Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168202.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_438, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26870
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:5691 original size:13 final size:13

Alignment explanation


    Indices: 5673--5697  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       5663 GTCTAAAGAA

                         
       5673 GGGTAAAAGCCAT
          1 GGGTAAAAGCCAT

                        
       5686 GGGTAAAAGCCA
          1 GGGTAAAAGCCA

       5698 AGTGAAATAG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.16, G:0.32, T:0.12


Consensus pattern (13 bp):   
GGGTAAAAGCCAT

Found at i:11415 original size:44 final size:43

Alignment explanation


    Indices: 11354--11463  Score: 139
    Period size: 44  Copynumber: 2.5  Consensus size: 43

      11344 TTAGCCCTTG

                *                                       
      11354 GTGCGAGCACATGCCTCGATCAGTATTGGCATAATCTAGACCTA
          1 GTGCAAGCACATGCCTCGATCAGTATTGGCATAATCTAGA-CTA

               ***              * *                 * *
      11398 GTGTGGGCACATGCCTCGATTAATATTGGCATAATCTAGATTT
          1 GTGCAAGCACATGCCTCGATCAGTATTGGCATAATCTAGACTA

                                   
      11441 GTGCAAGCACATGCCTCGATCAG
          1 GTGCAAGCACATGCCTCGATCAG

      11464 CATTAGCAGA


Statistics
Matches: 55,  Mismatches: 11, Indels: 1
        0.82            0.16        0.01

Matches are distributed among these distances:
  43   19  0.35
  44   36  0.65

ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Consensus pattern (43 bp):   
GTGCAAGCACATGCCTCGATCAGTATTGGCATAATCTAGACTA
Done.