genome.fa.s386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168211.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26573

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--64	30	2.0	31	85	11	85	52	3	0	44	1.17
478--909	181	2.4	181	76	3	431	39	7	9	42	1.67
997--1087	23	4.0	22	75	13	78	50	2	0	47	1.13
1023--1122	20	5.3	19	68	27	70	52	1	1	46	1.14
1072--1112	19	2.2	19	91	4	66	43	0	2	53	1.13
1238--1284	23	2.0	23	83	0	58	51	0	0	48	1.00
1750--1799	15	3.3	15	78	13	57	52	0	2	46	1.12
2894--2956	16	4.0	16	74	17	51	52	1	1	44	1.20
4652--4710	21	2.8	20	80	12	66	40	1	0	57	1.09
4944--4990	12	3.7	12	81	13	58	61	0	2	36	1.08
5257--5309	23	2.5	20	75	18	54	43	0	0	56	0.99
6144--6219	15	4.9	14	73	20	55	50	1	1	47	1.18
6133--6194	25	2.4	27	86	5	83	48	1	0	50	1.10
6125--6220	30	3.4	28	76	16	90	50	1	1	47	1.15
6249--6291	10	4.4	10	76	5	52	53	0	2	44	1.13
6392--6459	26	2.8	25	73	20	63	51	0	0	48	1.00
6588--7506	178	5.2	178	75	9	697	42	9	8	39	1.69
6801--7487	355	1.9	358	80	6	804	42	8	8	39	1.67
7857--7903	21	2.2	22	88	3	69	38	4	2	55	1.31
7896--7939	18	2.3	18	88	7	61	54	0	0	45	0.99
8442--8495	18	2.8	20	75	18	60	57	0	3	38	1.17
8608--8637	14	2.1	14	93	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8564--8630	29	2.3	31	75	19	72	52	2	1	43	1.25
8626--8705	23	3.4	23	72	10	72	37	2	2	57	1.26
9019--9056	20	2.0	19	85	10	51	44	2	0	52	1.14
9526--9571	21	2.2	21	84	0	56	36	2	2	58	1.22
9559--9601	22	2.0	21	90	4	68	37	2	2	58	1.24
10311--10346	18	1.9	19	88	5	56	38	2	2	55	1.29
10579--10639	15	3.9	14	72	19	50	52	1	3	42	1.27
10578--10658	24	3.4	25	75	14	73	51	1	2	44	1.22
10612--10659	13	3.5	13	80	5	51	52	0	0	47	1.00
11325--11364	18	2.3	17	86	4	53	52	0	2	45	1.14
11813--12395	181	3.2	181	80	2	607	40	6	9	42	1.65
12439--12476	17	2.2	17	86	9	51	55	0	0	44	0.99
12463--12514	14	3.4	14	78	17	50	57	1	0	40	1.10
12727--12781	23	2.2	26	78	12	62	40	10	0	49	1.38
13120--13157	20	1.9	20	88	0	58	52	5	2	39	1.38
13145--13190	18	2.4	20	89	7	69	41	4	0	54	1.20
13687--13739	26	2.0	26	85	7	72	52	0	0	47	1.00
13746--13775	12	2.6	12	94	5	53	53	0	0	46	1.00
13924--13980	29	1.9	29	85	3	78	43	3	3	49	1.36
13973--14023	21	2.4	22	81	12	63	52	0	3	43	1.19
14551--14587	19	1.9	19	88	0	56	75	5	2	16	1.10
14727--14787	24	2.4	26	79	17	67	73	6	11	8	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14860--14899	18	2.2	18	86	4	53	77	5	10	7	1.11
15547--15591	12	3.7	13	77	17	51	77	6	8	6	1.11
15545--15598	23	2.2	26	81	15	71	77	5	7	9	1.11
15696--15783	40	2.2	41	78	15	96	69	6	4	19	1.29
16420--16508	31	2.8	31	79	16	85	78	5	4	11	1.06
16452--16516	17	3.7	17	75	20	62	78	4	3	13	1.03
16452--16518	22	3.1	21	80	19	68	79	4	2	13	1.01
16415--16516	53	1.9	52	82	9	127	77	5	3	12	1.09
16440--16519	27	3.0	26	75	14	74	77	7	2	12	1.07
16870--16912	13	3.4	12	78	9	50	79	6	6	6	1.07
16870--16911	12	3.2	13	78	21	52	80	7	7	4	1.00
16906--16936	16	1.9	16	93	0	53	80	0	3	16	0.83
16890--16936	20	2.4	20	82	10	62	80	2	4	12	0.94
17740--17832	35	2.8	34	73	19	81	76	5	4	13	1.12
18088--18134	14	3.4	14	77	11	51	78	0	10	10	0.96
18944--18980	19	1.9	19	88	0	56	75	5	2	16	1.10
19472--19552	34	2.4	33	77	8	83	76	7	4	11	1.14
19956--20000	12	3.7	13	77	17	51	77	6	8	6	1.11
19954--20007	23	2.2	26	81	15	71	77	5	7	9	1.11
20057--20133	28	2.8	28	82	7	88	75	2	3	18	1.07
20104--20191	40	2.2	41	78	15	96	69	6	4	19	1.29
20817--20897	16	4.9	15	74	19	56	79	3	4	12	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20817--20915	28	3.7	26	73	14	67	77	5	4	13	1.07
20817--20915	53	1.9	51	84	8	130	77	5	4	13	1.07
20836--20901	22	3.1	19	81	18	69	80	4	3	12	0.98
20838--20917	22	3.6	22	80	20	64	78	6	2	12	1.03
21302--21332	16	1.9	16	93	0	53	80	0	3	16	0.83
21353--21412	12	5.2	12	76	6	52	76	0	5	18	0.96
21353--21412	23	2.6	23	81	7	77	76	0	5	18	0.96
22138--22210	35	2.1	34	82	12	87	76	4	5	13	1.11
22476--22508	16	2.1	16	94	5	59	84	0	9	6	0.76
22534--22567	17	1.9	18	88	5	52	82	2	11	2	0.89
23317--23353	19	1.9	19	88	0	56	75	5	2	16	1.10
23494--23554	24	2.4	26	79	17	67	73	6	11	8	1.24
23627--23667	19	2.2	19	86	0	55	75	7	9	7	1.18
23859--23942	36	2.3	35	78	8	89	77	7	4	10	1.11
24366--24395	9	3.3	9	90	0	51	76	3	0	20	0.92
24412--24460	21	2.3	21	78	3	53	73	0	4	22	1.00
24418--24492	26	2.8	28	80	11	86	76	2	4	17	1.06
24422--24493	25	2.7	27	79	12	78	76	2	4	16	1.06
24480--24534	23	2.3	23	78	6	56	70	5	7	16	1.28
24609--24641	15	2.2	15	89	10	50	72	6	6	15	1.24
25185--25260	30	2.5	31	83	12	88	78	3	5	11	1.04
25178--25278	17	5.7	17	70	17	55	77	4	3	13	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25238--25280	22	2.0	22	86	9	61	79	6	2	11	1.02
25671--25701	16	1.9	16	93	0	53	80	0	3	16	0.83
25721--25782	12	5.5	11	74	12	54	74	0	4	20	1.00

Tables:   1

The End!