Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168215.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_45, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 205015
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Warning! 1000 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:79596 original size:12 final size:10
Alignment explanation
Indices: 79590--79782 Score: 86
Period size: 10 Copynumber: 19.0 Consensus size: 10
79580 GATTAATAGT
79590 TATATTAATA
1 TATATTAATA
79600 TATATTAATA
1 TATATTAATA
79610 TAT-TATAAT-
1 TATAT-TAATA
*
79619 TATAAT-ATA
1 TATATTAATA
79628 -ATATTAA-A
1 TATATTAATA
79636 TATATTAATAA
1 TATATTAAT-A
*
79647 AATATTAAT-
1 TATATTAATA
*
79656 TATAATTTATCA
1 TAT-ATTAAT-A
79668 TATAATTAATA
1 TAT-ATTAATA
*
79679 TTATCTTAATA
1 -TATATTAATA
79690 -ATAATTAATA
1 TAT-ATTAATA
79700 TATATTTAATTAA
1 TATA-TTAA-T-A
*
79713 TTTAAGTTAAT-
1 TAT-A-TTAATA
*
79724 TA-ATTAATT
1 TATATTAATA
*
79733 TATATTATTA
1 TATATTAATA
*
79743 TAAAGTATAATA
1 TATA-T-TAATA
*
79755 AATATT-ATA
1 TATATTAATA
79764 -ATATTAAT-
1 TATATTAATA
79772 TATTATTAATA
1 TA-TATTAATA
79783 ATAATAACAA
Statistics
Matches: 141, Mismatches: 17, Indels: 49
0.68 0.08 0.24
Matches are distributed among these distances:
8 17 0.12
9 26 0.18
10 45 0.32
11 25 0.18
12 19 0.13
13 4 0.03
14 5 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (10 bp):
TATATTAATA
Found at i:79634 original size:37 final size:37
Alignment explanation
Indices: 79591--79661 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
79581 ATTAATAGTT
* *
79591 ATATTAATATATATTAATATATTA-TAATTATAATATA
1 ATATTAA-ATATATTAATAAAATATTAATTATAATATA
79628 ATATTAAATATATTAATAAAATATTAATTATAAT
1 ATATTAAATATATTAATAAAATATTAATTATAAT
79662 TTATCATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 14 0.45
37 17 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (37 bp):
ATATTAAATATATTAATAAAATATTAATTATAATATA
Found at i:79688 original size:44 final size:43
Alignment explanation
Indices: 79611--79707 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
79601 ATATTAATAT
79611 ATTATAA-TTATAATATAATATTAAATATATTAATAAAATATTA
1 ATTATAATTTATAATATAATATTAAATATATTAATAAAA-ATTA
* * *
79654 ATTATAATTTATCATAT-A-ATTAATATTATCTTAATAATAATTA
1 ATTATAATTTATAATATAATATTAA-A-TATATTAATAAAAATTA
79697 A-TATATATTTA
1 ATTATA-ATTTA
79708 ATTAATTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
42 9 0.19
43 19 0.40
44 19 0.40
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (43 bp):
ATTATAATTTATAATATAATATTAAATATATTAATAAAAATTA
Found at i:79695 original size:21 final size:21
Alignment explanation
Indices: 79593--79709 Score: 76
Period size: 21 Copynumber: 5.8 Consensus size: 21
79583 TAATAGTTAT
79593 ATTAATATATA-TTAAT-ATA
1 ATTAATATATATTTAATAATA
* *
79612 TTATAAT-TATA-AT-ATAAT-
1 AT-TAATATATATTTAATAATA
*
79630 ATTAA-ATATA-TTAATAAAA
1 ATTAATATATATTTAATAATA
79649 TATTAAT-TATAATTT-ATCATATA
1 -ATTAATATAT-ATTTAAT-A-ATA
79672 ATTAATAT-TATCTTAATAATA
1 ATTAATATATAT-TTAATAATA
79693 ATTAATATATATTTAAT
1 ATTAATATATATTTAAT
79710 TAATTTAAGT
Statistics
Matches: 77, Mismatches: 6, Indels: 28
0.69 0.05 0.25
Matches are distributed among these distances:
17 8 0.10
18 7 0.09
19 8 0.10
20 12 0.16
21 21 0.27
22 16 0.21
23 5 0.06
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAATATATATTTAATAATA
Found at i:79737 original size:33 final size:34
Alignment explanation
Indices: 79651--79738 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 34
79641 TAATAAAATA
* *
79651 TTAATT-A-TAATTTATCATATAATTAATATTATC
1 TTAATTAATTAATTTAT-ATTTAATTAATATTAAC
* *
79684 TTAATAATAATTAATATATATTTAATTAAT-TTAAG
1 TTAAT--TAATTAATTTATATTTAATTAATATTAAC
79719 TTAATTAATTAATTTATATT
1 TTAATTAATTAATTTATATT
79739 ATTATAAAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
33 19 0.41
35 9 0.20
36 11 0.24
37 7 0.15
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (34 bp):
TTAATTAATTAATTTATATTTAATTAATATTAAC
Found at i:79917 original size:10 final size:10
Alignment explanation
Indices: 79898--79936 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
79888 ATATTAATGC
*
79898 TAATTTATTA
1 TAATTAATTA
79908 TAATTAATTA
1 TAATTAATTA
79918 TAA-TAATTA
1 TAATTAATTA
79927 TAAATTAATT
1 T-AATTAATT
79937 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 7 0.27
10 14 0.54
11 5 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
TAATTAATTA
Found at i:79974 original size:15 final size:16
Alignment explanation
Indices: 79945--79988 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
79935 TTTTTATTTA
79945 ATAATTATATATTAAAT
1 ATAA-TATATATTAAAT
*
79962 ATAATATAT-TTAATT
1 ATAATATATATTAAAT
79977 ATAATATTATAT
1 ATAATA-TATAT
79989 AGTTATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.46
16 8 0.33
17 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATAATATATATTAAAT
Found at i:79982 original size:20 final size:20
Alignment explanation
Indices: 79906--79989 Score: 57
Period size: 20 Copynumber: 4.2 Consensus size: 20
79896 GCTAATTTAT
*
79906 TATAATTAATTATAATA-AT
1 TATAATTAATTATAATATAA
* * *
79925 TATAAATTAATTTTTATTTAA
1 TAT-AATTAATTATAATATAA
*
79946 TA-ATTATATATTA-AATATAA
1 TATAAT-TA-ATTATAATATAA
* *
79966 TATATTTAATTATAATATTA
1 TATAATTAATTATAATATAA
79986 TATA
1 TATA
79990 GTTATTAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
19 9 0.18
20 32 0.64
21 9 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAATTAATTATAATATAA
Found at i:79986 original size:34 final size:32
Alignment explanation
Indices: 79906--79989 Score: 83
Period size: 34 Copynumber: 2.8 Consensus size: 32
79896 GCTAATTTAT
*
79906 TATAATTAATTATAATA--AT-TATAAATTAA
1 TATATTTAATTATAATATTATATATAAATTAA
79935 T-T-TTT-ATT-TAATAATTATATATTAAATATAA
1 TATATTTAATTATAAT-ATTATATA-TAAAT-TAA
79966 TATATTTAATTATAATATTATATA
1 TATATTTAATTATAATATTATATA
79990 GTTATTAAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
25 4 0.09
26 4 0.09
27 2 0.05
28 3 0.07
29 3 0.07
30 5 0.11
31 4 0.09
32 1 0.02
33 3 0.07
34 11 0.25
35 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
TATATTTAATTATAATATTATATATAAATTAA
Found at i:80090 original size:53 final size:52
Alignment explanation
Indices: 79904--80096 Score: 137
Period size: 53 Copynumber: 3.6 Consensus size: 52
79894 ATGCTAATTT
* **
79904 ATTATAAT-TAATTATAATAATTATAA-ATTA-ATTTTTATTTAATAATT-ATA
1 ATTATAATATAATAAT-ATAATTATAATATTATATAGTTATTTAAT-ATTAATA
* * *
79954 TATTA-AATATAATATATTTAATTATAATATTATATAGTTATTAAAAAATTAATA
1 -ATTATAATATAATA-ATATAATTATAATATTATATAGTTATT-TAATATTAATA
* * *
80008 ATTATGACTATTTATAATAATAGTTATTATATTCTTATATTAGCTTATTTAATATTAATA
1 ATTAT-A--A--TATAATAATA-TAATTATAATATTATA-TAG-TTATTTAATATTAATA
*
80068 ATTATAATATAATAA-ATAATTATACTATT
1 ATTATAATATAATAATATAATTATAATATT
80097 TAATTAATTT
Statistics
Matches: 112, Mismatches: 15, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
50 3 0.03
51 17 0.15
52 6 0.05
53 24 0.21
54 6 0.05
55 9 0.08
57 2 0.02
58 2 0.02
59 21 0.19
60 17 0.15
61 5 0.04
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (52 bp):
ATTATAATATAATAATATAATTATAATATTATATAGTTATTTAATATTAATA
Found at i:82203 original size:20 final size:21
Alignment explanation
Indices: 82178--82225 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
82168 CACATAGAGT
82178 ATCGATCACCTAAAG-AACA-G
1 ATCGATCACCTAAAGCAA-AGG
*
82198 ATCGATCCCCTAAAGCAAAGG
1 ATCGATCACCTAAAGCAAAGG
82219 ATCGATC
1 ATCGATC
82226 GGGTAAGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.40, C:0.27, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGATCACCTAAAGCAAAGG
Found at i:87900 original size:13 final size:13
Alignment explanation
Indices: 87882--87907 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
87872 ATCTTTCATT
87882 CTATTGTTGTGTG
1 CTATTGTTGTGTG
87895 CTATTGTTGTGTG
1 CTATTGTTGTGTG
87908 GCCTAATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (13 bp):
CTATTGTTGTGTG
Found at i:88026 original size:24 final size:24
Alignment explanation
Indices: 87999--88046 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
87989 AGGGGGGCAA
87999 ATATTGGTATGAAAATTTGATGAT
1 ATATTGGTATGAAAATTTGATGAT
88023 ATATTGGTATGAAAATTTGATGAT
1 ATATTGGTATGAAAATTTGATGAT
88047 GCTTTGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.42
Consensus pattern (24 bp):
ATATTGGTATGAAAATTTGATGAT
Found at i:89874 original size:26 final size:26
Alignment explanation
Indices: 89845--89898 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
89835 AATAATTATT
*
89845 ATAATATATTATTTATTTA-TATATAA
1 ATAAT-TATTATATATTTATTATATAA
*
89871 ATAATTTTTATATATTTATTATATAA
1 ATAATTATTATATATTTATTATATAA
89897 AT
1 AT
89899 TACATTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATAATTATTATATATTTATTATATAA
Found at i:89909 original size:26 final size:25
Alignment explanation
Indices: 89858--89909 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
89848 ATATATTATT
** *
89858 TATTTATATATAAATAATTTTTATA
1 TATTTATATATAAATAACATTCATA
*
89883 TATTTATTATATAAATTACATTCATA
1 TATTTA-TATATAAATAACATTCATA
89909 T
1 T
89910 TATAAGCTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
TATTTATATATAAATAACATTCATA
Found at i:90008 original size:22 final size:21
Alignment explanation
Indices: 89957--90011 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
89947 TCTATATTAT
*
89957 TTAATA-ATTATTTTAATAAA
1 TTAATATATTATTTTAAGAAA
*
89977 TT-ATATTATTATATTTTAGAAA
1 TTAATA-TATTAT-TTTAAGAAA
89999 TTAATATATTATT
1 TTAATATATTATT
90012 AAATAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 3 0.10
20 2 0.07
21 6 0.21
22 15 0.52
23 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAATATATTATTTTAAGAAA
Found at i:90038 original size:18 final size:19
Alignment explanation
Indices: 90017--90094 Score: 60
Period size: 18 Copynumber: 4.2 Consensus size: 19
90007 TTATTAAATA
90017 ATAAT-TATTTACAATATT
1 ATAATATATTTACAATATT
*
90035 ATAA-ATA-TTA-ATTATAT
1 ATAATATATTTACAATAT-T
*
90052 ATAATATAGTTTATAA-A-T
1 ATAATATA-TTTACAATATT
90070 ATAATATATTTACATTATATT
1 ATAATATATTTACA--ATATT
90091 ATAA
1 ATAA
90095 GATAATAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 17
0.70 0.04 0.25
Matches are distributed among these distances:
16 4 0.09
17 13 0.28
18 18 0.38
19 1 0.02
20 5 0.11
21 6 0.13
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (19 bp):
ATAATATATTTACAATATT
Found at i:90046 original size:25 final size:26
Alignment explanation
Indices: 90002--90104 Score: 104
Period size: 29 Copynumber: 3.8 Consensus size: 26
89992 TTAGAAATTA
90002 ATATATTATTAAATAATAATTATTTAC
1 ATATATTA-TAAATAATAATTATTTAC
*
90029 A-ATATTATAAATATTAATTATATATA-
1 ATATATTATAAATAATAATTAT-T-TAC
90055 ATATAGTTTATAAAT-ATAATATATTTAC
1 ATATA--TTATAAATAATAAT-TATTTAC
90083 ATTATATTATAAGATAATAATT
1 A-TATATTATAA-ATAATAATT
90105 CCATATTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 19
0.75 0.02 0.22
Matches are distributed among these distances:
25 13 0.20
26 8 0.12
27 14 0.22
28 9 0.14
29 20 0.31
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
ATATATTATAAATAATAATTATTTAC
Found at i:90103 original size:29 final size:27
Alignment explanation
Indices: 90002--90103 Score: 104
Period size: 27 Copynumber: 3.7 Consensus size: 27
89992 TTAGAAATTA
90002 ATATATTATTAAATAATAAT-TATTTAC
1 ATATATTA-TAAATAATAATATATTTAC
* *
90029 A-ATATTATAAATATTAATTATATATA-
1 ATATATTATAAATAATAA-TATATTTAC
90055 ATATAGTTTATAAAT-ATAATATATTTAC
1 ATATA--TTATAAATAATAATATATTTAC
90083 ATTATATTATAAGATAATAAT
1 A-TATATTATAA-ATAATAAT
90104 TCCATATTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 16
0.76 0.05 0.20
Matches are distributed among these distances:
25 9 0.15
26 8 0.13
27 22 0.35
28 6 0.10
29 17 0.27
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
ATATATTATAAATAATAATATATTTAC
Found at i:90414 original size:10 final size:9
Alignment explanation
Indices: 90399--90443 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
90389 AATAATACTT
90399 ATTATTAATA
1 ATTATTAA-A
90409 ATTATTAAA
1 ATTATTAAA
*
90418 ATTATAAATA
1 ATTATTAA-A
90428 ATTAATTAAA
1 ATT-ATTAAA
90438 ATTATT
1 ATTATT
90444 TTATTATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 11 0.35
10 16 0.52
11 4 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATTATTAAA
Found at i:90421 original size:19 final size:20
Alignment explanation
Indices: 90399--90443 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
90389 AATAATACTT
90399 ATTATTAATAATT-ATTAAA
1 ATTATTAATAATTAATTAAA
*
90418 ATTATAAATAATTAATTAAA
1 ATTATTAATAATTAATTAAA
90438 ATTATT
1 ATTATT
90444 TTATTATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATTAATAATTAATTAAA
Found at i:91546 original size:10 final size:11
Alignment explanation
Indices: 91531--91563 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
91521 CTAATATATC
91531 ATAATTTAATT
1 ATAATTTAATT
91542 A-AATTT-ATT
1 ATAATTTAATT
91551 ATAATTTAATT
1 ATAATTTAATT
91562 AT
1 AT
91564 TTATACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.20
10 10 0.50
11 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATAATTTAATT
Found at i:91658 original size:25 final size:23
Alignment explanation
Indices: 91624--91687 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 23
91614 TACATGCATA
91624 TTAATTATTAATATTTAA-TAATTTGT
1 TTAA-TATTAATATTTAATTAA--T-T
*
91650 TTAATATTAATATATAATTAATT
1 TTAATATTAATATTTAATTAATT
91673 TT-ATATTAATATTTA
1 TTAATATTAATATTTA
91688 TCTAATAGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 12 0.34
23 3 0.09
24 1 0.03
25 12 0.34
26 7 0.20
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTAATATTAATATTTAATTAATT
Found at i:91719 original size:19 final size:22
Alignment explanation
Indices: 91697--91790 Score: 117
Period size: 23 Copynumber: 4.3 Consensus size: 22
91687 ATCTAATAGC
91697 TTAATTAT-ATT-ATA-AATAA
1 TTAATTATAATTAATATAATAA
91716 TTAATTATAATTAAATATAATAA
1 TTAATTATAATT-AATATAATAA
91739 TTAATTATAATTAAATATAATAA
1 TTAATTATAATT-AATATAATAA
91762 TTAATAGTATAATTAATA-AAT-A
1 TTAAT--TATAATTAATATAATAA
91784 TTAATTA
1 TTAATTA
91791 CTTTAATATT
Statistics
Matches: 69, Mismatches: 0, Indels: 11
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.12
20 5 0.07
22 9 0.13
23 36 0.52
24 4 0.06
25 7 0.10
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (22 bp):
TTAATTATAATTAATATAATAA
Found at i:91725 original size:10 final size:10
Alignment explanation
Indices: 91712--91764 Score: 63
Period size: 10 Copynumber: 5.1 Consensus size: 10
91702 TATATTATAA
91712 ATAATTAATT
1 ATAATTAATT
91722 ATAATTAAATAT
1 ATAATT-AAT-T
91734 AATAATTAATT
1 -ATAATTAATT
*
91745 ATAATTAAAT
1 ATAATTAATT
91755 ATAA-TAATT
1 ATAATTAATT
91764 A
1 A
91765 ATAGTATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 5 0.13
10 19 0.50
11 4 0.11
12 4 0.11
13 6 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
ATAATTAATT
Found at i:91740 original size:13 final size:13
Alignment explanation
Indices: 91711--91784 Score: 72
Period size: 13 Copynumber: 6.0 Consensus size: 13
91701 TTATATTATA
91711 AATAATT-AAT-T
1 AATAATTAAATAT
91722 -ATAATTAAATAT
1 AATAATTAAATAT
91734 AATAATT-AAT-T
1 AATAATTAAATAT
91745 -ATAATTAAATAT
1 AATAATTAAATAT
91757 AATAATTAATAGTAT
1 AATAATTAA-A-TAT
91772 AATTAA-TAAATAT
1 AA-TAATTAAATAT
91785 TAATTACTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
10 12 0.22
11 7 0.13
12 5 0.09
13 17 0.31
14 2 0.04
15 8 0.15
16 3 0.06
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (13 bp):
AATAATTAAATAT
Found at i:92294 original size:17 final size:17
Alignment explanation
Indices: 92272--92310 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
92262 GGGTTATAAC
*
92272 ATAATT-ATATTATATTT
1 ATAATTAATATTA-ATAT
92289 ATAATTAATATTAATAT
1 ATAATTAATATTAATAT
92306 ATAAT
1 ATAAT
92311 AATTAAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATTAATATTAATAT
Found at i:92314 original size:20 final size:19
Alignment explanation
Indices: 92272--92357 Score: 61
Period size: 20 Copynumber: 4.3 Consensus size: 19
92262 GGGTTATAAC
*
92272 ATAATT-ATATTATAT-TT
1 ATAATTAATATTATATATA
92289 ATAATTAATATTAATATATA
1 ATAATTAATATT-ATATATA
*
92309 ATAATTAAAATCTTAATATAATA
1 ATAATT--AATATT-ATAT-ATA
*
92332 ATAAGTTATAAATTATA-ATA
1 ATAA-TTA-ATATTATATATA
92352 ATAATT
1 ATAATT
92358 TAAATTATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
17 6 0.11
18 5 0.09
19 6 0.11
20 14 0.25
22 14 0.25
23 10 0.18
24 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (19 bp):
ATAATTAATATTATATATA
Found at i:92706 original size:17 final size:17
Alignment explanation
Indices: 92680--92718 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
92670 AATTGTATAA
*
92680 ATTAAT-TAATAAATTT
1 ATTAATATAATAAAATT
92696 ATTAATATAATAAAATT
1 ATTAATATAATAAAATT
92713 A-TAATA
1 ATTAATA
92719 AGTTCAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAATATAATAAAATT
Found at i:92860 original size:13 final size:13
Alignment explanation
Indices: 92842--92997 Score: 66
Period size: 13 Copynumber: 11.3 Consensus size: 13
92832 ATAAATTATA
92842 ATATTTATAATTT
1 ATATTTATAATTT
92855 ATATTTATTAAAATTT
1 ATATTTA-T--AATTT
**
92871 ATATTAATATAATAA
1 ATATT--TATAATTT
*
92886 ATAATTATAAATATT
1 ATATTTAT-AAT-TT
*
92901 ATATATTAT-ACTT
1 ATAT-TTATAATTT
*
92914 ATATTTATAATAT
1 ATATTTATAATTT
* *
92927 ATATTAATAAATT
1 ATATTTATAATTT
* * *
92940 ATA-TAATTACTT
1 ATATTTATAATTT
*
92952 ATAATTATAAATAATT
1 ATATTTAT-AAT--TT
*
92968 ATATTTATTAA-AT
1 ATATTTA-TAATTT
*
92981 ATATTGATAATTT
1 ATATTTATAATTT
92994 ATAT
1 ATAT
92998 ATATTAACTA
Statistics
Matches: 107, Mismatches: 21, Indels: 30
0.68 0.13 0.19
Matches are distributed among these distances:
12 17 0.16
13 46 0.43
14 6 0.06
15 10 0.09
16 24 0.22
17 2 0.02
18 2 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (13 bp):
ATATTTATAATTT
Found at i:92908 original size:16 final size:16
Alignment explanation
Indices: 92831--92982 Score: 65
Period size: 16 Copynumber: 9.6 Consensus size: 16
92821 TTTCTTAAAA
*
92831 TATAAATTATAATAT-T
1 TATAAA-TATTATATAT
92847 TAT-AAT-TTATAT-T
1 TATAAATATTATATAT
92860 TATTAAA-ATT-TATAT
1 TA-TAAATATTATATAT
*
92875 TAATATAATA-AATA-AT
1 T-ATA-AATATTATATAT
92891 TATAAATATTATATAT
1 TATAAATATTATATAT
** *
92907 TATACTTA-TATTTAT
1 TATAAATATTATATAT
* * *
92922 AATATATATTAATAAAT
1 TATAAATATT-ATATAT
92939 TATATAATTACTTATA-AT
1 TATA-AA-TA-TTATATAT
92957 TATAAATAATTATAT-T
1 TATAAAT-ATTATATAT
92973 TATTAAATAT
1 TA-TAAATAT
92983 ATTGATAATT
Statistics
Matches: 105, Mismatches: 13, Indels: 36
0.68 0.08 0.23
Matches are distributed among these distances:
13 8 0.08
14 9 0.09
15 27 0.26
16 29 0.28
17 18 0.17
18 7 0.07
19 5 0.05
20 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (16 bp):
TATAAATATTATATAT
Found at i:92944 original size:28 final size:28
Alignment explanation
Indices: 92913--93008 Score: 76
Period size: 28 Copynumber: 3.4 Consensus size: 28
92903 ATATTATACT
92913 TATATTTA-TAATATATATTAATAAATTA
1 TATATTTACTAATATATATT-ATAAATTA
* *
92941 TATAATTACT--TATA-ATTATAAATAA
1 TATATTTACTAATATATATTATAAATTA
* *
92966 TTATATTTATTAA-ATATATTGATAATTTA
1 -TATATTTACTAATATATATT-ATAAATTA
92995 TATATATTAACTAA
1 TATAT-TT-ACTAA
93009 ATCATTAACT
Statistics
Matches: 53, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
25 7 0.13
26 11 0.21
27 7 0.13
28 15 0.28
29 9 0.17
30 4 0.08
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (28 bp):
TATATTTACTAATATATATTATAAATTA
Found at i:92975 original size:22 final size:22
Alignment explanation
Indices: 92886--92975 Score: 64
Period size: 22 Copynumber: 4.1 Consensus size: 22
92876 AATATAATAA
92886 ATAATTATAAAT-ATTATATATT
1 ATAATTATAAATAATTATAT-TT
* * *
92908 ATACTTATATTTATAATATATATTA
1 ATAATTATA--AATAAT-TATATTT
*
92933 ATAAATTAT--ATAA-T-TACTT
1 AT-AATTATAAATAATTATATTT
92952 ATAATTATAAATAATTATATTT
1 ATAATTATAAATAATTATATTT
92974 AT
1 AT
92976 TAAATATATT
Statistics
Matches: 52, Mismatches: 7, Indels: 18
0.68 0.09 0.23
Matches are distributed among these distances:
18 6 0.12
19 5 0.10
20 5 0.10
21 1 0.02
22 18 0.35
24 2 0.04
25 5 0.10
26 10 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTATAAATAATTATATTT
Found at i:93055 original size:71 final size:69
Alignment explanation
Indices: 92886--93056 Score: 167
Period size: 67 Copynumber: 2.5 Consensus size: 69
92876 AATATAATAA
* * * *
92886 ATAATTATAAATATTATATAT-TA-T-ACTTATATTTATAATATATATTAATAAATTATATAATT
1 ATAATTATAAATAATATATATATATTAACTTATATTGATAATATATATTAATAAACTAAATAATT
92948 ACTT
66 ACTT
* * * * *
92952 ATAATTATAAATAAT-TATATTTATTAA-ATATATTGATAATTTATA-TATATTAACTAAATCAT
1 ATAATTATAAATAATATATATATATTAACTTATATTGATAATATATATTA-ATAAACTAAATAAT
93014 TAACTT
65 T-ACTT
*
93020 GTAA-TATCAAATAATATATATATAGTTAACTTATATT
1 ATAATTAT-AAATAATATATATATA-TTAACTTATATT
93057 TAATTACAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
65 5 0.06
66 18 0.21
67 30 0.35
68 15 0.18
69 7 0.08
70 4 0.05
71 6 0.07
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (69 bp):
ATAATTATAAATAATATATATATATTAACTTATATTGATAATATATATTAATAAACTAAATAATT
ACTT
Found at i:93449 original size:12 final size:12
Alignment explanation
Indices: 93396--93456 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
93386 ATTATAATTA
93396 TTATAATATT-AT
1 TTATAA-ATTAAT
*
93408 CTATAATATTAAT
1 TTATAA-ATTAAT
*
93421 TTATATTAATTATT
1 TTATA--AATTAAT
93435 TTATAAATTAAT
1 TTATAAATTAAT
93447 TTAATAAATT
1 TT-ATAAATT
93457 TTTTTATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
12 17 0.41
13 13 0.32
14 10 0.24
15 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (12 bp):
TTATAAATTAAT
Found at i:93453 original size:13 final size:13
Alignment explanation
Indices: 93410--93456 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
93400 AATATTATCT
93410 ATAATATTAATTTA
1 ATAA-ATTAATTTA
* *
93424 TATTAATT-ATTTT
1 -ATAAATTAATTTA
93437 ATAAATTAATTTA
1 ATAAATTAATTTA
93450 ATAAATT
1 ATAAATT
93457 TTTTTATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 3 0.11
15 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATAAATTAATTTA
Found at i:93465 original size:21 final size:24
Alignment explanation
Indices: 93413--93463 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
93403 ATTATCTATA
*
93413 ATATTAATTTATATTAATTATTTT
1 ATATTAATTTATATAAATTATTTT
*
93437 ATAAATTAATTTA-ATAAATTTTTTT
1 AT--ATTAATTTATATAAATTATTTT
93462 AT
1 AT
93464 TATAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 2 0.09
25 12 0.52
26 9 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATATTAATTTATATAAATTATTTT
Found at i:93706 original size:26 final size:26
Alignment explanation
Indices: 93671--93749 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
93661 ATTAATTATG
93671 AATTATTATTTAAATATAATATCTATT
1 AATTA-TATTTAAATATAATATCTATT
* * *
93698 AATTATATTTACATAATATTAT-AATT
1 AATTATATTTAAAT-ATAATATCTATT
* *
93724 AATTATAATT-AATTTAATTATCTATT
1 AATTATATTTAAATATAA-TATCTATT
93750 TCAAATCGTA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
24 2 0.05
25 5 0.12
26 23 0.56
27 11 0.27
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
AATTATATTTAAATATAATATCTATT
Found at i:93926 original size:25 final size:25
Alignment explanation
Indices: 93898--93945 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
93888 TGTTCCTATA
93898 ATAT-TTTATAAATATTTAAAATATT
1 ATATGTTTA-AAATATTTAAAATATT
* *
93923 ATATGTTTAAATTATTTGAAATA
1 ATATGTTTAAAATATTTAAAATA
93946 AATTCTATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
ATATGTTTAAAATATTTAAAATATT
Found at i:94142 original size:17 final size:19
Alignment explanation
Indices: 94109--94147 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
94099 ATTTAGGAAA
*
94109 TTTATAATAATTTAATTGT
1 TTTATAATAATTTAATTAT
94128 TTTATAAT-A-TTAATTAT
1 TTTATAATAATTTAATTAT
94145 TTT
1 TTT
94148 GTTATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 1 0.05
19 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTATAATAATTTAATTAT
Found at i:94267 original size:17 final size:18
Alignment explanation
Indices: 94248--94313 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 18
94238 TAACTAATAA
94248 TTAATAATTATTATTAA-
1 TTAATAATTATTATTAAT
*
94265 TT-ATAAATATATTGTTCAAT
1 TTAAT-AAT-TATTATT-AAT
94285 TTAATATATTGATATATTAAT
1 TTAATA-ATT-AT-TATTAAT
94306 TTAATAAT
1 TTAATAAT
94314 AATATATCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
16 2 0.05
17 5 0.13
18 6 0.15
19 2 0.05
20 6 0.15
21 15 0.38
22 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (18 bp):
TTAATAATTATTATTAAT
Found at i:94340 original size:13 final size:13
Alignment explanation
Indices: 94322--94369 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
94312 ATAATATATC
94322 AATATTTAGTATA
1 AATATTTAGTATA
94335 AATATTTA-TACTA
1 AATATTTAGTA-TA
* *
94348 ATTA-ATAGTATA
1 AATATTTAGTATA
94360 AATATTTAGT
1 AATATTTAGT
94370 TTATTAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
12 9 0.32
13 19 0.68
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (13 bp):
AATATTTAGTATA
Found at i:94380 original size:24 final size:24
Alignment explanation
Indices: 94328--94381 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
94318 TATCAATATT
94328 TAGTATAAATATTTATACTAATTAA
1 TAGTATAAATATTTATA-TAATTAA
*
94353 TAGTATAAATATTTAGT-TTATTAA
1 TAGTATAAATATTTA-TATAATTAA
94377 TAGTA
1 TAGTA
94382 ATTAATTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.41
25 15 0.56
26 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (24 bp):
TAGTATAAATATTTATATAATTAA
Found at i:94653 original size:20 final size:20
Alignment explanation
Indices: 94616--94654 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
94606 ATAAATTATA
*
94616 TAATTTATTATTTGTAATTG
1 TAATTTATTATATGTAATTG
94636 TAATTTATATATAT-TAATT
1 TAATTTAT-TATATGTAATT
94655 AATTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TAATTTATTATATGTAATTG
Found at i:94980 original size:21 final size:22
Alignment explanation
Indices: 94938--94981 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
94928 ATAAAATCTA
*
94938 ATTATATAATTTTGATATATAT
1 ATTATATAATTTAGATATATAT
94960 ATTAT-TAATTTAGA-ATAATAT
1 ATTATATAATTTAGATAT-ATAT
94981 A
1 A
94982 ATAATAAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 2 0.10
21 13 0.65
22 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (22 bp):
ATTATATAATTTAGATATATAT
Found at i:95262 original size:28 final size:30
Alignment explanation
Indices: 95230--95302 Score: 84
Period size: 28 Copynumber: 2.6 Consensus size: 30
95220 TTAATAATCA
95230 ATTTATTAAGTTATAAAT-AAAT-TTAATT
1 ATTTATTAAGTTATAAATGAAATATTAATT
* *
95258 ATTTA-T-ATTTATAATTGAAATATTAATT
1 ATTTATTAAGTTATAAATGAAATATTAATT
*
95286 A-TTATTAAGTAATAAAT
1 ATTTATTAAGTTATAAAT
95303 TAATAATCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
26 8 0.22
27 8 0.22
28 13 0.36
29 7 0.19
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (30 bp):
ATTTATTAAGTTATAAATGAAATATTAATT
Found at i:95960 original size:25 final size:24
Alignment explanation
Indices: 95932--95989 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 24
95922 AAATATTAAT
*
95932 AAATTACTATTATTTTATTTTGGAC
1 AAATTA-TATTATTTTATTTTGAAC
95957 -AA--ATATTATTTTATTTTGAAC
1 AAATTATATTATTTTATTTTGAAC
95978 AAACTTATATTA
1 AAA-TTATATTA
95990 ACAAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
21 17 0.61
22 3 0.11
24 2 0.07
25 6 0.21
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (24 bp):
AAATTATATTATTTTATTTTGAAC
Found at i:95963 original size:21 final size:21
Alignment explanation
Indices: 95939--95980 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
95929 AATAAATTAC
*
95939 TATTATTTTATTTTGGACAAA
1 TATTATTTTATTTTGAACAAA
95960 TATTATTTTATTTTGAACAAA
1 TATTATTTTATTTTGAACAAA
95981 CTTATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (21 bp):
TATTATTTTATTTTGAACAAA
Found at i:97055 original size:181 final size:179
Alignment explanation
Indices: 96722--98586 Score: 1343
Period size: 181 Copynumber: 10.4 Consensus size: 179
96712 ATTTATATTA
* * * * * * *
96722 AAATAGTTATGACTATTTGAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATATCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * ** * *
96787 AAGAATTATTTCTGTTCATACAAGCTTATTCAAAATAAAGCAATACTAATCTAATAATA-TTCTA
66 AACAATT-TTTCTATTCATACTAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC-A
* * * *
96851 AAAATTAATAACTAAAGGATTTAAAAAATAAATTTGTTTGCTGAACCAATTC
129 AAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTAC-CAACCAATTC
* * * * ** * *
96903 AAATGGTTAAGACTATATGAACAATTATCTATTTCAAATTGTTACGACCTTTTGTCTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * *
96968 AATAATTTTCTCAATTCATACTAGCTTATTCGAAATAAAATAA-AATGAATTTATTAATATTTCA
66 AACAATTTT-TCTATTCATACTAGCTTATTCGAAATAAAATAATACT-AATTTATTAATATTTCA
* * * *
97032 AAAAATAATAAGTAAGAGATTTAAAAAAT-AATTCTATTTACCTAACCAGTTC
129 AAAATTAATAAGTAAAAGATTTAAAAAATAAATT-TGTTTACC-AACCAATTC
* * * * * * *
97084 AAAAAATTAT-ACTAATTGAATAATTATATATTTCAAATCATTATTACTTTTTATTTTGTCATAC
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATA-
* * * * * *
97148 AAAAAATGTTTT-TGTTCATA-TAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTC
65 AAACAAT-TTTTCTATTCATACT-AGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC
* * * * * *
97211 AAAAATTAATAAGT----GATTTAGACAATAAAATCTATGTAT-CAAACTAGTTC
128 AAAAATTAATAAGTAAAAGATTTAAAAAAT-AAAT-T-TGTTTACCAACCAATTC
* * * * **
97261 AAATAGTTATGACCATTTGAGTAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTTGTAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * **
97326 AACAATTGTTTCTATTCATACAAGCTTATTTG-CATTAAATAATACTAATTTATTAATATTTTGA
66 AACAATT-TTTCTATTCATACTAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAA
* * * * *
97390 TAATTAGTAAGTAAAAAAATTT-TAAAAT--A--TGTTTACCACACTAGA-TC
130 AAATTAATAAGT-AAAAGATTTAAAAAATAAATTTGTTTACCA-ACCA-ATTC
* * * *
97437 AAATAATCATGACAATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGATTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * **
97502 AAGAGTTATTTCAATTCATA-TAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCC
66 AACAATT-TTTCTATTCATACT-AGCTTATTCGAAATAAAATAATACTAATTTATTAAT-ATTTC
* * * * *
97566 AAAAATTAATAA-TAAAGAGATTTAAAAAATGACTTTGTTTACTAAACAAATTT
128 AAAAATTAATAAGTAAA-AGATTTAAAAAATAAATTTGTTTAC-CAACCAATTC
* * * * * * * ** *
97619 AAATAATTAGGACTGTTTGAATAATTATCTATTTGAAATAACTATAACCTTTTGTTTCATAATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * * *
97684 AAGAATTTTTTCTGTCCAT-CTAAGCATATTTCG-AATAAAATAATACAAATTTATGAATA-TT-
66 AACAA-TTTTTCTATTCATACT-AGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTC
* *
97745 AAGACAATTAATAAGTAAAAGATTT-AAAAATAAATCTGTTTACCAAACAAGTTC
128 AA-A-AATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAACCAA-TTC
* * * * * * * * *
97799 TAATCA-TTATGGCTGTTTAAACAATTATTTATTTCAACAT-GTTATG-CTTTTTTATTTTGTCA
1 AAAT-AGTTATGACTATTTGAATAATTATCTATTTCAA-ATCATTATGAC-CTTTTGTTTTGTCA
* * * * * * *
97861 TAAAACAATTATTTTTATTCATACAAGTTTTATTTGAATTAAAATAATATTAATTAATTAATATT
63 TAAAACAATT-TTTCTATTCATACTAG-CTTATTCGAAATAAAATAATACTAATTTATTAATATT
** * * * * *
97926 TTGACAATTAATAAATAAAAGATTTAAAAAATAAATAT-TTTGCCAAACAAGTTC
126 TCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAACCAA-TTC
* * * * * * *
97980 AAATAGTCATTAATATTTCAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTTTAATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * * *
98045 AACACTTGTTTCAATTCATA-TAAGCTTATTTGAAGTAAGATAATACTAATTTATTAATATTCCA
66 AACAATT-TTTCTATTCATACT-AGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCA
* * * * * **
98109 AAAATTAATGAGTGAGAGAATTAAAAAA-AGAATATGTTTACCAAATAAGTTC
129 AAAATTAATAAGTAAAAGATTTAAAAAATA-AATTTGTTTACCAACCAA-TTC
* * * * * *
98161 AAATAATTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACTTTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * * *
98226 AACAATTGGCTT-TGTTCATGCAAGCTTATTTCG-AATAAAATAAT-TTAAATTTATTAATATTC
66 AACAATT--TTTCTATTCATACTAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTT
* * * * *
98288 CAAAAATTAATAAGTAAAA-TTTTAAAAAATAAATATGTTTTCTGAA-CACGTTC
127 CAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTAC-CAACCA-ATTC
* * * * ** *
98341 AAATAGTTATGACTATTTTAAGAATTATCTATTGCAAATCGTTATGAGATTTTTTTTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * * *
98406 ACCAA----TC-GTT-AT--GAGCTTTTTCGAAATAAAATAGTACTAATTTATTAAAATTTCAAA
66 AACAATTTTTCTATTCATACTAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAA
* * * **
98463 AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTATCGAGTAAGTTC
131 AATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAACCAA-TTC
* * * *
98513 AAATAGTTATAACTATTTGAATAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
*
98578 AATAATTTT
66 AACAATTTT
98587 ACTTTATTAA
Statistics
Matches: 1324, Mismatches: 285, Indels: 155
0.75 0.16 0.09
Matches are distributed among these distances:
170 4 0.00
171 48 0.04
172 84 0.06
173 2 0.00
174 8 0.01
175 2 0.00
176 100 0.08
177 90 0.07
178 80 0.06
179 15 0.01
180 324 0.24
181 420 0.32
182 140 0.11
183 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
AACAATTTTTCTATTCATACTAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAA
AATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCAACCAATTC
Found at i:97883 original size:362 final size:360
Alignment explanation
Indices: 96722--98584 Score: 1495
Period size: 361 Copynumber: 5.2 Consensus size: 360
96712 ATTTATATTA
* * * * * * * * * *
96722 AAATAGTTATGACTATTTGAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATATCATAA
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTCATAA
* * ** * * *
96787 AAGAATTATTTCTGTTCATACAAGCTTATTCAAAATAAAGCAATACTAATCTAATAATATTCTAA
66 AACAATTATTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCCAA
* * * * *
96852 AAATTAATAACTAAAG-GATTTAAAAAATAAATTTGTTTGCTGAACCAATTCAAATGGTTAAGAC
131 AAATTAATAA-TAAAGAGATTTAAAAAATAAATATGTTTGCTAAACAAATTCAAATAGTTATGAC
* * ** * * * *
96916 TATATGAACAATTATCTATTTCAAATTGTTACGACCTTTTGTCTTGTCATAAAATAATT-TTCTC
195 TATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTT-TC
* * *
96980 AATTCATACT-AGCTTATTCGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAATAATAA
259 AATTCATACTAAGCTTATTTG-AATAAAATAATACT-AATTTATTAATA-TTCAAAAATTAATAA
* * * * *
97043 GTAAGAGATTTAAAAAATAATTCTATTTACCTAACCAGTTC
321 GTAAAAGATTT-AAAAATAAATCTGTTTACCAAACAAGTTC
* * * * * *
97084 AAAAAATTAT-ACTAATTGAATAATTATATATTTCAAATCATTATTACTTTTTATTTTGTCATAC
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTCATA-
* * * * ** * * *
97148 AAA-AAATGTTTTTGTTCATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTCA
65 AAACAATTATTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCCA
* * * * * *
97212 AAAA-T--TAAT-AAGTGATTTAGACAATAAAATCTATGTAT-C-AAACTAGTTCAAATAGTTAT
130 AAAATTAATAATAAAGAGATTTAAAAAAT-AAA--TATGTTTGCTAAACAAATTCAAATAGTTAT
* * * * * **
97271 GACCATTTGAGTAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTTGTAAAACAATTGTT
192 GACTATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTT
* * * ** * *
97336 TCTATTCATAC-AAGCTTATTTGCATTAAATAATACTAATTTATTAATATTTTGATAATTAGTAA
257 TCAATTCATACTAAGCTTATTTGAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAA
* * * * *
97400 GTAAAAAAATTTTAAAAT--A--TGTTTACCACACTAGATC
321 GT-AAAAGATTTAAAAATAAATCTGTTTACCAAACAAGTTC
* * * * *
97437 AAATAATCATGACAATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGA-TTTGTCATA
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGA-CTTTTTATTTTGTCATA
* * *** * *
97501 AAAGAGTTATTTCAATTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCC
65 AAACAATTATTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAT-ATTCC
* * * * * * *
97566 AAAAATTAATAATAAAGAGATTTAAAAAATGACTTTGTTTACTAAACAAATTTAAATAATTAGGA
129 AAAAATTAATAATAAAGAGATTTAAAAAATAAATATGTTTGCTAAACAAATTCAAATAGTTATGA
* * * * ** * *
97631 CTGTTTGAATAATTATCTATTTGAAATAACTATAACCTTTTGTTTCATAATAAAAGAATTTTTTC
194 CTATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTC
** * * * *
97696 TGTCCAT-CTAAGCATATTTCGAATAAAATAATACAAATTTATGAATATT-AAGACAATTAATAA
259 AATTCATACTAAGCTTATTT-GAATAAAATAATACTAATTTATTAATATTCAA-A-AATTAATAA
97759 GTAAAAGATTTAAAAATAAATCTGTTTACCAAACAAGTTC
321 GTAAAAGATTTAAAAATAAATCTGTTTACCAAACAAGTTC
* * * * * *
97799 TAATCATTATGGCTGTTTAAACAATTATTTATTTCAACAT-GTTATG-CTTTTTTATTTTGTCAT
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAA-ATCATTATGAC-TTTTTATTTTGTCAT
* * ** * * * *
97862 AAAACAATTATTTTTATTCATACAAGTTTTATTTGAATTAAAATAATATTAATTAATTAATATTT
64 AAAACAATTATTTTTGTTCATACAAG-CTTATTCAAAATAAAATAATACTAATTTATTAATATTC
** * * * *
97927 TGACAATTAATAAATAAA-AGATTTAAAAAATAAATAT-TTTGCCAAACAAGTTCAAATAGTCAT
128 CAAAAATTAAT-AATAAAGAGATTTAAAAAATAAATATGTTTGCTAAACAAATTCAAATAGTTAT
* * * * *
97990 TAATATTTCAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTTTAATAAAACACTTGTT
192 GACTATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTT
* *
98055 TCAATTCATA-TAAGCTTATTTGAAGTAAGATAATACTAATTTATTAATATTCCAAAAATTAATG
257 TCAATTCATACTAAGCTTATTTGAA-TAAAATAATACTAATTTATTAATATT-CAAAAATTAATA
* * * * * *
98119 AGTGAGAGAATTAAAAAAAGAATATGTTTACCAAATAAGTTC
320 AGTAAAAGATTTAAAAATA-AATCTGTTTACCAAACAAGTTC
* * *
98161 AAATAATTATGACTATCTAAACAATTATCTATTTCAAAACATTATGACTTTTTGTTTTGTCATAA
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTCATAA
*** * * *
98226 AACAATTGGCTTTGTTCATGCAAGCTTATTTC-GAATAAAATAAT-TTAAATTTATTAATATTCC
66 AACAATTATTTTTGTTCATACAAGCTTA-TTCAAAATAAAATAATACT-AATTTATTAATATTCC
* * * **
98289 AAAAATTAATAAGTAAA-A-TTTTAAAAAATAAATATGTTTTCTGAACACGTTCAAATAGTTATG
129 AAAAATTAATAA-TAAAGAGATTTAAAAAATAAATATGTTTGCTAAACAAATTCAAATAGTTATG
* * * ** ** * * *
98352 ACTATTTTAAGAATTATCTATTGCAAATCGTTATGAGATTTTTTTTTGTCATAAACCAA-----T
193 ACTATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTTT
* * * *
98412 C--GT--TA-TGAGCTT-TTTCGAAATAAAATAGTACTAATTTATTAAAATTTCAAAAATTAATA
258 CAATTCATACTAAGCTTATTT-G-AATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATA
* * **
98471 AGTAAAAGATTTAAAAAATAAATCTGTTTATCGAGTAAGTTC
320 AGTAAAAGATTT-AAAAATAAATCTGTTTACCAAACAAGTTC
* * * * * * *
98513 AAATAGTTATAACTATTTGAATAATTATTTATTTCAAATCGTTATGA-TCTTTTGTTTTGTCATA
1 AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACT-TTTTATTTTGTCATA
*
98577 AAATAATT
65 AAACAATT
98585 TTACTTTATT
Statistics
Matches: 1199, Mismatches: 254, Indels: 106
0.77 0.16 0.07
Matches are distributed among these distances:
351 4 0.00
352 129 0.11
353 34 0.03
354 86 0.07
355 14 0.01
356 11 0.01
357 52 0.04
358 199 0.17
359 49 0.04
360 31 0.03
361 343 0.29
362 208 0.17
363 39 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (360 bp):
AAATAATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTCATAA
AACAATTATTTTTGTTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTCCAA
AAATTAATAATAAAGAGATTTAAAAAATAAATATGTTTGCTAAACAAATTCAAATAGTTATGACT
ATTTGAATAATTATCTATTTCAAATAATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCAA
TTCATACTAAGCTTATTTGAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAA
AGATTTAAAAATAAATCTGTTTACCAAACAAGTTC
Found at i:98014 original size:16 final size:17
Alignment explanation
Indices: 97993--98024 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97983 TAGTCATTAA
97993 TATTTC-AATAATTATC
1 TATTTCAAATAATTATC
98009 TATTTCAAATAATTAT
1 TATTTCAAATAATTAT
98025 GACCTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTCAAATAATTATC
Found at i:99078 original size:180 final size:176
Alignment explanation
Indices: 98574--99510 Score: 711
Period size: 180 Copynumber: 5.2 Consensus size: 176
98564 TTGTTTTGTC
** * ** *
98574 ATAAAATAATTTTACTTTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACTAAATTTATTT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAA-TTATTT
* * * **
98639 ACTAAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCAAATCATAATG--ATCT
65 ACTAAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTTTGACAT-T
* * ** * *
98702 TTATTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTTAGA
129 TTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGGA
* * * *
98750 TTAAAATGATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAA-TATGAT
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATTAT-TT
* * * * * *
98814 AGTCAAACTAGTTCAAATAGTTAAGACTA-TCAGAATAATTATCTATTTCAAATCATTTT-ATCC
65 ACT-AAACAAGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCATTTTGA-CA
* * *
98877 TTTTGTTTAGTCATAAAACAATTATTTCAGTTCATATAAGCTTATTTGGA
127 TTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGGA
* *
98927 ATAAAACAATACTAATTTATTAACA-TTCAAAAAATTAAAGTAAGAGATTTAAAAAGATAAATCT
1 ATAAAATAATACTAATTTATTAATATTTC-AAAAATT-AA-TAAGAGATTTAAAAA-ATAAAT-T
* * * * * * * * *
98991 ATTTACTGAACAATTTCAAATAGATATGACTATTTAAACATTTTTTTGTTTAAAATTATTTTGAC
61 ATTTACTAAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTTTGAC
* * *
99056 ATTTTGTTTTGTCATAAAACAATTGTTTCAGTTAATAAAAACTTATTTGAA
126 ATTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGGA
* * *
99107 ATAAAATAATACTACTTTATTAATATTTCAAAAATTATTAAGTAAAAGATTTAAAAACTAAAGCT
1 ATAAAATAATACTAATTTATTAATATTTC-AAAA--ATTAA-TAAGAGATTTAAAAAATAAA--T
* * * * * * *
99172 GT-TTTTC-AAAGC-AGTTCTAATAGTTATGACTATTTGAACAAATAT-TAATCTCACATCATTA
60 -TATTTACTAAA-CAAGTTCAAATAGTTATGACTATTTAAACAATTATCT-ATTTCAAATCATTT
* *** * * *
99233 TG--ATCTTTGTTTTGTCATAAAATAATTGTTTTTTTTATCATATAA-CTTAATT-CA
122 TGACAT-TTTGTTTTGTCATAAAACAATTG-TTTCAGT-TCATAAAAGCTTATTTGGA
* * *
99287 GATAAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
1 -AT-AAAATAATACTAATTTATTAATA-TTTCAAAA--ATTAA-TAAGAGATTTAAAAAATAAAT
* ** * * * * * * *
99352 GTATTTGCCGATCAA-TTCAAATAGTGAAGATTA-TTAGAATAATTATCTATTTCAAATCGTTCT
60 -TATTTACTAAACAAGTTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCATTTT
* ** * * * *
99415 GACCTTTTGTTTAATCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCGAA
123 GACATTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGGA
* * *
99469 AGAAAATAATACTAATTTATTAACT-TTTGAAAGATTAATAAG
1 ATAAAATAATACTAATTTATTAA-TATTTCAAAAATTAATAAG
99511 CAGGATATTT
Statistics
Matches: 606, Mismatches: 118, Indels: 74
0.76 0.15 0.09
Matches are distributed among these distances:
174 3 0.00
175 4 0.01
176 101 0.17
177 72 0.12
178 3 0.00
179 24 0.04
180 167 0.28
181 117 0.19
182 106 0.17
183 9 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (176 bp):
ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATTATTTA
CTAAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTTTGACATTTT
GTTTTGTCATAAAACAATTGTTTCAGTTCATAAAAGCTTATTTGGA
Found at i:99826 original size:19 final size:19
Alignment explanation
Indices: 99802--99841 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
99792 TTAATTATTA
* *
99802 TTTAATTTAATATAATAAT
1 TTTAATTAAATAAAATAAT
99821 TTTAATTAAATAAAATAAT
1 TTTAATTAAATAAAATAAT
99840 TT
1 TT
99842 AATAAATTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAATTAAATAAAATAAT
Found at i:99933 original size:13 final size:14
Alignment explanation
Indices: 99915--99948 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
99905 AATTTAATAT
99915 ATATTAAATATT-A
1 ATATTAAATATTCA
*
99928 ATATTAATTATTCA
1 ATATTAAATATTCA
99942 ATATTAA
1 ATATTAA
99949 TAAAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTAAATATTCA
Found at i:100035 original size:13 final size:13
Alignment explanation
Indices: 99998--100041 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
99988 GATTAATAAT
*
99998 ATAATTTCATATTCC
1 ATAATTT-ATATT-A
*
100013 ATAATATATATTA
1 ATAATTTATATTA
100026 ATAATTTATATTA
1 ATAATTTATATTA
100039 ATA
1 ATA
100042 TACATATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTTATATTA
Found at i:100536 original size:17 final size:17
Alignment explanation
Indices: 100514--100557 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
100504 TATACATTAT
100514 ATTAATAATAACAAATA
1 ATTAATAATAACAAATA
* * *
100531 ATTAATTATAATATATA
1 ATTAATAATAACAAATA
100548 ATT-ATAATAA
1 ATTAATAATAA
100558 TAATTATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTAATAATAACAAATA
Found at i:100553 original size:6 final size:6
Alignment explanation
Indices: 100533--100610 Score: 63
Period size: 6 Copynumber: 13.0 Consensus size: 6
100523 AACAAATAAT
* * *
100533 TAATTA TAATATA TAATTA TAATAA TAATTA TAA-TA TTAGTTA T-ATTT
1 TAATTA TAAT-TA TAATTA TAATTA TAATTA TAATTA -TAATTA TAATTA
* *
100581 TAA-TA AAATTA TAAGTTA TAATAA TAATTA
1 TAATTA TAATTA TAA-TTA TAATTA TAATTA
100611 ATATAGTTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 8 0.14
6 34 0.61
7 14 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (6 bp):
TAATTA
Found at i:100584 original size:29 final size:25
Alignment explanation
Indices: 100527--100610 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
100517 AATAATAACA
100527 AATAATTAATTATAATATATAATTAT
1 AATAA-TAATTATAATATATAATTAT
*
100553 AATAATAATTATAATAT-TAGTTAT
1 AATAATAATTATAATATATAATTAT
** *
100577 -ATTTTAA-TAAAAT-TATAAGTTAT
1 AATAATAATTATAATATATAA-TTAT
100600 AATAATAATTA
1 AATAATAATTA
100611 ATATAGTTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 1 0.02
22 7 0.15
23 9 0.19
24 11 0.23
25 14 0.30
26 5 0.11
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
AATAATAATTATAATATATAATTAT
Found at i:100820 original size:18 final size:19
Alignment explanation
Indices: 100794--100831 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
100784 AATATAATAT
*
100794 AATATTATTTATT-TATTA
1 AATAATATTTATTATATTA
100812 AATAATATTTATTATATTA
1 AATAATATTTATTATATTA
100831 A
1 A
100832 TAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATAATATTTATTATATTA
Found at i:100835 original size:22 final size:21
Alignment explanation
Indices: 100787--100836 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
100777 TTATAATAAT
100787 ATAATATAATATTATTTATTTA
1 ATAA-ATAATATTATTTATTTA
*
100809 TTAAATAATATT-TATTATATTA
1 ATAAATAATATTAT-TTAT-TTA
100831 ATAAAT
1 ATAAAT
100837 TAGTTAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.04
21 12 0.50
22 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATAAATAATATTATTTATTTA
Found at i:100953 original size:32 final size:32
Alignment explanation
Indices: 100912--101014 Score: 79
Period size: 32 Copynumber: 3.2 Consensus size: 32
100902 TCAAAGCTAA
*
100912 TTAAAATTATTAGATATTAATTAATTAAATAT
1 TTAATATTATTAGATATTAATTAATTAAATAT
* * *
100944 TTAATATTATGA-ATTATTCA-TAATTAAATTAA
1 TTAATATTATTAGA-TATTAATTAATTAAA-TAT
* *
100976 TTAATTAAGTATTAGATATTAGTTTAA-T-AATAT
1 TTAA-T-ATTATTAGATATTA-ATTAATTAAATAT
101009 TTAATA
1 TTAATA
101015 ATTTAGTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
31 10 0.18
32 22 0.40
33 7 0.13
34 11 0.20
35 2 0.04
36 3 0.05
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.48
Consensus pattern (32 bp):
TTAATATTATTAGATATTAATTAATTAAATAT
Found at i:106551 original size:21 final size:21
Alignment explanation
Indices: 106522--106576 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
106512 TTTTTCCAGA
106522 AAAGAGATCGATCCCCTCATAT
1 AAAG-GATCGATCCCCTCATAT
*
106544 AAAGGATCGATCCCCTCATTT
1 AAAGGATCGATCCCCTCATAT
*
106565 AAGGGATCGATC
1 AAAGGATCGATC
106577 ACTTTTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (21 bp):
AAAGGATCGATCCCCTCATAT
Found at i:106584 original size:98 final size:97
Alignment explanation
Indices: 106451--106652 Score: 253
Period size: 98 Copynumber: 2.1 Consensus size: 97
106441 AAATGATCAA
* * * ** * *
106451 ATCGATCCCCTTATTCAAGGGAATAATCATTTTTTCATACAAAATGTTTTCATTGTGCATTTTTT
1 ATCGATCCCCTCATTCAAGGGAATAATCACTTTTTCATACAAAAAGTTTTCATCATGC-CTTCTT
* *
106516 TCCAGAAAAGAGATCGATCCCCTCATATAAAGG
65 TCCAGAAAAGAGATCGATCCCCTCACATAAACG
* *
106549 ATCGATCCCCTCATTTAAGGG-ATCGATCACTTTTTCATACAAAAAGTTTTCATCATGCCTTCTT
1 ATCGATCCCCTCATTCAAGGGAAT-AATCACTTTTTCATACAAAAAGTTTTCATCATGCCTTCTT
* * *
106613 TCCAGAAAAGGGATCGATCTCCTCACATAGACG
65 TCCAGAAAAGAGATCGATCCCCTCACATAAACG
106646 ATCGATC
1 ATCGATC
106653 ACCTAAGGCA
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
97 41 0.46
98 48 0.54
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (97 bp):
ATCGATCCCCTCATTCAAGGGAATAATCACTTTTTCATACAAAAAGTTTTCATCATGCCTTCTTT
CCAGAAAAGAGATCGATCCCCTCACATAAACG
Found at i:106666 original size:97 final size:98
Alignment explanation
Indices: 106476--106669 Score: 237
Period size: 97 Copynumber: 2.0 Consensus size: 98
106466 CAAGGGAATA
* * ** * *
106476 ATCATTTTTTCATACAAAATGTTTTCATTGTGCATTTTTTTCCAGAAAAGAGATCGATCCCCTCA
1 ATCACTTTTTCATACAAAAAGTTTTCATCATGCACTTCTTTCCAGAAAAGAGATCGATCCCCTCA
* * * * ***
106541 TATAAAGGATCGATCCCCTCATTTAAGGGATCG
66 CATAAACGATCGATCACCTAAGGCAAGGGATCG
* *
106574 ATCACTTTTTCATACAAAAAGTTTTCATCATGC-CTTCTTTCCAGAAAAGGGATCGATCTCCTCA
1 ATCACTTTTTCATACAAAAAGTTTTCATCATGCACTTCTTTCCAGAAAAGAGATCGATCCCCTCA
*
106638 CATAGACGATCGATCACCTAAGGCAAGGGATC
66 CATAAACGATCGATCACCTAAGGCAAGGGATC
106670 AATCCCCTCT
Statistics
Matches: 80, Mismatches: 16, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
97 51 0.64
98 29 0.36
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (98 bp):
ATCACTTTTTCATACAAAAAGTTTTCATCATGCACTTCTTTCCAGAAAAGAGATCGATCCCCTCA
CATAAACGATCGATCACCTAAGGCAAGGGATCG
Found at i:109306 original size:35 final size:36
Alignment explanation
Indices: 109242--109313 Score: 87
Period size: 35 Copynumber: 2.0 Consensus size: 36
109232 TGTAATTTAT
* *
109242 AATTATAGTATTATTAATACAATTTACAATTA-ATA
1 AATTATAATATTATTAATACAATTAACAATTACATA
109277 AATTATAAT-TTATTAATTA-ATATTAACAATTACATA
1 AATTATAATATTATTAA-TACA-ATTAACAATTACATA
109313 A
1 A
109314 CAATTAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
34 8 0.25
35 20 0.62
36 4 0.12
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (36 bp):
AATTATAATATTATTAATACAATTAACAATTACATA
Found at i:110197 original size:17 final size:16
Alignment explanation
Indices: 110177--110231 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
110167 TTCAAATAGT
110177 ATAATTTATCAATTATA
1 ATAATTTAT-AATTATA
* * *
110194 ATAATTATTTATTTATT
1 ATAATT-TATAATTATA
110211 ATAATATTATAATTATA
1 ATAAT-TTATAATTATA
110228 ATAA
1 ATAA
110232 ATATATTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 27 0.90
18 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATTTATAATTATA
Found at i:110198 original size:34 final size:34
Alignment explanation
Indices: 110160--110231 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
110150 TTTGAAATAT
*
110160 ATAATTGTTCAAATAGTATAAT-TTATCAATTATA
1 ATAATTATTCAAATAGTATAATATTAT-AATTATA
* ** *
110194 ATAATTATTTATTTATTATAATATTATAATTATA
1 ATAATTATTCAAATAGTATAATATTATAATTATA
110228 ATAA
1 ATAA
110232 ATATATTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (34 bp):
ATAATTATTCAAATAGTATAATATTATAATTATA
Found at i:110205 original size:20 final size:19
Alignment explanation
Indices: 110180--110220 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
110170 AAATAGTATA
110180 ATTTATCAATTATAATAATT
1 ATTTATCAATTATAAT-ATT
**
110200 ATTTATTTATTATAATATT
1 ATTTATCAATTATAATATT
110219 AT
1 AT
110221 AATTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTATCAATTATAATATT
Found at i:110227 original size:14 final size:13
Alignment explanation
Indices: 110208--110266 Score: 57
Period size: 14 Copynumber: 4.4 Consensus size: 13
110198 TTATTTATTT
110208 ATTATAATATTATA
1 ATTATAATA-TATA
*
110222 ATTATAATAAATA
1 ATTATAATATATA
* *
110235 TATTAAAATATTTTA
1 -ATTATAATA-TATA
110250 A-TATAATATATA
1 ATTATAATATATA
110262 ATTAT
1 ATTAT
110267 TTATTTATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
12 4 0.11
13 12 0.33
14 18 0.50
15 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTATAATATATA
Found at i:110238 original size:28 final size:27
Alignment explanation
Indices: 110207--110266 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 27
110197 ATTATTTATT
110207 TATTATAATATTATAATTATAATAAATA
1 TATTATAATATTATAA-TATAATAAATA
* * *
110235 TATTAAAATATTTTAATATAATATATA
1 TATTATAATATTATAATATAATAAATA
110262 -ATTAT
1 TATTAT
110267 TTATTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.14
27 10 0.36
28 14 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
TATTATAATATTATAATATAATAAATA
Found at i:110588 original size:7 final size:7
Alignment explanation
Indices: 110570--110599 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
110560 TATTAATTAC
110570 AATTAT-
1 AATTATA
110576 AATTATA
1 AATTATA
110583 AATTATA
1 AATTATA
110590 AATTATA
1 AATTATA
110597 AAT
1 AAT
110600 AATTTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AATTATA
Found at i:110889 original size:24 final size:22
Alignment explanation
Indices: 110830--110889 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
110820 AGCTATAAAC
*
110830 AAATTAAAAAATTAATAATTTTTT
1 AAATTACAAAA-T-ATAATTTTTT
**
110854 AAATTATTAAATATAATTTATTT
1 AAATTACAAAATATAATTT-TTT
110877 AATATTACAAAAT
1 AA-ATTACAAAAT
110890 TATTATTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 7 0.23
23 6 0.20
24 17 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATTACAAAATATAATTTTTT
Found at i:111265 original size:27 final size:27
Alignment explanation
Indices: 111235--111304 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 27
111225 GAATTAAAAC
111235 AATTATAGTAATAATATATATTAT-TTT
1 AATTATA-TAATAATATATATTATATTT
* *
111262 AATTATA-ATTAAAATATATTATATTT
1 AATTATATAATAATATATATTATATTT
*
111288 AAATATA-ATATAATATA
1 AATTATATA-ATAATATA
111305 CATGTCTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 13 0.36
26 10 0.28
27 13 0.36
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (27 bp):
AATTATATAATAATATATATTATATTT
Found at i:111282 original size:16 final size:16
Alignment explanation
Indices: 111263--111301 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
111253 TATTATTTTA
111263 ATTATAATTAAAATAT
1 ATTATAATTAAAATAT
*
111279 ATTAT-ATTTAAATAT
1 ATTATAATTAAAATAT
*
111294 AATATAAT
1 ATTATAAT
111302 ATACATGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTATAATTAAAATAT
Found at i:111302 original size:25 final size:25
Alignment explanation
Indices: 111250--111304 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
111240 TAGTAATAAT
*
111250 ATATATTATTTTAATTATAATTAAA
1 ATATATTATTTTAAATATAATTAAA
*
111275 ATATATTATATTTAAATATAA-TATA
1 ATATATTAT-TTTAAATATAATTAAA
111300 ATATA
1 ATATA
111305 CATGTCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATATTATTTTAAATATAATTAAA
Found at i:111697 original size:15 final size:15
Alignment explanation
Indices: 111679--111826 Score: 61
Period size: 15 Copynumber: 10.2 Consensus size: 15
111669 AATAATTTAT
111679 ATAATTTTAATATTA
1 ATAATTTTAATATTA
**
111694 ATAAAATTAATATTTA
1 ATAATTTTAATA-TTA
111710 ATTAATTTTAATA-TA
1 A-TAATTTTAATATTA
*
111725 ATTATTATT-ATATT-
1 ATAATT-TTAATATTA
*
111739 -TCATCTTGTAATATT-
1 ATAAT-TT-TAATATTA
111754 ATAA--TTAATATT-
1 ATAATTTTAATATTA
111766 ATAATTATATAATATT-
1 ATAATT-T-TAATATTA
* *
111782 ATAA--CTATTATTA
1 ATAATTTTAATATTA
* *
111795 ATAGTTATAAT-TTA
1 ATAATTTTAATATTA
111809 ATAA-TTTATATATTA
1 ATAATTTTA-ATATTA
111824 ATA
1 ATA
111827 GTTAAGGTCA
Statistics
Matches: 102, Mismatches: 14, Indels: 34
0.68 0.09 0.23
Matches are distributed among these distances:
12 17 0.17
13 11 0.11
14 17 0.17
15 31 0.30
16 17 0.17
17 9 0.09
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (15 bp):
ATAATTTTAATATTA
Found at i:111764 original size:12 final size:12
Alignment explanation
Indices: 111747--111826 Score: 58
Period size: 12 Copynumber: 6.4 Consensus size: 12
111737 TTTCATCTTG
111747 TAATATTATAAT
1 TAATATTATAAT
111759 TAATATTATAAT
1 TAATATTATAAT
*
111771 T-ATATAAT-AT
1 TAATATTATAAT
* *
111781 T-ATAACTATTAT
1 TAAT-ATTATAAT
111793 TAATAGTTATAATT
1 TAATA-TTATAA-T
111807 TAATAATTTATATAT
1 TAAT-A-TTATA-AT
111822 TAATA
1 TAATA
111827 GTTAAGGTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
10 5 0.09
11 9 0.16
12 17 0.31
13 6 0.11
14 6 0.11
15 11 0.20
16 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (12 bp):
TAATATTATAAT
Found at i:111781 original size:28 final size:29
Alignment explanation
Indices: 111747--111803 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 29
111737 TTTCATCTTG
*
111747 TAATATTATAATTAATATT-ATAATTATA
1 TAATATTATAACTAATATTAATAATTATA
* *
111775 TAATATTATAACTATTATTAATAGTTATA
1 TAATATTATAACTAATATTAATAATTATA
111804 ATTTAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (29 bp):
TAATATTATAACTAATATTAATAATTATA
Found at i:111805 original size:9 final size:8
Alignment explanation
Indices: 111759--111823 Score: 57
Period size: 8 Copynumber: 8.0 Consensus size: 8
111749 ATATTATAAT
111759 TAATATTA
1 TAATATTA
111767 TAAT-TATA
1 TAATAT-TA
111775 TAATATTA
1 TAATATTA
111783 TAACTATTA
1 TAA-TATTA
111792 TTAATAGTTA
1 -TAATA-TTA
111802 TAAT-TTAA
1 TAATATT-A
111810 TAAT-TTA
1 TAATATTA
111817 T-ATATTA
1 TAATATTA
111824 ATAGTTAAGG
Statistics
Matches: 50, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
6 2 0.04
7 8 0.16
8 22 0.44
9 12 0.24
10 6 0.12
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (8 bp):
TAATATTA
Found at i:112009 original size:24 final size:23
Alignment explanation
Indices: 111986--112029 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
111976 ATTGTTTACT
111986 TTAT-ATATTAATTATTAATATAC
1 TTATAATATTAATT-TTAATATAC
*
112009 TTATAATATTAGTTTTAATAT
1 TTATAATATTAATTTTAATAT
112030 TAATAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
TTATAATATTAATTTTAATATAC
Found at i:112026 original size:23 final size:23
Alignment explanation
Indices: 111986--112052 Score: 66
Period size: 24 Copynumber: 2.9 Consensus size: 23
111976 ATTGTTTACT
111986 TTATATATTAATTATTAATATAC
1 TTATATATTAATTATTAATATAC
* *
112009 TTATAATATTAGTT-TTAATATTAA
1 TTAT-ATATTAATTATTAATA-TAC
*
112033 TAAT-TATTTAATTATTAATA
1 TTATATA-TTAATTATTAATA
112053 AATTAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
22 2 0.06
23 15 0.42
24 19 0.53
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (23 bp):
TTATATATTAATTATTAATATAC
Found at i:112033 original size:18 final size:17
Alignment explanation
Indices: 112012--112127 Score: 83
Period size: 18 Copynumber: 6.3 Consensus size: 17
112002 AATATACTTA
112012 TAATATTAGTTTTAA-TAT
1 TAATATTA--TTTAATTAT
112030 TAATAATTATTTAATTAT
1 TAAT-ATTATTTAATTAT
* * *
112048 TAATAAATTAATAATAATCAA
1 TAAT--ATT-AT-TTAATTAT
112069 TAATAAATTATTTAATTAT
1 TAAT--ATTATTTAATTAT
112088 TAATAATTATTTAATTAT
1 TAAT-ATTATTTAATTAT
*
112106 TAATA-AATTTAATTAAT
1 TAATATTATTTAATT-AT
112123 TAATA
1 TAATA
112128 AATAAATCAT
Statistics
Matches: 85, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
16 8 0.09
17 13 0.15
18 29 0.34
19 17 0.20
20 4 0.05
21 14 0.16
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
TAATATTATTTAATTAT
Found at i:112111 original size:40 final size:39
Alignment explanation
Indices: 112057--112130 Score: 68
Period size: 37 Copynumber: 2.0 Consensus size: 39
112047 TTAATAAATT
112057 AATAATAATCAATAATAAATTATTTAATTATTAAT-AATT
1 AATAATAATCAATAAT-AATTATTTAATTATTAATAAATT
* * *
112096 -AT-TTAATTATTAATAA--ATTTAATTAATTAATAAAT
1 AATAATAATCAATAATAATTATTTAATT-ATTAATAAAT
112131 AAATCATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
34 8 0.27
35 6 0.20
36 5 0.17
37 9 0.30
38 2 0.07
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (39 bp):
AATAATAATCAATAATAATTATTTAATTATTAATAAATT
Found at i:112123 original size:4 final size:4
Alignment explanation
Indices: 112028--112126 Score: 70
Period size: 4 Copynumber: 26.5 Consensus size: 4
112018 TAGTTTTAAT
* * *
112028 ATTA A-TA ATTA TTTA ATT- ATTA ATAA ATTA A-TA A-TA ATCA A-TA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA
* * * *
112071 ATAA ATTA TTTA ATT- ATTA A-TA ATTA TTTA ATT- ATTA ATAA ATTTA
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A-TTA
112117 ATTA ATTA AT
1 ATTA ATTA AT
112127 AAATAAATCA
Statistics
Matches: 73, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
3 23 0.32
4 47 0.64
5 3 0.04
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:112133 original size:58 final size:56
Alignment explanation
Indices: 112022--112134 Score: 174
Period size: 58 Copynumber: 2.0 Consensus size: 56
112012 TAATATTAGT
112022 TTTAATATTAATAATTATTTAATTATTAATAAATTAATAATAATCAATAATAAATTA
1 TTTAATATTAATAATTATTTAATTATTAATAAATTAAT-ATAATCAATAATAAATTA
*
112079 TTTAATTATTAATAATTATTTAATTATTAATAAATTTAAT-TAATTAATAAATAAAT
1 TTTAA-TATTAATAATTATTTAATTATTAATAAA-TTAATATAATCAAT-AATAAAT
112135 CATTATGGCT
Statistics
Matches: 52, Mismatches: 1, Indels: 5
0.90 0.02 0.09
Matches are distributed among these distances:
57 12 0.23
58 35 0.67
59 5 0.10
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (56 bp):
TTTAATATTAATAATTATTTAATTATTAATAAATTAATATAATCAATAATAAATTA
Found at i:112903 original size:18 final size:20
Alignment explanation
Indices: 112868--112905 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
112858 ATTAGAATCA
*
112868 ATATATTGTTATTGAAAAAT
1 ATATATTGTTATTAAAAAAT
112888 ATATATT-TTA-TAAAAAAT
1 ATATATTGTTATTAAAAAAT
112906 TATCTAACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 3 0.18
20 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
ATATATTGTTATTAAAAAAT
Found at i:113505 original size:13 final size:12
Alignment explanation
Indices: 113459--113510 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
113449 ATTGTTTGAC
113459 AATAATAGTTAAT
1 AATAATA-TTAAT
113472 AA-AATATTAAT
1 AATAATATTAAT
113483 AATAACTATTAACT
1 AATAA-TATTAA-T
*
113497 ATTAATATT-AT
1 AATAATATTAAT
113508 AAT
1 AAT
113511 TAATTATAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
11 10 0.29
12 7 0.21
13 12 0.35
14 5 0.15
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (12 bp):
AATAATATTAAT
Found at i:113549 original size:25 final size:22
Alignment explanation
Indices: 113515--113571 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 22
113505 TATAATTAAT
113515 TATAAGTTATAATTAAAATTATTTGA
1 TATAA-TTAT-ATTAAAATT-TTT-A
*
113541 TATAATTATATTTAAATTTTTA
1 TATAATTATATTAAAATTTTTA
*
113563 TTTAATTAT
1 TATAATTAT
113572 TAATAGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 9 0.31
23 3 0.10
24 8 0.28
25 4 0.14
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
TATAATTATATTAAAATTTTTA
Found at i:113607 original size:26 final size:26
Alignment explanation
Indices: 113510--113607 Score: 76
Period size: 26 Copynumber: 3.7 Consensus size: 26
113500 AATATTATAA
113510 TTAATTATAAGTTATAATTAAAATTAT
1 TTAATTATAA-TTATAATTAAAATTAT
* * *
113537 TTGA-TATAATTATATTTAAATTTTTAT
1 TTAATTATAATTATAATTAAA--ATTAT
*
113564 TTAATTATTAA-TAGTAATT-AAGTTAT
1 TTAATTA-TAATTA-TAATTAAAATTAT
*
113590 TTTATTATAAGTTATAAT
1 TTAATTATAA-TTATAAT
113608 ATTAAATATT
Statistics
Matches: 57, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
25 13 0.23
26 19 0.33
27 12 0.21
28 6 0.11
29 7 0.12
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (26 bp):
TTAATTATAATTATAATTAAAATTAT
Found at i:114879 original size:16 final size:17
Alignment explanation
Indices: 114858--114890 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
114848 TAGTGGTTAG
114858 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
114874 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
114891 TGTACTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:115019 original size:177 final size:177
Alignment explanation
Indices: 114653--115053 Score: 416
Period size: 177 Copynumber: 2.2 Consensus size: 177
114643 GTATCGTGAG
* * * * *
114653 AAAACAAAAAGTCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAATTATTTAAACTTA
1 AAAACAAAAGGTCATAATAATTAGAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTTA
* * * * * * * * *
114718 TTTGGTAAATAGATTTATTTTTTAAATCTTTTTCTTATTAGTTGTCTGAATATTAATAAATTTGT
66 TTCGATAAACAAATTCATTTTTTAAA---TTTTCTTATTAATTGTCTGAATATTAATAAAATAGA
* * * * *
114783 ATAATTTTATTTGAAATAAGCTTGTATGAATAGAAAATTTTGTTTTCGGAC
128 ATAATATTATTTCAAATAAGCTAGTAAGAAGAGAAAATTTTGTTTTC-GAC
* * ** ** *
114834 AAAACAAAAGGTTATAGTGGTTAGAAATAGATAATTATTCAAATAGTCATAATTATTTGTACTTG
1 AAAACAAAAGGTCATAATAATTAGAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTTA
*
114899 TTCGATAAACAAATTCATTTTTTAAA-TTTCTTATTAATT-TTTAGAATATTAATAAAATAGAAT
66 TTCGATAAACAAATTCATTTTTTAAATTTTCTTATTAATTGTCT-GAATATTAATAAAATAGAAT
* *
114962 TATATTATTTCAAATAAGCTAGTACAGACAGA-AACAATTATT-TTTT-GAT
130 AATATTATTTCAAATAAGCTAGTA-AGA-AGAGAA-AATT-TTGTTTTCGAC
*
115011 AAAACAAAAGGTCATAATAATTTGAAATAGATAATTATTCAAA
1 AAAACAAAAGGTCATAATAATTAGAAATAGATAATTATTCAAA
115054 CAATCGTAAC
Statistics
Matches: 181, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
176 2 0.01
177 89 0.49
178 4 0.02
179 10 0.06
180 2 0.01
181 74 0.41
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (177 bp):
AAAACAAAAGGTCATAATAATTAGAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTTA
TTCGATAAACAAATTCATTTTTTAAATTTTCTTATTAATTGTCTGAATATTAATAAAATAGAATA
ATATTATTTCAAATAAGCTAGTAAGAAGAGAAAATTTTGTTTTCGAC
Found at i:115769 original size:30 final size:31
Alignment explanation
Indices: 115725--115784 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
115715 TGATAACAAT
115725 TAAATTTAATAAATTACTTA-TTAAACTTTAA
1 TAAATTTAATAAATTACTTATTTAAA-TTTAA
* *
115756 TAAA-TTATTAAATTATTTATTTAAATTTA
1 TAAATTTAATAAATTACTTATTTAAATTTA
115785 TGCAAGCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (31 bp):
TAAATTTAATAAATTACTTATTTAAATTTAA
Found at i:115867 original size:22 final size:21
Alignment explanation
Indices: 115841--115881 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
115831 ATATTGAATT
*
115841 ATTTTGACTAATTATTATAACA
1 ATTTTGAATAA-TATTATAACA
*
115863 ATTTTTAATAATATTATAA
1 ATTTTGAATAATATTATAA
115882 ATGATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTTGAATAATATTATAACA
Found at i:116091 original size:22 final size:22
Alignment explanation
Indices: 116066--116110 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
116056 TATTTAACTA
* *
116066 ATATATATTAATTATTAGTAAT
1 ATATATAATAATTATTAATAAT
116088 ATATATAATAATTATTAATAAT
1 ATATATAATAATTATTAATAAT
116110 A
1 A
116111 ATTGAGATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATAATAATTATTAATAAT
Found at i:117139 original size:184 final size:180
Alignment explanation
Indices: 116670--117172 Score: 636
Period size: 181 Copynumber: 2.8 Consensus size: 180
116660 TTAAATCTCT
* * ** *
116670 TATTAATTTTTAAATATTAATAAATCA-AAATTATTTTATTTTGAATAATTCTGTGTGAATAGAA
1 TATTAATTTTTAAATATTAATAAATTAGTAA-TATTTTATTTTGAATAAACCTGTATGAATAGAA
* * * *
116734 ACAATTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCTAATGGACA
65 ACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCA
* * *
116799 TGACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCCTACC
130 TGACTATTTAAACTTGTTCAGCAAACAAATTCATTTTTTAAATCTCCTACC
** * * *
116850 TATTAATTTGCAAAATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAA
1 TATTAATTT-TTAAATATTAATAAATTAGTAATATTTTATTTTGAATAAACCTGTATGAATAGAA
*
116915 ACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCA
65 ACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCA
*
116980 TCG-CTATTTAAACTTGTTCAGCAAACAAATTCATTTTTTTAAAATCTCTTA-C
130 T-GACTATTTAAACTTGTTCAGCAAACAAATTCA-TTTTTT-AAATCTCCTACC
* * * * *
117032 TCATTAATTTTTAGAATATTAACAAAATTAGTAATATTTTATTTCGAATAAGCCTATATGAATTG
1 T-ATTAATTTTTA-AATATTAA-TAAATTAGTAATATTTTATTTTGAATAAACCTGTATGAATAG
* * *
117097 ATAA-AATTGTTTTATGACAAAACAATAGGTCATAATGATTTGAAATAGATAATTATTCAAATAG
63 A-AACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAG
* *
117161 TTATGAATATTT
127 TCATGACTATTT
117173 GAATTATAAG
Statistics
Matches: 278, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
180 9 0.03
181 131 0.47
182 11 0.04
183 26 0.09
184 99 0.36
185 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (180 bp):
TATTAATTTTTAAATATTAATAAATTAGTAATATTTTATTTTGAATAAACCTGTATGAATAGAAA
CAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCAT
GACTATTTAAACTTGTTCAGCAAACAAATTCATTTTTTAAATCTCCTACC
Found at i:117368 original size:20 final size:20
Alignment explanation
Indices: 117333--117395 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
117323 AATATTGATT
*
117333 TTAATTTAAATATTTTAATTA
1 TTAA-TTAATTATTTTAATTA
*
117354 TTGAATT-CTTATTTTAATTAA
1 TT-AATTAATTATTTTAATT-A
*
117375 TTAATTAATAATTTTAATTA
1 TTAATTAATTATTTTAATTA
117395 T
1 T
117396 GGACTAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 16 0.46
21 17 0.49
22 2 0.06
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
TTAATTAATTATTTTAATTA
Found at i:117792 original size:19 final size:20
Alignment explanation
Indices: 117764--117807 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
117754 TAATATAAAT
117764 TAAT-TAATAATTAA-AACTA
1 TAATATAATAA-TAATAACTA
117783 -AATATAATAATAATAACTA
1 TAATATAATAATAATAACTA
117802 TAATAT
1 TAATAT
117808 CTGAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.27
19 11 0.50
20 5 0.23
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
TAATATAATAATAATAACTA
Found at i:118353 original size:8 final size:8
Alignment explanation
Indices: 118342--118366 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
118332 TATTTGTTTA
118342 TTAATTAT
1 TTAATTAT
118350 TTAATTAT
1 TTAATTAT
118358 TTAATTAT
1 TTAATTAT
118366 T
1 T
118367 ATTGATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTAATTAT
Found at i:118559 original size:27 final size:25
Alignment explanation
Indices: 118516--118566 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
118506 AATTTATTAT
118516 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTACTAATA
*
118541 ATTAATATTATTATAATATTAGTAAT
1 ATTAATA-T-TTATAATATTACTAAT
118567 TTTGTTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 7 0.30
26 1 0.04
27 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (25 bp):
ATTAATATTTATAATATTACTAATA
Found at i:118900 original size:16 final size:17
Alignment explanation
Indices: 118881--118920 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
118871 GTAATAAATT
118881 ATTTTATTATTT-ATAA
1 ATTTTATTATTTAATAA
118897 ATTTTA--ATTTAATAA
1 ATTTTATTATTTAATAA
*
118912 AATTTATTA
1 ATTTTATTA
118921 ATAATTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 4 0.20
15 9 0.45
16 6 0.30
17 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTATTTAATAA
Found at i:119182 original size:19 final size:18
Alignment explanation
Indices: 119160--119216 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
119150 ATTAGTAACT
119160 TAATTATTAATATTTATTA
1 TAATTATTAATA-TTATTA
*
119179 TAATTA-T-ATATAATTA
1 TAATTATTAATATTATTA
119195 T-ATTACTTAATAATTATTA
1 TAATTA-TTAAT-ATTATTA
119214 TAA
1 TAA
119217 ATTTATATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.13
16 6 0.19
17 4 0.13
18 3 0.10
19 13 0.42
20 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTATTAATATTATTA
Found at i:119297 original size:23 final size:22
Alignment explanation
Indices: 119270--119317 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
119260 AATTTAAATT
*
119270 AATATTTGAACTTTAATATATTA
1 AATATTTAAACTTTAATAT-TTA
*
119293 AATATTTAAAGTTTAATATTTA
1 AATATTTAAACTTTAATATTTA
119315 AAT
1 AAT
119318 TGTTCCTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (22 bp):
AATATTTAAACTTTAATATTTA
Found at i:119781 original size:18 final size:18
Alignment explanation
Indices: 119722--119782 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
119712 TTTAAAAAAC
*
119722 AAATTA-TAATAAAATTAT
1 AAATTATTAAT-AAATAAT
* *
119740 TAATTATTAATAAGTAAT
1 AAATTATTAATAAATAAT
**
119758 TTATTATTAATAAATAAT
1 AAATTATTAATAAATAAT
119776 AAATTAT
1 AAATTAT
119783 ATTTATAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
18 31 0.89
19 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AAATTATTAATAAATAAT
Found at i:119873 original size:38 final size:38
Alignment explanation
Indices: 119825--119908 Score: 150
Period size: 38 Copynumber: 2.2 Consensus size: 38
119815 TTTATGATTA
*
119825 TTATAATAAGTACTATTTAATAATTATTGCTTATAAAT
1 TTATATTAAGTACTATTTAATAATTATTGCTTATAAAT
*
119863 TTATATTAAGTACTATTTAATAATTATTGCTTATAATT
1 TTATATTAAGTACTATTTAATAATTATTGCTTATAAAT
119901 TTATATTA
1 TTATATTA
119909 TTGAAATAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (38 bp):
TTATATTAAGTACTATTTAATAATTATTGCTTATAAAT
Found at i:119910 original size:20 final size:20
Alignment explanation
Indices: 119847--119911 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
119837 CTATTTAATA
*
119847 ATTATTGCTTATAAATTTAT
1 ATTATTGCTTATAATTTTAT
* *
119867 ATTA-AG--TACT-ATTTAAT
1 ATTATTGCTTA-TAATTTTAT
119884 AATTATTGCTTATAATTTTAT
1 -ATTATTGCTTATAATTTTAT
119905 ATTATTG
1 ATTATTG
119912 AAATAATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 12
0.67 0.10 0.24
Matches are distributed among these distances:
17 7 0.21
18 5 0.15
19 2 0.06
20 12 0.35
21 8 0.24
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (20 bp):
ATTATTGCTTATAATTTTAT
Found at i:119932 original size:14 final size:14
Alignment explanation
Indices: 119913--119962 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
119903 ATATTATTGA
119913 AATAATAATTATAT
1 AATAATAATTATAT
119927 AATAATAATTATAT
1 AATAATAATTATAT
* *
119941 --TATTTATTAT-T
1 AATAATAATTATAT
119952 AATAATAATTA
1 AATAATAATTA
119963 ATTTATATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 1 0.03
12 8 0.27
13 7 0.23
14 14 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATAATAATTATAT
Found at i:120351 original size:35 final size:36
Alignment explanation
Indices: 120269--120355 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 36
120259 CATTTTATAA
*
120269 ATTAGTTACTATATCTAAAATTAATTTTAATAATTATT
1 ATTAGTTA--ATATATAAAATTAATTTTAATAATTATT
* *
120307 -TATAG-TAATATATAAAATTTA-TTTATTAATTATT
1 AT-TAGTTAATATATAAAATTAATTTTAATAATTATT
120341 ATTAGTTAATA-ATAA
1 ATTAGTTAATATATAA
120356 TTTATATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
34 19 0.44
35 18 0.42
37 3 0.07
38 3 0.07
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (36 bp):
ATTAGTTAATATATAAAATTAATTTTAATAATTATT
Found at i:120374 original size:18 final size:19
Alignment explanation
Indices: 120352--120404 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
120342 TTAGTTAATA
120352 ATAATTTATATTA-AA-TT
1 ATAATTTATATTATAATTT
120369 ATTAATTTTATATTATAATTT
1 A-TAA-TTTATATTATAATTT
120390 ATAA-TTATATTATAA
1 ATAATTTATATTATAA
120405 ATTAACATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.03
18 14 0.44
19 9 0.28
20 5 0.16
21 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATAATTTATATTATAATTT
Found at i:120446 original size:16 final size:17
Alignment explanation
Indices: 120376--120439 Score: 53
Period size: 18 Copynumber: 3.7 Consensus size: 17
120366 ATTATTAATT
120376 TTATATTATAATTTATA-A
1 TTATATTATAA-TTA-ACA
120394 TTATATTATAAATTAACA
1 TTATATTAT-AATTAACA
* *
120412 TAATATTA-AA-TAAGTA
1 TTATATTATAATTAA-CA
120428 TTATATTATAAT
1 TTATATTATAAT
120440 CAAATTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
15 3 0.08
16 10 0.26
17 3 0.08
18 20 0.53
19 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TTATATTATAATTAACA
Found at i:120597 original size:21 final size:21
Alignment explanation
Indices: 120534--120598 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
120524 ATTATTTATT
120534 ATTTATTAATTATAAT-TTTA
1 ATTTATTAATTATAATATTTA
*
120554 GTTATATTAATTATTAA-ATTTA
1 ATT-TATTAATTA-TAATATTTA
120576 ATTTATT-ATTATAATATATTA
1 ATTTATTAATTATAATAT-TTA
120597 AT
1 AT
120599 AAGTAATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 3 0.08
20 8 0.21
21 18 0.47
22 9 0.24
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
ATTTATTAATTATAATATTTA
Found at i:120645 original size:19 final size:19
Alignment explanation
Indices: 120621--120657 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
120611 AATAAAAATA
*
120621 TATTTTTGGATAATTATAT
1 TATTTTTGAATAATTATAT
*
120640 TATTTTTTAATAATTATA
1 TATTTTTGAATAATTATA
120658 ACAAATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATTTTTGAATAATTATAT
Found at i:120712 original size:12 final size:12
Alignment explanation
Indices: 120686--120801 Score: 58
Period size: 11 Copynumber: 10.2 Consensus size: 12
120676 ATTTTATTTT
* *
120686 ATTAAATAGAAA
1 ATTAAATATATA
120698 ATTAAATATATA
1 ATTAAATATATA
*
120710 ATTTATAATCTAT-
1 A-TTA-AATATATA
120723 A-T-AATATTATA
1 ATTAAATA-TATA
120734 ATTAAATATAT-
1 ATTAAATATATA
120745 -TTCAAA-AT-TA
1 ATT-AAATATATA
*
120755 ATTATATATA-A
1 ATTAAATATATA
120766 ATT-AATA-ATAA
1 ATTAAATATAT-A
120777 ATTAAAT-TATA
1 ATTAAATATATA
*
120788 ATTTAATAT-TA
1 ATTAAATATATA
120799 ATT
1 ATT
120802 TGATAATTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 33
0.67 0.06 0.27
Matches are distributed among these distances:
9 5 0.06
10 12 0.15
11 29 0.36
12 21 0.26
13 8 0.10
14 6 0.07
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (12 bp):
ATTAAATATATA
Found at i:120725 original size:16 final size:17
Alignment explanation
Indices: 120704--120735 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
120694 GAAAATTAAA
120704 TATATAAT-TTATAATC
1 TATATAATATTATAATC
120720 TATATAATATTATAAT
1 TATATAATATTATAAT
120736 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TATATAATATTATAATC
Found at i:120769 original size:15 final size:16
Alignment explanation
Indices: 120749--120789 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
120739 ATATATTTCA
* *
120749 AAATTAATTATATA-T
1 AAATTAATAATAAATT
120764 AAATTAATAATAAATT
1 AAATTAATAATAAATT
120780 AAATT-ATAAT
1 AAATTAATAAT
120790 TTAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTAATAATAAATT
Found at i:120790 original size:22 final size:25
Alignment explanation
Indices: 120761--120813 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
120751 ATTAATTATA
*
120761 TATAAATTAATAATAAATT-A-AAT
1 TATAATTTAATAATAAATTGATAAT
* *
120784 TATAATTTAATATTAATTTGATAAT
1 TATAATTTAATAATAAATTGATAAT
120809 TATAA
1 TATAA
120814 CTAAATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.64
24 1 0.04
25 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
TATAATTTAATAATAAATTGATAAT
Found at i:120960 original size:13 final size:12
Alignment explanation
Indices: 120912--120967 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
120902 ATTATAATTT
120912 TATAATTATATA
1 TATAATTATATA
*
120924 CT-TAATTAAATA
1 -TATAATTATATA
*
120936 TATTATTGATATA
1 TATAATT-ATATA
120949 TAATAATTATATA
1 T-ATAATTATATA
120962 TTATAA
1 -TATAA
120968 ACAAATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 1 0.03
12 13 0.37
13 15 0.43
14 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TATAATTATATA
Found at i:121618 original size:182 final size:182
Alignment explanation
Indices: 121283--121618 Score: 389
Period size: 182 Copynumber: 1.8 Consensus size: 182
121273 GGTAAACACA
* * * *
121283 TTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTATTTATTTTTATC
1 TTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAAAGTAGTATTTATTTTTATC
* * *
121348 TGAATAAGCTTATGTGATAAAAAATAATTGTTTTATGACAAAACAAAGATCATAATGATTTGAGA
66 TGAATAAGCTTATGTGATAAAAAATAATTATTTTATGACAAAACAAAGATCAAAATAATTTGAGA
** * *
121413 TTAATATTTGTTCAAATAGTCATAACTATTAGAAACTGCTTTGAAAAATAGC
131 ACAATAATTGTTCAAACAGTCATAACTATTAGAAACTGCTTTGAAAAATAGC
* * *
121465 TTTAGTTTTTAAATCTCTTGCTTAATAATTTTTTAAATATTAATAAAGTAGTA-TTA-TTTTATT
1 TTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAAAGTAGTATTTATTTTTATC
* * *
121528 TTAGATAAG-TT-T-TTATTAACTGAAATAATTATTTTATGACAAAACAAA-ATGTCAAAATAAT
66 TGA-ATAAGCTTATGTGA-TAA--AAAATAATTATTTTATGACAAAACAAAGA--TCAAAATAAT
* *
121589 TTTA-AACAGATAATTGTTTAAACAGTCATA
125 TTGAGAACA-ATAATTGTTCAAACAGTCATA
121619 TATATTTTAA
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
178 2 0.02
179 4 0.03
180 11 0.09
181 35 0.27
182 76 0.59
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (182 bp):
TTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAAAGTAGTATTTATTTTTATC
TGAATAAGCTTATGTGATAAAAAATAATTATTTTATGACAAAACAAAGATCAAAATAATTTGAGA
ACAATAATTGTTCAAACAGTCATAACTATTAGAAACTGCTTTGAAAAATAGC
Found at i:121728 original size:22 final size:20
Alignment explanation
Indices: 121710--121760 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
121700 ATTAATTCAT
121710 TATAATATATTAACTAATTTA
1 TATAATATATTAACTAA-TTA
* *
121731 TACTAATTTAATAACT-ATTA
1 TA-TAATATATTAACTAATTA
121751 TATAATATAT
1 TATAATATAT
121761 AATTAAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 6 0.24
20 5 0.20
21 3 0.12
22 11 0.44
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (20 bp):
TATAATATATTAACTAATTA
Found at i:121813 original size:53 final size:54
Alignment explanation
Indices: 121740--121843 Score: 135
Period size: 53 Copynumber: 1.9 Consensus size: 54
121730 ATACTAATTT
121740 AATAACTATTATATAATATATAATTA-AATTATTTAT-TTAATTTAAATAATTATTAA
1 AATAACTATTATAT-ATATATAA-TAGAA-TATTTATATTAA-TTAAATAATTATTAA
121796 AATAACTATTA-AT-TATATAATAGTAATATTTATATTAATTAAATAATT
1 AATAACTATTATATATATATAATAG-AATATTTATATTAATTAAATAATT
121844 TAATATTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
52 2 0.04
53 24 0.53
54 6 0.13
55 2 0.04
56 11 0.24
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (54 bp):
AATAACTATTATATATATATAATAGAATATTTATATTAATTAAATAATTATTAA
Found at i:121833 original size:26 final size:25
Alignment explanation
Indices: 121802--121852 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
121792 TTAAAATAAC
*
121802 TATTAATTATATAATAGTAATATTTA
1 TATTAATTAAATAAT-GTAATATTTA
*
121828 TATTAATTAAATAATTTAATATTTA
1 TATTAATTAAATAATGTAATATTTA
121853 AATAGAGACG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTAATTAAATAATGTAATATTTA
Done.