Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168215.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_45, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 205015
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Warning! 1000 characters in sequence are not A, C, G, or T
File 4 of 5
Found at i:122134 original size:33 final size:33
Alignment explanation
Indices: 122088--122151 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
122078 TATTAAATAA
* *
122088 ATTATCTATTTATATAACTACTAA-TATATTAAT
1 ATTATCTACTTATA-AACTAATAATTATATTAAT
* *
122121 ATTATTTACTTATAAATTAATAATTATATTA
1 ATTATCTACTTATAAACTAATAATTATATTA
122152 TTAATAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 7 0.27
33 19 0.73
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (33 bp):
ATTATCTACTTATAAACTAATAATTATATTAAT
Found at i:122139 original size:21 final size:22
Alignment explanation
Indices: 122106--122181 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 22
122096 TTTATATAAC
*
122106 TACTAATATATTAAT-ATTATT
1 TACTAATAAATTAATAATTATT
*
122127 TACTTATAAATTAATAATTATAT
1 TACTAATAAATTAATAATTAT-T
* *
122150 TATTAATAATATGTTAATAATAATT
1 TACTAATAA-A--TTAATAATTATT
122175 TA-TAATA
1 TACTAATA
122182 CTATTAACAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 13 0.29
22 5 0.11
23 8 0.18
24 6 0.13
25 3 0.07
26 10 0.22
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (22 bp):
TACTAATAAATTAATAATTATT
Found at i:122156 original size:12 final size:12
Alignment explanation
Indices: 122132--122242 Score: 69
Period size: 11 Copynumber: 9.8 Consensus size: 12
122122 TTATTTACTT
122132 ATAA-ATTAATA
1 ATAATATTAATA
* *
122143 ATTATATTATTA
1 ATAATATTAATA
122155 ATAATATGTTAATA
1 ATAATA--TTAATA
122169 ATAAT-TT-ATA
1 ATAATATTAATA
* *
122179 ATACTATTAACA
1 ATAATATTAATA
122191 AT-ATATT-ATA
1 ATAATATTAATA
* * *
122201 AAAATAAT-ATT
1 ATAATATTAATA
122212 ATAATA-TAATA
1 ATAATATTAATA
*
122223 ATTATATTAA-A
1 ATAATATTAATA
122234 ATAAT-TTAA
1 ATAATATTAA
122243 AACTTATAAT
Statistics
Matches: 77, Mismatches: 15, Indels: 17
0.71 0.14 0.16
Matches are distributed among these distances:
10 15 0.19
11 34 0.44
12 18 0.23
14 10 0.13
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (12 bp):
ATAATATTAATA
Found at i:122194 original size:33 final size:36
Alignment explanation
Indices: 122150--122217 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 36
122140 ATAATTATAT
* *
122150 TATTAATAATAT-GT-TAATAATAAT-TTATAATAC
1 TATTAACAATATAGTATAAAAATAATATTATAATAC
*
122183 TATTAACAATATATTATAAAAATAATATTATAATA
1 TATTAACAATATAGTATAAAAATAATATTATAATA
122218 TAATAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 11 0.38
34 1 0.03
35 9 0.31
36 8 0.28
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (36 bp):
TATTAACAATATAGTATAAAAATAATATTATAATAC
Found at i:122219 original size:19 final size:19
Alignment explanation
Indices: 122192--122236 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
122182 CTATTAACAA
*
122192 TATATTATAAAAATAATAT
1 TATAATATAAAAATAATAT
* *
122211 TATAATATAATAATTATAT
1 TATAATATAAAAATAATAT
*
122230 TAAAATA
1 TATAATA
122237 ATTTAAAACT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATAATATAAAAATAATAT
Found at i:122239 original size:14 final size:15
Alignment explanation
Indices: 122183--122236 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
122173 TTTATAATAC
122183 TATTAACAATATATTA
1 TATTAA-AATATATTA
122199 TA--AAAATAATATTA
1 TATTAAAAT-ATATTA
* *
122213 TAATATAATA-ATTA
1 TATTAAAATATATTA
122227 TATTAAAATA
1 TATTAAAATA
122237 ATTTAAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.09
14 22 0.69
15 1 0.03
16 6 0.19
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
TATTAAAATATATTA
Found at i:122744 original size:26 final size:28
Alignment explanation
Indices: 122678--122745 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 28
122668 TAAATTATAG
*
122678 AATAAT-ATTATAATAATATTAGACATCT
1 AATAATAATTA-AATAATATTAGACATAT
*
122706 AAT-ATAATT-AATAATATTA-A-TTAT
1 AATAATAATTAAATAATATTAGACATAT
122730 AATAATAATTAAATAA
1 AATAATAATTAAATAA
122746 ATTGTATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
24 5 0.14
25 7 0.20
26 15 0.43
27 2 0.06
28 6 0.17
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (28 bp):
AATAATAATTAAATAATATTAGACATAT
Found at i:122883 original size:15 final size:12
Alignment explanation
Indices: 122854--122884 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
122844 ATTAAATTTG
122854 TATTATTATATT
1 TATTATTATATT
122866 TATTATTATATT
1 TATTATTATATT
*
122878 AATTATT
1 TATTATT
122885 TTAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATTATATT
Found at i:122950 original size:17 final size:17
Alignment explanation
Indices: 122926--122968 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
122916 TTAATTAATT
*
122926 ATAA-TTATTATATATA
1 ATAATTTATTATAAATA
*
122942 ATAATTTATTATAAATT
1 ATAATTTATTATAAATA
122959 ATAAATTTAT
1 AT-AATTTAT
122969 ATTAATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 4 0.17
17 12 0.52
18 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATTTATTATAAATA
Found at i:122981 original size:31 final size:33
Alignment explanation
Indices: 122866--122983 Score: 95
Period size: 33 Copynumber: 3.7 Consensus size: 33
122856 TTATTATATT
* *
122866 TATTAT-TATATTAA-TTATTTTAAATATATTAAA
1 TATTATATATAATAATTTATTATAAAT-TA-TAAA
* * * * *
122899 TAATATGTATAAT-A-TAATTAATTAATTATAAT
1 TATTATATATAATAATTTATT-ATAAATTATAAA
122931 TATTATATATAATAATTTATTATAAATTATAAA
1 TATTATATATAATAATTTATTATAAATTATAAA
*
122964 T-TTATAT-TAATAGTTTATTA
1 TATTATATATAATAATTTATTA
122984 ATTATAACTT
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
31 12 0.17
32 20 0.29
33 24 0.35
34 13 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (33 bp):
TATTATATATAATAATTTATTATAAATTATAAA
Found at i:123022 original size:21 final size:21
Alignment explanation
Indices: 123002--123057 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 21
122992 TTTAAGTTTA
123002 AATATCA-TATATAATATTTT
1 AATATCATTATATAATATTTT
* *
123022 ATTATTATTATATAATA--TT
1 AATATCATTATATAATATTTT
123041 AATA--ATTATATAATATT
1 AATATCATTATATAATATT
123058 ATATAAATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
17 11 0.37
19 5 0.17
20 5 0.17
21 9 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
AATATCATTATATAATATTTT
Found at i:123050 original size:17 final size:18
Alignment explanation
Indices: 123009--123063 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 18
122999 TTAAATATCA
*
123009 TATATAATATTTTATTATTAT
1 TATATAATA--TTA-TATAAT
123030 TATATAATATTA-ATAAT
1 TATATAATATTATATAAT
123047 TATATAATATTATATAA
1 TATATAATATTATATAA
123064 ATTGATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
17 16 0.50
18 4 0.12
19 3 0.09
21 9 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATATAATATTATATAAT
Found at i:123051 original size:38 final size:41
Alignment explanation
Indices: 123009--123085 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 41
122999 TTAAATATCA
123009 TATATAATATT-T-T-ATT-ATTATTATATAATATTAATAAT
1 TATATAATATTATATAATTGATTATTATATAA-ATTAATAAT
123047 TATATAATATTATATAAATTGATTATTATATAAATTAAT
1 TATATAATATTATAT-AATTGATTATTATATAAATTAAT
123086 TATATTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
38 11 0.32
39 1 0.03
40 1 0.03
42 9 0.26
43 12 0.35
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (41 bp):
TATATAATATTATATAATTGATTATTATATAAATTAATAAT
Found at i:123098 original size:16 final size:17
Alignment explanation
Indices: 123021--123119 Score: 66
Period size: 16 Copynumber: 6.0 Consensus size: 17
123011 TATAATATTT
123021 TATTATT-ATTATATAA
1 TATTATTAATTATATAA
*
123037 TATTAATAATTATATAA
1 TATTATTAATTATATAA
*
123054 TATTATATAAATTGAT-TAT
1 TATTAT-T-AATT-ATATAA
* *
123073 TA-TATAAATTA-ATTA
1 TATTATTAATTATATAA
*
123088 TATTATTAATT-TAAAA
1 TATTATTAATTATATAA
* *
123104 TA-TACTAATTAAATAA
1 TATTATTAATTATATAA
123120 CTTAATTAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
15 11 0.17
16 24 0.38
17 14 0.22
18 4 0.06
19 8 0.13
20 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (17 bp):
TATTATTAATTATATAA
Found at i:123822 original size:30 final size:29
Alignment explanation
Indices: 123763--123834 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
123753 AATAATAAAT
123763 ATAGTTAATATTAAAATAATATAGTATTTA
1 ATAG-TAATATTAAAATAATATAGTATTTA
*
123793 ATA-TAATTATTAAAGATTATATA-TAATTTA
1 ATAGTAA-TATTAAA-ATAATATAGT-ATTTA
123823 ATAGTAATATTA
1 ATAGTAATATTA
123835 TAAAGCAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
28 3 0.08
29 8 0.22
30 23 0.62
31 3 0.08
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (29 bp):
ATAGTAATATTAAAATAATATAGTATTTA
Found at i:123955 original size:11 final size:10
Alignment explanation
Indices: 123921--123970 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
123911 TTTATTAATA
123921 ATAATTA-AT
1 ATAATTATAT
*
123930 ATTAATTGTATT
1 A-TAATTATA-T
123942 ATAATTATTAT
1 ATAATTA-TAT
123953 ATAATTA-AT
1 ATAATTATAT
123962 ATAATTATA
1 ATAATTATA
123971 ATAGTATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 10 0.29
10 6 0.18
11 14 0.41
12 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (10 bp):
ATAATTATAT
Found at i:124466 original size:181 final size:179
Alignment explanation
Indices: 124141--124864 Score: 543
Period size: 181 Copynumber: 4.0 Consensus size: 179
124131 TAAATAGATG
* * * * * ** *
124141 ATCTCCT-ATTTATTAATTTTTAAAATATTAATAAACTATTTTTATTTTATACT-AATTAAGCTC
1 ATCTCCTAACTTATTAATTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAA-TAAGCTT
* * * * * *
124204 GTATGATG-GAAAACAATTGTTTTATGACAAAATAGAAGTTTAAAATGATTTGAAATAGATAATT
65 GTATGAAGTG-AAACAATTGTTTTATGATAAAATAAAAGGTCAAAATGATTTAAAATAGATAATT
* * *
124268 GTTCAAATGGCCATAACTATTTGAATTGATTCGATAAAATGATTTATGTTTTAA
129 GTTTAAATAGTCATAACTATTTGAATTG-TTCGATAAAAT-ATTTAT-TTTTAA
* * * *
124322 ATCTCC-AACTTTTTAATTTTTGAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTT
1 ATCTCCTAACTTATTAATTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCTTG
* *
124386 TATGAAGTGAAACAATTGTTTTATGTTAAAATAAAAGGTCATAATGATTTTAAAAT-GATAATTG
66 TATGAAGTGAAACAATTGTTTTATGATAAAATAAAAGGTCAAAATGA-TTTAAAATAGATAATTG
* * * *
124450 TTTAAATAGTCATAACTATTTAAACTTGTTTGGT-AAATAATTTATTTTTTA
130 TTTAAATAGTCATAACTATTTGAA-TTGTTCGATAAAAT-ATTTATTTTTAA
** * * * * *
124501 AT-TCCTTGCTTATTAATTTTTTG-ATTGTTAATAAAATAGTATTATTTTATTTCGAATAAGCAT
1 ATCTCCTAACTTATTAA-TTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCTT
* * * *
124564 GTATGAATTG-AATAATTATTTTATGACT-AAACAAAAGGTCAAAATGATTTAAAATAGATAATT
65 GTATGAAGTGAAACAATTGTTTTATGA-TAAAATAAAAGGTCAAAATGATTTAAAATAGATAATT
* * * *
124627 ATTGT-AATAGT-ATTAACTATTTGAACTGGTTCAACAAATATATTTATTTTTTAA
129 GTT-TAAATAGTCA-TAACTATTTGAA-TTGTTCGATAAA-ATATTTA-TTTTTAA
* * * *** * * * *
124681 ATCT-CTTACTTACTAATTTTT-AGAATATTATTAGTTTAGCA-ATT-TTTGACTCTGAATAAGT
1 ATCTCCTAACTTATTAATTTTTGA-AATATTAATAAAATA--ATATTATTTTATTTTGAATAAGC
* * * * * *
124742 TTGTATAGACA--GAAACAATTGTTTTATGACAAAA-CAAAGATC-ATATCGATTTGAGATAGAT
63 TTGTAT-GA-AGTGAAACAATTGTTTTATGATAAAATAAAAGGTCAAAAT-GATTTAAAATAGAT
* * * *
124803 AATTATTCAAATAGTCATAACTATTTGAATTGTTCGATAAACAAATATAGTTTTTAA
125 AATTGTTTAAATAGTCATAACTATTTGAATTGTTCGATAAA-ATATTTA-TTTTTAA
124860 ATCTC
1 ATCTC
124865 TTATTAATTT
Statistics
Matches: 433, Mismatches: 83, Indels: 55
0.76 0.15 0.10
Matches are distributed among these distances:
177 9 0.02
178 64 0.15
179 97 0.22
180 106 0.24
181 144 0.33
182 13 0.03
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.43
Consensus pattern (179 bp):
ATCTCCTAACTTATTAATTTTTGAAATATTAATAAAATAATATTATTTTATTTTGAATAAGCTTG
TATGAAGTGAAACAATTGTTTTATGATAAAATAAAAGGTCAAAATGATTTAAAATAGATAATTGT
TTAAATAGTCATAACTATTTGAATTGTTCGATAAAATATTTATTTTTAA
Found at i:124677 original size:179 final size:180
Alignment explanation
Indices: 124214--124701 Score: 429
Period size: 178 Copynumber: 2.7 Consensus size: 180
124204 GTATGATGGA
* * * * * * * * *
124214 AAACAATTGTTTTATGAC-AAAATAGAAGTTTAAAATGA-TTTGAAATAGATAATTGTTCAAATG
1 AAACAATTATTTTATG-CTAAAACAAAAGGTCAAAATGATTTTAAAAT-GATAATTATTTAAATA
* * * * * * ** **
124277 GCCATAACTATTTGAATTGATTCGATA-AAATGATTTATGTTTTAAATCTCCAACTTTTTAA-TT
64 GTCATAACTATTTAAACTGGTTC-A-ACAAATAATTTATTTTTTAAATCTCTTACTTACTAATTT
* * * * * * *
124340 TTTGAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAAGTG
127 TTTG-ATTGTTAATAAAATAATATTATTTTATTTCGAATAAGCATGTATGAAGTG
* * * * *
124395 AAACAATTGTTTTATGTTAAAATAAAAGGTCATAATGATTTTAAAATGATAATTGTTTAAATAGT
1 AAACAATTATTTTATGCTAAAACAAAAGGTCAAAATGATTTTAAAATGATAATTATTTAAATAGT
* **** * * *
124460 CATAACTATTTAAACTTGTTTGGTAAATAATTTATTTTTTAATTC-CTTGCTTATTAATTTTTTG
66 CATAACTATTTAAACTGGTTCAACAAATAATTTATTTTTTAAATCTCTTACTTACTAATTTTTTG
* *
124524 ATTGTTAATAAAATAGTATTATTTTATTTCGAATAAGCATGTATGAATTG
131 ATTGTTAATAAAATAATATTATTTTATTTCGAATAAGCATGTATGAAGTG
*
124574 -AATAATTATTTTATGACT-AAACAAAAGGTCAAAATGA-TTTAAAATAGATAATTATTGT-AAT
1 AAACAATTATTTTATG-CTAAAACAAAAGGTCAAAATGATTTTAAAAT-GATAATTATT-TAAAT
*
124635 AGT-ATTAACTATTTGAACTGGTTCAACAAATATATTTATTTTTTAAATCTCTTACTTACTAATT
63 AGTCA-TAACTATTTAAACTGGTTCAACAAATA-ATTTATTTTTTAAATCTCTTACTTACTAATT
124699 TTT
126 TTT
124702 AGAATATTAT
Statistics
Matches: 250, Mismatches: 47, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
177 9 0.04
178 66 0.26
179 66 0.26
180 39 0.16
181 63 0.25
182 7 0.03
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.44
Consensus pattern (180 bp):
AAACAATTATTTTATGCTAAAACAAAAGGTCAAAATGATTTTAAAATGATAATTATTTAAATAGT
CATAACTATTTAAACTGGTTCAACAAATAATTTATTTTTTAAATCTCTTACTTACTAATTTTTTG
ATTGTTAATAAAATAATATTATTTTATTTCGAATAAGCATGTATGAAGTG
Found at i:125305 original size:16 final size:16
Alignment explanation
Indices: 125286--125349 Score: 78
Period size: 16 Copynumber: 4.0 Consensus size: 16
125276 AAATTATTTT
125286 AATATTTAA-AATATTA
1 AATATTTAATAATA-TA
*
125302 AATATGTTATTAATAT-
1 AATAT-TTAATAATATA
125318 AATATTTAATAATATA
1 AATATTTAATAATATA
*
125334 AATAGTTAATAATATA
1 AATATTTAATAATATA
125350 TTAAATTTCA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.21
16 25 0.60
17 4 0.10
18 4 0.10
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AATATTTAATAATATA
Found at i:125322 original size:32 final size:31
Alignment explanation
Indices: 125285--125349 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 31
125275 AAAATTATTT
*
125285 TAATATTTAA-AATATTAAATATGTTATTAATA
1 TAATATTTAATAATA-TAAATA-GTTAATAATA
125317 TAATATTTAATAATATAAATAGTTAATAATA
1 TAATATTTAATAATATAAATAGTTAATAATA
125348 TA
1 TA
125350 TTAAATTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 11 0.35
32 16 0.52
33 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (31 bp):
TAATATTTAATAATATAAATAGTTAATAATA
Found at i:127075 original size:14 final size:15
Alignment explanation
Indices: 127052--127096 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
127042 ATGAATTTAC
127052 AATT-ATAATATTAT
1 AATTCATAATATTAT
127066 AA-TCATAATATTAAT
1 AATTCATAATATT-AT
*
127081 AATTCA-AATATAAT
1 AATTCATAATATTAT
127095 AA
1 AA
127097 AATGAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 1 0.04
14 14 0.52
15 9 0.33
16 3 0.11
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (15 bp):
AATTCATAATATTAT
Found at i:127277 original size:20 final size:19
Alignment explanation
Indices: 127252--127314 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 19
127242 TATATATAAA
127252 TTATTATATAATTAATTAAC
1 TTATTATATAATTAATT-AC
* *
127272 TTATTAAAT-ATTATATTTC
1 TTATTATATAATTA-ATTAC
*
127291 -TATT-TATAATTAAATAC
1 TTATTATATAATTAATTAC
127308 TTATTAT
1 TTATTAT
127315 TATGCACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
17 5 0.15
18 12 0.35
19 6 0.18
20 11 0.32
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
TTATTATATAATTAATTAC
Found at i:127379 original size:18 final size:18
Alignment explanation
Indices: 127358--127403 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
127348 ACTTATTTGA
*
127358 ATATATAATGAATATTAT
1 ATATATAATCAATATTAT
* *
127376 ATATATATTCATTATTAT
1 ATATATAATCAATATTAT
127394 ATTATATAAT
1 A-TATATAAT
127404 TAACAATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
ATATATAATCAATATTAT
Found at i:127791 original size:29 final size:30
Alignment explanation
Indices: 127736--127800 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
127726 ATATATTATC
127736 TAATTATATTACTATAATAAATAATAA-TA
1 TAATTATATTACTATAATAAATAATAACTA
* * *
127765 TAATTATATTAGTTTAA-ATAATTATAACTA
1 TAATTATATTACTATAATA-AATAATAACTA
127795 TAATTA
1 TAATTA
127801 ATAGTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 22 0.71
30 8 0.26
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.45
Consensus pattern (30 bp):
TAATTATATTACTATAATAAATAATAACTA
Found at i:128245 original size:21 final size:21
Alignment explanation
Indices: 128220--128260 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
128210 TTATTAAACC
*
128220 ATTATAATTATTATATTATAT
1 ATTATAATTATTATAATATAT
*
128241 ATTATATTTATTATAATATA
1 ATTATAATTATTATAATATA
128261 ATTGTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATAATTATTATAATATAT
Found at i:128590 original size:27 final size:26
Alignment explanation
Indices: 128560--128655 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 26
128550 TATATTAACT
128560 TATAATTATTAAATTATATTTAAATAA
1 TATAATTA-TAAATTATATTTAAATAA
* *
128587 TATAATGTTTAAATTATTTATTATAATAA
1 TATAAT-TATAAATTATAT-TTA-AATAA
*
128616 TACAA-TAT-AATT-TA-TTAAATAA
1 TATAATTATAAATTATATTTAAATAA
128638 T-TAAATTATAACATTATA
1 TAT-AATTATAA-ATTATA
128656 ATATATTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
22 8 0.15
23 6 0.11
24 1 0.02
25 4 0.07
26 6 0.11
27 17 0.31
28 4 0.07
29 9 0.16
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (26 bp):
TATAATTATAAATTATATTTAAATAA
Found at i:128987 original size:12 final size:12
Alignment explanation
Indices: 128970--129004 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
128960 TTTAATTTTC
128970 TTAATTTATAAA
1 TTAATTTATAAA
128982 TTAATTTATAAA
1 TTAATTTATAAA
128994 TTAATTTATAA
1 TTAATTTATAA
129005 TTGTATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
TTAATTTATAAA
Found at i:135135 original size:40 final size:40
Alignment explanation
Indices: 135080--135155 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
135070 TGTTGAGTTG
* *
135080 TGTTGGATTAGGATGCATAAATTAAGGGGGAGTTTTGCCA
1 TGTTGGATTAGGATGCACAAATTAAAGGGGAGTTTTGCCA
135120 TGTTGGATTAGGATGCACAAATTAAAGGGGAGTTTT
1 TGTTGGATTAGGATGCACAAATTAAAGGGGAGTTTT
135156 CCAAAATGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.29, C:0.07, G:0.32, T:0.33
Consensus pattern (40 bp):
TGTTGGATTAGGATGCACAAATTAAAGGGGAGTTTTGCCA
Found at i:137689 original size:17 final size:17
Alignment explanation
Indices: 137667--137705 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
137657 TTATCTGTTT
137667 TAATAATATCT-ATATAA
1 TAATAATA-CTAATATAA
*
137684 TAATAATACTAATTTAA
1 TAATAATACTAATATAA
137701 TAATA
1 TAATA
137706 TAATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATACTAATATAA
Found at i:137701 original size:14 final size:14
Alignment explanation
Indices: 137665--137712 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
137655 TTTTATCTGT
137665 TTTAATAATATCTATA
1 TTTAATAATA-CTA-A
*
137681 TAATAATAATACTAA
1 T-TTAATAATACTAA
137696 TTTAATAATA-TAA
1 TTTAATAATACTAA
137709 TTTA
1 TTTA
137713 TATATTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 7 0.24
14 8 0.28
15 2 0.07
16 4 0.14
17 8 0.28
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (14 bp):
TTTAATAATACTAA
Found at i:137721 original size:14 final size:13
Alignment explanation
Indices: 137684--137723 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
137674 ATCTATATAA
137684 TAATAATACTAATT
1 TAATAATA-TAATT
137698 TAATAATATAATT
1 TAATAATATAATT
*
137711 TATATATTATAAT
1 TA-ATAATATAAT
137724 AAGTAAATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 7 0.29
14 17 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATAATATAATT
Found at i:138232 original size:18 final size:21
Alignment explanation
Indices: 138209--138259 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
138199 TTATGACTTT
138209 TTAATAATTATT-A-AAA-TA
1 TTAATAATTATTAATAAATTA
138227 TTAATAATTATTAATAAATTA
1 TTAATAATTATTAATAAATTA
*
138248 TTAATAAATATT
1 TTAATAATTATT
138260 TTATATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 12 0.41
19 1 0.03
20 3 0.10
21 13 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATAATTATTAATAAATTA
Found at i:138246 original size:11 final size:11
Alignment explanation
Indices: 138209--138256 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
138199 TTATGACTTT
138209 TTAAT-AATTA
1 TTAATAAATTA
138219 TT-A-AAA-TA
1 TTAATAAATTA
138227 TTAAT-AATTA
1 TTAATAAATTA
138237 TTAATAAATTA
1 TTAATAAATTA
138248 TTAATAAAT
1 TTAATAAAT
138257 ATTTTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.12
9 6 0.18
10 9 0.27
11 14 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATAAATTA
Found at i:138696 original size:16 final size:17
Alignment explanation
Indices: 138674--138720 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
138664 GAGTAATTCA
138674 AATATT-ATATATTAATT
1 AATATTAATA-ATTAATT
138691 -ATATTAATAATTAATT
1 AATATTAATAATTAATT
*
138707 AATATTAATTATTA
1 AATATTAATAATTA
138721 TAAATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTAATAATTAATT
Found at i:138733 original size:26 final size:26
Alignment explanation
Indices: 138673--138735 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
138663 AGAGTAATTC
*
138673 AAATATTATATATTAATTATATTAAT
1 AAATATTATATATTAATTATATAAAT
*
138699 AATTAATTA-ATATTAATTATTATAAAT
1 AAAT-ATTATATATTAATTA-TATAAAT
138726 AAATATTATA
1 AAATATTATA
138736 ATGTTAGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
AAATATTATATATTAATTATATAAAT
Found at i:140049 original size:36 final size:39
Alignment explanation
Indices: 139955--140049 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 39
139945 TAATAGTGAA
*
139955 TTATATTAAATTATTAATAATAATAGCTTATTATTAAATT
1 TTATATTAAATTATTAATAATAATAGCATATTATT-AATT
* * *
139995 TTATATTTAATAATTTAAT-ATAATTG-ATATTATT-ATT
1 TTATATTAAATTA-TTAATAATAATAGCATATTATTAATT
140032 TGTA-ATTAAATTATTAAT
1 T-TATATTAAATTATTAAT
140050 TAAAATATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
36 5 0.11
37 11 0.23
38 2 0.04
39 7 0.15
40 17 0.36
41 5 0.11
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (39 bp):
TTATATTAAATTATTAATAATAATAGCATATTATTAATT
Found at i:140331 original size:19 final size:20
Alignment explanation
Indices: 140290--140331 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
140280 TAGTTATAAC
* *
140290 AATTATAAATATAATTTATA
1 AATTATAAATATAATTAAAA
*
140310 AATTATGAA-ATAATTAAAA
1 AATTATAAATATAATTAAAA
140329 AAT
1 AAT
140332 ATTATTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AATTATAAATATAATTAAAA
Found at i:140494 original size:26 final size:25
Alignment explanation
Indices: 140465--140521 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
140455 ATAATGATAT
*
140465 TAAT-TTAATTCATATATTAATATTAA
1 TAATATTAATT-AGATATTAAT-TTAA
*
140491 TAATAGTTAATTAGATATTAGTTTAA
1 TAATA-TTAATTAGATATTAATTTAA
140517 TAATA
1 TAATA
140522 ATATATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.48
27 8 0.30
28 6 0.22
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (25 bp):
TAATATTAATTAGATATTAATTTAA
Found at i:140542 original size:27 final size:27
Alignment explanation
Indices: 140507--140574 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
140497 TTAATTAGAT
140507 ATTAGTTTAATAATAAT-ATATAAAATA
1 ATTAGTTT-ATAATAATAATATAAAATA
* * *
140534 ATTAGTTTATAACATTAATATAATATA
1 ATTAGTTTATAATAATAATATAAAATA
*
140561 ATTAATTTTATAAT
1 ATT-AGTTTATAAT
140575 TAATTAACTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.18
27 20 0.59
28 8 0.24
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (27 bp):
ATTAGTTTATAATAATAATATAAAATA
Found at i:140696 original size:26 final size:27
Alignment explanation
Indices: 140667--140727 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
140657 TAATTAATCT
*
140667 AATAAATTAATA-TTAATTATATTA-TA
1 AATAAATTAATAGTTAATAAT-TTATTA
140693 AATAAATTAATAGTTAATAATTTATTA
1 AATAAATTAATAGTTAATAATTTATTA
*
140720 TATAAATT
1 AATAAATT
140728 TATAAATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
AATAAATTAATAGTTAATAATTTATTA
Found at i:140718 original size:94 final size:93
Alignment explanation
Indices: 140550--140719 Score: 202
Period size: 94 Copynumber: 1.8 Consensus size: 93
140540 TTATAACATT
* * * * *
140550 AATATAATATAATTAATTTTATAATTAATTAACTATTAATTATATTAAATTTATATATAAAATTT
1 AATATAATATAATTAATTATATAATAAATTAACTATTAATTATATTAAATATAAATATAAAATTA
140615 ATAAATTATTAGTATTAGTTATTATATA
66 ATAAATTATTAGTATTAGTTATTATATA
* *
140643 AATACTAATATACTTAATTAATCTAATAAATTAA-TATTAATTATATTATAA-ATAAAT-TAATA
1 AATA-TAATATAATTAATT-ATATAATAAATTAACTATTAATTATATTA-AATATAAATATAA-A
* *
140705 GTTAATAATTTATTA
62 ATTAATAAATTATTA
140720 TATAAATTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
93 7 0.11
94 44 0.69
95 13 0.20
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (93 bp):
AATATAATATAATTAATTATATAATAAATTAACTATTAATTATATTAAATATAAATATAAAATTA
ATAAATTATTAGTATTAGTTATTATATA
Found at i:141014 original size:17 final size:16
Alignment explanation
Indices: 140994--141034 Score: 50
Period size: 14 Copynumber: 2.6 Consensus size: 16
140984 TTTGTAGTAA
*
140994 TTATAATTATTAATTAC
1 TTATAATTATT-ACTAC
141011 TTATAA-T-TTACTAC
1 TTATAATTATTACTAC
141025 TTATAATTAT
1 TTATAATTAT
141035 AATATAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 10 0.48
15 3 0.14
16 2 0.10
17 6 0.29
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (16 bp):
TTATAATTATTACTAC
Found at i:141095 original size:19 final size:20
Alignment explanation
Indices: 141060--141106 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
141050 ATAATATTAT
141060 TATTAGATAATTAAATTGTTA
1 TATTA-ATAATTAAATTGTTA
*
141081 TATTAATAATT-AATTTTTA
1 TATTAATAATTAAATTGTTA
*
141100 AATTAAT
1 TATTAAT
141107 TATACATCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.54
20 6 0.25
21 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TATTAATAATTAAATTGTTA
Found at i:141388 original size:22 final size:20
Alignment explanation
Indices: 141362--141404 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
141352 ATTTAACTTC
*
141362 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
141384 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
141404 A
1 A
141405 CAATTGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:141704 original size:23 final size:23
Alignment explanation
Indices: 141678--141733 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
141668 TTAGTCAATA
*
141678 ATTAAAATATTA-ATTAATTATAT
1 ATTAAAATATCATATTAATTA-AT
* * *
141701 ATTATAATAACATTTTAATTAAT
1 ATTAAAATATCATATTAATTAAT
141724 ATTAAAATAT
1 ATTAAAATAT
141734 GACTAATATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTAAAATATCATATTAATTAAT
Found at i:141781 original size:21 final size:21
Alignment explanation
Indices: 141747--141796 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 21
141737 TAATATTTTA
*
141747 ATATTTAATAATAATATTATAAAT
1 ATATTTGATAAT-A-ATTA-AAAT
*
141771 TTATTTGATAATAATTAAAAT
1 ATATTTGATAATAATTAAAAT
141792 ATATT
1 ATATT
141797 GTAATCATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 8 0.35
22 4 0.17
23 1 0.04
24 10 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATTTGATAATAATTAAAAT
Found at i:141939 original size:23 final size:22
Alignment explanation
Indices: 141913--141960 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
141903 ACAGTTTTAA
*
141913 ATTTAATAAATTATTTAATTATT
1 ATTTAATAAATTATAT-ATTATT
*
141936 ATTTAATAGATTATATATTATT
1 ATTTAATAAATTATATATTATT
141958 ATT
1 ATT
141961 ATTCATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTTAATAAATTATATATTATT
Found at i:142455 original size:176 final size:178
Alignment explanation
Indices: 142059--142457 Score: 411
Period size: 176 Copynumber: 2.2 Consensus size: 178
142049 CTAATTTTAT
*
142059 TCCAAATAAGCTT-TTATGAACTA-AAATAATTGTTTTATGACTAAACAGAAGGATAGAATGATT
1 TCCAAATAA-CTTCTTATGAAC-AGAAATAATTGTTTTATGAC-AAACAGAAAGATAGAATGATT
** * * *
142122 TGAGATAGATAATTATTCTGATAGTCTTAACTATTTGAAATAGTTCAGCTAATATATTTATTTTT
63 TGAGATAGATAATTATTCAAATAGTCATAACTATTTGAAATAGTTCAGCTAATAAATTTATGTTT
* * * **
142187 TTAAAATCTCTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTCAA
128 TTAAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTCAA
* * * * * **
142238 TCCAAATAAGCTTGTT-TGAA-AGGAAACAATTGCTATATGACAAA-ATAAAGATCATTATGATT
1 TCCAAATAA-CTTCTTATGAACA-GAAATAATTGTTTTATGACAAACAGAAAGAT-AGAATGATT
* * * *
142300 TGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTTAG-TAAATAAATTTA-GTT
63 TGAGATAGATAATTATTCAAATAGTCATAACTATTTGAAATAGTTCAGCT-AATAAATTTATGTT
* * *
142363 TTT-AAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATTATTTGAT
127 TTTAAAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTCAA
***
142414 TTTGAATAA-TTCTATATGAACAGAAATAATTGTTTTATGACAAA
1 TCCAAATAACTTCT-TATGAACAGAAATAATTGTTTTATGACAAA
142458 TTATTAAATA
Statistics
Matches: 181, Mismatches: 31, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
174 3 0.02
175 1 0.01
176 69 0.38
177 14 0.08
178 60 0.33
179 32 0.18
180 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (178 bp):
TCCAAATAACTTCTTATGAACAGAAATAATTGTTTTATGACAAACAGAAAGATAGAATGATTTGA
GATAGATAATTATTCAAATAGTCATAACTATTTGAAATAGTTCAGCTAATAAATTTATGTTTTTA
AAATCTCTTATTAATTTTTAAAATATTAATAAATCAAAATCATTTCAA
Found at i:142616 original size:6 final size:6
Alignment explanation
Indices: 142585--142648 Score: 64
Period size: 6 Copynumber: 11.0 Consensus size: 6
142575 AATTGATAAT
* *
142585 ATATTA AT-TTA AT-TAA ATATTT ATATTA ATATTTAA ATATTA ATA-TA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATA-TT-A ATATTA ATATTA
142632 A-ATTA ATATTA ATATTA
1 ATATTA ATATTA ATATTA
142649 TTAATTTAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
4 1 0.02
5 15 0.31
6 25 0.51
7 4 0.08
8 4 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:142622 original size:20 final size:20
Alignment explanation
Indices: 142597--142692 Score: 64
Period size: 20 Copynumber: 5.0 Consensus size: 20
142587 ATTAATTTAA
142597 TTAAATATTTATATTAATAT
1 TTAAATATTTATATTAATAT
*
142617 TTAAATATTAATA-TAA-A-
1 TTAAATATTTATATTAATAT
* *
142634 TT-AATATTAATATTATTAAT
1 TTAAATATTTATATTAAT-AT
142654 TTAAATTAATTTATGA-TAA-A-
1 TTAAA-T-ATTTAT-ATTAATAT
*
142674 TTATATATTTAT-TTAATAT
1 TTAAATATTTATATTAATAT
142693 ATTATACAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 23
0.68 0.06 0.26
Matches are distributed among these distances:
16 10 0.17
17 7 0.12
18 8 0.13
19 5 0.08
20 18 0.30
21 3 0.05
22 1 0.02
23 7 0.12
24 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (20 bp):
TTAAATATTTATATTAATAT
Found at i:142625 original size:36 final size:35
Alignment explanation
Indices: 142585--142666 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 35
142575 AATTGATAAT
*
142585 ATATTAATTTAATTAAATATTTATATTAAT-ATTTAA
1 ATATTAATTTAATT-AATATTAATATTAATAATTT-A
* *
142621 ATATTAATATAAATTAATATTAATATTATTAATTTA
1 ATATTAAT-TTAATTAATATTAATATTAATAATTTA
142657 A-ATTAATTTA
1 ATATTAATTTA
142667 TGATAAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 2 0.05
35 6 0.15
36 23 0.57
37 9 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (35 bp):
ATATTAATTTAATTAATATTAATATTAATAATTTA
Found at i:142676 original size:25 final size:25
Alignment explanation
Indices: 142585--142663 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 25
142575 AATTGATAAT
* *
142585 ATATTAATTTAATTAAATATTTATATTA
1 ATATTAATATAATT-AATA--TAAATTA
142613 ATATTTAA-AT-ATTAATATAAATTA
1 ATA-TTAATATAATTAATATAAATTA
* *
142637 ATATTAATATTATTAATTTAAATTA
1 ATATTAATATAATTAATATAAATTA
142662 AT
1 AT
142664 TTATGATAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 4 0.09
24 11 0.24
25 15 0.33
26 4 0.09
27 3 0.07
28 4 0.09
29 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATATTAATATAATTAATATAAATTA
Found at i:143020 original size:13 final size:13
Alignment explanation
Indices: 143004--143041 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
142994 CATGATTATA
143004 ATAATTTATAAAT
1 ATAATTTATAAAT
143017 ATAA-TTATTAAAT
1 ATAATTTA-TAAAT
143030 ATATATTTATAA
1 ATA-ATTTATAA
143042 CAATTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 12 0.55
14 4 0.18
15 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATAATTTATAAAT
Found at i:143023 original size:22 final size:22
Alignment explanation
Indices: 142980--143024 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
142970 TATTTGTAGT
* *
142980 TAATATTTATTAATCATGATTA
1 TAATATTTATAAATCATAATTA
143002 TAATAATTTATAAAT-ATAATTA
1 TAAT-ATTTATAAATCATAATTA
143024 T
1 T
143025 TAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TAATATTTATAAATCATAATTA
Found at i:144072 original size:17 final size:17
Alignment explanation
Indices: 144050--144088 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
144040 TTATCTGTTT
144050 TAATAATATCT-ATATAA
1 TAATAATA-CTAATATAA
*
144067 TAATAATACTAATTTAA
1 TAATAATACTAATATAA
144084 TAATA
1 TAATA
144089 TAATTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATACTAATATAA
Found at i:144084 original size:14 final size:14
Alignment explanation
Indices: 144048--144095 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
144038 TTTTATCTGT
144048 TTTAATAATATCTATA
1 TTTAATAATA-CTA-A
*
144064 TAATAATAATACTAA
1 T-TTAATAATACTAA
144079 TTTAATAATA-TAA
1 TTTAATAATACTAA
144092 TTTA
1 TTTA
144096 TATATTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 7 0.24
14 8 0.28
15 2 0.07
16 4 0.14
17 8 0.28
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (14 bp):
TTTAATAATACTAA
Found at i:144104 original size:14 final size:13
Alignment explanation
Indices: 144067--144106 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
144057 ATCTATATAA
144067 TAATAATACTAATT
1 TAATAATA-TAATT
144081 TAATAATATAATT
1 TAATAATATAATT
*
144094 TATATATTATAAT
1 TA-ATAATATAAT
144107 AAGTATATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 7 0.29
14 17 0.71
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
TAATAATATAATT
Found at i:144615 original size:18 final size:21
Alignment explanation
Indices: 144592--144642 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
144582 TTATGACTTT
144592 TTAATAATTATT-A-AAA-TA
1 TTAATAATTATTAATAAATTA
144610 TTAATAATTATTAATAAATTA
1 TTAATAATTATTAATAAATTA
*
144631 TTAATAAATATT
1 TTAATAATTATT
144643 TTATATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 12 0.41
19 1 0.03
20 3 0.10
21 13 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATAATTATTAATAAATTA
Found at i:144629 original size:11 final size:11
Alignment explanation
Indices: 144592--144639 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
144582 TTATGACTTT
144592 TTAAT-AATTA
1 TTAATAAATTA
144602 TT-A-AAA-TA
1 TTAATAAATTA
144610 TTAAT-AATTA
1 TTAATAAATTA
144620 TTAATAAATTA
1 TTAATAAATTA
144631 TTAATAAAT
1 TTAATAAAT
144640 ATTTTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.12
9 6 0.18
10 9 0.27
11 14 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAATAAATTA
Found at i:144750 original size:4 final size:4
Alignment explanation
Indices: 144743--144771 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
144733 ATATTTATCA
144743 AAAT AAAT AAAT AAAT AAAT -AAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
144772 TAATTAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:145401 original size:181 final size:180
Alignment explanation
Indices: 145087--147002 Score: 1631
Period size: 181 Copynumber: 10.7 Consensus size: 180
145077 TAAAAATTAA
* * * *
145087 TAAGAGATTTAAAAAATGAATTTGGTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAAT
1 TAAGAGATTTAAAAAATAAATTTGTTTACC-AACTAATTCAAATAGTTATGACTATTTGAACAAT
* * * * * * *
145152 TTTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAAAAATTATTTCTTTTCATACAAGC
65 TATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAAGC
* * * * * * *
145217 TTATTCAAAATAAAACAACACTAATCTAATAATATTCCAAAAATTAATAAC
130 TTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * *
145268 TAAGGGATTTAAAAAATAAATTTGTTTACCGAACTAATTCAAATAGTTAAGACTATATGAACAAT
1 TAAGAGATTTAAAAAATAAATTTGTTTACC-AACTAATTCAAATAGTTATGACTATTTGAACAAT
* * ** *
145333 TATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCATACTAG
65 TATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATT-TCTGTTCATACAAG
* * * *
145397 CTTATTTGAAATAAATTAA-AATGAATTTATTAATATTTCAAAAAATAATAAG
129 CTTATTCGAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAG
* * * * * *
145449 TAAGAGACTTAAAAAATAATTTTGTTTACCTAACCAGTTCAAAAAATTAT-ACTA-TTGAACAAT
1 TAAGAGATTTAAAAAATAAATTTGTTTACC-AACTAATTCAAATAGTTATGACTATTTGAACAAT
* * * * * * * * *
145512 TATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGT
65 TATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAAGC
* *
145577 TTATTC-AGAATAAAGTAATACTAATCTATTAATATTTCAAAAATTAATAAG
130 TTATTCGA-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * *
145628 T--G-G-TTTAGACAATAAATCTATGTAT-CAAACTAGTTCAAATAGTTATGATTATTTGAGCAA
1 TAAGAGATTTAAAAAATAAAT-T-TGTTTACCAACTAATTCAAATAGTTATGACTATTTGAACAA
* * ** * *
145688 TTATTTATTTCAGATCATTATGA-CTTGTTGTTTTGT--TGTAACAATTGTTTCTATTCATACAA
64 TTATCTATTTCAAATCATTATGACCTT-TTGTTTTGTCATAAAACAATTATTTCTGTTCATACAA
* * * ** * *
145750 GCTT-TTTGCATTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAG
128 GCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * *
145802 TAAAAAATTTTAAAAAT--A--TGTTTACCACACTAGA-TCAAATAATCATGA-TAATTTGAATA
1 TAAGAGATTTAAAAAATAAATTTGTTTACCA-ACTA-ATTCAAATAGTTATGACT-ATTTGAACA
** * * * * * *
145861 ATTTATCTATTTCAAATTGTTATAACCTTTTGATTTGTCATAAAAGAGTTGTTT-TAGTTCATAT
63 A-TTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCT-GTTCATAC
* * *
145925 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-
126 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * ** * * * * *
145979 TAAAGAGATTTAAAAAATGACTTTGTTTATTAAACAAATTAAAATAATTAAGACTATTTGAATAA
1 T-AAGAGATTTAAAAAATAAATTTGTTTA-CCAACTAATTCAAATAGTTATGACTATTTGAACAA
* * * * * * *
146044 TTATCTATTTGAAAT-AGCTATAACCTTTTGTTTTGTAATGAAAGAATTTTTTCTGTTCAT-CTA
64 TTATCTATTTCAAATCA-TTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATAC-A
** * *
146107 AGCTTATTTTAAATAAAATAATACAAATTTATTAATA-TT-AAGACAGTTAATAAG
127 AGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAA-A-AATTAATAAG
* * * * * * *
146161 TAAAAGATTT-AAAAATAAATCTGTTTACCAAATAAGTTCTAATCGTTATGGCTATTTGAGCAAT
1 TAAGAGATTTAAAAAATAAATTTGTTTACCAACTAA-TTCAAATAGTTATGACTATTTGAACAAT
* * ** *
146225 TATTTATTTCAACAT-GTTATGATTTTTTGTTTTGTCATAAAATAATTATTTCTGTTCATACAAG
65 TATCTATTTCAA-ATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAAG
* * ** * ** *
146289 TTTATTCGAATTAAAATAATGTTAATTAATTAATATTTTGACAATTAATAAG
129 CTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * * * * *
146341 TAAAAGATTTAAAAAATAAATATATTTACCAAATAAGTTCAAATAATCATTAATATTTCAATAAT
1 TAAGAGATTTAAAAAATAAATTTGTTTACCAACTAA-TTCAAATAGTTATGACTATTTGAACAAT
* * * * * ** *
146406 TATCTATTTCAAATCATTATGACCTTTTCTTTTCTAATAAAACACTTGTTTCAATTCATATAAGC
65 TATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAAGC
* * * * *
146471 TTATTTGAAGTAAGATAATACTAATTTATTAATATTCCAAAAATTAATGAG
130 TTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * *
146522 TGAGAGAATTAAAAAA-AGATTATGTTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACA
1 TAAGAGATTTAAAAAATAAATT-TGTTTA-CCAACTAA-TTCAAATAGTTATGACTATTTGAACA
* * *
146585 ATTATCTATTTCAAAACATTATGACCTTTTGTTTTGTCATAAAACAATTAGCTTC-GTTCATGCA
63 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTA-TTTCTGTTCATACA
* * *
146649 AGCTTATTTCG-AATAAAATAAT-TTAAATTTATTAATATTCCATAAATTAATAAG
127 AGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAG
* * * *
146703 TAA-A-ATTTTAAAAAATAAATATGTTTTCTGAAC-ACATTCAAATAGTTATGACTATTTGAAGA
1 TAAGAGA-TTTAAAAAATAAATTTGTTTAC-CAACTA-ATTCAAATAGTTATGACTATTTGAACA
* * * * *
146765 AATATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAACCAATTATTTCTGGTCATAAAA
63 ATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAA
* * * *
146830 GTTTTTTTCGAAATAAAATAGTACTAATTTATTAAAATTTCAAAAATTAATAAG
128 G-CTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* *
146884 TCAA-AGATTTAAAAAAATAAATCTGTTTACCAAGC-AAGTTCAAATAGTTATGACTATTTGAAT
1 T-AAGAGATTT-AAAAAATAAATTTGTTTACCAA-CTAA-TTCAAATAGTTATGACTATTTGAAC
* * * * * *
146947 AATTATTTATTTCAAATCGTTATGATCTTTTGTTTTATCATAAAACGATTTTTTCT
62 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCT
147003 ATTCGAGATA
Statistics
Matches: 1387, Mismatches: 283, Indels: 128
0.77 0.16 0.07
Matches are distributed among these distances:
172 4 0.00
173 3 0.00
174 63 0.05
175 75 0.05
176 13 0.01
177 64 0.05
178 58 0.04
179 110 0.08
180 249 0.18
181 603 0.43
182 52 0.04
183 93 0.07
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (180 bp):
TAAGAGATTTAAAAAATAAATTTGTTTACCAACTAATTCAAATAGTTATGACTATTTGAACAATT
ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTATTTCTGTTCATACAAGCT
TATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
Found at i:146306 original size:361 final size:359
Alignment explanation
Indices: 145073--147002 Score: 1641
Period size: 361 Copynumber: 5.4 Consensus size: 359
145063 TATATTAATT
* * * * **
145073 ATATT-AAAAATTAATAAG----AGATTTAAAAAATGAATTTGGTTACCGAACCAGTTCAAATAG
1 ATATTCAAAAATTAATAAGTAAAAGATTT-AAAAATAAATCTGTTTACCAAATAAGTTCAAATAG
* * * * * * *
145133 TTATGACTATTTGAACAATTTTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAAAAAT
65 TTATGACTATTTGAACAATTATCTATTTCAAAT-GTTATGACCTTTTGTTTTGTCATAAAACAAT
* * * * * *
145198 TATTTCTTTTCATACAAGCTTATTCAAAATAAAACAACACTAATCTAATAATATTCCAAAAATTA
129 TATTTCTGTTCATACAAGCTTATTC-GAATAAAATAATACTAATTTATTAATATTCCAAAAATTA
* * * * * * * *
145263 ATAACT-AAGGGATTTAAAAAATAAATTTGTTTACCGAACTAATTCAAATAGTTAAGACTATATG
193 ATAAGTAAAGAGATTTAAAAAATAAATATGTTTATCAAACAAATTCAAATAGTTATGACTATTTG
* * * *
145327 AACAATTATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCA
258 AACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTT-TCTATTCA
* *
145391 TACT-AGCTTATTTGAAATAAATTAA-AATGAATTTATTA
322 T-CTAAGCTTATTTGAAATAAAATAATACT-AATTTATTA
* * * * * * ** *
145429 ATATTTCAAAAAATAATAAGTAAGAGACTTAAAAAATAATTTTGTTTACCTAACCAGTTCAAAAA
1 ATA-TTCAAAAATTAATAAGTAAAAGA-TTTAAAAATAAATCTGTTTACCAAATAAGTTCAAATA
* * * * * *
145494 ATTAT-ACTA-TTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAA
64 GTTATGACTATTTGAACAATTATCTATTTCAAAT-GTTATGACCTTTTGTTTTGTCATAAAACAA
* * * * * * * *
145557 ATGTTTTTGTTCATATAAGTTTATTCAGAATAAAGTAATACTAATCTATTAATATTTCAAAAATT
128 TTATTTCTGTTCATACAAGCTTATTC-GAATAAAATAATACTAATTTATTAATATTCCAAAAATT
* * * * * * * *
145622 AATAAGT---G-G-TTTAGACAATAAATCTATGTATCAAACTAGTTCAAATAGTTATGATTATTT
192 AATAAGTAAAGAGATTTAAAAAATAAATATGTTTATCAAACAAATTCAAATAGTTATGACTATTT
* * * **
145682 GAGCAATTATTTATTTCAGATCATTATGA-CTTGTTGTTTTGT--TGTAACAATTGTTTCTATTC
257 GAACAATTATCTATTTCAAATCATTATGACCTT-TTGTTTTGTAATAAAACAATTGTTTCTATTC
* *
145744 ATAC-AAGCTT-TTTGCATTAAAATAATACTAATTTATTA
321 AT-CTAAGCTTATTTGAAATAAAATAATACTAATTTATTA
** * * * * *
145782 ATATTTTGACAATTAGTAAGTAAAAAATTTTAAAAAT--A--TGTTTACCACACT-AGATCAAAT
1 ATA-TTCAAAAATTAATAAGTAAAAGA-TTTAAAAATAAATCTGTTTACCA-AATAAGTTCAAAT
* * * * *
145842 AATCATGA-TAATTTGAATAATTTATCTATTTCAAATTGTTATAACCTTTTGATTTGTCATAAAA
63 AGTTATGACT-ATTTGAACAA-TTATCTATTTCAAA-TGTTATGACCTTTTGTTTTGTCATAAAA
* * * * * *
145906 GAGTTGTTT-TAGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAA
125 CAATTATTTCT-GTTCATACAAGCTTATTC-GAATAAAATAATACTAATTTATTAATATTCCAAA
* * * * * * *
145970 AATTAATAA-TAAAGAGATTTAAAAAATGACTTTGTTTATTAAACAAATTAAAATAATTAAGACT
188 AATTAATAAGTAAAGAGATTTAAAAAATAAATATGTTTATCAAACAAATTCAAATAGTTATGACT
* * * * * * *
146034 ATTTGAATAATTATCTATTTGAAAT-AGCTATAACCTTTTGTTTTGTAATGAAAGAATTTTTTCT
253 ATTTGAACAATTATCTATTTCAAATCA-TTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCT
* * *
146098 GTTCATCTAAGCTTATTTTAAATAAAATAATACAAATTTATTA
317 ATTCATCTAAGCTTATTTGAAATAAAATAATACTAATTTATTA
* * *
146141 ATATT-AAGACAGTTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCTAATC
1 ATATTCAA-A-AATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCAAATA
* * * ** *
146205 GTTATGGCTATTTGAGCAATTATTTATTTCAACATGTTATGATTTTTTGTTTTGTCATAAAATAA
64 GTTATGACTATTTGAACAATTATCTATTTCAA-ATGTTATGACCTTTTGTTTTGTCATAAAACAA
* ** * *** *
146270 TTATTTCTGTTCATACAAGTTTATTCGAATTAAAATAATGTTAATTAATTAATATTTTGACAATT
128 TTATTTCTGTTCATACAAGCTTATTCGAA-TAAAATAATACTAATTTATTAATATTCCAAAAATT
* * * * * * * *
146335 AATAAGTAAA-AGATTTAAAAAATAAATATATTTACCAAATAAGTTCAAATAATCATTAATATTT
192 AATAAGTAAAGAGATTTAAAAAATAAATATGTTTATCAAACAAATTCAAATAGTTATGACTATTT
* * * * * *
146399 CAATAATTATCTATTTCAAATCATTATGACCTTTTCTTTTCTAATAAAACACTTGTTTCAATTCA
257 GAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCTATTCA
* * *
146464 TATAAGCTTATTTGAAGTAAGATAATACTAATTTATTA
322 TCTAAGCTTATTTGAAATAAAATAATACTAATTTATTA
* * * * * * *
146502 ATATTCCAAAAATTAATGAGTGAGAGAATTAAAAA-AAGATTATGTTTATCGAATAAGTTCAAAT
1 ATATT-CAAAAATTAATAAGTAAAAGATTTAAAAATAA-A-TCTGTTTACCAAATAAGTTCAAAT
**
146566 AGTTATGACTATTTGAACAATTATCTATTTCAAAACATTATGACCTTTTGTTTTGTCATAAAACA
63 AGTTATGACTATTTGAACAATTATCTATTTC-AAATGTTATGACCTTTTGTTTTGTCATAAAACA
* * * *
146631 ATTAGCTTC-GTTCATGCAAGCTTATTTCGAATAAAATAAT-TTAAATTTATTAATATTCCATAA
127 ATTA-TTTCTGTTCATACAAGCTTA-TTCGAATAAAATAATACT-AATTTATTAATATTCCAAAA
* * *
146694 ATTAATAAGTAAA-A-TTTTAAAAAATAAATATGTTT-TCTGAACACATTCAAATAGTTATGACT
189 ATTAATAAGTAAAGAGATTTAAAAAATAAATATGTTTATC-AAACAAATTCAAATAGTTATGACT
* * * * * * *
146756 ATTTGAAGAAATATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAACCAATTATTTCTG
253 ATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCTA
* ** * * *
146821 GTCATAAAAGTTTTTTTCGAAATAAAATAGTACTAATTTATTA
318 TTCATCTAAGCTTATTT-GAAATAAAATAATACTAATTTATTA
* * **
146864 AAATTTCAAAAATTAATAAGTCAAAGATTTAAAAAAATAAATCTGTTTACCAAGCAAGTTCAAAT
1 ATA-TTCAAAAATTAATAAGTAAAAGATTT--AAAAATAAATCTGTTTACCAAATAAGTTCAAAT
* * * * *
146929 AGTTATGACTATTTGAATAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTATCATAAAACG
63 AGTTATGACTATTTGAACAATTATCTATTTCAAAT-GTTATGACCTTTTGTTTTGTCATAAAACA
*
146994 ATTTTTTCT
127 ATTATTTCT
147003 ATTCGAGATA
Statistics
Matches: 1266, Mismatches: 250, Indels: 109
0.78 0.15 0.07
Matches are distributed among these distances:
349 21 0.02
350 3 0.00
351 9 0.01
352 97 0.08
353 50 0.04
354 26 0.02
355 7 0.01
356 142 0.11
357 8 0.01
358 48 0.04
359 41 0.03
360 112 0.09
361 351 0.28
362 249 0.20
363 94 0.07
364 6 0.00
365 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (359 bp):
ATATTCAAAAATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCAAATAGT
TATGACTATTTGAACAATTATCTATTTCAAATGTTATGACCTTTTGTTTTGTCATAAAACAATTA
TTTCTGTTCATACAAGCTTATTCGAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATA
AGTAAAGAGATTTAAAAAATAAATATGTTTATCAAACAAATTCAAATAGTTATGACTATTTGAAC
AATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTAATAAAACAATTGTTTCTATTCATCTA
AGCTTATTTGAAATAAAATAATACTAATTTATTA
Found at i:146492 original size:542 final size:535
Alignment explanation
Indices: 145073--147006 Score: 1742
Period size: 542 Copynumber: 3.6 Consensus size: 535
145063 TATATTAATT
* * * * **
145073 ATATT-AAAAATTAATAAG----AGATTTAAAAAATGAATTTGGTTACCGAACCAGTTCAAATAG
1 ATATTCAAAAATTAATAAGTAAAAGATTT-AAAAATAAATCTGTTTACCAAATAAGTTCAAATAG
* * * * * *
145133 TTATGACTATTTGAACAATT-TTATACTTCAA-ATCATTATAACCTTTTGTTATGTCATAAAAAA
65 TTATGACTATTTGAGCAATTATT-TATTTCAACAT--TTATGACTTTTTGTTTTGTCATAAAACA
* * * * *
145196 ATTATTTCTTTTCATACAAGC-TTATTCAAAATAAAACAACACTAATCTAA-TAATATTCCAAAA
127 ATTATTTCTGTTCATACAAGCTTTATTCGAAATAAAATAATACTAAT-TAATTAATATTTCAAAA
* ** * * * * *
145259 ATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTACCGAACTAA-TTCAAATAGTTAAGACTA
191 ATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACC-AACTAAGTTCAAATAATCATGAATA
* * *
145323 TATGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAA
255 TTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTT-TCAA
* * *
145387 TTCATACT-AGCTTATTTGAAATAAATTAA-AATGAATTTATTAATATTTCAAAAAATAATAAGT
319 TTCATA-TAAGCTTATTTGAAATAAA-TAATACT-AATTTATTAATATTCCAAAAATTAATAA-T
* * * * *
145450 AAGAGACTTAAAAAATAATTTTGTTTACCTAACCAGTTCAAAA-AATT-ATACTA-TTGAACAAT
380 AAGAGAATTAAAAAATGA-TTTGTTTA-TTAACAAGTT-AAAATAATTAAGACTATTTGAACAAT
* * * * * *
145512 TATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTT-TGTTCATATAAG
442 TATCTATTTCAAAT-ACTATAACCTTTTGTTTTGTCATA-AA-AAATTTTTTCTGTTCATCTAAG
* * * *
145576 TTTA-TTCAGAATAAAGTAATACTAATCTATTA
504 CTTATTTCA-AATAAAATAATACAAATTTATTA
* * * * *
145608 ATATTTCAAAAATTAATAAGT----GGTTTAGACAATAAATCTATGTATCAAACT-AGTTCAAAT
1 ATA-TTCAAAAATTAATAAGTAAAAGATTTA-AAAATAAATCTGTTTACCAAA-TAAGTTCAAAT
* * **
145668 AGTTATGATTATTTGAGCAATTATTTATTTCAGATCA-TTATGACTTGTTGTTTTGT--TGTAAC
63 AGTTATGACTATTTGAGCAATTATTTATTTCA-A-CATTTATGACTTTTTGTTTTGTCATAAAAC
* * * * * ** *
145730 AATTGTTTCTATTCATACAAGCTTT-TT-GCATTAAAATAATACTAATTTATTAATATTTTGACA
126 AATTATTTCTGTTCATACAAGCTTTATTCGAAATAAAATAATACTAATTAATTAATATTTCAAAA
* * * *
145793 ATTAGTAAGTAAAAAATTT---TAA-AAATATGTTTACCACACT-AGATCAAATAATCATG-ATA
191 ATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCA-ACTAAGTTCAAATAATCATGAAT-
* * * * * *
145852 ATTTGAATAATTTATCTATTTCAAATTGTTATAACCTTTTGATTTGTCATAAAAGAGTTGTTTTA
254 ATTTGAATAA-TTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCA
* ** *
145917 GTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAATAA
318 ATTCATATAAGCTTATTTGAAAT-AAATAATACTAATTTATTAATATTCCAAAAATTAATAAT-A
* * *
145982 AGAGATTTAAAAAATGACTTTGTTTATTAAACAAATTAAAATAATTAAGACTATTTGAATAATTA
381 AGAGAATTAAAAAATGA-TTTGTTTATT-AACAAGTTAAAATAATTAAGACTATTTGAACAATTA
* * *
146047 TCTATTTGAAATAGCTATAACCTTTTGTTTTGTAATGAAAGAATTTTTTCTGTTCATCTAAGCTT
444 TCTATTTCAAATA-CTATAACCTTTTGTTTTGTCAT-AAAAAATTTTTTCTGTTCATCTAAGCTT
*
146112 ATTTTAAATAAAATAATACAAATTTATTA
507 ATTTCAAATAAAATAATACAAATTTATTA
* * *
146141 ATATT-AAGACAGTTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCTAATC
1 ATATTCAA-A-AATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCAAATA
* * *
146205 GTTATGGCTATTTGAGCAATTATTTATTTCAACATGTTATGATTTTTTGTTTTGTCATAAAATAA
64 GTTATGACTATTTGAGCAATTATTTATTTCAACAT-TTATGACTTTTTGTTTTGTCATAAAACAA
* ** ** *
146270 TTATTTCTGTTCATACAAG-TTTATTCGAATTAAAATAATGTTAATTAATTAATATTTTGACAAT
128 TTATTTCTGTTCATACAAGCTTTATTCGAAATAAAATAATACTAATTAATTAATATTTCAAAAAT
* * *
146334 TAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAATAAGTTCAAATAATCATTAATATTT
193 TAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAACTAAGTTCAAATAATCATGAATATTT
* * * * * *
146399 CAATAATTATCTATTTCAAATCATTATGACCTTTTCTTTTCTAATAAAACACTTGTTTCAATTCA
258 GAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCA
* * *
146464 TATAAGCTTATTTGAAGTAAGATAATACTAATTTATTAATATTCCAAAAATTAATGAGTGAGAGA
323 TATAAGCTTATTTGAAATAA-ATAATACTAATTTATTAATATTCCAAAAATTAAT-AATAAGAGA
* * * * * *
146529 ATTAAAAAAAGATTATGTTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
386 ATTAAAAAATGATT-TGTTTAT-TAACAAGTTAAAATAATTAAGACTATTTGAACAATTATCTAT
* **
146594 TTCAAA-ACATTATGACCTTTTGTTTTGTCATAAAACAATTAGCTTC-GTTCATGC-AAGCTTAT
449 TTCAAATAC--TATAACCTTTTGTTTTGTCATAAAA-AATT-TTTTCTGTTCAT-CTAAGCTTAT
* **
146656 TTCGAATAAAATAATTTAAATTTATTA
509 TTCAAATAAAATAATACAAATTTATTA
* * * * ** *
146683 ATATTCCATAAATTAATAAGTAAAA-TTTTAAAAAATAAATATGTTTTCTGAACACA-TTCAAAT
1 ATATT-CAAAAATTAATAAGTAAAAGATTT-AAAAATAAATCTGTTTACCAAATA-AGTTCAAAT
* * * * *
146746 AGTTATGACTATTTGAAG-AAATATCTATTTCAA-ATCATTATGACCTTTTATTTTGTCATAAAC
63 AGTTATGACTATTTG-AGCAATTATTTATTTCAACAT--TTATGACTTTTTGTTTTGTCATAAAA
* * * * * * *
146809 CAATTATTTCTGGTCATAAAAGTTTTTTTCGAAATAAAATAGTACTAATTTATTAAAATTTCAAA
125 CAATTATTTCTGTTCATACAAGCTTTATTCGAAATAAAATAATACTAATTAATTAATATTTCAAA
* * * * *
146874 AATTAATAAGTCAAAGATTTAAAAAAATAAATCTGTTTACCAAGC-AAGTTCAAATAGTTATGAC
190 AATTAATAAGTAAAAGATTT-AAAAAATAAATATGTTTACCAA-CTAAGTTCAAATAATCATGAA
* * * * * *
146938 TATTTGAATAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTATCATAAAACGATTTTTTCT
253 TATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCA
147003 ATTC
318 ATTC
147007 GAGATAGTAA
Statistics
Matches: 1137, Mismatches: 197, Indels: 121
0.78 0.14 0.08
Matches are distributed among these distances:
529 3 0.00
530 40 0.04
531 128 0.11
532 23 0.02
533 89 0.08
534 43 0.04
535 30 0.03
536 76 0.07
537 88 0.08
538 27 0.02
539 49 0.04
540 2 0.00
541 13 0.01
542 333 0.29
543 97 0.09
544 96 0.08
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (535 bp):
ATATTCAAAAATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAATAAGTTCAAATAGT
TATGACTATTTGAGCAATTATTTATTTCAACATTTATGACTTTTTGTTTTGTCATAAAACAATTA
TTTCTGTTCATACAAGCTTTATTCGAAATAAAATAATACTAATTAATTAATATTTCAAAAATTAA
TAAGTAAAAGATTTAAAAAATAAATATGTTTACCAACTAAGTTCAAATAATCATGAATATTTGAA
TAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATAT
AAGCTTATTTGAAATAAATAATACTAATTTATTAATATTCCAAAAATTAATAATAAGAGAATTAA
AAAATGATTTGTTTATTAACAAGTTAAAATAATTAAGACTATTTGAACAATTATCTATTTCAAAT
ACTATAACCTTTTGTTTTGTCATAAAAAATTTTTTCTGTTCATCTAAGCTTATTTCAAATAAAAT
AATACAAATTTATTA
Found at i:147599 original size:21 final size:20
Alignment explanation
Indices: 147569--147622 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
147559 TTATTATTTA
147569 ATAA-AGATTAAAATATTAATT
1 ATAATAGATTAAAATA--AATT
*
147590 ATAAT-TATT-AAATAAATT
1 ATAATAGATTAAAATAAATT
147608 ATAATAGATTAAAAT
1 ATAATAGATTAAAAT
147623 TAGTATTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 9 0.32
19 3 0.11
20 9 0.32
21 7 0.25
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (20 bp):
ATAATAGATTAAAATAAATT
Found at i:147980 original size:16 final size:16
Alignment explanation
Indices: 147917--147984 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
147907 ATTATTAAAA
* *
147917 TTAAATAAAATAATAT
1 TTAAATAAATTATTAT
*
147933 TTAAAATAAATAATT-T
1 TT-AAATAAATTATTAT
*
147949 ATTAATCATGAATTATTAT
1 -TTAA--ATAAATTATTAT
147968 TTAAATAAATTATTAT
1 TTAAATAAATTATTAT
147984 T
1 T
147985 ATCTTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
16 17 0.41
17 11 0.27
18 12 0.29
19 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (16 bp):
TTAAATAAATTATTAT
Found at i:148058 original size:11 final size:11
Alignment explanation
Indices: 148029--148064 Score: 58
Period size: 10 Copynumber: 3.5 Consensus size: 11
148019 TTCTTATTAT
148029 ATATTA-AATA
1 ATATTATAATA
148039 ATATT-TAATA
1 ATATTATAATA
148049 ATATTATAATA
1 ATATTATAATA
148060 ATATT
1 ATATT
148065 GAATTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATTATAATA
Found at i:148110 original size:21 final size:21
Alignment explanation
Indices: 148060--148114 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
148050 TATTATAATA
148060 ATATTGAATTATAATCATGATT
1 ATATT-AATTATAATCATGATT
*
148082 ATAATAATT-TAAT-ATGATT
1 ATATTAATTATAATCATGATT
148101 ATGTATTAATTATA
1 A--TATTAATTATA
148115 CATATTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 7 0.25
20 4 0.14
21 11 0.39
22 6 0.21
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (21 bp):
ATATTAATTATAATCATGATT
Found at i:148579 original size:15 final size:14
Alignment explanation
Indices: 148543--148585 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
148533 TAAATTTTAC
148543 AATTTAATATTACTT
1 AATTTAATATTA-TT
*
148558 AAATTAATATTATT
1 AATTTAATATTATT
148572 ATATTTAA-ATTATT
1 A-ATTTAATATTATT
148586 GCTTAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (14 bp):
AATTTAATATTATT
Found at i:149359 original size:181 final size:179
Alignment explanation
Indices: 148806--149672 Score: 558
Period size: 181 Copynumber: 4.9 Consensus size: 179
148796 TGTAATTCAA
* * * * * * * *
148806 AAACAAGTGTTTTGTGACAAAAAAAAAAAGGTTATAATGATTTAAAATAGATTATTGTTCAAATA
1 AAACAATTGTTTTATGAC--AAAACAAAAGATCATAATGATTTGAAATAGATAATTATTCAAATA
* * * *
148871 GTCATAACTATTTGCAA-TGG-TCAGGTCAATAGATTCATTTTTTAAAT-TTGTTACTTATTAAT
64 GTCATAACTATTTG-AACTGGTTCA-ATAAATAAATTTA-TTTTTAAATCTT-TTACTTATTAAT
* * * * * *
148933 TGTT-AGAATATTAATAAATTAGAATTACTTTATTCCGAATAAGAC-TATATCAATAG
125 T-TTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAG-CTTGTATGAACAG
* * * ** * * * *
148989 AAATAATTGTTTTATGACAAAAC-AAAGTGTTATAACAATATGAAATAAATAATTGTT-AAATTG
1 AAACAATTGTTTTATGACAAAACAAAAG-ATCATAATGATTTGAAATAGATAATTATTCAAATAG
* * * *** * *
149052 TTATAACTAATTGAACTAGTTTGGTAAACAAATTTTATTTTTTAAATC----GCTTATTAATTTT
65 TCATAACTATTTGAACTGGTTCAATAAATAAA-TTTA-TTTTTAAATCTTTTACTTATTAA-TTT
* * * * ** * * *
149113 TAAAATATTAATAAATTAATATTATTTTA-TTCTAAACAAAATTATATTAACAA
127 TGAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAACAG
* * *
149166 AAACATTTGTTTTATGACAAAATAAAAGAAT-ATAATGATTTGAAATAGATAATTATTCATATAG
1 AAACAATTGTTTTATGACAAAACAAAAG-ATCATAATGATTTGAAATAGATAATTATTCAAATAG
* * * * *
149230 CCTTAACTATTTGAACTGGTTCAATAAATAAATTTATTTTTCAAATCTGTTAATTATTAATTTTC
65 TCATAACTATTTGAACTGGTTCAATAAATAAATTTATTTTT-AAATCTTTTACTTATTAATTTTG
* * * *
149295 ATAATATTATTAGATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAACAT
129 A-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAG
* * * * * * *
149347 AAATAATTGTTTTATGACAAAACAAAAGGTTATAATGACTTGAAATATATAATTCTTTAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTATTCAAATAGT
* * * * * * **
149412 CATGATTATTTAAACTAGTTCAAT-AA-ACA--GA----T-AATCTCCTACTTATTAATTTTTGA
66 CATAACTATTTGAACTGGTTCAATAAATAAATTTATTTTTAAATCTTTTACTTATTAA-TTTTGA
* * * ** *
149468 AATATTAATAAACTAGTATTATTTTA-TTCTAATTAGGCTTGTATGATGAA
130 AATATTAATAAATTAGTATTATTTTATTTCGAA-TAAGCTTGTATGAACAG
* * * * *
149518 AAACAATTGTTTTATGACAAAACAAAAGTTCAAAATGATTTGAAATAGATAATTGTTCAAATGGC
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTATTCAAATAGT
* * *** *
149583 CATAACTATTTGAACTGATTCAATAAA-ATGATTTATGTTTTAAATCTCCAACTTCTTAATTTTT
66 CATAACTATTTGAACTGGTTCAATAAATA-AATTTAT-TTTTAAATCTTTTACTTATTAA-TTTT
* *
149647 GAAATATTAATAAAGTAATATTATTT
128 GAAATATTAATAAATTAGTATTATTT
149673 CTTAATTTTT
Statistics
Matches: 535, Mismatches: 118, Indels: 64
0.75 0.16 0.09
Matches are distributed among these distances:
170 5 0.01
171 123 0.23
172 8 0.01
173 2 0.00
175 1 0.00
176 7 0.01
177 96 0.18
178 35 0.07
179 4 0.01
180 37 0.07
181 199 0.37
182 3 0.01
183 15 0.03
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (179 bp):
AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTATTCAAATAGT
CATAACTATTTGAACTGGTTCAATAAATAAATTTATTTTTAAATCTTTTACTTATTAATTTTGAA
ATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACAG
Found at i:149682 original size:36 final size:36
Alignment explanation
Indices: 149635--149708 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
149625 AATCTCCAAC
149635 TTCTTAATTTTTGAAATATTAATAAAGTAATATTAT
1 TTCTTAATTTTTGAAATATTAATAAAGTAATATTAT
*
149671 TTCTTAATTTTTGAAATATTGATAAAGTAATATTAT
1 TTCTTAATTTTTGAAATATTAATAAAGTAATATTAT
149707 TT
1 TT
149709 TATTTTGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (36 bp):
TTCTTAATTTTTGAAATATTAATAAAGTAATATTAT
Found at i:150049 original size:394 final size:387
Alignment explanation
Indices: 149313--150049 Score: 866
Period size: 394 Copynumber: 1.9 Consensus size: 387
149303 ATTAGATTAG
* *
149313 TATTATTTTCTTTCGAATAAGCTTGTATGAACATAAATAATTGTTTTATGACAAAACAAAAGGTT
1 TATTATTTTATTTCGAATAAGCTTGTATGAACATAAATAATTGTTTTATGACAAAACAAAAGGTC
* * *
149378 ATAATGACTTGAAATATATAATTCTTTAAATAGTCATGATTATTTAAACTAGTTCAATAAACAGA
66 ATAACGACTTGAAATATATAATTCTTTAAATAGTCATAACTATTTAAACTAGTTCAATAAACAGA
* * ** *
149443 TAATCTCCTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTATTCTAATTAGGCTT
131 TAATCTCCTACTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTCGAATTAAACAT
* * * *
149508 GTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCAAAATGATTTGAAATAGATAATTG
196 GTATGA-GAAAAACAACTATTTTATGACAAAACAAAAGGTCAAAATGATTTGAAATAGATAATTA
* * * * *
149573 TTCAAATGGCCATAACTATTTGAACTGATTCAATAAAATGATTTATGTTTTAAATCTCCAACTTC
260 CTCAAATAGCCATAACTATTTGAACTGATTCAACAAAATCATTTATGTTTTAAATCTCCAACTTA
149638 TTAATTTTTGAAATATTAATAAAGTAATATTATTTCTTAATTTTTGAAATATTGATAAAGTAA
325 TTAATTTTTGAAATATTAATAAAGTAATATTATTTCTTAATTTTTGAAATATTGATAAAGTAA
* * * *
149701 TATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAATAATTGTTTTATGATAAAACAAAAGGT
1 TATTATTTTATTTCGAATAAGCTTGTATGAACAT-AAATAATTGTTTTATGACAAAACAAAAGGT
* * * * ***
149765 CATAACGATTTTAAA-ATGATAATTGTTTAAATAGTCATAACTATTTAAACTTGTTTGGTAAACT
65 CATAACGACTTGAAATAT-ATAATTCTTTAAATAGTCATAACTATTTAAACTAGTTCAATAAAC-
* *
149829 A-ATTTTTTTTAAT-TCCTTGCTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATT
128 AGA-------TAATCTCC-TACTTATTAA-TTTTTGAAATATTAATAAAATAGTATTATTTTA-T
* * *
149891 TCGAA-TAAACATGTATGA-ACTAAACAACTATTTTATGACTAAACAAAAGGTCAGAATGATTTG
183 TCGAATTAAACATGTATGAGA-AAAACAACTATTTTATGACAAAACAAAAGGTCAAAATGATTTG
* * *
149954 AAATAGATAATTACT-ATAATAGTCTTAACTATTTGAACT-AGTTCAAC-AAATACATTTATTTT
247 AAATAGATAATTACTCA-AATAGCCATAACTATTTGAACTGA-TTCAACAAAAT-CATTTATGTT
**
150016 TTAAATCTCTTACTTATTAATTTTT-AGAATATTA
309 TTAAATCTCCAACTTATTAATTTTTGA-AATATTA
150050 TTAGTTTAGC
Statistics
Matches: 291, Mismatches: 40, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
387 4 0.01
388 106 0.36
389 1 0.00
393 8 0.03
394 114 0.39
395 47 0.16
396 11 0.04
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (387 bp):
TATTATTTTATTTCGAATAAGCTTGTATGAACATAAATAATTGTTTTATGACAAAACAAAAGGTC
ATAACGACTTGAAATATATAATTCTTTAAATAGTCATAACTATTTAAACTAGTTCAATAAACAGA
TAATCTCCTACTTATTAATTTTTGAAATATTAATAAAATAGTATTATTTTATTCGAATTAAACAT
GTATGAGAAAAACAACTATTTTATGACAAAACAAAAGGTCAAAATGATTTGAAATAGATAATTAC
TCAAATAGCCATAACTATTTGAACTGATTCAACAAAATCATTTATGTTTTAAATCTCCAACTTAT
TAATTTTTGAAATATTAATAAAGTAATATTATTTCTTAATTTTTGAAATATTGATAAAGTAA
Found at i:150145 original size:180 final size:178
Alignment explanation
Indices: 149674--151066 Score: 1107
Period size: 180 Copynumber: 7.8 Consensus size: 178
149664 ATATTATTTC
* * * *
149674 TTAATTTTT-GAAATATTGA-TAAAGTAATATTATTTTATTTTGGATAAGCTTT-TATGAA-ATG
1 TTAATTTTTAG-AATATT-ATTAAATTAGTATTATTTTATTTCGAATAAG-TTTATATGAATA-G
* * * * *
149735 AAATAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTAAA-ATGATAATTGTTTAAATAG
62 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-GATAA-T-TATAAATAG
* * *** *
149799 TCATAACTATTTAAACTTGTTTGGTAAACTA-A-TT-TTTTTT-AATTCCTTGCTTA
124 TCATAACTATTTGAACTAGTTCAATAAAC-AGATTTATTTTTTAAATT-CTTACTTA
* * * * *** *
149852 TTAATTTTTTGAATGTTAATAAAATAGTATTATTTTATTTCGAATAAACATGTATGAACT--AAA
1 TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTCGAATAAGTTTATATGAA-TAGAAA
* * * * *
149915 CAACTATTTTATGACTAAACAAAAGGTCAGAATGATTTGAAATAGATAATTACTATAATAGTCTT
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA-TA-AATAGTCAT
* * *
149980 AACTATTTGAACTAGTTCAACAAATACATTTATTTTTTAAATCTCTTACTTA
128 AACTATTTGAACTAGTTCAATAAACAGATTTATTTTTTAAAT-TCTTACTTA
** * ** * * *
150032 TTAATTTTTAGAATATTATTAGTTTAGCAAAATTTTA-CTCTAAATAAGTTTATATGGATAGAAA
1 TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTC-GAATAAGTTTATATGAATAGAAA
* ** *
150096 CAATTGTTTTATGACAAAAC-AAAGATCATACCGATTT-AAGATAGATAATTATTCAAATAGTTA
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA-ATAGATAATTA-T-AAATAGTCA
* * * * *
150159 TAACTATTTGAATTGGTTCGATAAACAGATATAGTTTTTAAA-TC-T-CTTA
127 TAACTATTTGAACTAGTTCAATAAACAGATTTATTTTTTAAATTCTTACTTA
* * * * * *
150208 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAAC
1 TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTCGAATAAGTTTATATGAATAGAAAC
* * *
150273 AATTGTTTTATTACAAAAC-AAAGGATGATAA-GATTTGAAATAAAATAATTATTTAAATAGTCA
66 AATTGTTTTATGACAAAACAAAAGG-TCATAATGATTTGAAAT-AGATAATTA--TAAATAGTCA
* * * * *
150336 TAATTATTTGAACTCA-CTCGATAAATA-ATTTTATTTTTTAAATATTTTACTTA
127 TAACTATTTGAACT-AGTTCAATAAACAGA-TTTATTTTTTAAAT-TCTTACTTA
* * *
150389 TTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTT-TATGAATAGAAA
1 TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTCGAATAAG-TTTATATGAATAGAAA
* * *
150453 CAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATGGTCAT
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT-AT-AAATAGTCAT
* * * * * *
150518 AATTATTTTGAACGT-GTCCAA-AAACAAATTTATTTTATATATTTTTACTTA
128 AACTA-TTTGAAC-TAGTTCAATAAACAGATTTATTTTTTAAATTCTTACTTA
* * * * * *
150569 TTAATCTTTGGAATATTAGTAAATTTA-TATTATTTTATTT-GAAATAAGCTTGTATGAACAGAA
1 TTAATTTTTAGAATATTATTAAA-TTAGTATTATTTTATTTCG-AATAAGTTTATATGAATAGAA
* * ** *
150632 ACAA-TGTTTTATGGCAAAACAAAAGTTCATAACAATTTGAAATAGATAATTGTCCAAATAGTCA
64 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTAT--AAATAGTCA
* *** * *
150696 TAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTTACTTG
127 TAACTATTTGAACTAGTTCAATAAACAGATTTATTTTTTAAAT-TCTTACTTA
* * * * ** *
150749 TTAATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTAG-TA
1 TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTCGAATAAGTTTATATGAA-TAGAAA
* * * *
150813 TAATTGTTTTATGACGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAGATAGTTAT
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTA--TAAATAGTCAT
* * * * *
150878 TACTATTTGAACTTGTTCAGTAAACATATTTATTTTTTTAAATATTTTACTTA
128 AACTATTTGAACTAGTTCAATAAACAGATTTA-TTTTTTAAAT-TCTTACTTA
* * * * * * * * * *
150931 TTAATTGTT-GAAATATTAATAAATTAATATTATTTTAATCCTAATAAGCTAATATGAACAAAAA
1 TTAATTTTTAG-AATATTATTAAATTAGTATTATTTTATTTCGAATAAGTTTATATGAATAGAAA
* * * * *
150995 TAATTGTTTTATGACAAAACAAAATGTCATAATGATTTGAAATAAATAATTGTTCTAATAGTCAT
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATT-AT-AAATAGTCAT
151060 AACTATT
128 AACTATT
151067 CAAAATTATT
Statistics
Matches: 985, Mismatches: 174, Indels: 108
0.78 0.14 0.09
Matches are distributed among these distances:
175 1 0.00
176 87 0.09
177 128 0.13
178 61 0.06
179 92 0.09
180 232 0.24
181 228 0.23
182 154 0.16
183 2 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (178 bp):
TTAATTTTTAGAATATTATTAAATTAGTATTATTTTATTTCGAATAAGTTTATATGAATAGAAAC
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATAAATAGTCATAAC
TATTTGAACTAGTTCAATAAACAGATTTATTTTTTAAATTCTTACTTA
Found at i:150421 original size:181 final size:180
Alignment explanation
Indices: 149674--151066 Score: 1278
Period size: 181 Copynumber: 7.8 Consensus size: 180
149664 ATATTATTTC
* * * * *
149674 TTAATTTTTGAAATATTGATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAA
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATA-GAAA
* * * * *
149738 TAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTAAA-ATGATAATTGTTTAAATAGTCA
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-GATAATTATTTAAATAGTCA
* * * * *
149802 TAACTATTTAAACTTGTTTGGTAAACTAA-TT-TTTTTT-AAT-TCCTTGCTTA
129 TAACTATTTGAACTTGTTCGATAAA-TAATTTATTTTTTAAATAT-TTTACTTA
* * * * * *
149852 TTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATTTCGAATAAACATGTATGAACT--AA
1 TTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAA-TAGAA
* * * * *
149914 ACAACTATTTTATGACTAAACAAAAGGTCAGAATGATTTGAAATAGATAATTA-CTATAATAGTC
64 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTA-AATAGTC
* * * * * *
149978 TTAACTATTTGAACTAGTTCAACAAATACATTTATTTTTTAAATCTCTTACTTA
128 ATAACTATTTGAACTTGTTCGATAAATA-ATTTATTTTTTAAATATTTTACTTA
* ** * ** * * * * *
150032 TTAATTTTT-AGAATATTATTAGTTTAGCAAAATTTTACTCTAAATAAGTTTATATGGATAGAAA
1 TTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATAGAAA
* ** * *
150096 CAATTGTTTTATGACAAAAC-AAAGATCATACCGATTT-AAGATAGATAATTATTCAAATAGTTA
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA-ATAGATAATTATTTAAATAGTCA
* * * *
150159 TAACTATTTGAA-TTGGTTCGATAAACAGATATAGTTTTT-AA-A-TCT-CTTA
129 TAACTATTTGAACTT-GTTCGATAAATA-ATTTATTTTTTAAATATTTTACTTA
** ** *
150208 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAAC
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATAGAAAC
* * *
150273 AATTGTTTTATTACAAAAC-AAAGGATGATAA-GATTTGAAATAAAATAATTATTTAAATAGTCA
66 AATTGTTTTATGACAAAACAAAAGG-TCATAATGATTTGAAAT-AGATAATTATTTAAATAGTCA
* ***
150336 TAATTATTTGAACTCACTCGATAAATAATTTTATTTTTTAAATATTTTACTTA
129 TAACTATTTGAACTTGTTCGATAAATAA-TTTATTTTTTAAATATTTTACTTA
* * * *
150389 TTAATTTTTAAAATTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAAC
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATAGAAAC
* * * *
150454 AATTGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATGGTCATA
66 AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCATA
* * * * * * *
150519 ATTATTTTGAACGTG-TCCAAAAACAAATTTATTTTATATAT-TTTTACTTA
131 ACTA-TTTGAACTTGTTCGATAAA-TAATTTATTTTTTAAATATTTTACTTA
* * * * *
150569 TTAATCTTTGGAATATTAGTAAATTTA-TATTATTTTA-TTTGAAATAAGCTTGTATGAACAGAA
1 TTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTATATGAATAGAA
* * ** * **
150632 ACAA-TGTTTTATGGCAAAACAAAAGTTCATAACAATTTGAAATAGATAATTGTCCAAATAGTCA
64 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCA
* * * * *
150696 TAACTATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTTACTTG
129 TAACTATTTGAACTTGTTCGATAAATA-ATTTATTTTTTAAATATTTTACTTA
* * * * * *
150749 TTAATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTAG-TA
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAA-TAGAAA
* * * *
150813 TAATTGTTTTATGACGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAGATAGTTAT
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCAT
* *
150878 TACTATTTGAACTTGTTC-AGTAAACATATTTATTTTTTTAAATATTTTACTTA
130 AACTATTTGAACTTGTTCGA-TAAATA-ATTTA-TTTTTTAAATATTTTACTTA
* * ** * * *
150931 TTAATTGTTGAAATATTAATAAATTAATATTATTTTAATCCT-AATAAGCTAATATGAACAAAAA
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTTGAATAAGCTTATATGAATAGAAA
* * * *
150995 TAATTGTTTTATGACAAAACAAAATGTCATAATGATTTGAAATAAATAATTGTTCT-AATAGTCA
65 CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATT-TAAATAGTCA
151059 TAACTATT
129 TAACTATT
151067 CAAAATTATT
Statistics
Matches: 982, Mismatches: 188, Indels: 86
0.78 0.15 0.07
Matches are distributed among these distances:
176 88 0.09
177 125 0.13
178 58 0.06
179 105 0.11
180 219 0.22
181 234 0.24
182 150 0.15
183 3 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (180 bp):
TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAATAGAAAC
AATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCATA
ACTATTTGAACTTGTTCGATAAATAATTTATTTTTTAAATATTTTACTTA
Found at i:150692 original size:537 final size:539
Alignment explanation
Indices: 149674--151066 Score: 1513
Period size: 537 Copynumber: 2.6 Consensus size: 539
149664 ATATTATTTC
* * * *
149674 TTAATTTTTGAAATATTGATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAA
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAA-CTTTTATGAATA-GAAA
* * * *
149738 TAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTAAA-ATGATAATTGTTTAAATAGTCA
64 TAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAGATAATTATTTAAATAGTCA
* * * * * *
149802 TAACTATTTAAACTTGTTTGGTAAACTAA--TT-TTTTTT-AAT-TCCTTGCTTATTAATTTTTT
129 TAACTATTTGAACTTGTTCGATAAA-TAATTTTATTTTTTAAATAT-TTTACTTATTAATTTTTA
* * * * * * * *
149862 GAATGTTAATAAAATAGTATTATTTTATTTCGAATAAACATGTATGAACT-AAACAACTATTTTA
192 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAA-TAAAACAATTGTTTTA
* * ** *
149926 TGACTAAACAAAAGGTCAGAATGATTTGAAATAGATAATTACT-ATAATAGTCTTAACTA-TTTG
256 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCA-AATAGTCATAACTATTTTG
* * * * * * *
149989 AACTAGTTCAACAAATACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAG
320 AACTAGTCCAACAAACAAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTATAAA
* * *
150054 TTTAGCAAAATTTTACTCTAAATAAGTTTATATGGATAGAAACAATTGTTTTATGACAAAACAAA
385 TTTAGCAAAATTTTACTCTAAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAA
* * * *
150119 GATCATACCGATTTAAGATAGATAATTATTCAAATAGTTATAACTATTTGAA-TTGGTTCGATAA
450 GATCATAACAATTTAAGATAGATAATTATCCAAATAGTCATAACTATTTGAACTT-GTTCGATAA
150183 ACAGATATAGTTTTTAAATCTCTTA-
514 ACAGATATAGTTTTTAAATCTCTTAT
** * *
150208 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAAC
1 TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAACTTT-TATGAATAGAAAT
* * *
150273 AATTGTTTTATTACAAAAC-AAAGGATGATAA-GATTTGAAATAAAATAATTATTTAAATAGTCA
65 AATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAAGATAATTATTTAAATAGTCA
* ***
150336 TAATTATTTGAACTCACTCGATAAATAATTTTATTTTTTAAATATTTTACTTATTAATTTTTAAA
129 TAACTATTTGAACTTGTTCGATAAATAATTTTATTTTTTAAATATTTTACTTATTAATTTTTAAA
* * *
150401 ATTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGGTTTATG
194 ATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAATA-AAACAATTGTTTTATG
* *
150466 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATGGTCATAATTATTTTGAAC
258 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTTGAAC
* * *
150531 GT-GTCCAA-AAACAAATTTATTTTATATAT-TTTTACTTATTAATCTTTGGAATATTAGTAAAT
323 -TAGTCCAACAAACAAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTA-TAAAT
* ** * * *
150593 TTA-TATTATTTTA-TTTGAAATAAGCTTGTATGAACAGAAACAA-TGTTTTATGGCAAAACAAA
386 TTAGCAAAATTTTACTCT-AAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAAC-AA
* * * *
150655 AGTTCATAACAATTTGAA-ATAGATAATTGTCCAAATAGTCATAACTATTTGAACTTGTTTGGTA
449 AGATCATAACAATTT-AAGATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTCGATA
* * *
150719 AATAGATTTATTTTTTAAATCTCTTACTT
513 AACAGATATAGTTTTTAAATCTCTTA--T
* * * * * * *
150748 GTTAATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTAG-T
1 -TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAA-CTTTTATGAA-TAGAA
* * * *
150812 ATAATTGTTTTATGACGAAACAAAAGGTCATAATGATTTGAAAT-AGATAATTATTTAGATAGTT
63 ATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAGATAATTATTTAAATAGTC
* * *
150876 ATTACTATTTGAACTTGTTC-AGTAAA-CATATTTATTTTTTTAAATATTTTACTTATTAATTGT
128 ATAACTATTTGAACTTGTTCGA-TAAATAAT-TTTA-TTTTTTAAATATTTTACTTATTAATTTT
* * * * * * * *
150939 TGAAATATTAATAAATTAATATTATTTTAATCCTAATAAGCTAATATGAACAAAAATAATTGTTT
190 TAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAA-TAAAACAATTGTTT
* * *
151004 TATGACAAAACAAAATGTCATAATGATTTGAAATAAATAATTGTTCTAATAGTCATAACTATT
254 TATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATT
151067 CAAAATTATT
Statistics
Matches: 717, Mismatches: 111, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
533 19 0.03
534 110 0.15
535 3 0.00
536 24 0.03
537 188 0.26
538 89 0.12
539 13 0.02
540 4 0.01
541 110 0.15
542 156 0.22
543 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (539 bp):
TTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAACTTTTATGAATAGAAATA
ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAGATAATTATTTAAATAGTCATA
ACTATTTGAACTTGTTCGATAAATAATTTTATTTTTTAAATATTTTACTTATTAATTTTTAAAAT
ATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTATATGAATAAAACAATTGTTTTATGACA
AAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTTGAACTAG
TCCAACAAACAAATTTATTTTATAAATCTCTTACTTATTAATCTTTAGAATATTATAAATTTAGC
AAAATTTTACTCTAAATAAGCTTATATGAACAGAAACAATTGTTTTATGACAAAACAAAGATCAT
AACAATTTAAGATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTCGATAAACAGATA
TAGTTTTTAAATCTCTTAT
Found at i:151355 original size:16 final size:17
Alignment explanation
Indices: 151334--151366 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
151324 TAACAATTTG
151334 AAATAG-ATAATTGTTC
1 AAATAGCATAATTGTTC
151350 AAATAGTCATAATTGTT
1 AAATAG-CATAATTGTT
151367 TGCACTGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTGTTC
Found at i:151481 original size:181 final size:180
Alignment explanation
Indices: 151087--151739 Score: 581
Period size: 183 Copynumber: 3.6 Consensus size: 180
151077 CGGTAAATAG
* * * * * * * *
151087 ATTTGAAATAAGCTTGTATGAATAGAAAA-AATTATTTTATGACAATACAAAAGGTTATAGCAAT
1 ATTTCAAATAAACTTATATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAAT
* * * * ** ** * *
151151 TT-AAACAAGATAATTGCTT-AAATAGCCCTAATTATTTGAACTTGTTCGGTAAACAGATTCATT
65 TTGAAA-TAGATAATTG-TTCAAATAGTCATAATTATTTGAACTAGTAAGCCAAACAAATACATT
* * ***
151214 ATT-TAAATCTCTCACTTA-TAATTTTTGGAATATTAATAAATTAGAATTATGTT
128 -TTCTAAATCTCTTACGTATTAATTTTCAAAATATTAATAAATTAGAATTAT-TT
* * *
151267 A-TTCTAAATAAACTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACAAT
1 ATTTC-AAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAAT
* * *
151331 TTGAAATAGATAATTGTTCAAATAGTCATAATTGTTTGCACT-GCTCAAGCCAAA-AGATACATT
65 TTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAG-T-AAGCCAAACAAATACATT
* *
151394 TTCTAAATC-CATTACTTATTAATTTTCAAAATATTAATAAATTAGCATTACTTT
128 TTCTAAATCTC-TTACGTATTAATTTTCAAAATATTAATAAATTAGAATTA-TTT
* * * * **
151448 ATTTCGAATAAGA-TTATATGAATAGAAACAATTGTTTTTATGATAAAACAAAACGGTCATAATG
1 ATTTCAAATAA-ACTTATATGAACAAAAACAATTG-TTTTATGACAAAACAAAA-GGTCATAACA
* * * * * * * * * **
151512 ATTTGAAATAAATATTTGGTCAAACAGTTATAACTAATTGAACTAGTATGGCAAACAAATTTATT
63 ATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGTAAGCCAAACAAATACATT
* **
151577 TTTTAAATCTCTTACGTATTAATTTTTGAAATATTAATAAATTA-ATATTATTTT
128 TTCTAAATCTCTTACGTATTAATTTTCAAAATATTAATAAATTAGA-ATTA-TTT
* * * *
151631 ATTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTAATAACAATT
1 ATTTCAAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATT
* *
151696 TGAAATAGATAATTATTCAAATAGTCATAATTATTTGAAATAGT
66 TGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGT
151740 TTTGTAAACA
Statistics
Matches: 383, Mismatches: 71, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
179 12 0.03
180 98 0.26
181 105 0.27
182 45 0.12
183 121 0.32
184 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (180 bp):
ATTTCAAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATT
TGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTAGTAAGCCAAACAAATACATTTTC
TAAATCTCTTACGTATTAATTTTCAAAATATTAATAAATTAGAATTATTT
Found at i:151719 original size:16 final size:17
Alignment explanation
Indices: 151698--151730 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
151688 TAACAATTTG
151698 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
151714 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
151731 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:151738 original size:19 final size:18
Alignment explanation
Indices: 151693--151739 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
151683 GGTAATAACA
151693 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
151710 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
151728 ATTTGAAATAGT
1 ATTTGAAATAGT
151740 TTTGTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:152379 original size:23 final size:23
Alignment explanation
Indices: 152312--152386 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
152302 TATTGTAAAA
* **
152312 AGCTTGTTTAAATGCTTGGACAA
1 AGCTTGTCTAAATGCTTGGACTT
152335 AGCTTGTCTAAATGCTTGGACTT
1 AGCTTGTCTAAATGCTTGGACTT
152358 AGCTTGTCTAAATGCTTGGACTT
1 AGCTTGTCTAAATGCTTGGACTT
152381 AGCTTG
1 AGCTTG
152387 CCTCAAGTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (23 bp):
AGCTTGTCTAAATGCTTGGACTT
Found at i:153602 original size:181 final size:179
Alignment explanation
Indices: 153153--154788 Score: 1063
Period size: 181 Copynumber: 9.0 Consensus size: 179
153143 TAGATAATTG
* *
153153 TTATGACTTTTTGTTTTGTCATAAAACTATTGTTTCTATTCA-ACAAGCTTA-TTCAGATTAAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAA
** *
153216 TAATATTAATTTATTAATATTTTGATAATTAATAAGTAAA-AGATTTAAAAAATAAATATATTTA
64 TAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGA-ATTTAAAAAATAAAT-TATTTA
* * *
153280 TTGAATAAGTTCAAATAGTT-TGACTATTTGAATAATTATCTATTTCAAATCA
127 TTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
* * ** * * * * ***
153332 TTATAACCTTTTGTTTTGAAATAAAATAATTGTTT-TAGTTAATATAA-ATTATTAAAAATAAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTA-TTCATACAAGCTTATTTCGAATAAAA
* ** * * *
153395 TAATACTAATTTATTAATATTTCAAAAAGGAATGAGTAAGAGAATTAAAAAAATGAATTAGTTTA
64 TAATATTAATTTATTAATATTTCAAAAATTAATAAGTAA-AGAATTTAAAAAATAAATTA-TTTA
* * *
153460 TTAAAAAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCAACA-CA
127 TTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAA-ATCA
** *
153513 TTATGACTTTTTGTTTTGTCAAAAAGCAATTGGATCTATTCATGA-AAGCTTATTTCGAATATAA
1 TTATGACTTTTTGTTTTGTCAAAAA-CAATTGTTTCTATTCAT-ACAAGCTTATTTCGAATAAAA
* * *
153577 TAATA-TAAGTTTATTAATA-TTCAAAAAATTAATAAAT-AATAATTTAAACAATAAATTTATTT
64 TAATATTAA-TTTATTAATATTTC-AAAAATTAATAAGTAAAGAATTTAAAAAATAAA-TTATTT
* * * * * * **
153639 TTCTGAATACGTTTAAATAGTTATGACTAATTAAATAATTATCTATTTCAAATTG
126 AT-TAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
* * * * *
153694 TTATGACTATTTGTTTTGTGATAAATCAATTGTTTCTGTTCATACAAGCTTA-TTCATAATAAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAA
* * * * *
153758 TAATATTAATTTATTAAAATTTCAAAAATTAATAAAT-AA-AAGTT--AAAA-AAATCTGTTTAC
64 TAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGAATTTAAAAAATAAAT-TATTTAT
* * * * * * *
153818 CAAGCGAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCA
128 TAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
* * * * *
153870 TTATGA-TATTTTCTTTGGTCATAAAATAATTGTTTCTATTCATAAAAGTTTATTT-GAAATAAA
1 TTATGACT-TTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTTCG-AATAAA
* * **
153933 ATAATATTAATTTATTAACA-TTCTAAAAGTTAATAAGT-TGGAGATTTAAAAAATAAATCTATT
63 ATAATATTAATTTATTAATATTTC-AAAAATTAATAAGTAAAGA-ATTTAAAAAATAAAT-TATT
** * * * * *
153996 TAGCAAACAAGTTCAAATAGTCATGCCCATTTAAATTATTATCTATTTCAAATCG
125 TATTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
* * * * **
154051 TTCTGACATTTTGTTTTGTTATAAAATAATACCAATGATTTAGAATAATTGGTATTCATACAAAA
1 TTATGACTTTTTGTTTTG---T-CAA-AA-A-C-A--A-TT-G--T--TT-CTATTCATACAAGC
* * * *
154116 TTA-TTCAAAATAAAATAATACTAATTTATTACTATGTCAAAAATTAATAAG----G-ATTT-AA
49 TTATTTC-GAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGAATTTAAA
* * * * * * * *
154174 AAGTAAATGTGTTTGTCGAATCAA-TTCAAATAGTTAAGACTA-TTAGAACAATTATCTGTTTCA
113 AAATAAAT-TATTTAT-TAAACAAGTTCAAATAGTTATGACTATTTA-AATAATTATCTATTTCA
*
154237 ACTCA
175 AATCA
* * * * * * * * *
154242 TTCTAACCTTTTGTTTAGTCATAAAATAATTGTTTC-AGCTCATACATGCTAATTT-GAAATATA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTA-TTCATACAAGCTTATTTCG-AATAAA
* * * * * *
154305 ATAATACTAATTTATTAACATTTAAAAAATTAATAAG-CAAGAAATTAAAAAACATAAATCAGTT
63 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAG-AATTTAAAAA-ATAAATTA-TT
* * * * * * *
154369 TATTGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCA
125 TATTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
* * * * * *
154424 TTATGACCTTTTATTTTATCATAAAACAATTGTTTCAATGCATAAAAGCTTATTT-GAAATAAAA
1 TTATGACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCATACAAGCTTATTTCG-AATAAAA
* * * *
154488 TAATATT-ACTTCTTAATATTTCAAAAATTGATAAGT-TAGAGATTTAAAAAATAAATTAGTTTA
64 TAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGA-ATTTAAAAAATAAATTA-TTTA
* ** * * * *
154551 TCAAATTAGTTCAAATAATTA-CAGCCATTTAAATAATTCTCTATTTCAAATCA
127 TTAAACAAGTTCAAATAGTTATGA-CTATTTAAATAATTATCTATTTCAAATCA
* * * * *
154604 TTATGAAC-TTTTGTTTCGTCATAAACCAATTGTTT-T-TTTATCCACAAGCCTA-TTCGGATTA
1 TTATG-ACTTTTTGTTTTGTCA-AAAACAATTGTTTCTATTCAT--ACAAGCTTATTTC-GAATA
* * * *
154665 AAATAAAACTAATTTACTAATATTTCAAAAATTAATAAGT-AGGAGATTTAAAAAATAAATCTAT
61 AAATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGA-ATTTAAAAAATAAAT-TAT
* * * * * *
154729 TTACTGAACCAA-TTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATTA
124 TTA-TTAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
154785 TTAT
1 TTAT
154789 AACCTTCATA
Statistics
Matches: 1130, Mismatches: 245, Indels: 162
0.74 0.16 0.11
Matches are distributed among these distances:
174 1 0.00
175 51 0.05
176 121 0.11
177 10 0.01
178 13 0.01
179 78 0.07
180 174 0.15
181 379 0.34
182 155 0.14
183 3 0.00
184 3 0.00
185 3 0.00
186 2 0.00
187 3 0.00
188 3 0.00
190 4 0.00
191 61 0.05
192 10 0.01
194 2 0.00
196 4 0.00
197 48 0.04
198 2 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (179 bp):
TTATGACTTTTTGTTTTGTCAAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAATA
ATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAGAATTTAAAAAATAAATTATTTATTAA
ACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCA
Found at i:153672 original size:18 final size:18
Alignment explanation
Indices: 153651--153702 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
153641 CTGAATACGT
153651 TTAAATAGTTATGACTAA
1 TTAAATAGTTATGACTAA
* *
153669 TTAAATAATTAT--CTAT
1 TTAAATAGTTATGACTAA
*
153685 TTCAAATTGTTATGACTA
1 TT-AAATAGTTATGACTA
153703 TTTGTTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 5 0.19
17 8 0.30
18 11 0.41
19 3 0.11
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (18 bp):
TTAAATAGTTATGACTAA
Found at i:153938 original size:357 final size:361
Alignment explanation
Indices: 153153--154782 Score: 1072
Period size: 357 Copynumber: 4.5 Consensus size: 361
153143 TAGATAATTG
* * *
153153 TTATGACTTTTTGTTTTGTCATAAAACT-ATTGTTTCTATTCA-ACAAGCTTA-TTCAGATTAAA
1 TTATGACTTTTTGTTTTGTCATAAAACTAATTGTTTCTATTCATAAAAGCTTATTTGA-AATAAA
* * *
153215 ATAATATTAATTTATTAATATTTTGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTA
65 ATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTA
* * *
153280 T-TGAATAAGTTCAAATAGTT-TGACTATTTGAATAATTATCTATTTCAAATCATTATAACCT-T
130 TCTGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGA-CTAT
* *
153342 TTGTTTTGAAATAAAATAATTGTTTTAGTTAATATAAATTATTAAAAATAAAATAATACTAATTT
194 TTGTTTTGTAAT-AAATAATTGTTTTAGTTAATACAAATTATTAAAAATAAAATAATACTAATTT
* * * * **
153407 ATTAATATTTCAAAAAGGAATGAGTAAGAGAATTAAAAAAATGAATTAGTTTATTAAAAAAGTTC
258 ATTAAAATTTCAAAAAGGAATAAATAAGAGAATTAAAAAAAT--ACTAGTTTACCAAAAAAGTTC
*
153472 AAATAGTTATGACTATCTAAACAATTATCTATTTCAACACA
321 AAATAGTTATGACTATCTAAACAAATATCTATTTCAACACA
** * *
153513 TTATGACTTTTTGTTTTGTCA-AAAAGC-AATTGGATCTATTCATGAAAGCTTATTTCG-AATAT
1 TTATGACTTTTTGTTTTGTCATAAAA-CTAATTGTTTCTATTCATAAAAGCTTATTT-GAAATAA
* * * * *
153575 AATAATA-TAAGTTTATTAATATTCAAAAAATTAATAAATAATA-ATTTAAACAATAAATTTATT
64 AATAATATTAA-TTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATT
* * * * *
153638 TTTCTGAATACGTTTAAATAGTTATGACTAATTAAATAATTATCTATTTCAAATTGTTATGACTA
128 TATCTGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGACTA
* * * * * *
153703 TTTGTTTTGTGATAAATCAATTGTTTCT-GTTCATACAAGCTTATTCATAATAAAATAATATTAA
193 TTTGTTTTGTAATAAAT-AATTGTTT-TAGTTAATACAA-ATTATTAAAAATAAAATAATACTAA
** * ***
153767 TTTATTAAAATTTCAAAAATTAATAAATAA-A-AGTTAAAAAAAT-CT-GTTTACCAAGCGAGTT
255 TTTATTAAAATTTCAAAAAGGAATAAATAAGAGAATTAAAAAAATACTAGTTTACCAAAAAAGTT
* * *
153828 CAAATAGTTATGACTATTTGAACAAATATTTATTTCAA-ATCA
320 CAAATAGTTATGACTATCTAAACAAATATCTATTTCAACA-CA
* * *
153870 TTATGA-TATTTTCTTTGGTCATAAAA-TAATTGTTTCTATTCATAAAAGTTTATTTGAAATAAA
1 TTATGACT-TTTTGTTTTGTCATAAAACTAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAA
* * *** *
153933 ATAATATTAATTTATTAACATTCTAAAAGTTAATAAGTTGGAGATTTAAAAAATAAATCTATTTA
65 ATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTA
* * * * * * * *
153998 GC-AAACAAGTTCAAATAGTCATGCCCATTTAAATTATTATCTATTTCAAATCGTTCTGAC-ATT
130 TCTGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGACTA-T
* * *
154061 TTGTTTTGTTATAAAATAATACCAATGATTTAGAATAATTGGTATTCATACAAAATTATTCAAAA
194 TTGTTTTGTAAT-AAATAAT-----TG-TTT----T-A---G--TTAATAC-AAATTATTAAAAA
** * * * *
154126 TAAAATAATACTAATTTATTACTATGTC--AAA--AATTAATAAG-GATTTAAAAGTAAAT-GT-
241 TAAAATAATACTAATTTATTAAAATTTCAAAAAGGAATAAATAAGAGAATTAAAA--AAATACTA
* * ** * * * *
154184 GTTTGTCGAATCAA-TTCAAATAGTTAAGACTAT-TAGAACAATTATCTGTTTCAACTCA
304 GTTT-ACCAAAAAAGTTCAAATAGTTATGACTATCTA-AACAAATATCTATTTCAACACA
* * * * * * * * *
154242 TTCTAACCTTTTGTTTAGTCATAAAA-TAATTGTTTC-AGCTCATACATGCTAATTTGAAATATA
1 TTATGACTTTTTGTTTTGTCATAAAACTAATTGTTTCTA-TTCATAAAAGCTTATTTGAAATAAA
* * * * *
154305 ATAATACTAATTTATTAACATT-TAAAAAATTAATAAGCAAGAA-ATTAAAAAACATAAATCA-G
65 ATAATATTAATTTATTAATATTCT-AAAAATTAATAAGTAA-AAGATTTAAAAA-ATAAAT-ATA
* * * * * * * *
154367 TTTAT-TGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCATTATGAC
126 TTTATCTGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGA-
* * * * * * ** **
154431 CT-TTTATTTTATCATAAAACAATTGTTTCAATGCATA-AAAGCTTATTTGAAATAAAATAATA-
190 CTATTTGTTTTGTAAT-AAATAATTGTTTTAGTTAATACAAA--TTATTAAAAATAAAATAATAC
* * * * * * * * * * * *
154493 TTACTTCTTAATATTTCAAAAATTG-ATAAGTTAGAGATTTAAAAAATAAATTAGTTTATCAAAT
252 TAATTTATTAAAATTTCAAAAA-GGAATAAATAAGAGAATTAAAAAA-ATACTAGTTTACCAAAA
* * * * * * * *
154557 TAGTTCAAATAATTA-CAGCCATTTAAATAATTCTCTATTTCAA-ATCA
315 AAGTTCAAATAGTTATGA-CTATCTAAACAAATATCTATTTCAACA-CA
* * * * * * * *
154604 TTATGAAC-TTTTGTTTCGTCAT-AAACCAATTGTTT-T-TTTATCCACAAGCCTATTCGGATTA
1 TTATG-ACTTTTTGTTTTGTCATAAAACTAATTGTTTCTATTCAT--AAAAGCTTATTTGAAATA
* * * ** *
154665 AAATAAAACTAATTTACTAATATT-TCAAAAATTAATAAGTAGGAGATTTAAAAAATAAATCTAT
63 AAATAATATTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATATAT
* * * *
154729 TTA-CTGAACCAA-TTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAAT
127 TTATCTGAA-TAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAAT
154783 TATTATAACC
Statistics
Matches: 1003, Mismatches: 189, Indels: 155
0.74 0.14 0.12
Matches are distributed among these distances:
355 3 0.00
356 16 0.02
357 209 0.21
358 35 0.03
359 6 0.01
360 67 0.07
361 148 0.15
362 183 0.18
363 54 0.05
366 1 0.00
367 3 0.00
368 2 0.00
369 8 0.01
370 7 0.01
371 7 0.01
372 134 0.13
373 117 0.12
374 3 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (361 bp):
TTATGACTTTTTGTTTTGTCATAAAACTAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAA
TAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTAT
CTGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGACTATTT
GTTTTGTAATAAATAATTGTTTTAGTTAATACAAATTATTAAAAATAAAATAATACTAATTTATT
AAAATTTCAAAAAGGAATAAATAAGAGAATTAAAAAAATACTAGTTTACCAAAAAAGTTCAAATA
GTTATGACTATCTAAACAAATATCTATTTCAACACA
Found at i:154935 original size:11 final size:10
Alignment explanation
Indices: 154890--154939 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
154880 AGATTGAACA
154890 AATTAAATA-
1 AATTAAATAT
154899 AATTAGAATAT
1 AATTA-AATAT
* *
154910 ATTTAATTAT
1 AATTAAATAT
154920 AATTAAATATT
1 AATTAAATA-T
154931 AATTAAATA
1 AATTAAATA
154940 AACTAATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 15 0.44
11 14 0.41
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
AATTAAATAT
Found at i:155116 original size:24 final size:24
Alignment explanation
Indices: 155067--155128 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
155057 AGATTTTTAC
155067 TTAATTATTATA-T-ATTTATATAA
1 TTAA-TATTATATTAATTTATATAA
155090 TTAATATTATATTAATTTATA-ATA
1 TTAATATTATATTAATTTATATA-A
155114 TTAATAATTA-ATTAA
1 TTAAT-ATTATATTAA
155129 AAACCAATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.20
23 6 0.17
24 18 0.51
25 4 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TTAATATTATATTAATTTATATAA
Found at i:155249 original size:18 final size:18
Alignment explanation
Indices: 155218--155286 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
155208 ATAATCTTTA
**
155218 TAATAATTCTTATAATAT
1 TAATAATTAATATAATAT
155236 TAATAATTAATATAAT-T
1 TAATAATTAATATAATAT
* *
155253 TATTCAATTAAACAATAATAT
1 TAAT-AATT-AA-TATAATAT
*
155274 TAATAATTTATAT
1 TAATAATTAATAT
155287 TCTTATTGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 20 0.50
19 3 0.08
20 9 0.22
21 4 0.10
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATAATTAATATAATAT
Found at i:156676 original size:24 final size:26
Alignment explanation
Indices: 156647--156697 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
156637 AATATACATT
156647 TAGTTTTA-CTCTTAG-TTTTTCACA
1 TAGTTTTATCTCTTAGTTTTTTCACA
* *
156671 TAGTTTTATTTTTTAGTTTTTTCACA
1 TAGTTTTATCTCTTAGTTTTTTCACA
156697 T
1 T
156698 GGAATGAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 5 0.22
26 10 0.43
ACGTcount: A:0.20, C:0.12, G:0.08, T:0.61
Consensus pattern (26 bp):
TAGTTTTATCTCTTAGTTTTTTCACA
Found at i:158824 original size:22 final size:22
Alignment explanation
Indices: 158799--158842 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
158789 ATTTTTTGTC
*
158799 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
158821 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
158843 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:159240 original size:14 final size:15
Alignment explanation
Indices: 159223--159259 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
159213 TAATTATAAT
*
159223 TAATTAA-ATTCTAA
1 TAATTAATATTCCAA
159237 TAATTAATATTCCAA
1 TAATTAATATTCCAA
159252 -AATTAATA
1 TAATTAATA
159260 ATAAAAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATTAATATTCCAA
Found at i:160305 original size:17 final size:17
Alignment explanation
Indices: 160263--160315 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
160253 AAATAATTGT
160263 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
160279 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
160297 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
160314 TA
1 TA
160316 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:160306 original size:22 final size:23
Alignment explanation
Indices: 160265--160320 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
160255 ATAATTGTTA
160265 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
160286 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
160308 AAAATATAATATA
1 TAATTATAATATA
160321 AATATTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:161394 original size:19 final size:20
Alignment explanation
Indices: 161372--161420 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
161362 TATTGGTTAA
161372 AATATATTATATAATT-TA-T
1 AATATATTA-ATAATTATATT
161391 AATATAATTAATAATTATATT
1 AATAT-ATTAATAATTATATT
161412 AATA-ATTAA
1 AATATATTAA
161421 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 16 0.59
20 6 0.22
21 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATATATTAATAATTATATT
Found at i:161397 original size:12 final size:12
Alignment explanation
Indices: 161380--161417 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
161370 AAAATATATT
*
161380 ATATAATTTATA
1 ATATAATTAATA
161392 ATATAATTAATA
1 ATATAATTAATA
161404 AT-TATATTAATA
1 ATATA-ATTAATA
161416 AT
1 AT
161418 TAAAAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATAATTAATA
Found at i:161628 original size:23 final size:21
Alignment explanation
Indices: 161575--161629 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
161565 ATAATAATAA
*
161575 ATTAATTATTATTAATTTAAT
1 ATTAAATATTATTAATTTAAT
* *
161596 A-TATAGATTATTAATTATAGAT
1 ATTAAATATTATTAATT-TA-AT
161618 ATTAAATATTAT
1 ATTAAATATTAT
161630 ATATTAATCC
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
20 12 0.46
21 3 0.12
22 3 0.12
23 8 0.31
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
ATTAAATATTATTAATTTAAT
Found at i:164639 original size:23 final size:23
Alignment explanation
Indices: 164612--164661 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
164602 AATATCTATA
164612 TATTAA-ATTAATAATAATTAAT-T
1 TATTAATA-TAAT-ATAATTAATAT
*
164635 TATTATTATAATATAATTAATAT
1 TATTAATATAATATAATTAATAT
164658 TATT
1 TATT
164662 TTATTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 9 0.38
23 14 0.58
24 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTAATATAATATAATTAATAT
Found at i:164664 original size:28 final size:26
Alignment explanation
Indices: 164593--164666 Score: 69
Period size: 29 Copynumber: 2.7 Consensus size: 26
164583 CGATTAATAT
*
164593 ATAATATTTAATATCTATATATTAAATTA
1 ATAATAATTAAT-T-TAT-TATTAAATTA
164622 ATAATAATTAATTTATTATTATAATATA
1 ATAATAATTAATTTATTATTA-AAT-TA
*
164650 ATTAAT-ATTATTTTATT
1 A-TAATAATTAATTTATT
164667 GGATTAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.12
27 6 0.15
28 14 0.35
29 15 0.38
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (26 bp):
ATAATAATTAATTTATTATTAAATTA
Found at i:170128 original size:10 final size:10
Alignment explanation
Indices: 170113--170148 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
170103 CACCAAGAAG
*
170113 CAAGAGGAAA
1 CAAGAGGAAT
170123 CAAGAGGAAT
1 CAAGAGGAAT
*
170133 CAAGATGAAT
1 CAAGAGGAAT
170143 CAAGAG
1 CAAGAG
170149 AGCAAGAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.53, C:0.11, G:0.28, T:0.08
Consensus pattern (10 bp):
CAAGAGGAAT
Found at i:170766 original size:20 final size:20
Alignment explanation
Indices: 170741--170782 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
170731 CCATCTAACC
170741 TATAAAGCTAACAAAGCAAG
1 TATAAAGCTAACAAAGCAAG
170761 TATAAAGCTAACAAAGCAAG
1 TATAAAGCTAACAAAGCAAG
170781 TA
1 TA
170783 GTTCATCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (20 bp):
TATAAAGCTAACAAAGCAAG
Found at i:170853 original size:20 final size:21
Alignment explanation
Indices: 170828--170868 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
170818 ATCAATTGAG
*
170828 CACAAAAATAA-AAAATATTT
1 CACAAAAATAATAAAACATTT
*
170848 CACAAAATTAATAAAACATTT
1 CACAAAAATAATAAAACATTT
170869 AAGCATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (21 bp):
CACAAAAATAATAAAACATTT
Found at i:172133 original size:21 final size:20
Alignment explanation
Indices: 172108--172155 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
172098 TTTTCATTCA
172108 TCAAAACATCAAA-TTTCTTTT
1 TCAAAACA--AAATTTTCTTTT
*
172129 TCAAATCAAAATTTTCTTTT
1 TCAAAACAAAATTTTCTTTT
172149 TCTAAAA
1 TC-AAAA
172156 TTTCATAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 10 0.43
21 10 0.43
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.44
Consensus pattern (20 bp):
TCAAAACAAAATTTTCTTTT
Found at i:174572 original size:12 final size:12
Alignment explanation
Indices: 174555--174596 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
174545 ATAATATTTT
174555 TAATTATTAATA
1 TAATTATTAATA
174567 TAATTATTAAT-
1 TAATTATTAATA
*
174578 TATATTATAAATA
1 TA-ATTATTAATA
174591 T-ATTAT
1 TAATTAT
174597 AAATTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.26
12 19 0.70
13 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTATTAATA
Found at i:174601 original size:23 final size:24
Alignment explanation
Indices: 174557--174605 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
174547 AATATTTTTA
* *
174557 ATTATTAATATAATTATTAATTAT
1 ATTATAAATATAATTATAAATTAT
174581 ATTATAAATAT-ATTATAAATTAT
1 ATTATAAATATAATTATAAATTAT
174604 AT
1 AT
174606 AATATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTATAAATATAATTATAAATTAT
Found at i:174965 original size:14 final size:14
Alignment explanation
Indices: 174946--174975 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
174936 CTTACTGTAA
174946 ATTATAATAAATTT
1 ATTATAATAAATTT
*
174960 ATTATACTAAATTT
1 ATTATAATAAATTT
174974 AT
1 AT
174976 AATCTCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATAATAAATTT
Found at i:175528 original size:13 final size:13
Alignment explanation
Indices: 175510--175534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
175500 ATACTTTATT
175510 AATAATTAGATTA
1 AATAATTAGATTA
175523 AATAATTAGATT
1 AATAATTAGATT
175535 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:175676 original size:11 final size:11
Alignment explanation
Indices: 175660--175722 Score: 62
Period size: 11 Copynumber: 5.8 Consensus size: 11
175650 TAAAATTTAA
175660 ATATTTATATT
1 ATATTTATATT
175671 ATATTT-TAATT
1 ATATTTAT-ATT
175682 A-ATTATATATT
1 ATATT-TATATT
*
175693 ATAATTATATT
1 ATATTTATATT
175704 ATA-TTATTATT
1 ATATTTA-TATT
175715 -TATTTATA
1 ATATTTATA
175723 ACAATTATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
10 11 0.24
11 31 0.69
12 3 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTTATATT
Found at i:175692 original size:17 final size:18
Alignment explanation
Indices: 175664--175713 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 18
175654 ATTTAAATAT
175664 TTATATTATAT-TT-TAA
1 TTATATTATATATTATAA
175680 TTA-ATTATATATTATAA
1 TTATATTATATATTATAA
175697 TTATATTATATTATTAT
1 TTATATTATA-TATTAT
175714 TTATTTATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.23
16 5 0.17
17 6 0.20
18 6 0.20
19 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTATATTATATATTATAA
Found at i:175770 original size:31 final size:32
Alignment explanation
Indices: 175732--175810 Score: 85
Period size: 31 Copynumber: 2.5 Consensus size: 32
175722 AACAATTATT
* *
175732 TTAATTTTAAATTAATAAGTAAA-AGTTTTAA
1 TTAATTTTAAATTAATAAATAAATAGATTTAA
175763 TTAATTTT-AATTATATAAATAAATTAGATTTAA
1 TTAATTTTAAATTA-ATAAATAAA-TAGATTTAA
*
175796 -T-ATTTAAAATTAATA
1 TTAATTTTAAATTAATA
175811 TATATTATAG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 5 0.12
31 23 0.56
32 6 0.15
33 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (32 bp):
TTAATTTTAAATTAATAAATAAATAGATTTAA
Found at i:176032 original size:41 final size:37
Alignment explanation
Indices: 175965--176049 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 37
175955 TCATGCAAGC
* * *
175965 TTAATCATAATATAATTTATCTAATAATTATGGTTTAA
1 TTAATAATAATATAATTTATCCAATAATT-GGGTTTAA
176003 TTAATAATATATATAATTATTATCCAATAATTGGGTTTAA
1 TTAATAATA-ATATAA-T-TTATCCAATAATTGGGTTTAA
*
176043 TAAATAA
1 TTAATAA
176050 GCATATTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 8 0.20
39 6 0.15
40 14 0.35
41 12 0.30
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.45
Consensus pattern (37 bp):
TTAATAATAATATAATTTATCCAATAATTGGGTTTAA
Found at i:176534 original size:92 final size:92
Alignment explanation
Indices: 176367--176541 Score: 217
Period size: 92 Copynumber: 1.9 Consensus size: 92
176357 TTGCATGAAC
* ** * * * * *
176367 AGAACCAATTGTTTTATGACAAAACAAAATGTCATACTATTTTGAAATAGATTATTGTTTAGATA
1 AGAAACAATTGTTTTACAACAAAACAAAATGTCATACTAATTTGAAATAGATAATAGTTCAAATA
*
176432 GTCATAACTATTTCAACTTGATCGATA
66 GACATAACTATTTCAACTTGATCGATA
*
176459 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAAC-AATTTGAAATAGATAATAGTTCAAAT
1 AGAAACAATTGTTTTACAACAAAACAAAATGTCAT-ACTAATTTGAAATAGATAATAGTTCAAAT
* * *
176523 GGACATGACTATTTGAACT
65 AGACATAACTATTTCAACT
176542 GGTTCAGTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
92 67 0.97
93 2 0.03
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (92 bp):
AGAAACAATTGTTTTACAACAAAACAAAATGTCATACTAATTTGAAATAGATAATAGTTCAAATA
GACATAACTATTTCAACTTGATCGATA
Found at i:176764 original size:181 final size:180
Alignment explanation
Indices: 176460--176787 Score: 444
Period size: 181 Copynumber: 1.8 Consensus size: 180
176450 TGATCGATAA
* * * **
176460 GAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATGG
1 GAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAAACAATAGTTCAAATCA
* * *** *
176525 ACATGACTATTTGAACTGGTTCAGTAAACTAATTAATTTTTTAAATCTTCAACTTATTAATTTTT
66 ACATAACTATTTAAACTCACTCAGTAAACAAATTAATTTTTTAAATCTTCAACTTATTAA-TTTT
*
176590 AGAATGTTAATAAATTAGTATTTTTTTATTCCGAATAAACTTGTATGAATC
130 AGAATATTAATAAATTAGTATTTTTTTATTCCGAATAAACTTGTATGAATC
* *
176641 GAAACAATTGTTTTATAACAAAACAAAA-GATCATAACAATTTGAAATAAACAATTGTTCAAA-C
1 GAAACAATTGTTTTACAACAAAACAAAATG-TCATAACAATTTGAAATAAACAATAGTTCAAATC
* **
176704 AATCATAACTATTTAAACTCACTCAGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAATTT
65 AA-CATAACTATTTAAACTCACTCAGTAAACAAATTAATTTTTTAAATCTTCAACTTATTAATTT
* *
176769 TGGAATATTAATTAATTAG
129 TAGAATATTAATAAATTAG
176788 AGTTATTAAT
Statistics
Matches: 126, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
180 21 0.17
181 105 0.83
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (180 bp):
GAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAAACAATAGTTCAAATCA
ACATAACTATTTAAACTCACTCAGTAAACAAATTAATTTTTTAAATCTTCAACTTATTAATTTTA
GAATATTAATAAATTAGTATTTTTTTATTCCGAATAAACTTGTATGAATC
Found at i:177219 original size:22 final size:22
Alignment explanation
Indices: 177193--177236 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
177183 TGTATATTTA
*
177193 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
177215 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
177237 GACAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:178958 original size:18 final size:18
Alignment explanation
Indices: 178902--178970 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
178892 AACAATAAGA
*
178902 ATATAAATTATTAATATT
1 ATATTAATTATTAATATT
* *
178920 ATTTTTTAATTGAATAA-ATT
1 A--TATTAATT-ATTAATATT
178940 ATATTAATTATTAATATT
1 ATATTAATTATTAATATT
**
178958 ATAAGAATTATTA
1 ATATTAATTATTA
178971 TAAAGATTAG
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
17 4 0.10
18 22 0.55
20 10 0.25
21 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
ATATTAATTATTAATATT
Found at i:179112 original size:22 final size:25
Alignment explanation
Indices: 179060--179123 Score: 75
Period size: 24 Copynumber: 2.7 Consensus size: 25
179050 TAATTGGTTT
179060 TTAAT-TAATTATTAA-TATTATAAA
1 TTAATATAA-TATTAATTATTATAAA
179084 TTAATATAATATTAATTA-TATAAA
1 TTAATATAATATTAATTATTATAAA
*
179108 -T-ATATAATAATAATTA
1 TTAATATAATATTAATTA
179124 AGTAAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 14 0.38
23 1 0.03
24 17 0.46
25 5 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
TTAATATAATATTAATTATTATAAA
Found at i:179129 original size:22 final size:22
Alignment explanation
Indices: 179078--179123 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
179068 TTATTAATAT
*
179078 TATAAATTAATATAATATTAATTA
1 TATAAA-T-ATATAATAATAATTA
179102 TATAAATATATAATAATAATTA
1 TATAAATATATAATAATAATTA
179124 AGTAAAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.67
23 1 0.05
24 6 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAATATATAATAATAATTA
Found at i:179268 original size:11 final size:10
Alignment explanation
Indices: 179252--179301 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
179242 ATTATTAGTT
179252 TATTTAATTAA
1 TATTTAATT-A
179263 TATTTAATTA
1 TATTTAATTA
* *
179273 TAATTAAATA
1 TATTTAATTA
179283 TATTCTAATT-
1 TATT-TAATTA
179293 TATTTAATT
1 TATTTAATT
179302 TTTTAAATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 16 0.47
11 13 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (10 bp):
TATTTAATTA
Found at i:179555 original size:181 final size:182
Alignment explanation
Indices: 179294--179727 Score: 443
Period size: 182 Copynumber: 2.4 Consensus size: 182
179284 ATTCTAATTT
** * * *
179294 ATTTAATTTTTTAAATCTCTTAGATATTAATTTTTAAAATATTATTACAATAGTATTATTTTATT
1 ATTT-ATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAGTACAATAGTATTATTTTAAT
*** * * * * * *
179359 TTTAATAAACTTGTATGA-ATAGAAATAATTGTTTTATGACATG-ACAAAAGGTT-ATAATAATT
65 CCGAATAAACTTGTATGATAAAAAAACAATTGGTTTATG--ATGAAAAAAAAGTTCATAATAATT
* * * * *
179421 TGAAATATATAATTGTTCAAATAG-TCATAACTATTTGAACTGGTTCGGTAAAC-A
128 TGAAATAGATAATTATTCAAATGGCT-ATAACTATTTGAACTGATTCGATAAACTA
* *
179475 GATTTATTTTTTAAATCTCTTACTTATTTATTTTTGAAATATTAGTA-AATTAGTTTTATTTTAA
1 -ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAGTACAA-TAGTATTATTTTAA
** *
179539 TCCGAATAGGCTTGTATGATAAAAAAACAATTGGTTTATGATGAAAAAAAAGTTCATAATGATTT
64 TCCGAATAAACTTGTATGATAAAAAAACAATTGGTTTATGATGAAAAAAAAGTTCATAATAATTT
* * * *
179604 GAAATAGATAATTATTTAAATGGCTTTAATTATTTGAACTGATTTGATAAACTA
129 GAAATAGATAATTATTCAAATGGCTATAACTATTTGAACTGATTCGATAAACTA
* * * * * * *
179658 ATTTATTTTTTAAATCTCTAACTTA-CAATTTTTGAAATATTAATA-AGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAGTACAATAGTATTATTTTAATC
179721 CGAATAA
66 CGAATAA
179728 GCTTTTCTGC
Statistics
Matches: 208, Mismatches: 38, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
180 23 0.11
181 89 0.43
182 94 0.45
183 2 0.01
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (182 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAGTACAATAGTATTATTTTAATC
CGAATAAACTTGTATGATAAAAAAACAATTGGTTTATGATGAAAAAAAAGTTCATAATAATTTGA
AATAGATAATTATTCAAATGGCTATAACTATTTGAACTGATTCGATAAACTA
Found at i:180518 original size:18 final size:18
Alignment explanation
Indices: 180465--180520 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
180455 ATCACAAAAC
*
180465 AAATAGTCATAACAATTT
1 AAATAGTCATAACTATTT
* *
180483 AAAATAG--ATAATTGTTT
1 -AAATAGTCATAACTATTT
180500 AAATAGTCATAACTATTT
1 AAATAGTCATAACTATTT
180518 AAA
1 AAA
180521 CGTTTTTAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
18 11 0.37
19 6 0.20
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (18 bp):
AAATAGTCATAACTATTT
Found at i:180565 original size:359 final size:361
Alignment explanation
Indices: 180088--181018 Score: 933
Period size: 359 Copynumber: 2.6 Consensus size: 361
180078 AATCATTGGT
* * * *
180088 ATTATTTTA-CAACAAAACAAAATGTCATAACGATTTGAAATAGATAA-TAGTTCAAATGGAT-A
1 ATTATTTTATC-ACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTA-TTCAAATAG-TCA
* * * * * * * * *
180150 TGACTATTTGAACTTGTT-TGCTAAATAGATTTTTTTTTTAAATCT-TGAACTTATTAATTTTTA
63 -AACTATTTAAAGTTATTCAG-AAAATAAATTTATTTTTTAAATCTAT-TACTTATTAATTTTTA
*** * *
180213 GAATATTAATAAATTAATATTATTTTATTTGGAATAAACTTTTATAAATAGAAACAATTGTTTTA
125 GAATATTAATAAATTAATATTATTTTATTCAAAATAAGCTTTTATGAATAGAAACAATTGTTTTA
* * * * * * *
180278 TGACCAAA-GAAAAGATCATAATGATTTGAAATAAATATTTTTTTAAATAGTCATAATTATTTGA
190 TGACAAAACAAAAAG-TCATAATGAGTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAA
** * * * * *
180342 ACTCGCTT-GGTAAATAGA-T-TTTTTTTAA-TCTTTTACTTATTAATTTTTGAAATTTTAATAA
254 ACT-GCTTCAATAAACAAATTATTTTTTTAATTCTCTTACTCATTAATTTTTGAAATATTAATAA
*
180403 ATTAATATTATTTTATTTTGAATAAGCTTGTATGAA-TAGAAACA
318 ATTAATATTATTTTATTTTGAATAAGCTTATATGAACT-GAAACA
* *
180447 ATTGA-TTTATCACAAAACAAATA-GTCATAACAATTTAAAATAGATAATTGTTTAAATAGTCAT
1 ATT-ATTTTATCACAAAACAAA-AGGTCATAACAATTTAAAATAGATAATTATTCAAATAGTCA-
* * *
180510 AACTATTTAAACGTT-TTTAGAAAAATAAATTTATTGTTTT-AAT-TATTATTTATTAATTTTTT
63 AACTATTTAAA-GTTATTCAG-AAAATAAATTTATT-TTTTAAATCTATTACTTATTAATTTTTA
* * ** ** *
180572 GAATATTAATAAATTTATATTATTTTATTCAAAATAAGCTTTCATGAATAGATCCAATTACTTTC
125 GAATATTAATAAATTAATATTATTTTATTCAAAATAAGCTTTTATGAATAGAAACAATTGTTTTA
* *
180637 TGACAAAACAAAAAGTCATAATGAGTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTAAA
190 TGACAAAACAAAAAGTCATAATGAGTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAAA
** * *
180702 CTTTTTCAATAAACAAATTCATTTTTTTAATTCTCTTACTCATTCATTTTTTAAATATTAATAAA
255 CTGCTTCAATAAACAAATT-ATTTTTTTAATTCTCTTACTCATTAATTTTTGAAATATTAATAAA
* * **** *
180767 TTAGTATTATTTTATTTTTAATTTTTTTATATTAACTGAAACA
319 TTAATATTATTTTATTTTGAATAAGCTTATATGAACTGAAACA
* ** * *
180810 ATTATTTTATTACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCAGAC
1 ATTATTTTATCACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTATTCAAATAGTCAAAC
* * * * * * *
180875 TATTTGAAGTTATTCAGTAAATATATTTATTTTTTAAATCTTTTACTTATTAATTATCAAAATAT
66 TATTTAAAGTTATTCAGAAAATAAATTTATTTTTTAAATCTATTACTTATTAATTTTTAGAATAT
* * *
180940 TAATAAATTAATATTATTTTAATCCAAATAAGCTTGT-TGAATAGAAACAATTGTTTTATGACAA
131 TAATAAATTAATATTATTTTATTCAAAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAA
*
181004 AATAAAAAGTCATAA
196 AACAAAAAGTCATAA
181019 CAATTATCTA
Statistics
Matches: 467, Mismatches: 84, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
358 3 0.01
359 184 0.39
360 32 0.07
361 58 0.12
362 75 0.16
363 114 0.24
364 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (361 bp):
ATTATTTTATCACAAAACAAAAGGTCATAACAATTTAAAATAGATAATTATTCAAATAGTCAAAC
TATTTAAAGTTATTCAGAAAATAAATTTATTTTTTAAATCTATTACTTATTAATTTTTAGAATAT
TAATAAATTAATATTATTTTATTCAAAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAA
AACAAAAAGTCATAATGAGTTGAAATAAATAATTGTTTAAATAGTCATAACTATTTAAACTGCTT
CAATAAACAAATTATTTTTTTAATTCTCTTACTCATTAATTTTTGAAATATTAATAAATTAATAT
TATTTTATTTTGAATAAGCTTATATGAACTGAAACA
Found at i:180598 original size:181 final size:179
Alignment explanation
Indices: 180099--181018 Score: 844
Period size: 181 Copynumber: 5.1 Consensus size: 179
180089 TTATTTTACA
* * * * * *
180099 ACAAAACAAAATGTCATAACGATTTGAAATAGATAATAGTTCAAATGGAT-ATGACTATTTGAAC
1 ACAAAACAAAA-GTCATAATGATTTGAAATAGATAATTGTTTAAATAG-TCATAACTATTTAAAC
* * * ** *
180163 TTGTTT-GCTAAATAGATTTTTTTTTTAAATCTTGAACTTATTAATTTTTAGAATATTAATAAAT
64 TT-TTTAGATAAATAAATTTATTTTTT-AATCTTTTACTTATTAATTTTTTGAATATTAATAAAT
** * * * *
180227 TAATATTATTTTATTTGGAATAAACTTTTATAAATAGAAACAATTGTTTTATG
127 TAATATTATTTTATTTTAAATAAGCTTGTATGAATAGAAACAATTGATTTATG
* * * * * * *
180280 ACCAAAGAAAAGATCATAATGATTTGAAATAAATATTTTTTTAAATAGTCATAATTATTTGAACT
1 ACAAAACAAAAG-TCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTAAACT
** * * *
180345 CGCTT-GGTAAATAGA-TT-TTTTTTAATCTTTTACTTATTAA-TTTTTGAAATTTTAATAAATT
65 -TTTTAGATAAATAAATTTATTTTTTAATCTTTTACTTATTAATTTTTTG-AATATTAATAAATT
* *
180406 AATATTATTTTATTTTGAATAAGCTTGTATGAATAGAAACAATTGATTTATC
128 AATATTATTTTATTTTAAATAAGCTTGTATGAATAGAAACAATTGATTTATG
** *
180458 ACAAAACAAATAGTCATAACAATTTAAAATAGATAATTGTTTAAATAGTCATAACTATTTAAACG
1 ACAAAACAAA-AGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTAAAC-
* * *
180523 TTTTTAGAAAAATAAATTTATTGTTTTAAT-TATTATTTATTAATTTTTTGAATATTAATAAATT
64 TTTTTAGATAAATAAATTTATT-TTTTAATCTTTTACTTATTAATTTTTTGAATATTAATAAATT
* ** ** *
180587 TATATTATTTTATTCAAAATAAGCTT-TCATGAATAGATCCAATT-ACTTTCTG
128 AATATTATTTTATTTTAAATAAGCTTGT-ATGAATAGAAACAATTGA-TTTATG
* *
180639 ACAAAACAAAAAGTCATAATGAGTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTAAACT
1 ACAAAAC-AAAAGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTAAACT
* * * * * *
180704 TTTTCA-ATAAACAAATTCATTTTTTTAATTCTCTTACTCATTCATTTTTTAAATATTAATAAAT
65 TTTT-AGATAAATAAATTTA-TTTTTTAA-TCTTTTACTTATTAATTTTTTGAATATTAATAAAT
* * **** * * *
180768 TAGTATTATTTTATTTTTAATTTTTTTATATTAACT-GAAACAATT-ATTTTATT
127 TAATATTATTTTATTTTAAATAAGCTTGTATGAA-TAGAAACAATTGA-TTTATG
* * * * *
180821 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCA-GACTATTTGAAGT
1 ACAAAACAAAA-GTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTAAACT
* * * ***
180885 TATTCAG-TAAATATATTTATTTTTTAAATCTTTTACTTATTAATTATCAAAATATTAATAAATT
65 T-TTTAGATAAATAAATTTATTTTTT-AATCTTTTACTTATTAATTTTTTGAATATTAATAAATT
* ** *
180949 AATATTATTTTAATCCAAATAAGCTTGT-TGAATAGAAACAATTGTTTTATG
128 AATATTATTTTATTTTAAATAAGCTTGTATGAATAGAAACAATTGATTTATG
*
181000 ACAAAATAAAAAGTCATAA
1 ACAAAA-CAAAAGTCATAA
181019 CAATTATCTA
Statistics
Matches: 603, Mismatches: 109, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
177 5 0.01
178 128 0.21
179 46 0.08
180 87 0.14
181 213 0.35
182 122 0.20
183 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (179 bp):
ACAAAACAAAAGTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTAAACTT
TTTAGATAAATAAATTTATTTTTTAATCTTTTACTTATTAATTTTTTGAATATTAATAAATTAAT
ATTATTTTATTTTAAATAAGCTTGTATGAATAGAAACAATTGATTTATG
Found at i:181290 original size:8 final size:8
Alignment explanation
Indices: 181264--181293 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
181254 CAATCAATTC
181264 TTTTCTTT
1 TTTTCTTT
*
181272 TTATCTTT
1 TTTTCTTT
181280 TTTTCTTT
1 TTTTCTTT
181288 TTTTCT
1 TTTTCT
181294 CTATCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTCTTT
Found at i:181298 original size:22 final size:21
Alignment explanation
Indices: 181261--181304 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
181251 TCACAATCAA
181261 TTCTTTTCTTTTTATCTTTTT
1 TTCTTTTCTTTTTATCTTTTT
181282 TTCTTTT-TTTCTCTATCTTTTT
1 TTCTTTTCTTT-T-TATCTTTTT
181304 T
1 T
181305 ATATTTGTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.14
21 8 0.38
22 10 0.48
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.80
Consensus pattern (21 bp):
TTCTTTTCTTTTTATCTTTTT
Done.