genome.fa.s37.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167862.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70801

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400--1458	16	3.6	16	77	11	57	16	5	28	49	1.67
1405--1499	32	3.1	31	85	7	115	17	2	32	47	1.60
1430--1499	7	9.4	7	71	17	52	17	0	34	48	1.47
1409--1499	16	6.0	15	71	12	78	17	2	31	48	1.59
1728--1753	3	8.7	3	100	0	52	69	0	0	30	0.89
2602--2635	14	2.5	13	95	4	59	2	0	8	88	0.62
3023--3074	3	17.3	3	95	0	95	32	1	0	65	1.04
3402--3484	22	3.8	20	75	12	67	36	20	18	25	1.95
3294--3595	153	2.0	154	88	4	450	38	18	19	23	1.93
3655--3771	22	5.4	22	72	15	100	33	21	19	25	1.97
3448--3705	109	2.4	109	84	2	338	38	18	20	22	1.93
3259--3734	262	1.8	264	83	2	645	36	19	20	22	1.95
3666--3790	43	2.9	43	86	0	151	32	20	20	25	1.97
3749--4122	112	3.4	110	84	5	461	37	18	21	22	1.94
3451--4386	417	2.3	415	89	2	1421	37	18	20	23	1.94
4071--4200	22	6.0	22	75	10	106	29	18	24	27	1.98
4100--4208	21	5.1	21	73	12	96	27	19	25	27	1.99
4078--4208	43	3.0	43	90	0	208	28	19	25	27	1.98
4171--4386	109	2.0	110	89	1	335	40	18	18	22	1.91
4385--4449	22	3.0	22	69	24	57	27	18	27	26	1.98
5125--5765	33	19.5	33	85	4	805	34	16	19	29	1.94
6609--6659	24	2.1	24	81	0	57	1	17	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7023--7061	3	13.0	3	84	10	53	28	0	2	69	1.02
7758--7795	20	1.9	20	88	0	58	23	23	21	31	1.98
7757--7801	20	2.3	19	81	11	54	22	24	22	31	1.99
8198--8290	35	2.6	36	75	14	95	16	10	2	70	1.24
8356--8389	15	2.3	15	89	0	50	64	5	0	29	1.17
8401--8614	61	3.5	60	92	1	347	45	8	13	32	1.74
12524--12566	8	5.2	8	80	5	50	83	0	16	0	0.64
12522--12547	11	2.4	11	100	0	52	92	0	7	0	0.39
12525--12592	18	3.8	18	74	1	66	79	0	17	2	0.86
12524--12574	18	2.7	19	84	6	68	82	0	17	0	0.67
12521--12566	11	4.3	11	81	10	51	82	0	17	0	0.67
13830--14284	41	11.1	41	90	6	710	22	18	24	34	1.96
14291--14391	38	2.7	38	90	6	161	92	6	0	0	0.44
14291--14391	1	101.0	1	84	0	130	92	6	0	0	0.44
14582--14707	3	41.3	3	71	23	63	32	0	3	63	1.13
15189--15255	31	2.2	31	88	0	98	23	22	23	29	1.99
15311--15349	20	2.0	20	85	5	53	23	25	20	30	1.98
15649--15700	1	52.0	1	78	0	50	7	1	1	88	0.66
15661--15707	24	1.9	25	86	4	69	12	2	2	82	0.84
15720--15811	35	2.6	36	75	13	93	16	10	2	70	1.25
15824--16238	59	7.1	57	88	7	561	46	8	13	32	1.72
15898--15990	27	3.3	27	63	14	69	43	5	16	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23514--23604	16	6.0	16	72	10	75	18	2	30	48	1.60
23535--23604	7	9.4	7	73	17	61	17	0	34	48	1.47
23837--23874	3	12.7	3	100	0	76	68	0	0	31	0.90
24701--24738	12	2.9	14	81	18	55	0	0	13	86	0.56
24704--24738	18	2.0	17	94	5	61	0	0	14	85	0.59
24984--25036	23	2.4	21	78	12	52	9	9	52	28	1.64
25121--25160	3	13.0	3	89	5	62	32	0	2	65	1.06
25328--25396	24	2.9	24	100	0	138	47	4	4	43	1.42
25328--25423	48	2.0	48	83	2	120	43	5	3	47	1.41
29627--29700	25	3.0	25	76	4	60	77	9	2	10	1.10
29639--29701	32	2.0	31	90	3	99	77	7	1	12	1.05
29638--29700	18	3.7	18	71	16	62	79	7	1	11	1.00
29949--30095	41	3.6	41	90	0	204	40	17	17	25	1.90
31164--31578	59	6.9	60	84	9	492	33	12	7	45	1.71
31604--31681	6	13.8	6	71	12	58	78	1	6	14	1.01
31596--31766	17	10.1	17	69	14	81	75	2	4	16	1.10
31603--31680	27	2.8	29	78	20	85	78	1	6	14	1.01
31707--31765	8	7.4	8	76	14	59	81	1	3	13	0.90
31699--31765	26	2.5	28	83	9	79	77	2	2	16	1.01
31715--31765	13	3.8	13	80	19	52	82	1	1	13	0.85
31617--31766	40	3.8	39	72	18	121	76	3	4	16	1.08
33025--33084	13	5.0	12	70	13	52	3	3	10	83	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33025--33064	21	1.9	21	90	10	64	0	0	12	87	0.54
33026--33062	10	3.9	9	89	10	56	0	0	13	86	0.57
33092--33383	41	7.1	41	89	4	419	35	22	18	23	1.95
34625--34667	16	2.7	16	89	7	61	2	6	0	90	0.52
34609--34651	8	5.4	8	85	0	50	4	11	0	83	0.78
34627--34668	21	2.0	21	90	0	66	2	9	0	88	0.61
34625--34667	1	43.0	1	80	0	50	2	6	0	90	0.52
38531--38863	58	5.7	58	85	6	469	34	13	7	44	1.72
38890--39066	5	32.8	5	67	22	67	75	3	3	16	1.09
38900--38994	22	4.3	22	71	20	63	76	1	5	16	1.02
38891--38978	28	3.1	28	78	19	94	77	1	5	15	1.02
39577--39633	26	2.2	27	81	6	64	38	17	7	36	1.77
40142--40177	9	3.9	10	89	10	51	66	5	0	27	1.13
40241--40279	21	1.9	21	89	5	62	15	28	35	20	1.93
41380--41469	8	10.6	8	70	22	51	4	17	0	77	0.92
41398--41458	21	3.0	20	75	15	61	6	14	0	78	0.94
41439--41469	9	3.6	9	95	4	55	0	19	0	80	0.71
47815--47931	25	4.3	27	66	23	82	26	5	0	66	1.20
47790--47891	7	15.4	7	70	19	60	25	3	0	69	1.12
47821--47944	16	7.6	16	76	8	92	24	6	0	68	1.18
47831--47923	33	2.8	34	76	15	95	23	7	1	67	1.22
48714--48839	21	5.9	20	69	14	83	20	4	1	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48782--48839	27	2.2	27	84	3	73	17	5	0	77	0.94
48885--49039	79	1.9	81	88	10	237	40	10	12	36	1.78
48884--49062	81	2.2	78	82	11	218	40	11	11	35	1.78
54310--54363	22	2.5	22	84	6	65	37	9	18	35	1.83
54548--54629	43	1.9	42	90	7	130	37	9	15	36	1.81
54922--55360	83	5.3	82	82	7	453	27	15	20	36	1.93
54922--55360	41	10.6	41	83	4	474	27	15	20	36	1.93
55355--55412	24	2.4	24	88	0	89	32	17	22	27	1.96
55314--55444	66	2.0	65	89	1	199	29	15	21	34	1.94
55272--55486	107	2.0	107	92	3	362	28	16	20	35	1.94
55380--55578	42	4.7	41	88	6	256	25	16	21	36	1.94
55594--55636	11	3.8	12	90	3	63	83	16	0	0	0.64
55870--55990	4	30.8	4	70	14	74	23	4	0	71	1.09
55871--55990	27	4.5	25	74	20	86	24	4	0	70	1.10
55876--55956	31	2.7	30	83	9	103	24	3	0	71	1.02
56299--56373	31	2.4	31	86	4	107	17	17	20	45	1.86
56505--56541	14	2.4	16	82	13	51	51	0	48	0	1.00
56760--56784	7	3.6	7	100	0	50	12	12	0	76	1.04
56756--56910	6	24.7	6	69	18	68	20	3	1	74	1.05
56756--56800	14	3.4	13	80	14	56	11	6	0	82	0.84
56784--56847	28	2.3	28	86	5	85	26	0	0	73	0.84
56782--56847	4	17.5	4	84	3	68	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56782--56848	24	2.7	26	84	8	88	26	0	0	73	0.84
56865--56905	21	1.9	22	95	5	75	14	4	0	80	0.87
56863--56915	27	2.0	26	96	3	97	15	5	0	79	0.91
56922--57449	60	8.8	58	78	8	492	42	6	12	39	1.68
56922--57449	121	4.4	119	84	8	633	42	6	12	39	1.68
63593--63674	13	6.4	12	71	24	53	75	6	2	15	1.10
63591--63673	7	11.6	7	71	13	62	77	6	2	14	1.07
63591--63673	34	2.3	37	85	8	118	77	6	2	14	1.07

Tables:   1

The End!