genome.fa.s39.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167864.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70240

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10051--10096	24	1.9	24	86	0	65	54	0	2	43	1.12
14377--14419	19	2.2	20	83	4	52	53	2	0	44	1.13
14583--14612	15	1.9	16	93	6	53	56	0	0	43	0.99
16344--16414	34	2.1	34	84	5	90	47	11	22	18	1.80
16078--17115	171	6.1	170	83	2	1165	44	12	20	22	1.84
16085--17080	342	2.9	341	87	1	1363	45	12	20	21	1.84
16686--16756	34	2.1	34	83	0	88	45	14	25	15	1.84
16857--16924	34	2.0	34	88	0	100	50	11	20	17	1.77
17103--17344	110	2.2	110	83	3	301	45	14	20	20	1.85
17348--17977	217	2.9	215	80	4	649	39	17	19	23	1.92
17350--17977	326	1.9	327	84	3	827	39	17	19	23	1.93
17350--17977	109	5.8	109	81	2	627	39	17	19	23	1.93
17952--18001	23	2.2	23	92	0	82	28	24	22	26	1.99
17986--18156	88	1.9	88	83	4	220	40	15	21	22	1.90
18298--18521	110	2.0	110	89	0	340	37	15	10	36	1.82
20608--20632	13	1.9	13	100	0	50	4	0	16	80	0.87
23035--23075	13	3.1	13	85	3	55	68	4	12	14	1.36
23737--23787	26	1.9	27	84	4	68	64	7	3	23	1.37
24947--24989	15	2.8	15	82	3	50	23	2	18	55	1.54
24962--25119	15	10.2	15	70	22	69	17	1	29	51	1.55
25007--25177	28	5.9	29	79	9	136	17	1	31	49	1.54
25498--25527	12	2.5	12	94	0	51	13	3	6	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26695--26734	19	2.1	19	85	0	53	5	5	10	80	1.02
29208--29288	22	3.7	21	79	20	87	34	1	0	64	1.02
30011--30058	19	2.5	19	74	9	53	50	0	0	50	1.00
30033--30057	11	2.3	11	100	0	50	52	0	0	48	1.00
33136--33160	11	2.3	11	100	0	50	36	0	20	44	1.52
35829--35912	33	2.5	34	80	3	107	38	14	15	32	1.87
35882--35967	34	2.5	34	82	0	91	39	12	12	34	1.82
36001--36090	34	2.7	34	78	1	92	30	12	17	40	1.86
43925--44341	187	2.2	185	83	5	525	33	13	11	41	1.81
45127--45185	28	2.1	28	87	0	82	25	5	22	47	1.71
46871--46915	21	2.1	21	84	8	56	28	2	6	62	1.33
48537--48761	64	3.5	62	74	11	179	36	15	13	33	1.87
48537--48767	126	1.8	126	81	5	288	36	15	13	33	1.87
48819--49282	243	1.9	243	82	5	589	37	13	13	35	1.85
58453--58485	11	3.1	11	82	8	50	0	6	3	90	0.52
58715--58767	8	6.6	8	88	0	70	5	11	7	75	1.18
58707--58767	16	3.8	16	82	0	77	4	9	6	78	1.07
62521--62560	13	3.1	13	77	0	53	20	15	10	55	1.68
63526--63609	42	2.0	42	97	0	159	30	13	23	32	1.93
69510--69647	23	5.9	22	67	18	57	32	1	3	62	1.21
70052--70105	25	2.2	25	86	6	74	38	1	16	42	1.59
70160--70199	19	2.1	19	85	0	53	22	27	30	20	1.98

Tables:   1

The End!