Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168217.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26447
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:245 original size:26 final size:26
Alignment explanation
Indices: 215--267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
205 GTTGACATAG
215 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
241 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
267 G
1 G
268 ATCACAGCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2878 original size:26 final size:26
Alignment explanation
Indices: 2842--2894 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2832 GTTGACTTAG
2842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2868 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2894 G
1 G
2895 ATCACACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3344 original size:896 final size:893
Alignment explanation
Indices: 1204--5374 Score: 5666
Period size: 896 Copynumber: 4.7 Consensus size: 893
1194 CCTTGGGCAC
* *** *
1204 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGTATAGGGGGTGAGCGCA
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGG-GGGGGGGGTGTGCGCA
* *
1269 CATGAAGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
1334 AGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
1399 GTCTGAAATAGGGACACTTTTTTCAAATGG-CCACAAAATACTGTACACTTCGAGTTTTTAGCTG
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCC-CAAAATCCTGTACACTTCGAGTTTTTAGCTG
* *
1463 AATCTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTC
259 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTC
* * *
1528 TTCTGAAAAAATTTTAAAACAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
324 TTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
1593 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
1658 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGAT
454 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * * * * *
1723 CCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCTGCCCGCTCGCTTGTTTCGTCGAT
519 CCACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC-GCCTGCCCGCTCGTTTCGTCGGT
* * * *
1788 CGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCGAACCAATGGTTGCAGTAGTAG
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGTAGTAG
* * * * *
1853 GATCGGTAGTGCAT-AAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCG
648 GATTGATA--GCATCAACGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
* * * * *
1917 GTTGAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCTCAATCTAAG
711 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
1982 CATACGGATTTCATTCCCAGTGTAAGATCAAACCAGATCGAGGGTTACGGGTGCACATGCTGGGC
776 CATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGGGC
* *
2047 TTAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAG
841 TCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAG
* * *
2100 CATCGTCAGAGAACCTGACCGACGGCATTGGGG-TTC--CGA----GCGGAGGGGGTGTGCGCAC
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGGGGGGTGTGCGCAC
* * *
2158 ATGATGTGTGATGGGTGCTTGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGA
66 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
2223 GAACTCTCACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
131 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * * * *
2288 TTTTAAATGGGGACACTTTTTTTAAATGG-CCAAAAAATCCTGTACACTTTGGGTTTTTTGCTGA
196 TCTGAAATGGGGACACTTTTTTCAAATGGTCC-CAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* *
2352 ATTTTTTTATGCATGCCAAAAAAAATACAGGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCT
260 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCT
*
2417 TCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
325 TCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
2482 GAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
390 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
2547 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATC
455 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
*
2612 CACAGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCTGCCCGCTCGTTTCGTCGGTT
520 CACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC-CGCCTGCCCGCTCGTTTCGTCGGTT
** *** *
2677 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATTGAATTGAGGGTTGCAGTAGCAG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCAAGGGTTGCAGTAGTAG
* * * * * *
2741 GATTGATAGCACTCAA-GGGGGACCCAATCGATCCCTGGCTTGCTCATCCTGTCCCTCTGGCCGG
648 GATTGATAGCA-TCAACGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* *
2805 TTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
712 TTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
2870 ATACGGAGTTCATTCCTAGTGTAAGATCACACCAGACCGAGGGTTGCGGGTGCACATACTGGGCT
777 ATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGGGCT
* * * * *
2935 CGGGCATGTGCTGGTGCCGTATTTTTTTTCACTCAGGGCACTATCGTCGGAG
842 CAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAG
* * * *
2987 CATCGTCGGAGAACTTGACCGGCGGCATTAGGGTTTC-ACCCATTGGGGGCGGGGGGGTTGTGCG
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGA-CGATTGGGGG-GGGGGGG-TGTGCG
* *
3051 CACATGATGTACGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
63 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
3116 CTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
128 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
3181 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCT
193 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCT
3246 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTT
258 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTT
3311 CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
323 CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
3376 ATGAGGCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
388 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
3441 AGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
453 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
3506 T-C-CA---T--G------G---CT-T-G-C-GC--A-TCCCGCCT---CTCTCGTTTCATCGGT
518 TCCACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCGCCTGCCCGCTCGTTTCGTCGGT
* * * * * * *
3545 TGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTG-TGATAGGA
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAG-TAGTA
* * * * * *
3609 GGATTGGTAGCACACAACGGGGGACCCGACAGATCCCCGACTTGCGCATCCTGCCCTTTTGGTCG
647 GGATTGATAGCA-TCAACGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
** * * * * * *
3674 ACTAAGCGCCCGCAGGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCGTTCCCAGTCTAAG
711 GTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
3739 CTTACGGAGTTCATTCCCAGTGCAAGATCGGATCAGACCGAGGTTTGTGGGTGCACATACTGGGC
776 CATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGGGC
** * * *
3804 TCAGGCATGTGCTGGTGCCATAATTTTTTTTTGCTCGGGGCACCATC-ACTTGAG
841 TCAGGCATGTGCTGGTGCC-GCATTTTTTTTCGCTCGGGGCACCATCGTC-GGAG
* * *** * *
3858 CATCGTCAGAGAACCTGATCGGTTGCATTGGGGTTCCGATGATTGGGGGGTGGGGGGTGTGCGCA
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGG-GGGGGGTGTGCGCA
* * * * * *
3923 CGTGATGTGCGACGGGTGCTGGTGCTTGGCCCTTGTATTGGCCCCCTATCCCTCACCAAACCTCA
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
3988 AGAACTCACACTCCCTTAAAGAGCACTTGACATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
4053 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * *
4118 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
260 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCT
* * * * **
4183 TCTGAAAAAATTTTTAAAAAAATCCCCAAACAGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAA
325 TCTGAAAAAA-TTTTAAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
4248 ACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-C
388 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
4312 ATAAAAATGGCATTGGAATTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
453 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** * * * * *
4377 ACCATGGCTTGCGCATCCCACCTCTCTGGCTGGCGTAGTGGCCGCCCGCCCGCTCGTTTTGTCGA
518 TCCACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT-GCCGCCTGCCCGCTCGTTTCGTCGG
* * * * *
4442 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGAACCGAACCAAGGGCTACGGTAGTA
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGTAGTA
* * * * * * *
4507 GGA-TCAGCAGCATGC-AGGAGGGGACCCGACCAATCCCTGACTTGCACATCCTGCCCCTCTGGT
647 GGATTGA-TAGCAT-CAACG-GGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
* * *
4570 CGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTA
709 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
4635 AGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCAAGG-GCACATGCTG
774 AGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGC-GGGTGCACATACTG
* * * * *
4699 GGCTCGGGCATGTGCTAGTGCCGCA-TTTTTTTCGCTCGAGGCACCATCGCCGGGG
838 GGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAG
*
4754 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGTGTGCGCA
1 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGG-GGGGGGTGTGCGCA
* * * * *
4819 CAAGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATTAAACCTTG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
4884 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* ** * *
4949 GTCTGAAATAGGGACACTTTTTTCAAATGGTTACAAAATCCTATACACTTCGAGTTTTTAGCTAA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * * * *
5014 ATTTTTTTGTGCATGGCAATAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCT
260 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCT
* * *
5079 TTTGAAAAAATTTTAAAAAAAT-TCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
325 TCTGAAAAAATTTTAAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * * *
5143 CGAGTCGTCTTGCCATGAAACTTCTCATGAAGGCTTAAAGGACTATTTTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
5208 TAAAAATGGCATTGGCAAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * ** *
5273 CCAC-GACTTACGCATCCTGCCTCTCTGGTTGGCGTAGTGCCCGCCTGCCCGCTTGTTTCGTCGG
519 CCACAG-CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG-CCGCCTGCCCGCTCGTTTCGTCGG
5337 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
5375 TGGATCAGAC
Statistics
Matches: 2890, Mismatches: 325, Indels: 121
0.87 0.10 0.04
Matches are distributed among these distances:
868 1 0.00
869 80 0.03
870 428 0.15
871 142 0.05
872 101 0.03
873 2 0.00
874 1 0.00
876 2 0.00
877 1 0.00
878 2 0.00
879 1 0.00
880 2 0.00
883 1 0.00
886 3 0.00
887 237 0.08
888 562 0.19
889 4 0.00
890 2 0.00
891 3 0.00
893 4 0.00
894 99 0.03
895 176 0.06
896 788 0.27
897 7 0.00
898 238 0.08
899 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (893 bp):
CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATTGGGGGGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCTT
CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCGCCTGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTGCAGTAGTAGGAT
TGATAGCATCAACGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGTTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGGGCTCAGG
CATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCGTCGGAG
Found at i:4138 original size:870 final size:868
Alignment explanation
Indices: 25--5298 Score: 5114
Period size: 896 Copynumber: 6.0 Consensus size: 868
15 CGTAGTACCC
* * * * *
25 TCCCGCC-CGCTCGTTTCCTCAGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGA
1 TCCCGCCTCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * ** * * * * *
89 CCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACACAGGGGGGGACCCGACC-GATCCCTGAC
66 CTGAACCAAGGGTTGCAGTAGTAGGATCGGTAGCACACAAGGGGGGACCCGACCAGATCCCCGAC
* * * ** * * * * *
153 TTGTGCATCCTGGCCCTCTGGTCGGCTGAGTTG-CCGCACACTTGTTTCATGGGTTGACATAGGC
131 TTGCGCATCCTGCCCCTCTGGCCGATTAAG-CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
217 ATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCACAGCAGACCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCG
* * * * * * *
282 AGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTTGCCCGAGGC
260 AGGGTTGCGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGC
* *
347 ACCATCGC-C-G-G-A----CA-AG---CTGACCGGCGGCATAGGGGTTCCGACGATTAGGGGGG
325 ACCATC-CTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCC-ACGATT----GGG
*
400 GCGGGAAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
384 G-GGG--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
465 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TT-
446 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
528 -T---ACT-G-C--TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATA
511 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
* * * * * *
585 CACTTCGAGTTTTTAGCTGAATTTTTTTTTGAATGCCAACAAAAATGCAAGGATCACATCTATCA
576 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * *
650 AGTGTGGGGCAAAAAATCCTTCTGGAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTTAAA
641 AGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAA
* *
715 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
706 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* *
780 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGGCAGAAATATGAAGATGTGCCTAAACG
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* * *
845 CACCTACCACCCTATCAATCCACGGCTTACGCA
836 CACCTACCACCCTATCGATCCATGGCTTGCGCA
878 TCCCGCCTCTCTGGCCGGCATAATGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
1 TCCCGCCTCTCT---C-G--T--T------------------TC-----GTCGGTTGGCTTAGGC
* ** * * * * * ** *
943 ATACGGAGTTCATTCCTAGTCTAAGATCAAACACG-ACCAAGGGTTAC-GCAGCAAGATCGACAA
35 ATACGGAGTTCATTCCCAGTCTAAGATCGGAC-TGAACCAAGGGTTGCAGTAGTAGGATCGGTAG
* * ** * ** * *
1006 CACGC-AGGGGGGAACCCGACC-GATGCCTAACTTACGCATCCTGCCCCTCTGGCCGGCTGAGTG
99 CACACAAGGGGGG-ACCCGACCAGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGATTAAGCG
* * * *
1069 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
163 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * ****
1134 GTTCATTCCCAGTGCAAGATCGGATC-GAACCAAGGGTTGCGGTTGC-CGTATTTTTTTTCA--C
228 GTTCATTCCCAGTGTAAGATCAGACCAG-ACCGAGGGTTGCGGGTGCACATA-CTGGGCTCAGGC
* * * * * * **
1195 --CT--TGG-GCAC-CA-------TCG-TCGGAGAACC-TGAC-C-GACGGCAT--T-GGGGTTC
291 ATGTGCTGGTGC-CGCATTTTTTTTCGCTCGGGGCACCAT-CCTCGGA--GCATCGTCAGAGAAC
* * * * * * * ** *
1240 C-GA-CGATTGGGGTATAGGGGGTGAGCGCAC-A-TGAAGTGTGATGGGTGCTG-GTAC-T--TG
352 CTGACCGA---CGGCAT-TGGGGT--TC-CACGATTG-GGGGGGGGGGGTG-TGCGCACATGATG
** ** ** ** * ** * ** * * *** ** **
1297 -GCCCT-TATATTGGCCCCCTATCCCTCATCA---AACCTCGAGAACTCACTC-CCCCTTAAAGA
408 TGCGATGGGTGCTGG-TACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCA-TCAAACC-TCGAGA
* *** *** *
1356 GCATTTGA--GAT------------------TTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGT
469 AC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1401 CTGAAATAGGGACACTTTTTTCAAATGGCCACAAAATACTGTACACTTCGAGTTTTTAGCTGAAT
533 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* * *
1466 CTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCTTC
598 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTC
* * * *
1531 TGAAAAAATTTTAAAACAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
663 TGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
1596 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAA
728 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
1661 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCA
793 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
1726 TGGCTTGCGCA
858 TGGCTTGCGCA
1737 TCCCGCCTCTCTGGCCGGCATAGTGCCTGCCCGCTCGCTTGTTTCGTCGATCGGCTTAGGCATAC
1 TCCCGCCTCTCT---C-G--T--T---T---CG-T--C--G----GT---T-GGCTTAGGCATAC
* * * **
1802 AGAGTTCATTCCCAGTCTAAGATC-GAATCGAACCAATGGTTGCAGTAGTAGGATCGGTAGTGCA
39 GGAGTTCATTCCCAGTCTAAGATCGGACT-GAACCAAGGGTTGCAGTAGTAGGATCGGTAGCACA
* * * * *
1866 TAAGGGGGGACCCGACC-GATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGTTGAA-CGCCTG
103 CAAGGGGGGACCCGACCAGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGATT-AAGCGCCCG
* * * *
1929 CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCTCAATCTAAGCATACGGATTTC
167 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
1994 ATTCCCAGTGTAAGATCAAACCAGATCGAGGGTTACGGGTGCACATGCTGGGCTTAGGCATGTGC
232 ATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTGGGCTCAGGCATGTGC
* *
2059 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACG
297 TGGTGCCGCATTTTTTTTCGCTCGGGGCACCATCCTCGGAGCATCGTCAGAGAACCTGACCGACG
* * * *
2124 GCATTGGGGTT-C-CGA----GCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTTGTACT
362 GCATTGGGGTTCCACGATTGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
2183 TGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAAGAGCAT
427 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
2248 TTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTTAAATGGGGACACTTTTTTTAA
492 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * * * *
2313 ATGGCCAAAAAATCCTGTACACTTTGGGTTTTTTGCTGAATTTTTTTATGCATGCCAAAAAAAAT
557 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* * **
2378 ACAGGGATCACGTCTACCAAGTGTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAAATCTTG
622 ACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCA
*
2443 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACA
687 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
2508 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
752 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
*
2573 ATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTG
817 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-C-CA---T--G------G---CT-T-
2638 GCCGACGTA
864 G-CG-C--A
* *
2647 GTGCTCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
1 -T-CCCGCCT---CTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *** * * * * * *
2712 TCAGATTGAATTGAGGGTTGCAGTAGCAGGATTGATAGCACTCAA-GGGGGACCCAATC-GATCC
61 TCGGACTGAACCAAGGGTTGCAGTAGTAGGATCGGTAGCACACAAGGGGGGACCCGACCAGATCC
* * * * * * * *
2775 CTGGCTTGCTCATCCTGTCCCTCTGGCCGGTTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTT
126 CCGACTTGCGCATCCTGCCCCTCTGGCCGATTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* *
2840 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATCACACCAG
191 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAG
* * * *
2905 ACCGAGGGTTGCGGGTGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCACTCA
256 ACCGAGGGTTGCGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCG
* * * * * * * *
2970 GGGCACTATCGTCGGAGCATCGTCGGAGAACTTGACCGGCGGCATTAGGGTTTCACCCATTGGGG
321 GGGCACCATCCTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCA-CGATTGGGG
* *
3035 GCGGGGGGGTTGTGCGCACATGATGTACGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCT
385 G-GGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
3100 ATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
448 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
3165 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCCTGTACA
513 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
3230 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
578 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* *
3295 TGTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
643 TGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAA
* * *
3360 TCATGAAAAATAGAAAATGAGGCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTG
708 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
3425 TATGAATTTACAAGCCAGAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
3490 CCTACCACCCTATCGATCCATGGCTTGCGCA
838 CCTACCACCCTATCGATCCATGGCTTGCGCA
* * *
3521 TCCCGCCTCTCTCGTTTCATCGGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCGGA
1 TCCCGCCTCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
3586 CTGGACCAAGGGTTG-TGATAGGAGGATTGGTAGCACACAACGGGGGACCCGA-CAGATCCCCGA
66 CTGAACCAAGGGTTGCAG-TAGTAGGATCGGTAGCACACAAGGGGGGACCCGACCAGATCCCCGA
* * * * * * *
3649 CTTGCGCATCCTGCCCTTTTGGTCGACTAAGCGCCCGCAGGCTCATTTCATAGGTTGACTTAGGC
130 CTTGCGCATCCTGCCCCTCTGGCCGATTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * * *
3714 ATACAGAGTTCGTTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTGCAAGATCGGATCAGACCG
195 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCG
* * ** *
3779 AGGTTTGTGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCATAATTTTTTTTTGCTCGGGG
260 AGGGTTGCGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCC-GCATTTTTTTTCGCTCGGGG
* * *** *
3844 CACCATCACT-TGAGCATCGTCAGAGAACCTGATCGGTTGCATTGGGGTTCCGATGATTGGGGGG
324 CACCATC-CTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCC-ACGATTGGGGGG
* * * *
3908 TGGGGGGTGTGCGCACGTGATGTGCGACGGGTGCTGGTGCTTGGCCCTTGTATTGGCCCCCTATC
387 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
3973 CCTCACCAAACCTCAAGAACTCACACTCCCTTAAAGAGCACTTGACATTTTACAGGTTTGCTGCC
451 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
4038 AATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTT
516 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
* *
4103 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
581 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGT
* * *
4168 GGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCCCAAACAGTAAAAAGTTTTAAAAAT
646 GGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAAT-CTCAAACCGTAAAAAGTTTCAAAAAT
** *
4233 TGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTTAAGGGACCATTGT
709 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
4298 ATGAATTTACAAG-CATAAAAATGGCATTGGAATTGCAGAAATATGAAGATGTGCCTAAACCCAC
774 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
*
4362 CTACCACCCTATCGAACCATGGCTTGCGCA
839 CTACCACCCTATCGATCCATGGCTTGCGCA
* *
4392 TCCCACCTCTCTGGCTGGCGTAGTGGCCGCCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATAC
1 TCCC-GC-CTCT--CT--CGT--T--------------TC-----GTCGGTTGGCTTAGGCATAC
* * * * * * * * * **
4457 GGAGTTCATTCCTAGTCTAAGATTGAACCGAACCAAGGGCTACGGTAGTAGGATCAGCAGCATGC
39 GGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGGGTTGCAGTAGTAGGATCGGTAGCACAC
* * * *
4522 -AGGAGGGGACCCGACCA-ATCCCTGACTTGCACATCCTGCCCCTCTGGTCGGA-TGAGCGCCCG
104 AAGG-GGGGACCCGACCAGATCCCCGACTTGCGCATCCTGCCCCTCTGG-CCGATTAAGCGCCCG
* *
4584 CACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
167 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
4649 ATTCCCAGTGTAAGATCAGACCAGACCAAGGGTTGCAAGG-GCACATGCTGGGCTCGGGCATGTG
232 ATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGC-GGGTGCACATACTGGGCTCAGGCATGTG
* * * * *
4713 CTAGTGCCGCA-TTTTTTTCGCTCGAGGCACCATCGC-CGGGGCATCGCCGGAGAACCTGACCGA
296 CTGGTGCCGCATTTTTTTTCGCTCGGGGCACCATC-CTCGGAGCATCGTCAGAGAACCTGACCGA
* *
4776 CGGCATTGGGGTTTCGACGATTGGGGGGCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGG
360 CGGCATTGGGG-TTCCACGATTGGGGGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
4841 TACTTGGCCTTTATATTTGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAAAA
423 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
4906 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
488 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
4971 TCAAATGGTTACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGGCAATAA
553 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * *
5036 AAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAAT
618 AAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
*
5101 -TCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
683 CT-CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
5165 TCTCATGAAGGCTTAAAGGACTATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGGCA
747 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * * *
5230 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCA
812 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
*
5287 TCCTGCCTCTCT
1 TCCCGCCTCTCT
5299 GGTTGGCGTA
Statistics
Matches: 3661, Mismatches: 526, Indels: 430
0.79 0.11 0.09
Matches are distributed among these distances:
842 1 0.00
843 1 0.00
844 2 0.00
845 1 0.00
847 2 0.00
849 8 0.00
850 2 0.00
851 2 0.00
853 7 0.00
854 6 0.00
855 47 0.01
856 146 0.04
857 13 0.00
858 2 0.00
859 339 0.09
860 2 0.00
862 5 0.00
863 6 0.00
864 10 0.00
865 1 0.00
867 14 0.00
868 31 0.01
869 111 0.03
870 445 0.12
871 172 0.05
872 112 0.03
873 20 0.01
874 8 0.00
875 9 0.00
876 7 0.00
877 9 0.00
878 9 0.00
879 8 0.00
880 6 0.00
881 3 0.00
882 2 0.00
883 12 0.00
884 154 0.04
885 52 0.01
886 3 0.00
887 233 0.06
888 399 0.11
889 6 0.00
890 4 0.00
891 3 0.00
892 2 0.00
893 7 0.00
894 97 0.03
895 96 0.03
896 755 0.21
897 6 0.00
898 229 0.06
899 7 0.00
900 1 0.00
901 3 0.00
904 3 0.00
905 1 0.00
906 1 0.00
907 3 0.00
908 1 0.00
909 1 0.00
910 1 0.00
911 2 0.00
912 7 0.00
915 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (868 bp):
TCCCGCCTCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CTGAACCAAGGGTTGCAGTAGTAGGATCGGTAGCACACAAGGGGGGACCCGACCAGATCCCCGAC
TTGCGCATCCTGCCCCTCTGGCCGATTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCGA
GGGTTGCGGGTGCACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGGCA
CCATCCTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCACGATTGGGGGGGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGC
CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCATGGCTTGCGCA
Found at i:4649 original size:26 final size:26
Alignment explanation
Indices: 4613--4662 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4603 GACTTAGGCG
4613 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
4639 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
4663 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:11590 original size:26 final size:26
Alignment explanation
Indices: 11561--11613 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11551 GTTGACTTAG
11561 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
11587 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
11613 G
1 G
11614 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:13338 original size:26 final size:26
Alignment explanation
Indices: 13302--13354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13292 GTTGACTTAG
*
13302 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
13328 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
13354 G
1 G
13355 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13737 original size:888 final size:872
Alignment explanation
Indices: 10821--14116 Score: 3576
Period size: 858 Copynumber: 3.8 Consensus size: 872
10811 CTCTTGTATT
* *
10821 ACCTAACCGACGGCATTGGGGTTCCGGCGAATGGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
1 ACCTGACCGACGACATTGGGGTTCCGGCG-AT----GGGC-GGGGGGTGTGCGCACATGATGTGC
* *
10886 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATA
60 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACA
* *** * *
10951 CCCCCTTAAAGAGTGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
125 CCCACTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * * * * *
11016 GGCACACCTTTTTCAAATGATCACAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
190 GGGACACTTTTTTAAAATGGTCAGAAAATCATGTACACTTCGACTTTTTAGCTGAATT-TTTT-T
* * * * * *
11081 -GCATACCAAAAAAAATACAAGGATCA-AGTCTACCTAGTTTGGGGCCAAAAA-TCATTCTGAAA
253 AGCATGCCAACAAAAATACAAGGATCACA-TCTACCAAGTTT-GGGACAAAAACTCCTTCCGAAA
** * * * * * *
11143 AAATTTTTAAAAAATTTGAAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACAAGTCAT
316 AAATTTAAAAAAAATCTCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCAT
*
11208 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATG
381 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
11273 GCATTCG-CATGGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
446 GCA-TCGCCATCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** ** * *
11337 TTGCGCATCCCGCCTTTCTGGTCACCTTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTAGCTTA
510 TTGCGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCGCCCG--C--TCGTTTCGTCAGTTGGCTTA
* * * * * * ** * * ***
11402 GGCATACAGAGTTCATTCCCAGTCAAAGATCAGACCGAATTAAGGGTTGCGGCAGTAAGATCGGT
571 GGCATACGGAGTTCATT-CCA--CTAAGATCAAACCAAACTGA-GGTTGCGATAGCAGGATCAAC
*** * * * * * **
11467 AGCATGTA-GGGGGGACCCGACCGATCCTCG-GCTTACGCATCCTGCCTCTTTGGTCG-GTTAAG
632 AGCACACAGGGGGGGACCCGACCGATCCCCGAG-TTGCGCATCCTGCCCCTCTGGCCGACCT-AG
* * * * * *
11529 CACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
695 CGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACA
* ** * * * * * * *
11594 GAGTTCATTCTCAGTGTAAGATTAGACCGGTCTGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
760 GAGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACAGGTGCACATGCTCGGATCGAGC
* *
11659 ATGTGCTGGTGTCGCAT-TTTTTTTCGC-CAGGGGCACCATCG-TCGGAGA
825 ATGTGCTGGTG-CACATATATTTTTCGCTC-GGGGCACCATCGCT-GGAGA
* * * * *
11707 ACCTAACCGATGGCATTGTGGTTCCGGCGGTTGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
1 ACCTGACCGACGACATTGGGGTTCCGGC-GAT--GGGC-GGGGGGTGTGCGCACATGATGTGCGA
* * **
11772 TGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAGC
62 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACA-C
* *
11837 CC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
126 CCACTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
11901 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAATTTTTTTTGC
191 GGACACTTTTTTAAAATGGTCAGAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTTTAGC
* * * * **
11966 ATGCCAATAAAAATACAAGGATCACGTCTAGCAAGTTTAGGG-CTAAAAA-TCTTTCTAAAAAAA
256 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGAC-AAAAACTCCTTCCGAAAAAA
* * * * * *
12029 TTTAAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGCGTCGTCT
319 TTTAAAAAAAATCTC-AAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCATCT
12093 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
383 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * * * * *
12158 AAT-GGCATGGCAAAAATATGAAGATGTGCCCAAACCCACCTACCACCCCATTGATTCGCGGCTT
448 -ATCGCCATCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
12222 GCGCATCCCGGCTCTCTGGCCGACGTAGTGCCTGCCCATCTGCTCATTTCGTCGGTTGGCTTAGG
512 GCGCATCCCGTCTCTCTAGCCGGCGCAGTGCCCG-CC--C-GCTCGTTTCGTCAGTTGGCTTAGG
*** ** * * * ***
12287 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGC-AGCAGCAAGATCGGTA
573 CATACGGAGTTCATT-CCA--CTAAGATCAAACCAAACTGA-GGTTGCGA-TAGCAGGATCAACA
* * * * ** * *
12351 GCACGCATGGGGGGACCCGGCCGATCCCCGACTTATGCATCCTGCCCCTCTGGCCG-GCTGAGCA
633 GCACACAGGGGGGGACCCGACCGATCCCCGAGTTGCGCATCCTGCCCCTCTGGCCGACCT-AGCG
* * * *
12415 ACCGCACGCTCATTTC----G-TG-C----G--T--TGA---C--T--TAG-----GCATACAGA
697 CCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGA
* * * * * *
12454 GTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTGCAGGTGCACTTGCTGGGCTCGGGCAT
762 GTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTACAGGTGCACATGCTCGGATCGAGCAT
* * *
12519 GTGCTGGTGCTACATTTTTTTTTCGCTCGGGGCGCCATCGCTGGAGA
827 GTGCTGGTGC-ACATATATTTTTCGCTCGGGGCACCATCGCTGGAGA
* *
12566 ACCTGACCGGCGGCATTGGGGTTCCGGCGATAGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
1 ACCTGACCGACGACATTGGGGTTCCGGCGAT---GGGCGGGGGGTGTGCGCACATGATGTGCGAT
*
12631 GGGTGCTGGTACTTGGCCTTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCC
63 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCC
* * * * *
12696 ACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATTGGG
128 ACTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
12761 ACACTTTTTTCAAATGGTCAGAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTCAGCA
193 ACACTTTTTTAAAATGGTCAGAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTTT-AGCA
* * * *
12826 TGCCAACAAAAATACAAGGATCACATCTTCCATGTTTGGGGC-AAAACTGCTTCCGAAAAAATTT
257 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACAAAAACTCCTTCCGAAAAAATTT
** *
12890 AAAAAAAATCTCGTACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
322 AAAAAAAATCTCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
*
12955 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
387 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCG
** * *
13020 CCATGGCAGAACTATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
452 CCATCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
13085 TCCCGTCTCTCTGGCCGGCGTAGTGCCGGCCCGTCCGCTTGTTTCGTCAGTTGGCTTAGGCATAC
517 TCCCGTCTCTCTAGCCGGCGCAGT----GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
* * * ** *
13150 GGAGTTCATTCCCAGACTAGGATCAAACCGAACTGAGGGTTGCGGTAGCAGGATCGGCAGCAGAC
578 GGAGTTCATT-CC--ACTAAGATCAAACCAAACTGA-GGTTGCGATAGCAGGATCAACAGCACAC
*
13215 A-GGGGGGTCCCGACCGATCCCCGAGTTGCGCATCCTGCCCCTCTGGCCGACCTAGCGCCCGCAC
639 AGGGGGGGACCCGACCGATCCCCGAGTTGCGCATCCTGCCCCTCTGGCCGACCTAGCGCCCGCAC
*
13279 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
704 GTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATT
* *
13344 CCCAGTGTAAGATCGGACCAGATCGAGGGTTACGGGTGCACATGCTCGGATCGAGCATGTGCTGG
769 CCCAGTGTAAGATCGGACCAGACCGAGGGTTACAGGTGCACATGCTCGGATCGAGCATGTGCTGG
13409 TGC-CATAATATTTTTCGCTCGGGGCACCATCGCCACAGCATCGTCGGAGA
834 TGCACAT-ATATTTTTCGCTCGGGGCACCAT-----C-G---C-T-GGAGA
* * *
13459 ACCTGACTGACGACGTTGGGGTTCCGGCGAT-TG-GGGGGGTGTGCGCACATGATGTGCGATGGG
1 ACCTGACCGACGACATTGGGGTTCCGGCGATGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
13522 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
66 TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCCACT
* * * *
13587 TGAAGATCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACG
131 TAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
13652 CTTTTTTAAAATGGTCATAAAATCCTGTACACTTCGACTTTTTAGCTGAA-TTTTTTATGCATGC
196 CTTTTTTAAAATGGTCAGAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTTTA-GCATGC
* * *
13716 CAACAAAATATACAAGGATCACCTCTACCAAGTTTGGGACAAAAACTCCTTCTGAAAAAATTTTA
260 CAACAAAA-ATACAAGGATCACATCTACCAAGTTTGGGACAAAAACTCCTTCCGAAAAAATTTAA
* * ** *
13781 AAAAAATCTCAAACCGTAAAAATTTTTAAAAATCATGAAAAATAGAGAACGAGTCATCTTGCCAT
324 AAAAAATCTCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* *
13846 TAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGC
389 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGCC
*
13911 ATCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
454 ATCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
13976 CCGTCTCTCTAGCCGGCGCAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
519 CCGTCTCTCTAGCCGGCGCAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
* * *
14041 CATTCCTCTAAGATCAGATCAAACTGAGGTTGCGATAGCAGGATCAACAGCACACAGGGGGGGAC
584 CATTCCACTAAGATCAAACCAAACTGAGGTTGCGATAGCAGGATCAACAGCACACAGGGGGGGAC
*
14106 CCGATCGATCC
649 CCGACCGATCC
14117 TCAGTGTCAT
Statistics
Matches: 2107, Mismatches: 227, Indels: 156
0.85 0.09 0.06
Matches are distributed among these distances:
857 69 0.03
858 573 0.27
859 94 0.04
860 3 0.00
861 2 0.00
862 6 0.00
863 3 0.00
865 1 0.00
867 2 0.00
869 1 0.00
870 2 0.00
871 2 0.00
872 1 0.00
874 2 0.00
876 1 0.00
878 4 0.00
879 2 0.00
880 1 0.00
881 28 0.01
882 56 0.03
883 410 0.19
884 267 0.13
885 48 0.02
886 29 0.01
887 23 0.01
888 222 0.11
889 221 0.10
891 1 0.00
892 1 0.00
893 32 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
ACCTGACCGACGACATTGGGGTTCCGGCGATGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACACCCACT
TAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTAAAATGGTCAGAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTTTAGCATGCC
AACAAAAATACAAGGATCACATCTACCAAGTTTGGGACAAAAACTCCTTCCGAAAAAATTTAAAA
AAAATCTCAAACCATAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGCCAT
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTAGCCGGCGCAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
TTCCACTAAGATCAAACCAAACTGAGGTTGCGATAGCAGGATCAACAGCACACAGGGGGGGACCC
GACCGATCCCCGAGTTGCGCATCCTGCCCCTCTGGCCGACCTAGCGCCCGCACGTTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGA
TCGGACCAGACCGAGGGTTACAGGTGCACATGCTCGGATCGAGCATGTGCTGGTGCACATATATT
TTTCGCTCGGGGCACCATCGCTGGAGA
Found at i:20772 original size:26 final size:26
Alignment explanation
Indices: 20742--20794 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732 GTTGACTTAG
20742 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
* *
20768 GCATACGAAGTTCATTCCTAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
20794 G
1 G
20795 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21677 original size:26 final size:26
Alignment explanation
Indices: 21641--21693 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21631 GTTGACTTAG
* *
21641 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21667 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21693 G
1 G
21694 GACAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24363 original size:26 final size:26
Alignment explanation
Indices: 24325--24374 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24315 GACTTAGGCG
24325 TACGGAGTACATTCCCAGTCTAAGCA
1 TACGGAGTACATTCCCAGTCTAAGCA
* *
24351 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTACATTCCCAGTCTAAG
24375 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTACATTCCCAGTCTAAGCA
Found at i:24868 original size:899 final size:897
Alignment explanation
Indices: 19874--26447 Score: 8458
Period size: 899 Copynumber: 7.4 Consensus size: 897
19864 TAGGCATATA
* * * * * *
19874 GAGTTCATTTCCAGTATAAGATCGGATCGGACCAAGGGTTACGGGTGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
** * * * *
19939 ATGTGCTGGTGCTGCATTTTTTTTTCGCCCGGGGCACCATCACCGAAGCATTGTTGGAGAACCTG
66 ATGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTG
* * * *
20004 ACCGGCGACATTGGGGTTCCAGCAATTGGGGGGGCGAGGGGGTGGTGTTCGCACATGATGTGTGA
130 ACCGGCGACATTGGGGTTCCGGCGATT-GGGGGGCG-GGGGGGGGTGTGCGCACATGATGTGTGA
* *
20069 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
20134 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
20199 GATACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
20264 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTTTGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * *
20329 TTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTTAAAAATAGAAAACGAGTTGTCTTGC
453 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
20394 CATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
518 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
20459 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGTCACCCTATCAATCCACGGCTTGCGC
583 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * * * * *
20524 ATCCCGCCTCTCTGGCTGGCGTAGTGCTTGCCTGCCCGCCCGTTTCGTCGATTGGCTTAAGTATA
648 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * * * * *
20589 TGGAGTTTATTCCCAG-CATAAGATCAGACCAGACCAAGGGTTCCGACAGTAGGATCGATAGCAT
713 CGGAGTTCATTCCCAGTC-TAAGATCAGACCAGACTGAGGGTTGCGGCA-CAGGATCGGTAGCAC
** * * *
20653 GCAGGGGGGACCCGACTAATCCTCGGCTTTG-GCATCCTGCCCCTCTGGCTGGCTGAGTGCCTAC
776 GCAGGGGGGACCCGACCGATCCCCGGC-TTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCAC
* * *
20717 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
840 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
20775 AAGTTCATTCCTAGTGTAAGATCAGATCGGATCGAGGGTTACGAGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
* * * * *
20840 ATGTGCTGGTGACACATTTTTTTTCGCTCGGGGCACCATCACCGGAGCATCGACGGAGAACCTGG
66 ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
* * * *
20905 CCGGC-AGCATTAGGGTTCTGGCGATGGGGGGGCAGGGAGGGGGGTGTACGCACATGATGTGTGA
131 CCGGCGA-CATTGGGGTTCCGGCGATTGGGGGGC-GGG-GGGGGGTGTGCGCACATGATGTGTGA
*
20969 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
21034 CTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** *
21099 GACACTTTTTTCAAATGGTCACAAAATCCAATACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
21164 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTTTGAAAAAGCT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* *
21229 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTGC
453 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
21294 CTTGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
21359 GGC-CGAGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCG
583 GGCATG-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
21423 TATCCCGCCTCTCT-GACGACGTAGTGCCCGCCCACCTGCTCGTTCCGTCAGTTGGCTTAGGCAT
647 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
21487 ACAGAGTTCATTCCTAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCAGGATCCGTAGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA-CAGGATCGGTAGCAC
* * * * *
21552 GCAGGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTACCCCTTTGGCCGGCTAAGCGCCCACA
776 GCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACA
** * *
21617 CGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACA
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * *
21674 GAGTTCATTCCCAGTGTAAGGA-CAGACTAGACCGAGGGTTGCGGGTGCACATGTTGGGCTCGGG
1 GAGTTCATTCCCAGTGTAA-GATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * * *
21738 CATGTGCTGGTACCACATTTTTTTCTCGCCCGGGGCACCATCGTTGGAGCATTGTCGGAGAACCT
65 CATGTGCTGGTGCCACATTTTTTT-TCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCT
* * * * *
21803 AACCGGCGGCATTGGGGTTTCGGAGATTGGGGGGC--GGGGGGGTGTGCGTACATGATGTGTGAT
129 GACCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGTGAT
* *
21866 GGGTGCTGGCACTTGGCCCTTATATTGGCCCCCCATTCCCTCATCAAACCTCGAGAACTCACACC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCACACC
* * * *
21931 CCTTTAAAGAGCATTTGAGATTTTACAGTTTTCCTGCCAGTAGCCACTAAAGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
** * *
21996 GACACACTTTTCAAATGGTCACAAAAGCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* **
22061 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTGAAACTCCTTCTGAAAAAAGT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-T
* * *
22126 TTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAATGAGTCGTCTTG
452 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
22190 CCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
22255 TGGCATGACAGAAATATGAAGATGTGCCTAAACACACTTGCCATCCTATCGATCCACGGCTTGCG
582 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
22320 CATCCTGCCTCTCTGGCCAACGTAGTGCCCGTCCGCCCACTCGTTTCATCGATTGACTTAGGCAT
647 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * * * *
22385 ACCGAGTTCATTCCCAATCTAAGATTGGATCGGACTGAGGGTTGCGGTAGCAGGAACGATGGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA-CAGGATCGGTAGCAC
* * * * * * * * * **
22450 GTAGGGGGGACCCAACCGATCCCCGGCCTACGTATCCTACACCTCTAGCCGGCTGAGCGCCTGCA
776 GCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACA
* * * *
22515 CGCTCGTTTTGTGGGTTGACTTAGACATACAGAGTTCATTCCCAGTCTCAGCATACG
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
22572 GAGTTCATTCCCAGTGTAAGATCGGATCAGACCAAGGGTTACGGGTGCACATGCTGGGCAT-GGG
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGC-TCGGG
** *
22636 CATGTGCTGGTGCTGCATTTGTTTTT-GCCCGTGGCA-C--CATC---G---C--CGGAGAACCT
65 CATGTGCTGGTGCCACATTT-TTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCT
* * * * * * * * *
22689 AACCGGTGGCATTGGGGTTTCGGAGATT---------GGGGGGGTTTGCGTACATTATGTGCGAT
129 GACCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGTGAT
*
22745 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
22810 CCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
**
22875 ACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
22939 AGCCAACAAAAATACAAGGATCTCGTTTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* **
23004 TAAAAAAATCCCGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAATAAGTCGTCTTGCC
454 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
23069 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** *
23134 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCAAAGCTTGCACA
584 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * * *
23199 TCCCGCCTCTCTAGCCGGTGTAGTGCCCGCCCACCCACAT-GTTTCGTTGGTTGGCTTAGGCATA
649 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCATA
** * *
23263 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGTAGGAGCGGTAGTAGG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG-T-TG-C-----G-GC---A-CAGG
** * * * * *
23328 ATCGACAGCATGCAAGGGGGGACTCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCTGGT
765 ATCGGTAGCACGC-AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGC
* * *
23393 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCA
829 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
23458 -AGCG
894 TA-CG
** * * * *
23462 GAGTTCATTCCCAGTGTAAGATTGGACTGGTCTGAGGGTTACGGGTGCACATTCTGGGCTCGGGC
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
* * * * *
23527 ATGTACCGGTGCCACA--TTTTTTCCCCCGGGGCACCATCGTCGGAGCATCGTAGG-GAACCTGA
66 ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
* ** * * * *
23589 CCGG-TAGCATTGGGGTTCCGATGATTGGGGGGAC-GGGGGGAGTTTACGCACATGATGTGTGAG
131 CCGGCGA-CATTGGGGTTCCGGCGATTGGGGGG-CGGGGGGGGGTGTGCGCACATGATGTGTGAT
* * * *
23652 GGGTGCTCGTACTTGGCCCTTATATTGG-CCTCTATCCTTCATCAAACCTTGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
23716 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
23781 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
324 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
23846 TGCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGTGTCAAAACTCCTTCCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* * * *
23911 TAAACAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCC
454 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
23976 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCCTTG
519 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
24041 GAATGGCAAAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
24106 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATGC
649 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * *
24171 GGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTT-TAGCACTAGGATTGGCAGCACA
714 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGCAC-AGGATCGGTAGCACG
* * * *
24234 CAGGGGGGACCC-AGCCAATCCCCGACTTGCTCATCCTGCCCCTCTGGCTGGCTGAGCGCCTACA
777 CAGGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACA
* * *
24298 CGTTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTACATTCCCAGTCTAAGCATACG
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
24355 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
* * * * *
24420 ATGTGCTGGTGCCACATTTTTTTTCACCCGAGGCAACATCGTCGGA-CATCATCGGAGAACCTGA
66 ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
* * *
24484 TCGACGACATTGGGGTTCCGGCGATTGGGGGGGCGGGTGGGGGGGTTTGCGCACATGATGTGTGA
131 CCGGCGACATTGGGGTTCCGGCGATT-GGGGGGC-GG-GGGGGGGTGTGCGCACATGATGTGTGA
* * * * *
24549 TGGGTGCTTGAATTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
24614 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-GCTAGCCATTAAAGTGTCTGAAATGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATGG
* *
24678 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTGGAGTTTTCAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
24743 TATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGTCAAAACTCCTTCT-AAAAGAA
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AA
** **
24807 TTTTAAAAAAATCTTGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
24872 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
24937 TTGGCTTGGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGC
581 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
25002 GCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCGTCGATTGGCTTAGGCA
646 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
25067 TACGAAGTTCATTCCCAGTCTAAGATCAGACCAAAAC-GAGGGTTGCGGCAGCAGGATCGGTAAC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACTGAGGGTTGCGGCA-CAGGATCGGTAGC
** * * * *
25131 ACGCAGGGGGGGACCCGATTGATCCCCGGCATGCACATCCTGCCCCTCTGGCCGACTGAGCGCCC
774 ACGCA-GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCC
* * * *
25196 GCACGCTCGTTTCGTGGGTTGACTTGGGCATATGGAGTTCATT-ACAGTCTAAGCATACG
838 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
25255 AAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTACGGGTGCACATGATGGGCTTGGGC
1 GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
* *
25320 ATGTGCTGGTG-C-CTTTTTTTTTCGCCTGGGG------CA-C----CATCGTCGGAGAACCTGA
66 ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
* ** * * *
25372 CCGGCGGCATTGGGGTTCCAACGATT-GGGAG-GGTGGGGGGTGTGCGCACATGATGTGGGATGG
131 CCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGTGATGG
*
25435 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
25500 -TAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
**
25564 ACTTTTTTCAAATGGTTTCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
25629 CCAA-AAAAAGTACAAGGATCACGTCTCCCAAGTTTGGGGCTAAAAATCCTTCT-AAAAGAATTT
391 CCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AATTT
* * * * * *
25692 AAAAAAAATCCCGAACAGTAAAAATTTTTGAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
454 TAAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
25757 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
25822 GGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
583 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
25887 ATCCCGCCTCTCTGG-CG-CGTAGTGCCCGCCCGCCTCGCCTCGTTTC-TCGGTTGGCTTAGGCA
648 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CG-CTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
25949 TACGGAGTTCATT-CCAGTCTAATAGTCTAGA-C--AC-CAGGGTTGC-GTAGAGGATTGGCAGC
711 TACGGAGTTCATTCCCAGTCTAAGA-TC-AGACCAGACTGAGGGTTGCGGCACAGGATCGGTAGC
* * * *
26008 AC-CTAGGGGGGA-TCG-TC--T-CCCGGCTTGTGCATCCTGCCTGCCTC--GCT-GCTGA-CAC
774 ACGC-AGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC--CCTCTGGCTGGCTGAGCGC
*
26063 CCGCACGCTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
836 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * *
26124 GAGTTCATTCCCAGTTGTAAGAT--GA-CGGA-CGAGGGTTGTGGGTGCACATG-TTGGCTCGAG
1 GAGTTCATTCCCAG-TGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* ** * *
26184 CATGTGCTGGTGCCGCA-TTTTTTTCG-CCGGGGCACCATCAATCGGAGCATCACCAGAGAACTT
65 CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATC-ATCGGAGCATCGTCGGAGAACCT
* * * * * *
26247 GACCAGTGACATTGGGGTTTCGACGATTGGGGGGTGAGGGGGGGTGTGCGCACATGATGTGTGAT
129 GACCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGTGAT
* * * *
26312 GGGTGTTGGTACTT-GCCCTTATATTGGCCCTCTGTCCCTCATCAAACCTCGAGAACTTACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
26376 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGGAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
26441 ACACTTT
324 ACACTTT
Statistics
Matches: 4982, Mismatches: 584, Indels: 236
0.86 0.10 0.04
Matches are distributed among these distances:
865 24 0.00
866 29 0.01
867 4 0.00
868 33 0.01
869 40 0.01
870 11 0.00
871 20 0.00
872 2 0.00
873 5 0.00
874 1 0.00
875 2 0.00
876 12 0.00
877 375 0.08
878 193 0.04
879 173 0.03
880 1 0.00
881 31 0.01
882 226 0.05
883 276 0.06
884 2 0.00
885 1 0.00
886 42 0.01
887 5 0.00
888 47 0.01
889 16 0.00
890 166 0.03
891 5 0.00
892 2 0.00
893 174 0.03
894 24 0.00
895 53 0.01
896 66 0.01
897 404 0.08
898 369 0.07
899 767 0.15
900 689 0.14
901 155 0.03
902 1 0.00
905 1 0.00
906 147 0.03
907 388 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
CCGGCGACATTGGGGTTCCGGCGATTGGGGGGCGGGGGGGGGTGTGCGCACATGATGTGTGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCACAGGATCGGTAGCACGCAGG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
Done.