genome.fa.s372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168197.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27032

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158--214	22	2.8	20	75	17	62	42	1	3	52	1.28
697--736	19	2.2	19	86	4	55	45	0	5	50	1.23
826--865	19	2.1	19	90	9	64	55	0	0	45	0.99
2324--2428	19	5.6	19	70	27	82	51	1	1	44	1.23
2325--2375	20	3.1	16	75	24	52	56	1	0	41	1.10
2323--2397	23	3.5	22	81	12	77	50	1	1	46	1.18
2540--2586	23	2.0	23	83	0	58	51	0	0	48	1.00
3054--3200	73	2.0	73	87	7	210	37	9	7	45	1.65
4228--4269	20	2.2	20	82	4	50	50	0	2	47	1.14
4365--4395	16	1.9	16	93	0	53	41	0	0	58	0.98
4372--4424	19	2.6	20	76	8	54	37	0	3	58	1.16
4464--4502	17	2.3	16	86	8	51	48	2	2	46	1.29
4782--4850	18	4.2	16	71	28	56	49	0	0	50	1.00
4781--4845	30	2.1	32	91	8	107	47	0	0	52	1.00
4781--4845	32	2.1	30	86	13	87	47	0	0	52	1.00
4786--4862	14	5.2	14	70	25	52	49	0	0	50	1.00
4818--4856	20	2.0	20	90	10	62	51	0	0	48	1.00
5455--5483	14	2.0	15	93	6	51	44	6	0	48	1.29
6283--6326	21	2.1	21	91	8	72	59	0	0	40	0.98
6281--6351	25	2.8	25	80	12	83	57	1	1	39	1.16
6281--6361	25	3.1	28	81	13	75	56	1	2	39	1.20
6438--6485	22	2.2	23	81	7	55	52	6	0	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6655--6693	21	1.9	20	89	5	60	48	0	2	48	1.15
6677--6746	25	2.7	25	82	10	70	45	2	2	48	1.32
6770--6808	20	2.0	20	85	10	53	33	0	7	58	1.26
7839--7905	34	2.0	34	82	5	82	40	1	1	56	1.17
7862--7967	19	5.3	19	70	20	72	42	2	1	52	1.26
8111--8181	19	3.5	19	73	14	61	52	0	2	45	1.15
8639--8686	25	1.9	25	82	0	60	45	0	4	50	1.21
9553--9679	52	2.4	54	86	4	186	27	16	10	45	1.79
11607--11650	15	2.8	16	79	6	54	54	0	0	45	0.99
11668--11700	9	3.5	10	92	8	52	42	0	0	57	0.98
11828--11894	23	3.0	22	77	16	66	59	2	2	34	1.28
12101--12135	17	1.9	19	88	11	56	45	5	0	48	1.26
12249--12293	20	2.4	18	82	13	63	48	0	6	44	1.29
12253--12290	20	1.9	20	94	0	67	47	0	7	44	1.32
12402--12464	24	2.6	23	78	16	65	52	1	1	44	1.20
13319--13357	19	2.1	18	90	4	60	56	0	0	43	0.99
13675--13801	11	11.5	11	67	14	64	54	0	3	41	1.22
13675--13752	27	3.0	25	71	15	77	55	0	1	43	1.08
13702--13743	18	2.3	18	80	8	50	50	0	2	47	1.14
14020--14060	20	2.0	21	86	13	59	43	2	0	53	1.13
16133--16351	120	1.8	121	82	3	280	45	9	11	33	1.73
16291--16989	180	3.9	180	86	4	872	41	9	10	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334--17384	23	2.2	23	82	6	59	39	3	1	54	1.30
17680--17730	18	2.7	19	79	11	52	50	3	3	41	1.39
17836--17884	13	3.6	14	77	17	50	48	0	2	48	1.12
17947--18010	17	3.8	17	70	10	51	50	0	0	50	1.00
17974--17998	13	1.9	13	100	0	50	48	0	0	52	1.00
18005--18063	21	2.7	21	84	5	73	45	5	3	45	1.42
18046--18091	17	2.8	16	78	15	58	52	0	4	43	1.21
18153--18216	20	3.3	19	76	20	60	50	4	1	43	1.32
18317--18350	13	2.6	13	90	0	50	52	2	0	44	1.16
18292--18365	26	2.7	27	76	12	71	44	4	1	50	1.29
18575--18628	19	3.0	19	79	15	62	37	3	0	59	1.15
18605--18678	27	2.6	28	75	10	71	41	4	0	54	1.19
18748--18843	45	2.1	45	83	11	117	51	2	0	46	1.12
18872--18940	36	1.9	36	82	11	88	55	1	2	40	1.24
19856--19955	13	7.3	13	69	18	53	48	0	0	52	1.00
19826--19961	22	6.2	21	69	21	68	44	0	0	54	1.05
20369--20466	19	4.9	19	68	15	65	48	2	1	47	1.19
20572--20607	18	2.0	19	89	10	58	47	5	0	47	1.25
21141--21221	28	3.0	27	78	8	67	55	3	1	39	1.25
21264--21321	8	7.5	8	77	13	59	55	1	0	43	1.10
21315--21347	15	2.1	16	88	5	50	45	0	3	51	1.16
21381--21434	24	2.2	24	78	12	58	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22649--22711	16	4.0	15	78	13	56	46	3	0	50	1.17
23170--23216	20	2.4	19	80	16	51	42	0	4	53	1.20
23503--23556	28	1.9	27	85	7	72	38	1	3	55	1.28
23607--23631	13	1.9	13	100	0	50	40	0	0	60	0.97
24241--24284	16	3.0	16	81	18	60	54	4	0	40	1.21
24569--24617	13	3.7	13	75	5	53	44	0	0	55	0.99
24575--24622	20	2.6	17	87	12	69	45	0	0	54	0.99
24582--24643	26	2.4	27	76	20	69	48	0	1	50	1.10
24583--24651	24	2.7	25	78	17	70	50	0	2	46	1.16
24663--24700	14	2.7	14	84	8	51	39	2	0	57	1.12
26539--26592	24	2.2	24	78	12	58	55	0	1	42	1.10
26580--26640	25	2.5	24	76	7	59	52	1	3	42	1.27

Tables:   1

The End!