Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168210.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26643
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Found at i:697 original size:26 final size:26
Alignment explanation
Indices: 668--720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
658 CCGGTCCAAT
668 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
720 C
1 C
721 CTTAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1549 original size:26 final size:26
Alignment explanation
Indices: 1520--1572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1510 CCGGTCCGAT
1520 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * *
1546 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
1572 C
1 C
1573 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:2439 original size:26 final size:26
Alignment explanation
Indices: 2396--2448 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2386 CTGGTCTGAT
2396 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
2422 CTTAGACTGTGGAA-GAACTCCGTATG
1 CTTACACTG-GGAATGAACTCCGTATG
2448 C
1 C
2449 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2883 original size:895 final size:889
Alignment explanation
Indices: 1147--4260 Score: 4392
Period size: 894 Copynumber: 3.5 Consensus size: 889
1137 TTTTTTTAAA
* *
1147 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCAT
* * *
1212 TT-TAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
66 TTAT-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
1276 AATGCTCTTTAAGGGGGAGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
**
1341 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCACCCCCCCAATCACCGGAACCGT
195 AAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCA-CCCCCCAATCACCGGAACCCC
* * * **
1406 AATGCCACCGGTCAGGTTCTCCGATGATGCTCCGGTGATTGG-GCCCCG-G-GGGAAAAAA-A--
258 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGA-TGGTGCCCCGAGTGAAAAAAAATACG
* * *
1465 --ACCAGCACATGACCGAGCCCAGCATGTACACCCACAACCCTC-AGTCCGGTCCGATCTTACAC
322 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGA-TCCGATCCGATCTTACAC
* * *
1527 TAGGAATGAACTCCGTATGCTTAGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
386 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
1592 GAGCGTGCGAGCT-CTCAGCGGGCCAGAGGGGCAGGATGCGCAAGCCGTGGATCGGTCAGGTCCC
451 GAGCGTGCG-GGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACAGGTCCC
1656 CCCTACGTGCTACCGATCCTGCTACCAA--TC-T-T-A---GA-C-T-G---GGAATGAACTCCG
515 CCCTACGTGCTACCGATCCTGCTACCAACCTCGTCTGATCTGATCTTAGACTGGAATGAACTCCG
* * * * * *
1707 TATGCCTAAGCTAACTGATGAAATGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGTGGGAT
580 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGTGGGAT
* * * *
1772 GTGCAAGCCATGGATCGATA-GGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
645 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
*
1836 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATA
710 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATG
* * * * * *
1901 GCAAGACGACTCGTTCTCTATTTTTCATAATTTTTAAAACATTTTATGGTTCGGGATATTTTAAA
775 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAA
*
1966 AATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGT
839 AATTTTTTCAGAAGGAGTTTTGGCCCCACACTTTGTAGACATGATCCTTGT
* *
2017 ATTTTTATTGGCATGCGCAAAAAAAATTTAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCA
1 ATTTTTATTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCA
2082 TTTATAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
65 TTTATAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
2147 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
2212 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGCCCCCAATCACCGGAACCCCA
195 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAC-CCCCCAATCACCGGAACCCCA
* *
2276 ATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGTGAAAAAAAATACGGC
259 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGTGAAAAAAAATACGGC
* ** * * *
2341 ACCAGAACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGATCTGGTCTGATCTTACACTGG
324 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACACTGG
2406 GAATGAACTCCGTATGCTTAGACTGTGGAA-GAACTCCGTATGCCTAAGTCAACCCACGAAACGA
389 GAATGAACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
2470 GCGTGTGGGTGCTCAACCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACAGGTCCCCCC
453 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACAGGTCCCCCC
* ** * *
2535 TACGTGTTGTCGATCTTGCTACCATAACCCTCAGTCTGATCTGATCTTAGACTGGAATGAACTCT
518 TACGTGCTACCGATCCTGCTACC--AA-CCTC-GTCTGATCTGATCTTAGACTGGAATGAACTCC
* * *
2600 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGACGGGCACTATGCCGGCCAGAGAGGTGAGA
579 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGTGGGA
* *
2665 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTACCATGC
644 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGC
*
2730 CAATGCCATTTTTATGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCAT
709 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCAT
* * * *
2795 GGCCAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTTT
774 GGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTA
* *
2860 AAATTTTTTTAGAA-GACGTTTTGGCCCCACACTTTGTAGACGTGATCCTTGT
838 AAATTTTTTCAGAAGGA-GTTTTGGCCCCACACTTTGTAGACATGATCCTTGT
* **
2912 ATTTTTATAGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAAGAGTACTGGATTTTGTGACCA
1 ATTTTTATTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCA
*
2976 TTTATAAACAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
65 TTTATAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
3041 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
3106 AAGTACCAGCGCCCGTCGCACATCATGTGCGCACACCCCCCACCCCCCAATCACCGGAACCCCAA
195 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCACCCCCCAATCACCGGAACCCCAA
* * * *
3171 TGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTG-CCCTAGGTGAAAAAAAATGCGGC
260 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-GTGAAAAAAAATACGGC
* ** * * *
3235 ACGAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGATCTGATCTTAC-CTTG
324 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACAC-TG
* * * *
3299 GCAATGAACTCCGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA
388 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
3364 GCGTGCAGGCGCTCAGCCGGCTAGAGTGGCAGGATGCACAAGCCGGGGATCGAACGGGTCCCCCC
453 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACAGGTCCCCCC
* * *
3429 ATGCGTGCTACCGATCCTGCTGCCGCAACCTTTGGTCTGATCTGATCTTAGACTGGGAATGAACT
518 -TACGTGCTACCGATCCTGCT-AC-CAACC--TCGTCTGATCTGATCTTAGACT-GGAATGAACT
*
3494 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGG
577 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGTGG
* ** *
3559 GATGCGTAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATACCAT
642 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
* *
3624 GCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
707 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTC
* *
3689 ATGGCAAGAC-ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTATACGGTTCGAGATTTTTT
772 ATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCG-GATTTTTT
* * * * * *
3753 TAAAATTTTTTCAAAATGAGTTTT-GCCCGAAAATTTGTAGACATGATCCTAGT
836 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTTGTAGACATGATCCTTGT
* * * *
3806 ATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCAT
1 ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCAT
* *
3871 TTGA-AAAAAGTGTCCCCATTTCAGACACTTAAATGGCTATTGGCAGCAAACCTGTAAAATCTCA
66 TT-ATAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
3935 AATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
130 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** **
4000 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGC-CCCCCCAATCGTCGGAACCGTA
195 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CACCCCCCAATCACCGGAACCCCA
* * * ** * * **
4064 ATGCCGTCGTTAAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGGTGAAAAAAAATGTGGC
259 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGTGAAAAAAAATACGGC
* * * *
4129 ACGAGCACATGCCCAAGCCCAGCATGTGCACCTACAACCCTCGATCCAATCCGATCTTACACTGG
324 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACACTGG
* * * *
4194 GAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
389 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
4259 CG
454 CG
4261 GGTGGGCGGG
Statistics
Matches: 2014, Mismatches: 179, Indels: 78
0.89 0.08 0.03
Matches are distributed among these distances:
868 4 0.00
869 57 0.03
870 23 0.01
871 208 0.10
872 2 0.00
875 2 0.00
876 186 0.09
877 5 0.00
878 2 0.00
881 2 0.00
883 1 0.00
884 1 0.00
885 1 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 1 0.00
893 18 0.01
894 954 0.47
895 338 0.17
896 204 0.10
897 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCAT
TTATAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCACCCCCCAATCACCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGTGAAAAAAAATACGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACACTGGGA
ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACAGGTCCCCCCTAC
GTGCTACCGATCCTGCTACCAACCTCGTCTGATCTGATCTTAGACTGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGTGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTT
TCAGAAGGAGTTTTGGCCCCACACTTTGTAGACATGATCCTTGT
Found at i:4213 original size:26 final size:26
Alignment explanation
Indices: 4184--4236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4174 CCAATCCGAT
*
4184 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
4210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
4236 C
1 C
4237 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:4887 original size:737 final size:735
Alignment explanation
Indices: 3475--4940 Score: 2259
Period size: 737 Copynumber: 2.0 Consensus size: 735
3465 CTGATCTGAT
*
3475 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * * ** *
3540 ATGCCGGCCAGAGAGGCGGGATGCGTAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCAC
*
3605 ATCTTCATATTTATACCATGCCAATGCCATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTATACCATGCCAATGCAATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTA
* * *
3670 AGCCTTCATGTGAAGTTTCATGGCAAGACACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTA
196 AGCCTTCAAGTGAACTTTCATGGCAAGACACTCATTTTCTATTTTTCACAATTTTTGAAACTTTA
* * * * * *
3735 TACGGTTCGAGATTTTTTTAAAATTTTTTCAAAATGAGTTTTGCCCGAAAATTTGTAGACATGAT
261 TACGGTTCAAGATTTTTTAAAAATATTTTCAAAAGGAGTTTTGCCCCAAAATTGGTAGACATGAT
*
3800 CCTAGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGT
326 CCTAGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * *
3865 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAAATGGCTATTGGCAGCAAACCTGTAAAA
391 GACCATTTGAAAAAAGTGTCCCCAGTTCAAACACTTAAATGGCTACTGGCAGCAAACCTGTAAAA
* *
3930 TCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
456 TCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAA
3995 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGCCCCCCCAATCGTCGGAAC
521 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGCCCCCCCAATCGTCGGAAC
** * * * * * *
4060 CGTAATGCCGTCGTTAAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGGGTGAAAAAAAATG
586 CCCAATGCCGCCGGTAAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGGGCGAAAAAAAATA
* *
4125 TGGCACGAGCACATGCCCAAGCCCAGCATGTGCACCTACAACCCTCGATCCAATCCGATCTTACA
651 TGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGATCCAATCCGATCTTACA
4190 CTGGGAATGAACTCCATATG
716 CTGGGAATGAACTCCATATG
*
4210 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCACT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
*
4275 ACGTCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCAC
* ** * *
4340 ATCTTCATATTTCTACTGTGCCAATGCAATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTATACCATGCCAATGCAATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTA
* * ** *
4405 AGCCTTCAAGTGAACTTTCATGGCAAGATGACTCATTTTGTATTTTTCATGATTTTTTAAACTTT
196 AGCCTTCAAGTGAACTTTCATGGCAAGA-CACTCATTTTCTATTTTTCACAATTTTTGAAACTTT
* * * * *
4470 TTACGGTTCAAGATTTTTTAAAAATATTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
260 ATACGGTTCAAGATTTTTTAAAAATATTTTCAAAAGGAGTTTT-GCCCCAAAATTGGTAGACATG
* *
4535 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
324 ATCCTAGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
4600 GTGACCATTTGAAAAAAGTGTCCCCAGTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCAGTTCAAACACTTAAATGGCTACTGGCAGCAAACCTGTAA
* *
4665 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATAT
454 AATCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATAT
* * *
4730 AAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGCCCCCCAATCGTCGG
519 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGC-CCCCCCAATCGTCGG
* * * *
4795 AACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGGGGATGGTGCCTCGGGCG-AAAAAT
583 AACCCCAATGCCGCCGGTAAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGGGCGAAAAAAA
* * * * ***
4859 ATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCGTTGATCTGGTCCGATCTT
648 ATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGATCCAATCCGATCTT
4924 ACACTGGGAATGAACTC
713 ACACTGGGAATGAACTC
4941 GTATGTCTAA
Statistics
Matches: 657, Mismatches: 71, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
735 205 0.31
736 66 0.10
737 323 0.49
738 63 0.10
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (735 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTATACCATGCCAATGCAATTTTTATGGCTGGTAAATTCATACAATGGTCCCTTA
AGCCTTCAAGTGAACTTTCATGGCAAGACACTCATTTTCTATTTTTCACAATTTTTGAAACTTTA
TACGGTTCAAGATTTTTTAAAAATATTTTCAAAAGGAGTTTTGCCCCAAAATTGGTAGACATGAT
CCTAGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
GACCATTTGAAAAAAGTGTCCCCAGTTCAAACACTTAAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAAGGGGTGCGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGCCCCCCCAATCGTCGGAAC
CCCAATGCCGCCGGTAAGGTTCTCCGGCGATGCTCCGGGGATGGTGCCCCGGGCGAAAAAAAATA
TGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGATCCAATCCGATCTTACA
CTGGGAATGAACTCCATATG
Found at i:7578 original size:26 final size:26
Alignment explanation
Indices: 7540--7592 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7530 CCAGTCTAAT
7540 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * * *
7566 CTTAGACTGGGAATTAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
7592 C
1 C
7593 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:7894 original size:878 final size:878
Alignment explanation
Indices: 4921--8520 Score: 4128
Period size: 899 Copynumber: 4.1 Consensus size: 878
4911 CTGGTCCGAT
* * *
4921 CTTACACTGGGAATGAACTCGTATGTCTAAGTCAACCCACGAAACGAGCGTACAGGTGC-TCAAC
1 CTTACACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-GCGTCAGC
* * ** * *
4985 CGGCCAG-GGAGGCAGGATGCACAAGCCGGGGATTGGTTAGGTACCCCC-TACGTGCTGCCGATC
64 CGGCCAGAGG-GGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCTTACGTGCTGCCAATC
** * * * * * *
5048 CTACTAGTGCAACCCTCATTGTGGTCTGATCTTAGACTGGGAATGAACTCC-CTATGCCTAAGCT
128 CTACTACCGCAACCCTCAGTCTGGTCTAATCTGAGACTGGGAACGAACTCCAC-ATGCCTAAGCG
* * *
5112 AACCGACGAAACGAGCG-GACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
192 AACCGACGAAACGAGAGAG-CGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGT
** * **
5176 GGATCGATAGGGTGGTAGGTGCCTTTAGGCACATCTTCATATTTTTTCTGTGCCAATGCCATTTT
256 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
* *
5241 TATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
** * * *
5306 CATTTTCTATTTTTCATGATTTTGGAAACTTTTTATGGTTCGGGATTTTTTAAAAATTTTTTCAG
386 CATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
* * *
5371 AAGGAGTTTTGGCCCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCCTGCACAAAAACA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
5436 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGA
516 TTTA-CTAAAAACTCAAAGTGTACAGGATTTTGT----G-TTG----AA--G-CCCCATTTCAGA
* * *
5501 TACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAACGGGGTGTGAGTTC
568 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
5566 TTGAGGTTTGGTGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
633 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * ***
5631 GTGTGCACACCCCCCCCGCCCCCCCAATCGTCGGAACCCCAATGTCGTTGGTCAGGTTATCCGGT
698 GTGCGCACA--CCCCCCG-CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAAC
* * * * * *
5696 GATGCTTCGACAATGGTGCCCCGGGCAAAAAAAAATACGGCACCAACACATGCTCAAGCCCAGCA
760 GATGC-TAGGC-ATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* **
5761 TGTGCACCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACCCTATATG
823 TGTGCACCCACAACCCTCGATCCAGTCCGATCTTACACTGGGAATGAACCC-ATATG
** * * *
5818 CTTACACTGGGAATGAACTCCGTATGTGTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGC
1 CTTACACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GTCAGC
* * ** * * * * * *
5883 TGGCCAGAGGGGCAGTATGCACAAGTCATGGATCAGTCGGATCCCCCCCTATGTGCTGTCGATCC
64 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCTTACGTGCTGCCAATCC
* * * * * * *
5948 TACTACTGCAACCCTCAGTCTGGTCTAATCTTATATTGGGAATGAACTCCATATGCCTAAGCCAA
129 TACTACCGCAACCCTCAGTCTGGTCTAATCTGAGACTGGGAACGAACTCCACATGCCTAAGCGAA
* * * * * * * **
6013 CCGACGAAACGAGCGGGCGGGCGGGCACTATGTCAGCCAAAGAAGTGGGATGCGTAAGCCGTGGA
194 CCGACGAAACGAGAGAGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGTGGA
*
6078 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTAT
* * *
6143 GGCTTGTAAATTCATATAATGGTCCCTTACGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
324 GGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
* *
6208 TTTTTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGCA
389 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAA
* *
6272 GGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTT
453 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-AT
* * *
6337 TTTCTAAAAACTCAAAGCGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 TTACTAAAAACTCAAAGTGTACAGGATTTTGTG-----TTG----AA--G-CCCCATTTCAGACA
6402 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
570 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
6467 GAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGT
635 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
6532 GCGCACACCCCCCGCCCCCCAGTCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGC
700 GCGCACACCCCCCGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGC
* * **
6597 TACGGCGATGGTGCCCCAGGCGAAAAAAAATACGGCACCAGCACAAGCTTGAGCCCAGCATGTGC
765 TA-GGC-ATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
6662 ACCCACAACCCTTGGTCCAGTCCGATCTTACACT-GG---G-----A-ATG
828 ACCCACAACCCTCGATCCAGTCCGATCTTACACTGGGAATGAACCCATATG
* *
6703 ---A-AC------T----TCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGTGGTCAGCC
1 CTTACACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CGTCAGCC
* * * * *
6754 GGCCAGACGGGCAGGATGTAAAAGTCGGGGATCGGTCGGGTCCCCCCTTGCGTGCTGCCAATCTT
65 GGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCTTACGTGCTGCCAATCCT
* * * * * * ** *
6819 ATTACCGTAACCCTCAGTCTGATCTAATTTGAGACTGGGAACAAACTTCGTATGCCTAAGCGAAT
130 ACTACCGCAACCCTCAGTCTGGTCTAATCTGAGACTGGGAACGAACTCCACATGCCTAAGCGAAC
* * * * **
6884 CGATGAAATGAGAGAGCGGGCGGGCATTACGCCGGCCAAAGAGGCAGGATGCACAAGTTGTGGAT
195 CGACGAAACGAGAGAGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGTGGAT
*
6949 CGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATG
260 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATG
*
7014 GCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATT
* * *
7079 TTCTATTTTTCATGATTTTTGAAACTTTTTACGATTTGAGATTTTTTTAAAATTTTTTCAGAAGG
390 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
* * *
7144 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTA
455 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
*
7209 CCTAAAAACTCAAAGTGTACAGGA-TTT-TG-TG-A-CCCCATTTCAAACACTTTAATGGCTACT
520 -CTAAAAACTCAAAGTGTACAGGATTTTGTGTTGAAGCCCCATTTCAGACACTTTAATGGCTACT
* *
7269 GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
584 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
7334 GATAGGGGGCCAATGTAAGGGCCAAGTACCAGGACCCATCGCACATCATGTACGTACA-CCCCCG
649 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
7398 CCCCCTCAATCATTGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTAGGCTATGGTAC
714 CCCCC-CAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTAGGC-ATGGTGC
* * * * * *
7463 CCTGGGCGAAAAAAAATGCGGCACTAGCACATGCCCGAGCCCAGGATGTGCACTCATAACCCTCG
777 CCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCG
** * *
7528 ATCCAGTCTAATCTTACACTAGGAATGAACTCCGTATG
842 ATCCAGTCCGATCTTACACTGGGAATGAAC-CCATATG
* * * * *
7566 CTTAGACTGGGAATTAACTCTGTATGCCTAAGTTAACCGACGAAACGAGCGTGCGGGCAGTGAGC
1 CTTACACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GTCAGC
* * *
7631 CGGCCAGAGGGGCAGGATGCACAAGTTGGGGATCGGTCGGGTCCCCCCTTACATGCTACCAATCC
64 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCTTACGTGCTGCCAATCC
* * * * *
7696 TACTACCGTAACCCTCAATCCGGTCTGATCTGAGACTGGGAACGAACTCCACATGGCTAAGCGAA
129 TACTACCGCAACCCTCAGTCTGGTCTAATCTGAGACTGGGAACGAACTCCACATGCCTAAGCGAA
* * * * * * *
7761 CCAACGAAACGAGAGATCGGGCAGGTACTACGTCGGCCAGAGAGGCGGGATGCACAAGCTGTGGA
194 CCGACGAAACGAGAGAGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGTGGA
*
7826 TCGATAGGGTGGTAGGTGGGTTTCA-GCACATCTTCATATTTTTGCCGTGCCAATGCCATTTTTA
259 TCGATAGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
* * **
7890 TGGCTTGTAAATTAATACAATGGTCCTTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTTG
323 TGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCA
* * * *
7955 TTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
388 TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* **
8020 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-TATTTTTG-T-G--T--AC---AGGATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*** ** *** * *
8075 T--T-GTGAC-C-ATTTG-A-A--A-AAAGTG-T----CCCAATTTCAGACACTTTAGTGGCTAC
518 TACTAAAAACTCAAAGTGTACAGGATTTTGTGTTGAAGCCCCATTTCAGACACTTTAATGGCTAC
*
8125 TGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
583 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
8190 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCC
648 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * *
8254 ACCCCCCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCT-C--C-A-G-T--G-ATGGTGCT
713 GCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTAGGCATGGTGCC
* * * ***
8310 CCGGGC-AAAAAAAATACGGCACCAGCATATGCCCTAGCCTAGCATGTGCACCTGTAACCCTC-A
778 CCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGA
*
8373 GTCC-GATCCGATCTTACATTGGGAATGAACTCCATATG
843 -TCCAG-TCCGATCTTACACTGGGAATGAAC-CCATATG
* * * * * *
8411 CTTAGACTAGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTTAGC
1 CTTACACTGGGAATGAACTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-TCAGC
* ** * *
8476 CAGCCAGAGGGGCAGGATGTGCAAGCCGGGGATTGGTCGGGTCCC
64 CGGCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCC
8521 TCCTATGTCA
Statistics
Matches: 2367, Mismatches: 286, Indels: 152
0.84 0.10 0.05
Matches are distributed among these distances:
844 3 0.00
845 171 0.07
846 11 0.00
848 1 0.00
850 1 0.00
851 1 0.00
852 92 0.04
853 189 0.08
855 1 0.00
856 34 0.01
857 153 0.06
858 1 0.00
859 3 0.00
860 1 0.00
861 1 0.00
862 5 0.00
863 4 0.00
864 2 0.00
865 1 0.00
866 1 0.00
867 2 0.00
868 7 0.00
869 6 0.00
870 448 0.19
871 3 0.00
873 2 0.00
875 2 0.00
876 1 0.00
877 9 0.00
878 421 0.18
881 2 0.00
882 1 0.00
885 3 0.00
886 1 0.00
892 1 0.00
895 4 0.00
896 132 0.06
897 28 0.01
898 70 0.03
899 545 0.23
900 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
CTTACACTGGGAATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTCAGCCG
GCCAGAGGGGCAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCTTACGTGCTGCCAATCCTA
CTACCGCAACCCTCAGTCTGGTCTAATCTGAGACTGGGAACGAACTCCACATGCCTAAGCGAACC
GACGAAACGAGAGAGCGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGG
CTTGTAAATTAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAC
TAAAAACTCAAAGTGTACAGGATTTTGTGTTGAAGCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCC
CCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTAGGCATGGTGCCCCG
GGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGATCC
AGTCCGATCTTACACTGGGAATGAACCCATATG
Found at i:16515 original size:26 final size:26
Alignment explanation
Indices: 16486--16538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476 CCTGTCCGAT
*
16486 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16512 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16538 C
1 C
16539 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16636 original size:17 final size:17
Alignment explanation
Indices: 16614--16650 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
16604 GGGGATCGAC
16614 CTTTGATTCGGTTCAAT
1 CTTTGATTCGGTTCAAT
16631 CTTTGATTCGGTTCAAT
1 CTTTGATTCGGTTCAAT
16648 CTT
1 CTT
16651 AGACTGGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (17 bp):
CTTTGATTCGGTTCAAT
Found at i:17260 original size:26 final size:26
Alignment explanation
Indices: 17231--17283 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17221 CCGGTCAGAT
*
17231 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
17257 CTTAGATTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
17283 C
1 C
17284 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:18145 original size:26 final size:26
Alignment explanation
Indices: 18116--18167 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18106 CCAGTCTGAT
18116 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
18142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
18168 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:19923 original size:26 final size:26
Alignment explanation
Indices: 19894--19974 Score: 119
Period size: 26 Copynumber: 3.2 Consensus size: 26
19884 CTGGTCCGAT
*
19894 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19920 CTTAGACTGGGAATGAACT-CGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
19945 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCGTATG
19971 CTTA
1 CTTA
19975 GCTGGCCAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
25 23 0.47
26 26 0.53
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:19948 original size:25 final size:26
Alignment explanation
Indices: 19901--19979 Score: 117
Period size: 25 Copynumber: 3.1 Consensus size: 26
19891 GATCTTACAT
19901 TGGGAATGAACTCCGTATGCTTAGAC
1 TGGGAATGAACTCCGTATGCTTAGAC
*
19927 TGGGAATGAACT-CGTATGCTTACAC
1 TGGGAATGAACTCCGTATGCTTAGAC
* *
19952 TAGGAATGAACTCCATATGCTTAG-C
1 TGGGAATGAACTCCGTATGCTTAGAC
19977 TGG
1 TGG
19980 CCAGATGGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
25 26 0.55
26 21 0.45
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
TGGGAATGAACTCCGTATGCTTAGAC
Found at i:21707 original size:26 final size:26
Alignment explanation
Indices: 21678--21730 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21668 CTGGTCCGAT
21678 CTTACACTGGGAATGAAC-TCTGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
21704 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
21730 C
1 C
21731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:22177 original size:898 final size:895
Alignment explanation
Indices: 19014--22674 Score: 5132
Period size: 893 Copynumber: 4.1 Consensus size: 895
19004 CCAGTCCGAT
* * *
19014 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
* * *
19079 CAGCCAGAGGGGCAGGATGCTCAAGCTAGGGATCGATCGGGTCCCCCCTATGTGTTACCGATCCT
66 CAGCCAGAGGGGCAGGATGCGCAAGCT-GGGATCGATCAGGTCCCCCCTATGTGCTACCGATCCT
* * * *
19144 ACTGCCGCAACCCTCTGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
130 GCTGCCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
19209 TGGCGAAACGAGCGGACGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGTGCAAGCCGTGGAT
195 CGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
19274 CGATAGGGTGGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
260 CG--A---T--AGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCAT
* *
19339 TTTTATGGCTTGTAAATTCATACACTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
318 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
*
19404 ACTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
383 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * *
19469 CAGAAGGAGTTTTGCCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAA
448 CAGAAGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * * * *
19534 AAATTCAGCTAAAAACTTGAAATGTATAAGATTTTGTAACCATTTGAAAAAAATGTCCACATTTT
513 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTC
*
19599 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
19664 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAGGTACCAGCACCCATCGCACAT
643 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
19729 GATGTGCGCACACCCCCCCCCGCCCCCTAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTTTCT
708 CATGTGCGCACA-CCCCCCCCGCCCCC-AATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
19794 GACGATGCTCCGACGATGGTGCCCC-AGGCAAAAAAAAAATGTGGCACCAGCATATGCCCGAGCC
771 GACGATGCTCCGACGATGGTGCCCCGA-GC-GAAAAAAAATGCGGCACCAGCACATGCCCAAGCC
* *
19858 CAGCATGTGCACCCGCAACCCTTGGTCTGGTCCGATCTTACATTGGGAATGAACTCCGTATG
834 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * * * *** *
19920 CTTAGACTGGGAATGAACT-CGTATG-CTTA--C-A-CTA-GGAATGAA-CTCCATATGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
** * * *
19977 TGGCCAGATGGGCAGGATGCGCAAGCCGGGGATCGATC-GAGTCCCCCCT-TGCATGCTGCCGAT
66 CAGCCAGAGGGGCAGGATGCGCAAG-CTGGGATCGATCAG-GTCCCCCCTATG--TGCTACCGAT
* * * * * *
20040 CTTGCTGTCGCAACCCTCAGTTCGATCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
127 CCTGCTGCCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
20105 AGCCGACGAAACGAGCGGGCGAGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAACCCGTG
192 AACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * * *
20170 GATCGATAGGGTGGTAGATTGGTTTAGAAACATCTTCATATTTCTACCATGCCAATGCTATTTTT
257 GATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCATTTTT
20235 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* **
20300 GCTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
387 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
* *** * * *
20365 AGGTGTTTTGGCTGTAACCTTGGTAGATGTGATCCTTGTATTGTTTTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
20430 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGAC
* * *
20495 ACTTTAATGGCTACTGGCAGCAAACCTATAAGACCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-
* * *
20560 TC-AGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGCACATCCT
646 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
20624 GTGCACACACCCCCTGC-CCCCCAATCGCCAGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGA
711 GTGCGCACACCCCCCCCGCCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * * * ** ***
20688 TGCTCCGATGATGGTGCCTCGGGTGAAAAAAAATACGGCACCAGCAAATGCCTGAGTGTAGCATG
776 TGCTCCGACGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
* *
20753 TGCACCAGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATG
841 TGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * ** * * * *
20808 CTTAGAATGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
* ** * * ** * *
20873 CGGCCAGAACGGTAGGATGCACAAGTCAAGGATCGGTCAGGTCCCCCCTATGTGCCACCGATCCT
66 CAGCCAGAGGGGCAGGATGCGCAAG-CTGGGATCGATCAGGTCCCCCCTATGTGCTACCGATCCT
* * *
20938 GCTGCCA-GACCCT-TGATTCGGTCCGATCTTAGACT-AGAATGAACTCCGTATGCCTAAGCCAA
130 GCTGCCACAACCCTCAG-TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * *
21000 CCAAGGAAACAAGCGGGCGGATGGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
194 CCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
21065 TCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTACCATGCCAATGCCATTTTTAT
259 TCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
21130 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
21195 TTTCTATTTTTCATGATTTTTGAAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTCAGAA
389 TTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* *
21260 GGA-TTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCTCAAAAAAATT
453 GGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
21324 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA
* *
21389 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGTTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
21454 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGT
648 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
21519 GCGCACACCCCCCCCGGTCCCCCAATTGCCAGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGA
713 GCGCACACCCCCCCC-G-CCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * *
21584 TGCTCCGACGTTGGTGCCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGTATG
776 TGCTCCGACGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATG
* * *
21649 TGCGCCCGCAACCCTCAGTCTGGTCCGATCTTACACTGGGAATGAACTCTGTATG
841 TGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * *
21704 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
** *
21769 CAGTTAGAGGGGCAGGATGCGCAAGCTGGGAATCGATCAGGTCCCCCCT-TGCGTGCTGCCGATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCTGGG-ATCGATCAGGTCCCCCCTAT--GTGCTACCGATC
* * * *
21833 CTGCTGCCACAGCCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTGCTGCCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
21898 ACCGACGAAACAAGCAGGCGGGC-GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCACGG
193 ACCGACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
21962 ATCGATAGGGTGGTAGGTGGGCTTAGGAACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
258 ATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
* * *
22027 TAGCTTGTAAATTTAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
*
22092 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGATTCGAGATTTTTTTAAAATTTTTTCAGAA
388 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* * *
22157 AGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCTCAAAACAATT
453 GGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
22222 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA
22287 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
22351 AAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
648 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
22416 GCGCACACCCCCCAC-CCCCCAATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCTGACGATG
713 GCGCACACCCCCCCCGCCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* *
22480 CTCCAACGATGGTGCCTCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
778 CTCCGACGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
* *
22545 CACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTTCGTATG
843 CACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
** ** * * *
22598 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
*
22663 TAGCCAGAGGGG
66 CAGCCAGAGGGG
22675 TAAGATGTAC
Statistics
Matches: 2428, Mismatches: 298, Indels: 70
0.87 0.11 0.03
Matches are distributed among these distances:
888 102 0.04
889 63 0.03
890 8 0.00
891 6 0.00
892 416 0.17
893 472 0.19
894 278 0.11
895 24 0.01
896 279 0.11
897 157 0.06
898 418 0.17
899 174 0.07
900 2 0.00
901 1 0.00
902 1 0.00
904 3 0.00
905 6 0.00
906 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAATGTGCAGGCGCTCAGC
CAGCCAGAGGGGCAGGATGCGCAAGCTGGGATCGATCAGGTCCCCCCTATGTGCTACCGATCCTG
CTGCCACAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACAAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCCGCCCCCAATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCAC
CCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
Found at i:22608 original size:26 final size:26
Alignment explanation
Indices: 22572--22624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22562 CTGGTCCGAT
*
22572 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
22598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22624 C
1 C
22625 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Done.