATATATAAATAATAGATAAA
183470 ATACTATAA
1 ATA-TATAA
183479 TATAGTAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 9 0.36
20 11 0.44
21 5 0.20
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (20 bp):
ATATATAAATAATAGATAAA
Found at i:183642 original size:15 final size:15
Alignment explanation
Indices: 183602--183644 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
183592 TTAAGATAAT
*
183602 TATATTATTTA-TAA
1 TATATTATTAATTAA
183616 TATATT-TATAATTAA
1 TATATTAT-TAATTAA
183631 TATATTATTAATTA
1 TATATTATTAATTA
183645 TAGTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 8 0.32
15 15 0.60
16 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATATTATTAATTAA
Found at i:183646 original size:27 final size:29
Alignment explanation
Indices: 183602--183660 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 29
183592 TTAAGATAAT
* * *
183602 TATATTATTTATAATATATTTATAATTAA
1 TATATTATTTATAATATAGTAAAAATTAA
*
183631 TATATTA-TTA-ATTATAGTAAAAATTAA
1 TATATTATTTATAATATAGTAAAAATTAA
183658 TAT
1 TAT
183661 TTAAATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 16 0.62
28 3 0.12
29 7 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (29 bp):
TATATTATTTATAATATAGTAAAAATTAA
Found at i:183745 original size:19 final size:17
Alignment explanation
Indices: 183718--183758 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
183708 TAATTAATAC
183718 AATTAATTTAACTACTAAT
1 AATTAATTTAA-TA-TAAT
*
183737 AATTTATTTAATATAAT
1 AATTAATTTAATATAAT
183754 AATTA
1 AATTA
183759 TAATATACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 8 0.40
18 2 0.10
19 10 0.50
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAATTTAATATAAT
Found at i:183794 original size:13 final size:12
Alignment explanation
Indices: 183757--183814 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
183747 ATATAATAAT
*
183757 TATAATATACTA
1 TATAATATATTA
*
183769 TTTAA-AT-TTA
1 TATAATATATTA
183779 TATAATATAATTA
1 TATAATAT-ATTA
183792 TATGAATATATTA
1 TAT-AATATATTA
183805 -ATAAT-TATTA
1 TATAATATATTA
183815 AATTAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 10 0.26
14 5 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TATAATATATTA
Found at i:184078 original size:24 final size:23
Alignment explanation
Indices: 184029--184091 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
184019 AATAATTATG
*
184029 TATATTAATAAATATTTAAATAA
1 TATATTAATAAATAGTTAAATAA
*
184052 TATACTTAAT-AATAGTTAATATTA
1 TATA-TTAATAAATAGTTAA-ATAA
184076 TATATATAATTAAATA
1 TATAT-TAA-TAAATA
184092 AACATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 13 0.39
24 15 0.45
25 1 0.03
26 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (23 bp):
TATATTAATAAATAGTTAAATAA
Found at i:184949 original size:19 final size:20
Alignment explanation
Indices: 184915--184968 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
184905 ATTAATAGTC
*
184915 AAATATTAACATTATTTTATTA
1 AAATA-TAA-ATTATTTAATTA
184937 AAA-ATAAATTA-TTAATTA
1 AAATATAAATTATTTAATTA
*
184955 AAATATTAATTATT
1 AAATATAAATTATT
184969 AATATTTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 9 0.32
19 11 0.39
20 4 0.14
21 1 0.04
22 3 0.11
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
AAATATAAATTATTTAATTA
Found at i:184969 original size:19 final size:18
Alignment explanation
Indices: 184933--184971 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
184923 ACATTATTTT
184933 ATTAAAAATAAATTATTA
1 ATTAAAAATAAATTATTA
*
184951 ATTAAAATATTAATTATTA
1 ATTAAAA-ATAAATTATTA
184970 AT
1 AT
184972 ATTTCAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTAAAAATAAATTATTA
Found at i:185320 original size:23 final size:23
Alignment explanation
Indices: 185281--185325 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
185271 TGGATAACAA
*
185281 ATTACTAATATTATAATTATTAT
1 ATTACTAATAATATAATTATTAT
185304 ATTA-TAATAATATTAATTATTA
1 ATTACTAATAATA-TAATTATTA
185326 GTAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTACTAATAATATAATTATTAT
Found at i:185348 original size:38 final size:40
Alignment explanation
Indices: 185281--185356 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
185271 TGGATAACAA
*
185281 ATTACTAATATTATAATTATTATATTATAATAATATTAATT
1 ATTACTAATATTATAAATATTATATTATAATAA-ATTAATT
*
185322 ATTAGTAA-ATTATAAATATTA-A-TATAATAAATTAA
1 ATTACTAATATTATAAATATTATATTATAATAAATTAA
185357 AATAATAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 5 0.15
38 8 0.24
39 1 0.03
40 12 0.36
41 7 0.21
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (40 bp):
ATTACTAATATTATAAATATTATATTATAATAAATTAATT
Found at i:185355 original size:22 final size:23
Alignment explanation
Indices: 185312--185360 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
185302 ATATTATAAT
*
185312 AATATTAATTATTAGTAAATTATA
1 AATATTAATTATTAATAAATTA-A
185336 AATATTAA-TA-TAATAAATTAA
1 AATATTAATTATTAATAAATTAA
185357 AATA
1 AATA
185361 ATAACAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 5 0.21
22 9 0.38
23 2 0.08
24 8 0.33
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AATATTAATTATTAATAAATTAA
Found at i:187098 original size:181 final size:180
Alignment explanation
Indices: 186826--187339 Score: 383
Period size: 181 Copynumber: 2.8 Consensus size: 180
186816 TTTTATCATA
* * * * * * * * *
186826 AAACAATTGTTTTTGTTAATATAAGTTTGTTTGAAATAAAATAATATTATTTTATTAATA-TTTA
1 AAACAATTG-TTCTGTTCATACAAGCTTATTTGAATTAAAATAATACTAATTTAATAATATTTTA
* **** * * ** * **
186890 GAAAATAAATCTGTAAGAGATTTAAAAAGA-AAATTTGCTTACCAAACTA-TTCCAAATAGTTTT
65 -AAAATTAATAACCAAGAAAATTAAAAA-ATAAATTTAATTACCAAACCAGTT-CAAATAGTTAA
* * *
186953 GACTATTTCAATAATTATTTATTTCATATCGTTATAACCTTTTATTTT-ATCATC
127 GACTATATCAATAATTATCTATTTCAAATCGTTATAACCTTTTATTTTAAT-ATC
* **
187007 AAACAATTGGTTCTGTTCATACTATTTTATTTAGAATT-AAATAATACTAATTTAATAATATTTT
1 AAACAATT-GTTCTGTTCATACAAGCTTATTT-GAATTAAAATAATACTAATTTAATAATATTTT
* * * *
187071 GAAACTTAATAACCAAGAAAATTAAAAAATAAATTTAATTATCGAACCAGTTCAAATAGTTAAGA
64 AAAAATTAATAACCAAGAAAATTAAAAAATAAATTTAATTACCAAACCAGTTCAAATAGTTAAGA
* * * * ** * * *
187136 CTCTATGAATGATTATCTATTTCAAATTGTTATGTCCTTTTCTTTTAATGTT
129 CTATATCAATAATTATCTATTTCAAATCGTTATAACCTTTTATTTTAATATC
* * * *
187188 AAACAATTGTTTTGTTCGTACAAGCTTATTTGGATTAAAATAATATTAATTTAATAATATTTTAA
1 AAACAATTGTTCTGTTCATACAAGCTTATTTGAATTAAAATAATACTAATTTAATAATATTTTAA
** * * * * ** ** * * * *
187253 AAATTAATAAATAACAGATTTAAAAAATGAATTTGTTTACTGAATCAGTTCAAATGGTTAAAATT
66 AAATTAATAACCAAGAAAATTAAAAAATAAATTTAATTACCAAACCAGTTCAAATAGTTAAGACT
*
187318 AT-TAGAATAATTATCTATTTCA
131 ATAT-CAATAATTATCTATTTCA
187340 TATCATTTAT
Statistics
Matches: 262, Mismatches: 63, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
179 5 0.02
180 113 0.43
181 132 0.50
182 12 0.05
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (180 bp):
AAACAATTGTTCTGTTCATACAAGCTTATTTGAATTAAAATAATACTAATTTAATAATATTTTAA
AAATTAATAACCAAGAAAATTAAAAAATAAATTTAATTACCAAACCAGTTCAAATAGTTAAGACT
ATATCAATAATTATCTATTTCAAATCGTTATAACCTTTTATTTTAATATC
Found at i:188298 original size:181 final size:181
Alignment explanation
Indices: 187967--188437 Score: 506
Period size: 181 Copynumber: 2.6 Consensus size: 181
187957 TTCGGTAAAC
* * *
187967 AGATTCATTTTTTAAATCTCTCACTTATTAATTTTTGGAATATTAATAAATTAGAATTATGTTAT
1 AGATACATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATGTTAT
* * * *
188032 TCTGAATAAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACGATTTG
66 TCTGAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGGTCATAACAATTTG
* * * ** *
188097 AAATAGATAAATGTTCAAATAGTCATAATTGTTTGCACTGGTCAAGCCAAA-
131 AAATAAATAAATGGTCAAATAGTCATAACTAATTGAACTGGT-AAGCCAAAT
* * ** *
188148 AGGTACATTTTCTAAATC-CATTACTTATTAATTTTCAAAATATTAATAAATTAGCATTACT-TT
1 AGATACATTTTTTAAATCTC-TTACTTATTAATTTTTGAAATATTAATAAATTAGAATTA-TGTT
* * * * *
188211 ATT-TCGAATAAGATTATATGAATAGAAACAATTGTTTTATGATAAAACAAATGGTCATAATAAT
64 ATTCT-GAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGGTCATAACAAT
** * * *
188275 TTGAAATAAATATTTGGTCAAATAGTTATAACTAATTGAACTGGTATGGCAAAT
128 TTGAAATAAATAAATGGTCAAATAGTCATAACTAATTGAACTGGTAAGCCAAAT
** *
188329 AGATTTATTTTTTAAATCTCTTACGTATTAATTTTTGAAATATTAATAAATTA-ATATTAT-TTA
1 AGATACATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGA-ATTATGTTA
** * * * *
188392 TTCCAAACAA-ACTTATATGAGCAAAAACATTTGTTTTATGACAAAA
65 TTCTGAATAAGA-TTATATGAACAAAAACAATTGTTTTATGAGAAAA
188438 TTGATATTAT
Statistics
Matches: 238, Mismatches: 44, Indels: 17
0.80 0.15 0.06
Matches are distributed among these distances:
179 1 0.00
180 47 0.20
181 188 0.79
182 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.39
Consensus pattern (181 bp):
AGATACATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTATGTTAT
TCTGAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGGTCATAACAATTTG
AAATAAATAAATGGTCAAATAGTCATAACTAATTGAACTGGTAAGCCAAAT
Found at i:188772 original size:13 final size:14
Alignment explanation
Indices: 188752--188786 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
188742 TAATATAATA
*
188752 ATTAATAAGATTAT
1 ATTAATAAAATTAT
188766 A-TAATAAAATTAT
1 ATTAATAAAATTAT
188779 ATTAATAA
1 ATTAATAA
188787 TTATTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
ATTAATAAAATTAT
Found at i:188782 original size:18 final size:17
Alignment explanation
Indices: 188761--188805 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
188751 AATTAATAAG
188761 ATTATATAATAAAATTAT
1 ATTA-ATAATAAAATTAT
**
188779 ATTAATAATTATTATTAT
1 ATTAATAA-TAAAATTAT
188797 ATTAATAAT
1 ATTAATAAT
188806 TATTATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAATAATAAAATTAT
Found at i:188802 original size:15 final size:15
Alignment explanation
Indices: 188773--188827 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
188763 TATATAATAA
188773 AATTA-TATTA-A-T
1 AATTATTATTATATT
188785 AATTATTATTATATT
1 AATTATTATTATATT
*
188800 AATAATTATTAT-TAT
1 AATTATTATTATAT-T
188815 AATTATGTATTAT
1 AATTAT-TATTAT
188828 GTATTATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
12 5 0.14
13 5 0.14
14 2 0.06
15 18 0.50
16 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
AATTATTATTATATT
Found at i:188806 original size:18 final size:19
Alignment explanation
Indices: 188774--188842 Score: 90
Period size: 18 Copynumber: 3.7 Consensus size: 19
188764 ATATAATAAA
188774 ATTAT-ATTAATAATTATT
1 ATTATAATTAATAATTATT
188792 ATTAT-ATTAATAATTATT
1 ATTATAATTAATAATTATT
*
188810 ATTATAATT-ATGTATTATGT
1 ATTATAATTAAT-AATTAT-T
188830 ATTATAATTAATA
1 ATTATAATTAATA
188843 TAAATTATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
18 25 0.56
19 8 0.18
20 10 0.22
21 2 0.04
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
ATTATAATTAATAATTATT
Found at i:188809 original size:10 final size:9
Alignment explanation
Indices: 188778--188858 Score: 54
Period size: 10 Copynumber: 8.1 Consensus size: 9
188768 AATAAAATTA
188778 TATTAATAAT
1 TATT-ATAAT
188788 TATTATTATAT
1 TATTA-TA-AT
* *
188799 TAATAATTAT
1 T-ATTATAAT
188809 TATTATAAT
1 TATTATAAT
*
188818 TATGTATTAT
1 TAT-TATAAT
188828 GTATTATAAT
1 -TATTATAAT
*
188838 TAATATAAAT
1 TATTAT-AAT
188848 TATTAATAAT
1 TATT-ATAAT
188858 T
1 T
188859 TGATATATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
9 15 0.27
10 29 0.52
11 9 0.16
12 3 0.05
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (9 bp):
TATTATAAT
Found at i:189153 original size:18 final size:18
Alignment explanation
Indices: 189122--189156 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
189112 TACTAATCTG
*
189122 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
189140 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
189157 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:189377 original size:9 final size:8
Alignment explanation
Indices: 189365--189421 Score: 53
Period size: 9 Copynumber: 6.9 Consensus size: 8
189355 TTTATTATAT
189365 TAATATTTA
1 TAATA-TTA
189374 TAATATTA
1 TAATATTA
*
189382 CTAATAAT-
1 -TAATATTA
189390 TAATATTA
1 TAATATTA
* *
189398 TTATAATA
1 TAATATTA
189406 TAATAATTA
1 TAAT-ATTA
189415 TAATATT
1 TAATATT
189422 TTTATAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
7 6 0.15
8 15 0.38
9 18 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (8 bp):
TAATATTA
Found at i:189391 original size:25 final size:24
Alignment explanation
Indices: 189363--189438 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
189353 AATTTATTAT
189363 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTA-TAATA
* *
189388 ATTAATA-TTATTATAATATAATA
1 ATTAATATTTATAATATTATAATA
189411 ATTATAATATTTTTATAATATTAGTAAT
1 A-T-TAATA--TTTATAATATTA-TAAT
189439 TTTGTTATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 6 0.15
24 10 0.24
25 12 0.29
28 9 0.22
29 4 0.10
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:189395 original size:16 final size:16
Alignment explanation
Indices: 189372--189419 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
189362 TATTAATATT
189372 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
*
189389 T-TAATATTATTATAA
1 TATAATATTATAATAA
189404 TATAATAATTATAATA
1 TATAAT-ATTATAATA
189420 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:190041 original size:19 final size:18
Alignment explanation
Indices: 190019--190075 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
190009 ATTAATAAGT
190019 TAATTATTAATATTTATTA
1 TAATTATTAATA-TTATTA
*
190038 TAATTA-T-ATATAATTA
1 TAATTATTAATATTATTA
190054 T-ATTATTTAATAATTATTA
1 TAATTA-TTAAT-ATTATTA
190073 TAA
1 TAA
190076 ATTTATATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.13
16 6 0.19
17 4 0.13
18 3 0.10
19 13 0.42
20 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTATTAATATTATTA
Found at i:190049 original size:10 final size:9
Alignment explanation
Indices: 190019--190075 Score: 55
Period size: 10 Copynumber: 6.3 Consensus size: 9
190009 ATTAATAAGT
190019 TAATTATTAA
1 TAATTATT-A
*
190029 TATTTATTA
1 TAATTATTA
190038 TAATTATATA
1 TAATTAT-TA
190048 TAATTA-TA
1 TAATTATTA
* *
190056 TTATT-TAA
1 TAATTATTA
190064 TAATTATTA
1 TAATTATTA
190073 TAA
1 TAA
190076 ATTTATATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
8 11 0.29
9 12 0.32
10 15 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TAATTATTA
Found at i:190616 original size:18 final size:18
Alignment explanation
Indices: 190557--190617 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
190547 TTTAAAAAAC
*
190557 AAATTA-TAATAAAATTAT
1 AAATTATTAAT-AAATAAT
* *
190575 TAATTATTAATAAGTAAT
1 AAATTATTAATAAATAAT
**
190593 TTATTATTAATAAATAAT
1 AAATTATTAATAAATAAT
190611 AAATTAT
1 AAATTAT
190618 ATTTATAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
18 31 0.89
19 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AAATTATTAATAAATAAT
Found at i:191272 original size:23 final size:22
Alignment explanation
Indices: 191233--191278 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
191223 TTATATGATT
191233 AATATATTAAAGCATATAATATA
1 AATATATTAAAGCATATAA-ATA
*
191256 AATATAATTAAA-TATATAAATA
1 AATAT-ATTAAAGCATATAAATA
191278 A
1 A
191279 TAGATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 11 0.52
24 6 0.29
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATATTAAAGCATATAAATA
Found at i:191493 original size:19 final size:19
Alignment explanation
Indices: 191471--191537 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
191461 TTGAAACAAT
*
191471 ATTAATAATTTATTTTATA
1 ATTAATAATTTATTTAATA
* *
191490 ATTAATAAAATTAATTTAACA
1 ATTAAT--AATTTATTTAATA
*
191511 ACTAATAATTTATTTAAT-
1 ATTAATAATTTATTTAATA
191529 A-TAATAATT
1 ATTAATAATT
191538 ATAATATACT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
17 8 0.20
18 1 0.03
19 16 0.40
21 15 0.38
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTAATAATTTATTTAATA
Found at i:191574 original size:13 final size:12
Alignment explanation
Indices: 191537--191594 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
191527 ATATAATAAT
*
191537 TATAATATACTA
1 TATAATATATTA
*
191549 TTTAA-AT-TTA
1 TATAATATATTA
191559 TATAATATAATTA
1 TATAATAT-ATTA
191572 TATGAATATATTA
1 TAT-AATATATTA
191585 -ATAAT-TATTA
1 TATAATATATTA
191595 AATTAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 10 0.26
14 5 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TATAATATATTA
Found at i:191653 original size:15 final size:14
Alignment explanation
Indices: 191627--191665 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
191617 TATAGATCTT
*
191627 ATTAAGATATAAAA
1 ATTAATATATAAAA
*
191641 ATTAATA-ATATAA
1 ATTAATATATAAAA
191654 ATTAATATATAA
1 ATTAATATATAA
191666 TGAAGTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
ATTAATATATAAAA
Found at i:191846 original size:24 final size:24
Alignment explanation
Indices: 191801--191847 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
191791 ATTATGCATA
*
191801 TTAATAAATATTTAAATAATATAC
1 TTAATAAATAGTTAAATAATATAC
*
191825 TTAAT-AATAGTTAATATTATATA
1 TTAATAAATAGTTAA-ATAATATA
191848 TAATTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
TTAATAAATAGTTAAATAATATAC
Found at i:193058 original size:25 final size:23
Alignment explanation
Indices: 193029--193077 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
193019 AAAATTACTA
193029 ATATTATAAAAATATTATAATTATT
1 ATATTATAAAAATA-T-TAATTATT
*
193054 ATATTATAATAATATTAATTATT
1 ATATTATAAAAATATTAATTATT
193077 A
1 A
193078 GTAATGTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.39
24 1 0.04
25 13 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATATTATAAAAATATTAATTATT
Found at i:193070 original size:11 final size:11
Alignment explanation
Indices: 193027--193070 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
193017 ACAAAATTAC
193027 TAATATTATAA
1 TAATATTATAA
*
193038 AAATATTATAA
1 TAATATTATAA
193049 TTATTATATTATAA
1 -TA--ATATTATAA
193063 TAATATTA
1 TAATATTA
193071 ATTATTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 2 0.07
14 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATATTATAA
Found at i:194236 original size:179 final size:181
Alignment explanation
Indices: 193905--194278 Score: 432
Period size: 179 Copynumber: 2.1 Consensus size: 181
193895 CATATTTACT
** * * * **
193905 TATTTCAAATTGTTATAACCTTTTATTTTATCATCAAACAATTGTTTCTGTTCATACTATTTTAT
1 TATTTCAAATCATTATAACCTTTTATTTTAACATAAAACAATTGTTTCTGTTCATACAAGCTTAT
* * *
193970 TTAGAATAAAATAATACTAATTTAATGATATTTCGAAACTTAATAACCAAGAAAATTAAAAAATA
66 TTAGAATAAAATAATACTAATTTAATAATATTTCGAAAATTAATAACAAAGAAAATTAAAAAATA
** * *
194035 AATCTAATTGTTGAACCAGTTCAAATAGTTAAGACTCTA-T-GAATGATTATC
131 AATCTAATTACTGAACCAGTTCAAATAGTTAA-AAT-TATTAGAATAATTATC
* * * *
194086 TATTTCAAATCATTATGACCTTTTCTTTTAACATAAAATAATTGTTT-TGTTCGTACAAGCTTAT
1 TATTTCAAATCATTATAACCTTTTATTTTAACATAAAACAATTGTTTCTGTTCATACAAGCTTAT
* * * * * *
194150 TTGGATTAAAATAATACTAATTTAATAAT-TTTTGAAAATTAATAAGAAAGAGATTTAAAAAATA
66 TTAGAATAAAATAATACTAATTTAATAATATTTCGAAAATTAATAACAAAGAAAATTAAAAAATA
* ** * *
194214 AATTTGTTTACTGAATCAGTTCAAATGGTTAAAATTATTAGAATAATTATC
131 AATCTAATTACTGAACCAGTTCAAATAGTTAAAATTATTAGAATAATTATC
*
194265 TATTTCATATCATT
1 TATTTCAAATCATT
194279 TATATTTATT
Statistics
Matches: 161, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
177 2 0.01
178 3 0.02
179 77 0.48
180 39 0.24
181 40 0.25
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
TATTTCAAATCATTATAACCTTTTATTTTAACATAAAACAATTGTTTCTGTTCATACAAGCTTAT
TTAGAATAAAATAATACTAATTTAATAATATTTCGAAAATTAATAACAAAGAAAATTAAAAAATA
AATCTAATTACTGAACCAGTTCAAATAGTTAAAATTATTAGAATAATTATC
Found at i:194766 original size:181 final size:181
Alignment explanation
Indices: 194447--194825 Score: 467
Period size: 181 Copynumber: 2.1 Consensus size: 181
194437 TTTATAATAT
* *
194447 AAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTA
1 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTTTAAATCTCTTACTCATTA
* * * * * * * ** *
194512 ATTTTTGGAATAGTAATAAGTTAGTATTTTTTTATTTCGAATAAGCCTATATGAATTGATATAAT
66 ATTATTGAAATAGTAATAAATTAATATTTTTTAATCTCGAATAAGCCTAAATGAATAAAAATAAT
* * * *
194577 TGTTTTATGGCGAAATAAAAGATCATAACGATTTGAAATAGA-TAATTATTC
131 TATTTTATGACAAAACAAAAGATCATAACGATTTGAAATA-ACTAATTATTC
* * * * * * * *
194628 AGATAGTTATTACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAATCCTTTTGCTTATT
1 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTTTAAAT-CTCTTACTCATT
*
194693 AATTATTGAAATATTAATAAATTAATATTATTTTAATCT-GAATAAG-CTAAATGAATAAAAATA
65 AATTATTGAAATAGTAATAAATTAATATT-TTTTAATCTCGAATAAGCCTAAATGAATAAAAATA
* *
194756 ATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAACTAATTGTTC
129 ATTATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAACTAATTATTC
194809 AAATAGTCATAACTATT
1 AAATAGTCATAACTATT
194826 CAAAATTATT
Statistics
Matches: 165, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
180 1 0.01
181 117 0.71
182 40 0.24
183 7 0.04
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (181 bp):
AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTTTAAATCTCTTACTCATTA
ATTATTGAAATAGTAATAAATTAATATTTTTTAATCTCGAATAAGCCTAAATGAATAAAAATAAT
TATTTTATGACAAAACAAAAGATCATAACGATTTGAAATAACTAATTATTC
Found at i:195355 original size:181 final size:181
Alignment explanation
Indices: 194852--195426 Score: 478
Period size: 181 Copynumber: 3.2 Consensus size: 181
194842 AAAGATTGGA
* * * * * * *
194852 AATAAGCTTATATGAATAAAAA-AATTATTTTATGACAATACAAAAGGTTATAGCA-ATTT-AAA
1 AATAAGATTATATGAACAAAAACAATTATTTTAAGAGAAAACAAAAGGTCATA-AAGATTTGAAA
* * * * ** **
194914 CTAGATAATTATTCAAATAGCCATAA-TTATGTGAACTT-GT-TTGGTAAACAGATTCATTTTTT
65 -TAAATAATTAGTCAAATAGTCATAACTAAT-TGAA-TTGGTCAAGCCAAACAGATTCATTTTTT
* * *
194976 AAATCTCTCATTTATTAATTTTTGAATATTAATAAATTAGAATTATGTTATTCTG
127 AAATCTCTTACTTATTAATTTTTAAATATTAATAAATTAGAATTATGTTATTCTG
* * * ** *
195031 AATAAGTTTGTATGAACAAAAACAATTGTTTTGTGGGAAAACAAAAGGTCATAAAGATTTGAAAT
1 AATAAGATTATATGAACAAAAACAATTATTTTAAGAGAAAACAAAAGGTCATAAAGATTTGAAAT
* * * ** * *
195096 AGATAATTATTCAAATAGTCATAATTGTTTGCATTGGTCAAGCCAAA-AGATACATTTTCTT-AA
66 AAATAATTAGTCAAATAGTCATAACTAATTGAATTGGTCAAGCCAAACAGATTCATTTT-TTAAA
*
195159 TC-CATTACTTATTAATTTTTAAAATATTAATAAATTAGCATTACT-TTATT-TCG
130 TCTC-TTACTTATTAATTTTT-AAATATTAATAAATTAGAATTA-TGTTATTCT-G
* * * * *
195212 AATAAGATTATATGAACAGAAACAATTATTTTAAGATAAAACAAATGGTTATAACGATTTGAAAT
1 AATAAGATTATATGAACAAAAACAATTATTTTAAGAGAAAACAAAAGGTCATAAAGATTTGAAAT
* * * * * *
195277 AAATATTTGGTCAAATAGTTATAACTAATTGAATTGGT-ATGGCAAACAGATTTATTTTTTAAAT
66 AAATAATTAGTCAAATAGTCATAACTAATTGAATTGGTCAAGCCAAACAGATTCATTTTTTAAAT
* * *
195341 CTCTTACGTATTAATTTTTTAAATATAAATAAAATTA-ATATTATTTTATTCTAG
131 CTCTTACTTATTAA-TTTTTAAATATTAAT-AAATTAGA-ATTATGTTATTCT-G
* * *
195395 ACA-AA-CTTATATGAACAAAAACATTTGTTTTA
1 A-ATAAGATTATATGAACAAAAACAATTATTTTA
195427 TGACAAAATT
Statistics
Matches: 321, Mismatches: 55, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
179 23 0.07
180 94 0.29
181 153 0.48
182 45 0.14
183 5 0.02
184 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (181 bp):
AATAAGATTATATGAACAAAAACAATTATTTTAAGAGAAAACAAAAGGTCATAAAGATTTGAAAT
AAATAATTAGTCAAATAGTCATAACTAATTGAATTGGTCAAGCCAAACAGATTCATTTTTTAAAT
CTCTTACTTATTAATTTTTAAATATTAATAAATTAGAATTATGTTATTCTG
Found at i:196007 original size:20 final size:19
Alignment explanation
Indices: 195971--196009 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
195961 TTGTTAATAC
*
195971 TTAATATTAAATTATTTAT
1 TTAATATTAAATAATTTAT
*
195990 TTAACTATTATATAATTTAT
1 TTAA-TATTAAATAATTTAT
196010 AAATTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
TTAATATTAAATAATTTAT
Found at i:196179 original size:18 final size:18
Alignment explanation
Indices: 196148--196182 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
196138 TATTAATCTG
*
196148 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
196166 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
196183 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:196295 original size:29 final size:30
Alignment explanation
Indices: 196263--196323 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
196253 ATAATAGTTA
*
196263 ATTAAATAAATACTTA-ATTTATTTAATAT
1 ATTAAATAAATACTTATAATTATTTAATAT
*
196292 ATTAAATAAATTCTTATTAATTATTTAATAT
1 ATTAAATAAATACTTA-TAATTATTTAATAT
196323 A
1 A
196324 ATAGAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 15 0.54
31 13 0.46
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTAAATAAATACTTATAATTATTTAATAT
Found at i:196353 original size:13 final size:14
Alignment explanation
Indices: 196307--196355 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
196297 ATAAATTCTT
196307 ATTAATT-AT-TTA
1 ATTAATTAATATTA
*
196319 ATATAATAGAATATTA
1 AT-TAAT-TAATATTA
196335 ATTAATTAATATT-
1 ATTAATTAATATTA
196348 ATTAATTA
1 ATTAATTA
196356 TCTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:196524 original size:21 final size:21
Alignment explanation
Indices: 196482--196540 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
196472 AATATATAAA
196482 AATATTATATAATTATCCTAAT
1 AATATTA-ATAATTATCCTAAT
* **
196504 AATATTAATCATTATGTTAAT
1 AATATTAATAATTATCCTAAT
196525 AATATTAAGTAATTAT
1 AATATTAA-TAATTAT
196541 TAATATTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
AATATTAATAATTATCCTAAT
Found at i:196771 original size:13 final size:13
Alignment explanation
Indices: 196746--196784 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
196736 TAAGTTATTC
196746 ATTATAA-TAATT
1 ATTATAATTAATT
196758 ATTATAATTAATT
1 ATTATAATTAATT
*
196771 AATATAATTAATT
1 ATTATAATTAATT
196784 A
1 A
196785 ACCATTAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 7 0.28
13 18 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTATAATTAATT
Found at i:197497 original size:25 final size:26
Alignment explanation
Indices: 197469--197519 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
197459 AAATTATGAC
* *
197469 AATTTATAATTA-ATATTTATTATAA
1 AATTTAAAATTAGATATTTATAATAA
*
197494 AATTTAAAATTAGTTATTTATAATAA
1 AATTTAAAATTAGATATTTATAATAA
197520 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
AATTTAAAATTAGATATTTATAATAA
Found at i:197759 original size:17 final size:15
Alignment explanation
Indices: 197741--197770 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
197731 TACATTAGTT
197741 ATTATT-AAATATAA
1 ATTATTAAAATATAA
197755 ATTATTAAAATATAA
1 ATTATTAAAATATAA
197770 A
1 A
197771 CTAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:198217 original size:12 final size:12
Alignment explanation
Indices: 198200--198287 Score: 50
Period size: 12 Copynumber: 7.7 Consensus size: 12
198190 TTTTTATATA
198200 AATATTATAATT
1 AATATTATAATT
198212 AATA-T-T-ATT
1 AATATTATAATT
198221 -ATA-TAT-ATT
1 AATATTATAATT
*
198230 GAATATTAAATATT
1 -AATATTATA-ATT
198244 GAATATT-TAA-T
1 -AATATTATAATT
*
198255 AGTATTTATAA-T
1 AATA-TTATAATT
198267 AATAATTATAATT
1 AAT-ATTATAATT
198280 AATATTAT
1 AATATTAT
198288 TTGAAATAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
8 4 0.06
9 7 0.11
10 4 0.06
11 7 0.11
12 24 0.39
13 6 0.10
14 10 0.16
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
AATATTATAATT
Found at i:198244 original size:14 final size:14
Alignment explanation
Indices: 198225--198255 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
198215 ATTATTATAT
198225 ATATTGAATATTAA
1 ATATTGAATATTAA
*
198239 ATATTGAATATTTA
1 ATATTGAATATTAA
198253 ATA
1 ATA
198256 GTATTTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (14 bp):
ATATTGAATATTAA
Found at i:198409 original size:11 final size:13
Alignment explanation
Indices: 198378--198439 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
198368 AAATCTATCA
198378 ATTATTAATTA-AT
1 ATTA-TAATTATAT
198391 ATTATATTTATTATAT
1 ATTATA---ATTATAT
198407 ATTATAATTATAT
1 ATTATAATTATAT
* *
198420 ATAATAAATATAT
1 ATTATAATTATAT
198433 AATTATA
1 -ATTATA
198440 TTAATTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.05
13 22 0.54
14 5 0.12
15 4 0.10
16 8 0.20
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATTATAT
Found at i:198410 original size:16 final size:16
Alignment explanation
Indices: 198380--198422 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
198370 ATCTATCAAT
*
198380 TATTAATTA-ATATTA
1 TATTTATTATATATTA
198395 TATTTATTATATATTA
1 TATTTATTATATATTA
*
198411 TAATTA-TATATA
1 TATTTATTATATA
198423 ATAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATTATATATTA
Found at i:198410 original size:22 final size:22
Alignment explanation
Indices: 198391--198459 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
198381 ATTAATTAAT
198391 ATTATATTTATTATATATTATA
1 ATTATATTTATTATATATTATA
* * *
198413 ATTATATATAATAAATA-TATA
1 ATTATATTTATTATATATTATA
*
198434 ATTATATTAATTATAATATTTATA
1 ATTATATTTATTAT-ATA-TTATA
198458 AT
1 AT
198460 AAGTAAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 14 0.38
22 17 0.46
24 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTATATTTATTATATATTATA
Found at i:198436 original size:49 final size:49
Alignment explanation
Indices: 198333--198459 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 49
198323 TTTTATTAGT
* *
198333 TTAATTAATATTATATTATTAT-TTTACTAATTACTAAATCTATCAATTA
1 TTAATTAATATTATATTATTATATTTA-TAATTACTAAATCAATAAATTA
*
198382 TTAATTAATATTATATTTATTATATATTATAATTA-TATAT-AATAAA-TA
1 TTAATTAATATTATA-TTATTATAT-TTATAATTACTAAATCAATAAATTA
*
198430 TATAATT-ATATTA-ATTATAATATTTATAAT
1 T-TAATTAATATTATATTATTATATTTATAAT
198460 AAGTAAAAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
45 7 0.10
46 8 0.11
47 1 0.01
48 9 0.13
49 24 0.34
50 11 0.16
51 7 0.10
52 3 0.04
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (49 bp):
TTAATTAATATTATATTATTATATTTATAATTACTAAATCAATAAATTA
Found at i:198457 original size:26 final size:27
Alignment explanation
Indices: 198380--198457 Score: 74
Period size: 26 Copynumber: 2.9 Consensus size: 27
198370 ATCTATCAAT
*
198380 TATTA-ATTAA-TATTATATTTATTATA
1 TATTATATTAATTATAATATTTA-TATA
**
198406 TATTATAATT-ATATATAATAAATATATA
1 TATTAT-ATTAAT-TATAATATTTATATA
198434 -ATTATATTAATTATAATATTTATA
1 TATTATATTAATTATAATATTTATA
198458 ATAAGTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
26 19 0.45
27 8 0.19
28 7 0.17
29 8 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTATATTAATTATAATATTTATATA
Found at i:198478 original size:36 final size:36
Alignment explanation
Indices: 198404--198494 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 36
198394 ATATTTATTA
* *
198404 TATATTATAATTATATATAATAAATATATAATTATAT
1 TATATTATAA-TATTTATAATAAATATAAAATTATAT
*
198441 TA-ATTATAATATTTATAATAAGTA-AAAATTTAGTAT
1 TATATTATAATATTTATAATAAATATAAAA-TTA-TAT
*
198477 TATATTAT-TTATTTATAA
1 TATATTATAATATTTATAA
198495 AACATTATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
34 3 0.06
35 16 0.34
36 21 0.45
37 7 0.15
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (36 bp):
TATATTATAATATTTATAATAAATATAAAATTATAT
Found at i:198486 original size:32 final size:34
Alignment explanation
Indices: 198400--198488 Score: 94
Period size: 35 Copynumber: 2.6 Consensus size: 34
198390 TATTATATTT
* *
198400 ATTATA-TATTATAATTATATATAATAAATATATA
1 ATTATAGTATTAT-ATTATTTATAATAAATATAAA
* * *
198434 ATTATATTAATTATAATATTTATAATAAGTA-AAA
1 ATTATAGT-ATTATATTATTTATAATAAATATAAA
198468 ATT-TAGTATTATATTATTTAT
1 ATTATAGTATTATATTATTTAT
198489 TTATAAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
32 13 0.28
33 3 0.06
34 11 0.23
35 15 0.32
36 5 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (34 bp):
ATTATAGTATTATATTATTTATAATAAATATAAA
Found at i:198924 original size:16 final size:16
Alignment explanation
Indices: 198891--198924 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
198881 GTTATTCATG
*
198891 ATATTATATTGAATTA
1 ATATTATATTGAAATA
*
198907 ATATTATATTTAAATA
1 ATATTATATTGAAATA
198923 AT
1 AT
198925 TGTATAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
ATATTATATTGAAATA
Found at i:199003 original size:14 final size:14
Alignment explanation
Indices: 198973--199013 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
198963 TTAATTAAAC
198973 TAATAA-AA-TATT
1 TAATAATAATTATT
198985 T-ATAATAATTATT
1 TAATAATAATTATT
*
198998 TAATAATTATTATT
1 TAATAATAATTATT
199012 TA
1 TA
199014 TAAATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 4 0.16
12 3 0.12
13 5 0.20
14 13 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATAATAATTATT
Found at i:199611 original size:180 final size:178
Alignment explanation
Indices: 199170--200415 Score: 857
Period size: 180 Copynumber: 7.0 Consensus size: 178
199160 TTTTGTCATC
* * ** * * * * * * **
199170 AAATAATGCAAATTTAAAAATATTCCAAAACTTAATAACCAAAAAATTTTAAAAATAAATCTAAT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAA-GAAAAGATTTAAAAAATAAATTTGTT
* * ** * * * ** *
199235 TATCAAACCAATTCAAATAGTTAAAACTATATAAATGACTATCTATTTCAAATTGTTATGACC-T
65 TACCAAA-CAGTTCAAATAGTTATGACTATTTAAATAATTATCTA-TTCAAATCATTATAACCTT
* * ** ** *
199299 TTCTTTTGTCATAAAACAATTGTCTT--GTTTGTACAAGCTTATTCATATTA
128 TTGTTTTGTCATAAAACAATTGT-TTCAATTCATACAAGCTTATTCGGAATA
* * * *
199349 AAATAATACTAATTTCA-TAATATTTTAAAAATTAATAAG-TAAGTTATTAAAAAAATAAATTTA
1 AAATAATACTAATTT-ATTAATATTTCAAAAATTAATAAGAAAAG--ATTTAAAAAATAAATTTG
* * * * * * * * * *
199412 TCTATCGAATCATTTCAAATGGTTAAGATTATTAAAATAATTATATACTTCAAATCATTTTAACC
63 TTTA-CCAAACAGTTCAAATAGTTATGACTATTTAAATAATTATCTA-TTCAAATCATTATAACC
* * *
199477 ATTT-TTTAGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAGAATA
126 TTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCGGAATA
* * * ** *
199529 AATTACTACTAATTTATTAACATTTGGAAAATTAATAAGAAAGAGATTTAAAAAATAAATCTGTT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAA-AGATTTAAAAAATAAATTTGTT
* * * * * * ** *
199594 TGCCGAACAAGTTCAAATAGTTATTATTATTTCAACAATTGCCTATTTAGAA-CATTATAACCTT
65 TACCAAAC-AGTTCAAATAGTTATGACTATTTAAATAATTATCTATTCA-AATCATTATAACCTT
** * * * *
199658 TTAATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTAGAT-GGAATA
128 TTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTA-TTCGGAATA
** * *
199709 AAATAATACTAATTTATTAATATTTCCTAAATTAAT-A-AAAA-ATTTTAAAAATAAAATTGTTT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAAAGATTTAAAAAATAAATTTGTTT
* * * * *
199771 ACCAAATCAGTTAAAATAATTATGACCATTTGAATAATTATCTATTTCAAATCATTATGACCTTT
66 ACCAAA-CAGTTCAAATAGTTATGACTATTTAAATAATTATCTA-TTCAAATCATTATAACCTTT
* * * ** *
199836 TATTTTGTTATAATACAATTGTTT-TTTATCATACAAGCTTATTCGAAATA
129 TGTTTTGTCATAAAACAATTGTTTCAAT-TCATACAAGCTTATTCGGAATA
* * * *
199886 AAATAATATTAATTTATTAATATTTCAAAAA-TAATAGGTAACAGATTTAAATAATAAATTTGTT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-AAAAGATTTAAAAAATAAATTTGTT
* * * * **
199950 TACCAAACTAGTTCAAATAATTATGACTATTTGAACAATTATCAATCTCAAAT-AGTTA-AAATT
65 TACCAAAC-AGTTCAAATAGTTATGACTATTTAAATAATTATCTAT-TCAAATCA-TTATAACCT
* * *
200013 TTTGTTTTGTCGTAAAACAATTGTTTCTAA-TCATAAAAGCTTATTCGG-TTAA
127 TTTGTTTTGTCATAAAACAATTGTTTC-AATTCATACAAGCTTATTCGGAAT-A
* * * ***
200065 AAATAATACTAATTTAATAATATTTCAAAAATTAAT---AATAGATTTAAAAATTAAATACATTT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAAAGATTTAAAAAATAAATTTGTTT
* * * ** * *
200127 GCTAAACTAGTTCAAATAGTAAAAACAATTAAAATAATTATCTATTTCAAAT-AGTTCA-AACCT
66 ACCAAAC-AGTTCAAATAGTTATGACTATTTAAATAATTATCTA-TTCAAATCA-TT-ATAACCT
* * * * * *
200190 TTTGTTTAGTCATAAAATATTTGTTTC-ATGTCTTATAAGCTTATTTGGAATA
127 TTTGTTTTGTCATAAAACAATTGTTTCAAT-TCATACAAGCTTATTCGGAATA
* * * * **
200242 AAATAATCCAAATTTATGAACATTTGGAAAATTAATAAGCAAAAGATTTGAAAAAATAAATTTGT
1 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-AAAAGATTT-AAAAAATAAATTTGT
* * * * * * * *
200307 TTACCAAACAAGTTTAAAAAGTTATGACTATTT-TATCAATTATTTTTATAAAATCGTTATGACC
64 TTACCAAAC-AGTTCAAATAGTTATGACTATTTAAAT-AATTATCTAT-TCAAATCATTATAACC
* * *
200371 TTTTGTTTTGACATAAAACAATTGTTTCAATTCTTAAAAGCTTAT
126 TTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTAT
200416 CCAAAATAAA
Statistics
Matches: 835, Mismatches: 187, Indels: 87
0.75 0.17 0.08
Matches are distributed among these distances:
175 1 0.00
176 120 0.14
177 158 0.19
178 7 0.01
179 203 0.24
180 240 0.29
181 14 0.02
182 90 0.11
183 2 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.39
Consensus pattern (178 bp):
AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAAAAGATTTAAAAAATAAATTTGTTT
ACCAAACAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTCAAATCATTATAACCTTTTG
TTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCGGAATA
Found at i:199944 original size:356 final size:354
Alignment explanation
Indices: 199278--201981 Score: 1863
Period size: 356 Copynumber: 7.6 Consensus size: 354
199268 AATGACTATC
** * * * **
199278 TATTTCAAATTGTTATGACC-TTTCTTTTGTCATAAAACAATTGTCTTGTTTGTACAAGCTTATT
1 TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTATTCATACAAGCTTATT
* * * *
199342 -CATATTAAAATAATACTAATTTCA-TAATATTTTAAAAATTAATAAGTAAGTTATTAAAAAAAT
66 GGA-A-TAAAATAATACTAATTT-ATTAATATTTCAAAAATTAATAA--AA--AATTTAAAAAAT
* * * * * * ** * * ** * *
199405 AAATTTATCTATCGAA-TCATTTCAAATGGTTAAGATTATTAAAATAATTATATACTTCAAATCA
124 AAATATGTTTACCAAACT-AGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * ** * *
199469 TTTTAACCATTT-TTTAGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAGAATAAATT
188 TTATAACCTTTTGTTTTGTCATAAAACAATTGTTT-TGTTCATACAAGCTTATTCAAAATAAAAT
* * * * * *
199533 ACTACTAATTTATTAACATTTGGAAAATTAATAAGAAAGAGATTTAAAAAATAAATCTGTTTGCC
252 AATACTAATTTATTAATATTT-CAAAAATAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACC
* * * ***
199598 GAACAAGTTCAAATAGTTATTATTATTTCAACAATTGCC
316 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATT
* ** *
199637 TATTT-AGAA-CATTATAACCTTTTAATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTA
1 TATTTCA-AATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTA-TTCATACAAGCTTA
* ** *
199700 GATGGAATAAAATAATACTAATTTATTAATATTTCCTAAATTAATAAAAAATTTTAAAAATAAA-
64 -TTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAAT
* *
199764 ATTGTTTACCAAA-TCAGTTAAAATAATTATGACCATTTGAATAATTATCTATTTCAAATCATTA
128 A-TGTTTACCAAACT-AGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTA
* * * * * *
199828 TGACCTTTTATTTTGTTATAATACAATTGTTTTTTATCATACAAGCTTATTCGAAATAAAATAAT
191 TAACCTTTTGTTTTGTCATAAAACAATTGTTTTGT-TCATACAAGCTTATTCAAAATAAAATAAT
* * * * * *
199893 ATTAATTTATTAATATTTCAAAAATAATAGGTAACAGATTTAAATAATAAATTTGTTTACCAAAC
255 ACTAATTTATTAATATTTCAAAAATAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAAC
* * *
199958 TAGTTCAAATAATTATGACTATTTGAACAATTATC
320 AAGTTCAAATAGTTATGACTATTTGAACAATTATT
* * * ** * * *
199993 AATCTCAAAT-AGTTA-AAATTTTTGTTTTGTCGTAAAACAATTGTTTCTAATCATAAAAGCTTA
1 TATTTCAAATCA-TTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-TATTCATACAAGCTTA
* * * * *
200056 TTCGG-TTAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAATAGATTTAAAAATTAAA
64 TT-GGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAA
** * * * * ** * **
200120 TACATTTGCTAAACTAGTTCAAATAGTAAAAACAATTAAAATAATTATCTATTTCAAAT-AGTTC
127 TATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCA-TT-
* * * * * ***
200184 A-AACCTTTTGTTTAGTCATAAAATATTTGTTTCATG-TCTTATAAGCTTATTTGGAATAAAATA
190 ATAACCTTTTGTTTTGTCATAAAACAATTGTTT--TGTTCATACAAGCTTATTCAAAATAAAATA
* * * * * * * * *
200247 ATCCAAATTTATGAACATTTGGAAAATTAATAAGCAAAAGATTTGAAAAAATAAATTTGTTTACC
253 ATACTAATTTATTAATATTT-CAAAAATAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACC
* * * * *
200312 AAACAAGTTTAAAAAGTTATGACTATTTTATCAATTATT
316 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATT
* * * * * *
200351 T-TTATAAAATCGTTATGACCTTTTGTTTTGACATAAAACAATTGTTTCAATTCTTAAAAGCTTA
1 TATT-TCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-TATTCATACAAGCTTA
** * ** *
200415 -T---CCAAAAT-A-A--AA---A--GA-ATTT----AA-TAAGT-AGGAGTTTAAAAAAATAAA
64 TTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAA-TAAAAAATTT-AAAAAATAAA
* * * * * * * * * * * *
200460 TTTGTTTATCGAGCAAATTCAAATAGTTACGACTATTTAAACAATTGTCTATTTAAAATCATTAT
127 TATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTAT
* * * *
200525 GA-----TGTTTTGTCATAAAATAATTGTTTTAGTTCATACAAGCTTATTCAAAATAACATAATT
192 AACCTTTTGTTTTGTCATAAAACAATTGTTTT-GTTCATACAAGCTTATTCAAAATAAAATAATA
* * * * *
200585 CTAATTTATTAATATTCCAAAAATTAATAAGTAAGTGATTTAAAAAGTGAATCTATTTA-CGAA-
256 CTAATTTATTAATATTTCAAAAA-TAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAAC
* * *
200648 ATTAGTTCAAATAATTATG-GTCATTTCAACAATTATT
320 A--AGTTCAAATAGTTATGACT-ATTTGAACAATTATT
* * * * * * *
200685 TATTTCAAATCGTTATCACCTTTTGTTTCGTCATATAACAATTGTTTTTTTATCATACATGATTA
1 TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTTAT-TCATACAAGCTTA
* * * * * *
200750 TTTGAATTAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAGAGATTTAAAAAATGAAT
64 TTGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAAT
* * * * * * * * *
200815 CTATTTACCGAACTAGTTCAAATAGTTATGACTATTTCAACAATTCTATACTTCAAATCATTATA
128 ATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATA
* * *
200880 ACCTTTTGTTATGTCATAAAACAATTATTTTCTGTTCATACAAGCTTATTCAAAATAAAACAATA
193 ACCTTTTGTTTTGTCATAAAACAATT-GTTT-TGTTCATACAAGCTTATTCAAAATAAAATAATA
* * * * * * ***
200945 CTAATATAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAATATGTTTGTTGAAC
256 CTAATTTATTAATATTTCAAAAA-TAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAA-
* * *
201010 CAA-TTCAAACAGTTAAGACTATATGAACAATTATT
319 CAAGTTCAAATAGTTATGACTATTTGAACAATTATT
* * * * * *
201045 TATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAATAATT-TTCTCAATTCATGCTAGCTTT
1 TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTT-T-TATTCATACAAGC-TT
* * * * *
201109 TTTGAAAAAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAA
63 ATTGGAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAA--AA-A-ATTTAAAAAA
* ** * * * *
201173 TAATTATGTTTACGTAACCAGTTCAAAAAATTAT-ACTATTTGAACAATTATATATTTCAAATCA
123 TAAATATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * * *
201237 TTATTACTTTTTGTTTTGTCATACAACAAATT-TTTTGTCCATATAAGTTTATTCAGAATAAAGT
188 TTATAACCTTTTGTTTTGTCATAAAAC-AATTGTTTTGTTCATACAAGCTTATTCAAAATAAAAT
* * * * * * * *
201301 AATACTAATCTATTAATATTTCAAAAAT--TAA-TAAGTGATTTAGACAATAAATCTATGTATCA
252 AATACTAATTTATTAATATTTCAAAAATAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCG
* * * * *
201363 AACTAGTTTAAATAATTATAACTATTTGAGCAATTATT
317 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATT
* *
201401 TATTTCAAATCATTATGACTTTTTGTTTTG-CTGTAAAACAATTGTTTTTATTCATACAAGCTTA
1 TATTTCAAATCATTATGACCTTTTGTTTTGTC-ATAAAACAATTG-TTTTATTCATACAAGCTTA
* * ** * * *
201465 TTTGCATTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAGTAAAAATTT---TAA-A
64 -TTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A--AAAAATTTAAAAAATA
* * * * *
201526 AATATGTTTACCACACTAGATCAAATAATCATGACAATTTGAATAATTATCTATTTCAAATCGTT
125 AATATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATT
* * * * *
201591 ATAACTTTTTGATTTGTCATAAAAGAGTTGTTTTAGTTCATATAAGCTTATTCAAAATAAAATAA
190 ATAACCTTTTGTTTTGTCATAAAACAATTGTTTT-GTTCATACAAGCTTATTCAAAATAAAATAA
* * * * * * * *
201656 TATTTATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAATTTATTTATCGA
254 TACTAATTTATTAATATTTC-AAAAATAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGA
* * * *
201721 GCAAGTTCAAATAGTTATTACTATTTGAACAGTTATA
318 ACAAGTTCAAATAGTTATGACTATTTGAACAATTATT
* * * * *
201758 TATTTCAAATCTTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCCATTCACACAAGTTTAT
1 TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-TATTCATACAAGCTTA-
* *
201823 TTGGAATAAAATAATACTAATTTATTATTA-TTCTAAAAATTAATAAGTTAGATATTTAAAAAAT
64 TTGGAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAA---A-AAATTTAAAAAAT
* * * * * * * * * *
201887 AAATATGTTTACCGAACAAGTTTAAATAGTCATGTCCATTTGAACT-GTTATTTATTTCAAATCG
124 AAATATGTTTACCAAACTAGTTCAAATAATTATGACTATTTGAA-TAATTATCTATTTCAAATCA
* ** * * *
201951 TTATGATATTTTGTTTTATTATAAAATAATT
188 TTATAACCTTTTGTTTTGTCATAAAACAATT
201982 ATTCAGAATA
Statistics
Matches: 1837, Mismatches: 400, Indels: 213
0.75 0.16 0.09
Matches are distributed among these distances:
332 1 0.00
333 5 0.00
334 82 0.04
335 86 0.05
336 1 0.00
339 8 0.00
340 61 0.03
341 2 0.00
342 1 0.00
344 6 0.00
345 1 0.00
347 2 0.00
349 1 0.00
350 5 0.00
351 28 0.02
352 56 0.03
353 44 0.02
354 77 0.04
355 20 0.01
356 470 0.26
357 238 0.13
358 84 0.05
359 132 0.07
360 245 0.13
361 14 0.01
362 126 0.07
363 41 0.02
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (354 bp):
TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTATTCATACAAGCTTATT
GGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAATATG
TTTACCAAACTAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATAACC
TTTTGTTTTGTCATAAAACAATTGTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAAT
TTATTAATATTTCAAAAATAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACCGAACAAGTTC
AAATAGTTATGACTATTTGAACAATTATT
Found at i:200113 original size:19 final size:18
Alignment explanation
Indices: 200078--200118 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
200068 TAATACTAAT
200078 TTAATAATATTTCAAAAA
1 TTAATAATATTTCAAAAA
200096 TTAATAATAGATTT-AAAAA
1 TTAATAAT--ATTTCAAAAA
200115 TTAA
1 TTAA
200119 ATACATTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TTAATAATATTTCAAAAA
Found at i:200126 original size:17 final size:20
Alignment explanation
Indices: 200078--200126 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 20
200068 TAATACTAAT
200078 TTAATAAT--ATTTCAAAAA
1 TTAATAATACATTTCAAAAA
*
200096 TTAATAATAGATTT-AAAAA
1 TTAATAATACATTTCAAAAA
200115 TT-A-AATACATTT
1 TTAATAATACATTT
200127 GCTAAACTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 8 0.29
18 9 0.32
19 7 0.25
20 4 0.14
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (20 bp):
TTAATAATACATTTCAAAAA
Found at i:201833 original size:181 final size:179
Alignment explanation
Indices: 200432--201981 Score: 1263
Period size: 181 Copynumber: 8.7 Consensus size: 179
200422 TAAAAAGAAT
* * * * *
200432 TTAATAAGTAGGAG-TTTAAAAAAATAAATTTGTTTATCGAGCAAATTCAAATAGTTACGACTAT
1 TTAATAAGTAAGAGATTT-AAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTAT
* * * * *
200496 TTAAACAATTGTCTATTTAAAATCATTATGA----TGTTTTGTCATAAAATAATTGTTTTAGTTC
65 TTGAACAATTATTTATTTCAAATCATTATGACTTTTGTTTTGTCATAAAACAATTGTTTTA-TTC
* * *
200557 ATACAAGCTTATTCAAAATAACATAATTCTAATTTATTAATATTCCAAAAA
129 ATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * *
200608 TTAATAAGTAAGTGATTTAAAAAGTGAATCTATTTA-CGAA-ATTAGTTCAAATAATTATG-GTC
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACA--AGTTCAAATAGTTATGACT-
* * * * * *
200670 ATTTCAACAATTATTTATTTCAAATCGTTATCACCTTTTGTTTCGTCATATAACAATTGTTTTTT
63 ATTTGAACAATTATTTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATTG-TTTTA
* * ** * * *
200735 TATCATACATGATTATTTGAATTAAAATAATAATAATTTATTAATCTTTCAAAAA
126 T-TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * *
200790 -T--TAA-TAAGAGATTTAAAAAATGAATCTATTTACCGAACTAGTTCAAATAGTTATGACTATT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATT
* * * * * * * *
200851 TCAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTTCTGTT
66 TGAACAATTATTTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATT-GTTT-TATT
* * * *
200916 CATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCCAAAAA
128 CATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * *
200968 TTAATAACTAAGGGATTTAAAAAATAAATATGTTTGTTGAACCAA-TTCAAACAGTTAAGACTAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAA-CAAGTTCAAATAGTTATGACTAT
* * * * *
201032 ATGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAATAATT-TTCTCAAT
65 TTGAACAATTATTTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATTGTT-T-TAT
* * * * *
201096 TCATGCTAGCTTTTTTGAAAA-AAAATAA-AATGAATTTATTAATATTTCAAAAA
127 TCATACAAGC-TTATTCAAAATAAAATAATACT-AATTTATTAATATTTCAAAAA
* * * * *
201149 ATAATAAGTAAGAGATTTAAAAAATAATTATGTTTA-CGTAACCAGTTCAAAAAATTAT-ACTAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCG-AACAAGTTCAAATAGTTATGACTAT
* * * * *
201212 TTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATT-TTTTGTC
65 TTGAACAATTATTTATTTCAAATCATTATGAC-TTTTGTTTTGTCATAAAAC-AATTGTTTTATT
* * * * *
201276 CATATAAGTTTATTCAGAATAAAGTAATACTAATCTATTAATATTTCAAAAA
128 CATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * * * * *
201328 TTAATAAGT----GATTTAGACAATAAATCTATGTATCAAACTAGTTTAAATAATTATAACTATT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATT
* *
201389 TGAGCAATTATTTATTTCAAATCATTATGACTTTTTGTTTTG-CTGTAAAACAATTGTTTTTATT
66 TGAACAATTATTTATTTCAAATCATTATGAC-TTTTGTTTTGTC-ATAAAACAATTG-TTTTATT
*** * ** *
201453 CATACAAGCTTATTTGCATTAAAATAATACTAATTTATTAATATTTTGACAA
128 CATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * * * *
201505 TTAGTAAGTAA-AAATTT---TAA-AAATATGTTTA-CCACACTAGATCAAATAATCATGACAAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGA-ACAAGTTCAAATAGTTATGACTAT
* * * * * * *
201564 TTGAATAATTATCTATTTCAAATCGTTATAACTTTTTGATTTGTCATAAAAGAGTTGTTTTAGTT
65 TTGAACAATTATTTATTTCAAATCATTATGAC-TTTTGTTTTGTCATAAAACAATTGTTTTA-TT
* * * *
201629 CATATAAGCTTATTCAAAATAAAATAATATTTATTTATTAATATTTCTAAAA
128 CATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * *
201681 TTAATAAGTAAAAGATTTAAATAATAAATTTATTTATCGAGCAAGTTCAAATAGTTATTACTATT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATT
* * * *
201746 TGAACAGTTATATATTTCAAATCTTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCCATTC
66 TGAACAATTATTTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATTGTTT-TATTC
* * *** *
201811 ACACAAGTTTATTTGGAATAAAATAATACTAATTTATTATTA-TTCTAAAAA
129 ATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTC-AAAAA
* * * * * * *
201862 TTAATAAGTTAGATATTTAAAAAATAAATATGTTTACCGAACAAGTTTAAATAGTCATGTCCATT
1 TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATT
** * * * * *
201927 TGAACTGTTATTTATTTCAAATCGTTATGATATTTTGTTTTATTATAAAATAATT
66 TGAACAATTATTTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATT
201982 ATTCAGAATA
Statistics
Matches: 1095, Mismatches: 229, Indels: 95
0.77 0.16 0.07
Matches are distributed among these distances:
174 1 0.00
175 49 0.04
176 244 0.22
177 65 0.06
178 143 0.13
179 52 0.05
180 68 0.06
181 323 0.29
182 148 0.14
183 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (179 bp):
TTAATAAGTAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATT
TGAACAATTATTTATTTCAAATCATTATGACTTTTGTTTTGTCATAAAACAATTGTTTTATTCAT
ACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
Found at i:201869 original size:713 final size:718
Alignment explanation
Indices: 200527--201898 Score: 1609
Period size: 713 Copynumber: 1.9 Consensus size: 718
200517 ATCATTATGA
* * *
200527 TGTTTTGTCATAAAATAATTGTTTTAGTTCATACAAGCTTATTCAAAATAACATAATTCTAATTT
1 TGTTTTGTCATAAAATAATTGTTTTAGTCCATACAAGCTTATTCAAAATAACATAATACTAATCT
* * *
200592 ATTAATATTCCAAAAATTAATAAGTAAGTGATTTAAAAAGTGAATCTATTTACGAAATTAGTTCA
66 ATTAATATTCCAAAAATT-ATAAGTAAGTGATTTAAAAAGTAAATCTATGTACGAAACTAGTTCA
** * *
200657 AATAATTATGGTCATTTCAACAATTATTTATTTCAAATCGTTATCACCTTTTGTTTCGTCATATA
130 AATAATTATACTCATTTCAACAATTATTTATTTCAAATCATTATCACCTTTTGTTTCGTCATAAA
* * *
200722 ACAATTGTTTTTTTATCATACATGATTATTTGAATTAAAATAATAATAATTTATTAATCTTTCAA
195 ACAATTGTTTTTATATCATACAAGATTATTTGAATTAAAATAATAATAATTTATTAATATTTCAA
* * * * *
200787 AAATTAATAAGAGATTTAAAAAATGAATCTATTTACCGAACTAGTTCAAATAGTTATGACTATTT
260 AAATTAATAAGAAATTTAAAAAAT-AA-CTATTTACCGAACTAGATCAAATAATCATGACAATTT
* *
200852 CAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTTCTGTTC
323 CAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTTCAGTTC
**
200917 ATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCCAAAAATTAATAACTAAGGG
388 ATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCCAAAAATTAATAACTAAAAG
* * * *
200982 ATTTAAAAAATAAATATGTTTGTTGAACCAATTCAAACAGTTAAGACTATATGAACAATTATTTA
453 ATTTAAAAAATAAATATATTTATCGAACCAATTCAAACAGTTAAGACTATATGAACAATTATATA
* ** *
201047 TTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAATAATTTTCTCAATTCATGCTAGCTTTTTT
518 TTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAATTCACACAAGCTTTTTT
*
201112 GAAAAAAAATAAAATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAAT
583 GAAAAAAAATAAAATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAAA
201177 TATGTTTACGTAACCAGTTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATT
648 TATGTTTACGTAACCAGTTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATT
201242 ACTTTT
713 ACTTTT
* * *
201248 TGTTTTGTCATACAACA-AATT-TTTT-GTCCATATAAGTTTATTCAGAATAA-AGTAATACTAA
1 TGTTTTGTCATA-AA-ATAATTGTTTTAGTCCATACAAGCTTATTCAAAATAACA-TAATACTAA
* *
201309 TCTATTAATATTTCAAAAA-T-TAA-TAAGTGATTTAGACAA-TAAATCTATGTATC-AAACTAG
63 TCTATTAATATTCCAAAAATTATAAGTAAGTGATTTA-AAAAGTAAATCTATGTA-CGAAACTAG
* * * * * *
201369 TTTAAATAATTATAACT-ATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTGTTTTG-C
126 TTCAAATAATTAT-ACTCATTTCAACAATTATTTATTTCAAATCATTATCACCTTTTGTTTCGTC
* * * *
201432 TGTAAAACAATTGTTTTTAT-TCATACAAGCTTATTTGCATTAAAATAATACTAATTTATTAATA
190 -ATAAAACAATTGTTTTTATATCATACAAGATTATTTGAATTAAAATAATAATAATTTATTAATA
** * * * *
201496 TTTTGACAATTAGTAAGTAAAAATTTTAAAAAT-A-TGTTTACC-ACACTAGATCAAATAATCAT
254 TTTCAAAAATTAATAAG---AAATTTAAAAAATAACTATTTACCGA-ACTAGATCAAATAATCAT
* * * * * * * * *
201558 GACAATTTGAATAATTATCTATTTCAAATCGTTATAACTTTTTGATT-TGTCATAAAAGAGTTGT
315 GACAATTTCAACAATTATATACTTCAAATCATTATAACCTTTTG-TTATGTCATAAAACAATTAT
* * * * * * * *
201622 TTT-AGTTCATATAAGCTTATTCAAAATAAAATAATATTTATTTATTAATATTTCTAAAATTAAT
379 TTTCAGTTCATACAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCCAAAAATTAAT
* * * * * ** *
201686 AAGTAAAAGATTTAAATAATAAATTTATTTATCG-AGCAAGTTCAAATAGTTATTACTATTTGAA
444 AACTAAAAGATTTAAAAAATAAATATATTTATCGAACCAA-TTCAAACAGTTAAGACTATATGAA
* * * * *
201750 CAGTTATATATTTCAAATCTTTATGATCTTTTGTTTTGTCATAAAACAATTGTT-TCCATTCACA
508 CAATTATATATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCACA
* * * * * * *
201814 CAAG-TTTATTTGGAATAAAATAATACT-AATTTATTATTA-TTCTAAAAATTAATAAGTTAGAT
572 CAAGCTTT-TTTGAAAAAAAATAA-AATGAATTTATTAATATTTC-AAAAAATAATAAGTAAGAG
201876 ATTTAAAAAATAAATATGTTTAC
634 ATTTAAAAAATAAATATGTTTAC
201899 CGAACAAGTT
Statistics
Matches: 545, Mismatches: 89, Indels: 42
0.81 0.13 0.06
Matches are distributed among these distances:
712 10 0.02
713 216 0.40
714 79 0.14
715 55 0.10
716 95 0.17
717 8 0.01
718 11 0.02
719 2 0.00
720 46 0.08
721 16 0.03
722 6 0.01
723 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (718 bp):
TGTTTTGTCATAAAATAATTGTTTTAGTCCATACAAGCTTATTCAAAATAACATAATACTAATCT
ATTAATATTCCAAAAATTATAAGTAAGTGATTTAAAAAGTAAATCTATGTACGAAACTAGTTCAA
ATAATTATACTCATTTCAACAATTATTTATTTCAAATCATTATCACCTTTTGTTTCGTCATAAAA
CAATTGTTTTTATATCATACAAGATTATTTGAATTAAAATAATAATAATTTATTAATATTTCAAA
AATTAATAAGAAATTTAAAAAATAACTATTTACCGAACTAGATCAAATAATCATGACAATTTCAA
CAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTTCAGTTCATA
CAAGCTTATTCAAAATAAAACAATACTAATATAATAATATTCCAAAAATTAATAACTAAAAGATT
TAAAAAATAAATATATTTATCGAACCAATTCAAACAGTTAAGACTATATGAACAATTATATATTT
CAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAATTCACACAAGCTTTTTTGAA
AAAAAATAAAATGAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAATAAATAT
GTTTACGTAACCAGTTCAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATTACT
TTT
Found at i:202183 original size:336 final size:332
Alignment explanation
Indices: 201638--202306 Score: 740
Period size: 336 Copynumber: 2.0 Consensus size: 332
201628 TCATATAAGC
***
201638 TTATTCAAAATAAAATAATATTTATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAAT
1 TTATTCAAAATAAAATAATACCAATTTATTAATATTTCTAAAATTAATAAG----AGATTTAAAT
* * ** * * *
201703 AATAAATTTATTTATCGAGCAAGTTCAAATAGTTATTACTATTTGAACAGTTATATATTTCAAAT
62 AATAAATGTATTTATCGAGCAAGTTCAAATAATTAAGACTATTAGAACAATTATATATTCCAAAT
* * * * * *
201768 CTTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCCATTCACACAAGTTTATTTGGAATAAA
127 CTTTATAATCTTTTGTTTAGTCAAAAAACAATTGTTTCCATTCACACAAGCTTATTCGAAATAAA
* ** *
201833 ATAATACTAATTTATTATTATTCTA-AAAATTAATAAGTTAGATATTTAAAAAATAAATATGTTT
192 ATAATACCAATTTATTAAAATT-TAGAAAATTAATAAG--A-A-A-TTAAAAAA-AAATATATTT
* ** * * *
201897 ACCGAACAAGTTTAAATAGTCATGTCCATTTGAACTGTTATTTATTTCAAATCGTTATGATATTT
250 ACCGAACAAGTTTAAATAGTCATGACCATTTGAACAATTATCTATTTAAAATCGTTATGACATTT
* *
201962 TGTTTTATTATAAAATAA
315 TATTTTATCATAAAATAA
* *
201980 TTATTCAGAATAAAATAATACCAATTTATTACTATTT-TGAAAATTAATAAG-GATTTAAA-AAT
1 TTATTCAAAATAAAATAATACCAATTTATTAATATTTCT-AAAATTAATAAGAGATTTAAATAAT
* * * *
202042 AAATGTGTTTTTTGAAGC-AGTTCAAATAATTAAGACTATTAGAACAATTATCTATTCCAAAT-T
65 AAATGTATTTATCG-AGCAAGTTCAAATAATTAAGACTATTAGAACAATTATATATTCCAAATCT
* * * * *
202105 ATTCTAATCTTTTGTTTAGTCAAAAAATAATTGTTT-CAGTTCATACATGCTTATTCGAAATATA
129 -TTATAATCTTTTGTTTAGTCAAAAAACAATTGTTTCCA-TTCACACAAGCTTATTCGAAATAAA
* * * *
202169 GTAATACCAATTTATTAAAATTTAGAAAATTAATAAGAAATTAAAAAAAAATCTATTTATCGAAT
192 ATAATACCAATTTATTAAAATTTAGAAAATTAATAAGAAATTAAAAAAAAATATATTTACCGAAC
* * *
202234 AAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCGTTATGACCTTTTATTTTA
257 AAGTTTAAATAGTCATGACCATTTGAACAATTATCTATTTAAAATCGTTATGACATTTTATTTTA
202299 TCATAAAA
322 TCATAAAA
202307 CAACTATTTC
Statistics
Matches: 276, Mismatches: 46, Indels: 22
0.80 0.13 0.06
Matches are distributed among these distances:
330 75 0.27
331 8 0.03
332 1 0.00
333 1 0.00
334 1 0.00
335 5 0.02
336 129 0.47
337 11 0.04
341 1 0.00
342 44 0.16
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (332 bp):
TTATTCAAAATAAAATAATACCAATTTATTAATATTTCTAAAATTAATAAGAGATTTAAATAATA
AATGTATTTATCGAGCAAGTTCAAATAATTAAGACTATTAGAACAATTATATATTCCAAATCTTT
ATAATCTTTTGTTTAGTCAAAAAACAATTGTTTCCATTCACACAAGCTTATTCGAAATAAAATAA
TACCAATTTATTAAAATTTAGAAAATTAATAAGAAATTAAAAAAAAATATATTTACCGAACAAGT
TTAAATAGTCATGACCATTTGAACAATTATCTATTTAAAATCGTTATGACATTTTATTTTATCAT
AAAATAA
Found at i:203101 original size:43 final size:43
Alignment explanation
Indices: 203040--203127 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
203030 GAAAATTAAG
203040 AAGTAAGAAATTTAAAAAGTAAAACTGTTTACTAAACCAGTTC
1 AAGTAAGAAATTTAAAAAGTAAAACTGTTTACTAAACCAGTTC
*
203083 AAGTAAGAAATTTAAAAAGTAAAATTGTTTACTAAACCAGTTC
1 AAGTAAGAAATTTAAAAAGTAAAACTGTTTACTAAACCAGTTC
203126 AA
1 AA
203128 TTAGTTATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.28
Consensus pattern (43 bp):
AAGTAAGAAATTTAAAAAGTAAAACTGTTTACTAAACCAGTTC
Found at i:203347 original size:19 final size:19
Alignment explanation
Indices: 203323--203371 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
203313 TTATGACCTT
*
203323 TTGTTTTATCACAAAATAA
1 TTGTTTTATCACAAAACAA
*
203342 TTGTTTCATCACAAAACAA
1 TTGTTTTATCACAAAACAA
203361 TTGTTTCTATC
1 TTGTTT-TATC
203372 CGTACTAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 23 0.88
20 3 0.12
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (19 bp):
TTGTTTTATCACAAAACAA
Found at i:204150 original size:17 final size:18
Alignment explanation
Indices: 204119--204160 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
204109 CACAAATATT
*
204119 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
204137 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
204154 AACTATT
1 AATTATT
204161 TGTTATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:206887 original size:21 final size:21
Alignment explanation
Indices: 206862--207180 Score: 254
Period size: 21 Copynumber: 14.5 Consensus size: 21
206852 GGTTTCACAG
*
206862 CTCAAAAATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
*
206883 CTCAAAGATTCTCATTTAAAAA
1 CTCAAAGATTCTCATTT-GAAA
206905 CTCAAAGATTCTCATTTGAAA
1 CTCAAAGATTCTCATTTGAAA
* *
206926 CTTAAACATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTG-AAA
*
206948 CTCAAAAATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
*
206970 TTCAAAGATTCTCATTT-AAGA
1 CTCAAAGATTCTCATTTGAA-A
* *
206991 CTCATAGATTCTCATTTAAAGA
1 CTCAAAGATTCTCATTTGAA-A
* * *
207013 TTTTTTATAGATTCTCATTT-AAGA
1 ---CTCAAAGATTCTCATTTGAA-A
*
207037 CTCAAAGATTCTCATTTAAAA
1 CTCAAAGATTCTCATTTGAAA
207058 CTCAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAA-A
* * *
207080 TTTTTTTATAGATTCTCATTT-AAGA
1 ----CTCAAAGATTCTCATTTGAA-A
*
207105 CTCAAAGATTCTCATTTGAGATTT
1 CTCAAAGATTCTCATTTGA-A--A
* *
207129 CTTAAAGATTCTCATTT-ATGA
1 CTCAAAGATTCTCATTTGA-AA
207150 CT-AAAGATTCTCATTT-AAGA
1 CTCAAAGATTCTCATTTGAA-A
207170 CTCAAAGATTC
1 CTCAAAGATTC
207181 ATTTGAGGAT
Statistics
Matches: 250, Mismatches: 30, Indels: 36
0.79 0.09 0.11
Matches are distributed among these distances:
20 18 0.07
21 114 0.46
22 63 0.25
23 2 0.01
24 20 0.08
25 19 0.08
26 14 0.06
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.38
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:206923 original size:43 final size:42
Alignment explanation
Indices: 206862--207180 Score: 293
Period size: 43 Copynumber: 7.3 Consensus size: 42
206852 GGTTTCACAG
* *
206862 CTCAAAAATTCTCATTTGAAACTCAAAGATTCTCATTTAAAAA
1 CTCAAAGATTCTCATTTGAAACTCAAAGATTCTCATTT-AAGA
* * *
206905 CTCAAAGATTCTCATTTGAAACTTAAACATTCTCATTTGAAAA
1 CTCAAAGATTCTCATTTGAAACTCAAAGATTCTCATTT-AAGA
* *
206948 CTCAAAAATTCTCATTTGAAGATTCAAAGATTCTCATTTAAGA
1 CTCAAAGATTCTCATTTGAA-ACTCAAAGATTCTCATTTAAGA
* * * * *
206991 CTCATAGATTCTCATTTAAAGATTTTTTATAGATTCTCATTTAAGA
1 CTCAAAGATTCTCATTTGAA-A---CTCAAAGATTCTCATTTAAGA
*
207037 CTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGA
1 CTCAAAGATTCTCATTTGAAACTCAAAGATTCTCATTT-AAGA
* * * *
207080 TTTTTTTATAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAGA
1 ----CTCAAAGATTCTCATTTGAA-ACTCAAAGATTCTCATTTAAGA
* *
207126 TTTCTTAAAGATTCTCATTT-ATGACT-AAAGATTCTCATTTAAGA
1 ---CTCAAAGATTCTCATTTGA-AACTCAAAGATTCTCATTTAAGA
207170 CTCAAAGATTC
1 CTCAAAGATTC
207181 ATTTGAGGAT
Statistics
Matches: 238, Mismatches: 27, Indels: 24
0.82 0.09 0.08
Matches are distributed among these distances:
41 10 0.04
42 14 0.06
43 84 0.35
44 32 0.13
45 23 0.10
46 43 0.18
47 32 0.13
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.38
Consensus pattern (42 bp):
CTCAAAGATTCTCATTTGAAACTCAAAGATTCTCATTTAAGA
Found at i:206975 original size:65 final size:65
Alignment explanation
Indices: 206862--207212 Score: 306
Period size: 65 Copynumber: 5.3 Consensus size: 65
206852 GGTTTCACAG
* *
206862 CTCAAAAATTCTCATTTG-AAACTCAAAGATTCTCATTTAAAAACTCAAAGATTCTCATTTGAA-
1 CTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAT
206925 A
65 A
* * * * *
206926 CTTAAACATTCTCATTTGAAAACTCAAAAATTCTCATTTGAAGATTCAAAGATTCTCATTT-AAG
1 CTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAT
206990 A
65 A
* * * *
206991 CTCATAGATTCTCATTT-AAAGATTTTTTATAGATTCTCATTTAAGACTCAAAGATTCTCATTT-
1 CTCAAAGATTCTCATTTGAAA-A---CTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTG
*
207054 AAAA
62 AATA
** * *
207058 CTCAAAGATTCTCATTTGAAGATTTTTTTATAGATTCTCATTTAAGACTCAAAGATTCTCATTTG
1 CTCAAAGATTCTCATTTGAA-A---ACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTG
*
207123 AGATTT
62 A-A-TA
* **
207129 CTTAAAGATTCTCATTT-ATGACT-AAAGATTCTCATTTAAGACTCAAAGA-T-TCATTTGAGGA
1 CTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA--A
*
207190 TTT
64 -TA
*
207193 CTTAAAGATTCTCATTTGAA
1 CTCAAAGATTCTCATTTGAA
207213 GATTTATTAA
Statistics
Matches: 245, Mismatches: 27, Indels: 29
0.81 0.09 0.10
Matches are distributed among these distances:
63 8 0.03
64 44 0.18
65 80 0.33
66 1 0.00
67 39 0.16
68 53 0.22
69 2 0.01
70 2 0.01
71 16 0.07
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (65 bp):
CTCAAAGATTCTCATTTGAAAACTCAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGAATA
Found at i:207033 original size:14 final size:14
Alignment explanation
Indices: 206994--207033 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
206984 TTTAAGACTC
206994 ATAGATTCTCATTT
1 ATAGATTCTCATTT
*
207008 AAAGATT-T--TTT
1 ATAGATTCTCATTT
207019 ATAGATTCTCATTT
1 ATAGATTCTCATTT
207033 A
1 A
207034 AGACTCAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 6
0.72 0.07 0.21
Matches are distributed among these distances:
11 9 0.43
12 1 0.05
13 1 0.05
14 10 0.48
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (14 bp):
ATAGATTCTCATTT
Found at i:207093 original size:68 final size:68
Alignment explanation
Indices: 206888--207121 Score: 298
Period size: 68 Copynumber: 3.5 Consensus size: 68
206878 TGAAACTCAA
* * * * **
206888 AGATTCTCATTTAAAAACTCAAAGATTCTCATTTGAAACTTAAACATTCTCATTTGAA-A--ACT
1 AGATTCTCATTTAAAGACTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGATTTTT
* *
206950 CAA
66 TAT
* * * * * *
206953 AAATTCTCATTTGAAGATTCAAAGATTCTCATTTAAGACTCATAGATTCTCATTTAAAGATTTTT
1 AGATTCTCATTTAAAGACTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGATTTTT
207018 TAT
66 TAT
207021 AGATTCTCATTT-AAGACTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGATTTTT
1 AGATTCTCATTTAAAGACTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGA-TTTT
207085 TTAT
65 TTAT
207089 AGATTCTCATTT-AAGACTCAAAGATTCTCATTT
1 AGATTCTCATTTAAAGACTCAAAGATTCTCATTT
207122 GAGATTTCTT
Statistics
Matches: 146, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
65 48 0.33
66 1 0.01
67 43 0.29
68 54 0.37
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (68 bp):
AGATTCTCATTTAAAGACTCAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAGATTTTT
TAT
Found at i:207894 original size:49 final size:49
Alignment explanation
Indices: 207800--207894 Score: 129
Period size: 49 Copynumber: 1.9 Consensus size: 49
207790 TTTTATTTGG
* * *
207800 ATTTCTAAATTTTCCACCATTTGGGTCAATTTAGAAATTTTTTTTTGAA
1 ATTTCTAAATTTTACACCATTTGGGCCAATTTAGAAATTTCTTTTTGAA
**
207849 ATTTCTAAATTTTACACCATTTGGGCCTTCTTTAGAAA-TTCTTTTT
1 ATTTCTAAATTTTACACCATTTGGGCC-AATTTAGAAATTTCTTTTT
207895 ATTTTTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
49 32 0.80
50 8 0.20
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.49
Consensus pattern (49 bp):
ATTTCTAAATTTTACACCATTTGGGCCAATTTAGAAATTTCTTTTTGAA
Found at i:208613 original size:15 final size:16
Alignment explanation
Indices: 208586--208629 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
208576 ATGTTTAGTT
* *
208586 ATAATTAATAATATTA
1 ATAATTTATAATAATA
*
208602 TTAATTTA-AATAATA
1 ATAATTTATAATAATA
208617 ATAATTTATAATA
1 ATAATTTATAATA
208630 CATGTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTTATAATAATA
Found at i:208661 original size:9 final size:10
Alignment explanation
Indices: 208647--208679 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
208637 TAACCTAAAG
208647 TTATAATTA-
1 TTATAATTAT
208656 TTATAATTAT
1 TTATAATTAT
208666 TTATAA-TAT
1 TTATAATTAT
208675 TTATA
1 TTATA
208680 TATAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTATAATTAT
Found at i:208843 original size:21 final size:21
Alignment explanation
Indices: 208797--208845 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
208787 TTTTAATAAT
* *
208797 TATATGATTAATATATTAAAG
1 TATATAATAAATATATTAAAG
*
208818 CATATAATAAATATAATTAAA-
1 TATATAATAAATAT-ATTAAAG
208839 TATATAA
1 TATATAA
208846 ATAATAGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (21 bp):
TATATAATAAATATATTAAAG
Found at i:208851 original size:21 final size:20
Alignment explanation
Indices: 208805--208851 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
208795 ATTATATGAT
208805 TAATATATTAAAGCATATAA
1 TAATATATTAAAGCATATAA
*
208825 TAAATATAATTAAA-TATATAAA
1 T-AATAT-ATTAAAGCATAT-AA
208847 TAATA
1 TAATA
208852 GATAAAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TAATATATTAAAGCATATAA
Found at i:208886 original size:19 final size:18
Alignment explanation
Indices: 208864--208902 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
208854 TAAAATACTA
*
208864 TAATATAGTATCTTCTTAT
1 TAATATAGTAT-TTATTAT
208883 TAATATAGTATTTATTAT
1 TAATATAGTATTTATTAT
208901 TA
1 TA
208903 CACTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
TAATATAGTATTTATTAT
Found at i:208933 original size:21 final size:20
Alignment explanation
Indices: 208907--208950 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
208897 TTATTACACT
*
208907 TAATTAA-TATTATTTTAATTA
1 TAATTAACTA-TATTTGAA-TA
208928 TAATTAACTATATTTGAATA
1 TAATTAACTATATTTGAATA
208948 TAA
1 TAA
208951 ATATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 5 0.24
21 14 0.67
22 2 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATTAACTATATTTGAATA
Found at i:209029 original size:15 final size:15
Alignment explanation
Indices: 208989--209031 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
208979 TTAAGATAAT
*
208989 TATATTATTTA-TAA
1 TATATTATTAATTAA
209003 TATATT-TATAATTAA
1 TATATTAT-TAATTAA
209018 TATATTATTAATTA
1 TATATTATTAATTA
209032 TAGTAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 8 0.32
15 15 0.60
16 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATATTATTAATTAA
Found at i:209033 original size:27 final size:29
Alignment explanation
Indices: 208989--209047 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 29
208979 TTAAGATAAT
* * *
208989 TATATTATTTATAATATATTTATAATTAA
1 TATATTATTTATAATATAGTAAAAATTAA
*
209018 TATATTA-TTA-ATTATAGTAAAAATTAA
1 TATATTATTTATAATATAGTAAAAATTAA
209045 TAT
1 TAT
209048 TTAAATTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 16 0.62
28 3 0.12
29 7 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (29 bp):
TATATTATTTATAATATAGTAAAAATTAA
Found at i:209132 original size:19 final size:17
Alignment explanation
Indices: 209105--209171 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 17
209095 TAATTAATAC
209105 AATTAATTTAACTACTAAT
1 AATTAATTTAA-TA-TAAT
*
209124 AATTTATTTAATATAAT
1 AATTAATTTAATATAAT
*
209141 AATT-A--TAATATACT
1 AATTAATTTAATATAAT
*
209155 ATTTAATTT-ATATAAT
1 AATTAATTTAATATAAT
209171 A
1 A
209172 TAATTATATG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
14 11 0.27
15 1 0.02
16 8 0.20
17 9 0.22
18 2 0.05
19 10 0.24
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (17 bp):
AATTAATTTAATATAAT
Done.