Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167829.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87344
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
File 1 of 2
Found at i:78 original size:18 final size:20
Alignment explanation
Indices: 55--103 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
45 GTTTAATATC
55 ATTATATCAATATA-ATT-T
1 ATTATATCAATATATATTCT
*
73 ATTATATAAATA-ATATTCT
1 ATTATATCAATATATATTCT
92 ATT-TATCAATAT
1 ATTATATCAATAT
104 TAATATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 1 0.04
18 21 0.81
19 4 0.15
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTATATCAATATATATTCT
Found at i:318 original size:22 final size:22
Alignment explanation
Indices: 287--329 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
277 AAGATAAAAA
*
287 ATTATTATAATTACAATATTTT
1 ATTATAATAATTACAATATTTT
**
309 ATTATAATAATTTTAATATTT
1 ATTATAATAATTACAATATTT
330 ATAAATATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTATAATAATTACAATATTTT
Found at i:504 original size:21 final size:21
Alignment explanation
Indices: 464--504 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
454 ATAATATTAC
*
464 ATTATATTATAAATATTAATT
1 ATTATATTATAAATAATAATT
* *
485 ATTATTTTATAATTAATAAT
1 ATTATATTATAAATAATAAT
505 AAATAAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATATTATAAATAATAATT
Found at i:1092 original size:28 final size:28
Alignment explanation
Indices: 1039--1095 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
1029 TTTTAGGTTT
* *
1039 TATTTAATTAATTGTTAATTAAATATTA
1 TATTTAATTAATTGATAAATAAATATTA
*
1067 TATTTATTTAATT-ATAAAT-AATA-TA
1 TATTTAATTAATTGATAAATAAATATTA
1092 TATT
1 TATT
1096 ATTCAATAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 6 0.23
26 4 0.15
27 4 0.15
28 12 0.46
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
TATTTAATTAATTGATAAATAAATATTA
Found at i:1446 original size:27 final size:31
Alignment explanation
Indices: 1389--1454 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 31
1379 ATAATAATTT
* *
1389 TAATTAATATTTTATTATTTATATATTTAAA
1 TAATTAATATTTTATTATCTATATATATAAA
1420 TAATTAATA-TTTA-TA-CTATA-ATATAAA
1 TAATTAATATTTTATTATCTATATATATAAA
1447 -ATATTAAT
1 TA-ATTAAT
1455 TATGTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.03
27 12 0.38
28 4 0.12
29 2 0.06
30 4 0.12
31 9 0.28
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
TAATTAATATTTTATTATCTATATATATAAA
Found at i:1454 original size:62 final size:62
Alignment explanation
Indices: 1324--1456 Score: 146
Period size: 62 Copynumber: 2.1 Consensus size: 62
1314 TAGTTTAATT
* *
1324 TATTAATTAACATTTATTAATTAGTAAATGTAATTAATTAATTATATACTATTTGATAATAA
1 TATTAATTAACATTTATTAATTAGTAAATGTAAATAATTAATTATATACTATATGATAATAA
* * * * * *
1386 TTTTAATTAATATTTTATTATTTA-TATATTTAAATAATTAATATTTATACTATAAT-ATAA-AA
1 TATTAATTAACA-TTTATTAATTAGTAAATGTAAATAATTAAT-TATATACTAT-ATGATAATAA
1448 TATTAATTA
1 TATTAATTA
1457 TGTTAAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
62 35 0.59
63 23 0.39
64 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (62 bp):
TATTAATTAACATTTATTAATTAGTAAATGTAAATAATTAATTATATACTATATGATAATAA
Found at i:1995 original size:10 final size:10
Alignment explanation
Indices: 1945--2010 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
1935 AATTTTAAAT
1945 TAAATTTATA
1 TAAATTTATA
1955 TAAATAGAATTATA
1 TAAAT----TTATA
* *
1969 TAAATTGATT
1 TAAATTTATA
1979 TAAATTTATA
1 TAAATTTATA
1989 TAAATTTA-A
1 TAAATTTATA
*
1998 TAATATTTTTA
1 TAA-ATTTATA
2009 TA
1 TA
2011 TTGTTTGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
9 4 0.09
10 28 0.62
11 3 0.07
14 10 0.22
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (10 bp):
TAAATTTATA
Found at i:2057 original size:23 final size:22
Alignment explanation
Indices: 2018--2062 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
2008 ATATTGTTTG
*
2018 ATTTAATTTTAAATCAATAATT
1 ATTTAATATTAAATCAATAATT
*
2040 ATTTAATAATTAATTCAATAATT
1 ATTTAAT-ATTAAATCAATAATT
2063 CAATAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTTAATATTAAATCAATAATT
Found at i:2069 original size:23 final size:24
Alignment explanation
Indices: 2026--2076 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
2016 TGATTTAATT
*
2026 TTAAATCAATAATTATTTAATA-A
1 TTAAATCAATAATTATATAATATA
*
2049 TTAATTCAATAATTCA-ATAATATA
1 TTAAATCAATAATT-ATATAATATA
2073 TTAA
1 TTAA
2077 GTTATATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (24 bp):
TTAAATCAATAATTATATAATATA
Found at i:2228 original size:16 final size:18
Alignment explanation
Indices: 2207--2239 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2197 TATTGCTTAT
2207 ATAAT-AATT-TATTTAA
1 ATAATAAATTATATTTAA
2223 ATAATAAATTATATTTA
1 ATAATAAATTATATTTA
2240 TTTCAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATAATAAATTATATTTAA
Found at i:2259 original size:23 final size:22
Alignment explanation
Indices: 2207--2265 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
2197 TATTGCTTAT
2207 ATAATAATTTATTTAAATAATAA
1 ATAAT-ATTTATTTAAATAATAA
*
2230 ATTATATTTATTTCAAAATAA-AA
1 ATAATATTTATTT--AAATAATAA
2253 ATAATATTTATTT
1 ATAATATTTATTT
2266 GATAATTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 8 0.25
23 18 0.56
24 6 0.19
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATATTTATTTAAATAATAA
Found at i:2495 original size:20 final size:22
Alignment explanation
Indices: 2470--2516 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
2460 TATAAATTTG
* *
2470 GTTTAATAATTATTC-TAA-TA
1 GTTTAAAAATTAGTCATAATTA
2490 GTTTAAAAATTAGTCATAATTA
1 GTTTAAAAATTAGTCATAATTA
2512 GTTTA
1 GTTTA
2517 TTAACTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 13 0.57
21 3 0.13
22 7 0.30
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (22 bp):
GTTTAAAAATTAGTCATAATTA
Found at i:4396 original size:10 final size:10
Alignment explanation
Indices: 4381--4475 Score: 54
Period size: 10 Copynumber: 10.7 Consensus size: 10
4371 ACATAAATAA
4381 ATTAATAATT
1 ATTAATAATT
4391 ATTAATAA--
1 ATTAATAATT
4399 ATTAATAA--
1 ATTAATAATT
* *
4407 ATAAAT-ATA
1 ATTAATAATT
*
4416 ATTATTAATT
1 ATTAATAATT
4426 ATTAAT--TT
1 ATTAATAATT
4434 A-TAATAA-T
1 ATTAATAATT
4442 ATT-ATAAATT
1 ATTAAT-AATT
*
4452 ATTTATAATT
1 ATTAATAATT
4462 A--AAT-ATT
1 ATTAATAATT
4469 ATTAATA
1 ATTAATA
4476 GTATAATAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
7 9 0.13
8 22 0.33
9 10 0.15
10 24 0.36
11 2 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
ATTAATAATT
Found at i:4402 original size:8 final size:8
Alignment explanation
Indices: 4376--4419 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
4366 ATATAACATA
4376 AATAAATT
1 AATAAATT
4384 AATAATTATT
1 AATAA--ATT
4394 AATAAATT
1 AATAAATT
*
4402 AATAAATA
1 AATAAATT
4410 AATATAATT
1 AATA-AATT
4419 A
1 A
4420 TTAATTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 19 0.61
9 4 0.13
10 8 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
AATAAATT
Found at i:4564 original size:25 final size:28
Alignment explanation
Indices: 4513--4592 Score: 85
Period size: 28 Copynumber: 2.8 Consensus size: 28
4503 TAATTGGACA
*
4513 ATAATTATAAATAATTTATAATATTATT
1 ATAAATATAAATAATTTATAATATTATT
*
4541 ATAAATATTAATAA-TTAT-AT-TTATT
1 ATAAATATAAATAATTTATAATATTATT
4566 ATAAACTAATAAATTTAATTTATAATA
1 ATAAA-T-ATAAA--TAATTTATAATA
4593 AGTTAATATT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
25 10 0.24
26 3 0.07
27 8 0.19
28 12 0.29
29 3 0.07
30 4 0.10
31 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (28 bp):
ATAAATATAAATAATTTATAATATTATT
Found at i:4580 original size:24 final size:24
Alignment explanation
Indices: 4522--4593 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
4512 AATAATTATA
*
4522 AATAATTTATAATATTATTATAAAT
1 AATAAATTATAAT-TTATTATAAAT
*
4547 ATTAATAATTAT-ATTTATTATAAACT
1 AAT-A-AATTATAATTTATTATAAA-T
*
4573 AATAAATT-TAATTTATAATAA
1 AATAAATTATAATTTATTATAA
4594 GTTAATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
23 1 0.03
24 14 0.36
25 13 0.33
26 6 0.15
27 5 0.13
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (24 bp):
AATAAATTATAATTTATTATAAAT
Found at i:4694 original size:23 final size:24
Alignment explanation
Indices: 4652--4710 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
4642 TTATTAAGTT
*
4652 ATTTATAATTATAACTTAATAATTA
1 ATTTA-AATTATAAATTAATAATTA
4677 ATTTAAATT-TAAATTAATAATTA
1 ATTTAAATTATAAATTAATAATTA
4700 ATATT-AATTAT
1 AT-TTAAATTAT
4711 TAATAATTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 19 0.61
24 7 0.23
25 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTTAAATTATAAATTAATAATTA
Found at i:4700 original size:7 final size:7
Alignment explanation
Indices: 4656--4718 Score: 51
Period size: 7 Copynumber: 8.9 Consensus size: 7
4646 TAAGTTATTT
4656 ATAATT-
1 ATAATTA
4662 ATAACTTA
1 ATAA-TTA
4670 ATAATTA
1 ATAATTA
*
4677 ATTTAAATTT
1 A--T-AATTA
4687 A-AATTA
1 ATAATTA
4693 ATAATTA
1 ATAATTA
4700 AT-ATTA
1 ATAATTA
*
4706 ATTATTA
1 ATAATTA
4713 ATAATT
1 ATAATT
4719 GTTATTTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
6 15 0.32
7 22 0.47
8 4 0.09
9 1 0.02
10 5 0.11
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (7 bp):
ATAATTA
Found at i:4705 original size:13 final size:13
Alignment explanation
Indices: 4667--4715 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
4657 TAATTATAAC
4667 TTAATAATTAAT-
1 TTAATAATTAATA
*
4679 TTAA-ATTTAA-A
1 TTAATAATTAATA
4690 TTAATAATTAATA
1 TTAATAATTAATA
*
4703 TTAATTATTAATA
1 TTAATAATTAATA
4716 ATTGTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 9 0.29
12 9 0.29
13 13 0.42
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TTAATAATTAATA
Found at i:4809 original size:25 final size:25
Alignment explanation
Indices: 4775--4854 Score: 74
Period size: 25 Copynumber: 3.1 Consensus size: 25
4765 TAAATATCTA
*
4775 TTATTAAATATAAATAATTATTTAT
1 TTATTAAATATAAATAATTATATAT
*
4800 TTATTAAATA-AAGATTATTATATA-
1 TTATTAAATATAA-ATAATTATATAT
*
4824 TTATTATAATAATATAATAATATATCTAT
1 TTATTA-AAT-ATA-AATAAT-TATATAT
4853 TT
1 TT
4855 TATTTCGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
24 8 0.18
25 22 0.50
26 1 0.02
27 5 0.11
28 6 0.14
29 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (25 bp):
TTATTAAATATAAATAATTATATAT
Found at i:5140 original size:14 final size:14
Alignment explanation
Indices: 5121--5148 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
5111 AATATAATAC
5121 AAATTAAATATTTA
1 AAATTAAATATTTA
5135 AAATTAAATATTTA
1 AAATTAAATATTTA
5149 TATTTTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATTAAATATTTA
Found at i:5800 original size:19 final size:19
Alignment explanation
Indices: 5712--5814 Score: 69
Period size: 19 Copynumber: 5.6 Consensus size: 19
5702 TATTAAAATG
5712 AATTATAA-TATAATCATAAT
1 AATTATAATTATAAT--TAAT
*
5732 -ATTATAATT-TGATT-AT
1 AATTATAATTATAATTAAT
5748 AATT-TAATTA-ATATTAACT
1 AATTATAATTATA-ATTAA-T
* *
5767 AA-TA-ACTTTTAAATTAAT
1 AATTATAATTAT-AATTAAT
5785 AATTATAATTATAATTAAT
1 AATTATAATTATAATTAAT
*
5804 AAGTATAATTA
1 AATTATAATTA
5815 ATAAATACAA
Statistics
Matches: 65, Mismatches: 7, Indels: 23
0.68 0.07 0.24
Matches are distributed among these distances:
16 7 0.11
17 7 0.11
18 8 0.12
19 37 0.57
20 6 0.09
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.46
Consensus pattern (19 bp):
AATTATAATTATAATTAAT
Found at i:7682 original size:11 final size:11
Alignment explanation
Indices: 7665--7698 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7655 AACTATTTAC
7665 ATAATTATATT
1 ATAATTATATT
* *
7676 GTAATTATATC
1 ATAATTATATT
7687 ATAATTATATT
1 ATAATTATATT
7698 A
1 A
7699 GATACCTAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (11 bp):
ATAATTATATT
Found at i:8008 original size:28 final size:24
Alignment explanation
Indices: 7949--8041 Score: 61
Period size: 28 Copynumber: 3.8 Consensus size: 24
7939 AATAAACTAT
*
7949 ATATTAATCATAAT-TT-A-TATA
1 ATATTAATAATAATATTAATTATA
* *
7970 ATAATT-TTAATATTACTTAATTATA
1 AT-ATTAATAATAATA-TTAATTATA
7995 TACTATTAAATAATTAATATTAATTATA
1 -A-TATT-AATAA-TAATATTAATTATA
*
8023 ATATTAATAATTA-ATTAAT
1 ATATTAATAATAATATTAAT
8042 AATACTTTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
21 7 0.12
22 3 0.05
23 8 0.14
24 3 0.05
25 9 0.16
26 8 0.14
27 2 0.04
28 12 0.21
29 4 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTAATAATAATATTAATTATA
Found at i:8037 original size:25 final size:28
Alignment explanation
Indices: 7986--8037 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
7976 TTAATATTAC
7986 TTAATTATATACTATTAAATAATTAATA
1 TTAATTATATACTATTAAATAATTAATA
8014 TTAATTATA-A-TATT-AATAATTAAT
1 TTAATTATATACTATTAAATAATTAAT
8038 TAATAATACT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.42
26 4 0.17
27 1 0.04
28 9 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
TTAATTATATACTATTAAATAATTAATA
Found at i:8104 original size:14 final size:13
Alignment explanation
Indices: 8081--8125 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
8071 TTATAAAAAT
8081 ATATTTATTATAA
1 ATATTTATTATAA
8094 ATATTTGATTATAA
1 ATATTT-ATTATAA
*
8108 ATATTTATAATAA
1 ATATTTATTATAA
*
8121 TTATT
1 ATATT
8126 AATAAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:8555 original size:23 final size:23
Alignment explanation
Indices: 8529--8586 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
8519 TTATTTTTGT
8529 TTATATAAATTATTTATTAAT-AA
1 TTATATAAATTATTTA-TAATCAA
8552 TTATTATAAA-TATTTATAATCAA
1 TTA-TATAAATTATTTATAATCAA
*
8575 ATAT-TAAATTAT
1 TTATATAAATTAT
8587 CCAACTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.13
22 8 0.26
23 13 0.42
24 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TTATATAAATTATTTATAATCAA
Found at i:8781 original size:23 final size:22
Alignment explanation
Indices: 8755--8801 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
8745 AGCAGATAAT
*
8755 TTAAACATATTTATTATAAATTA
1 TTAAACATATTAATTAT-AATTA
**
8778 TTAAAGTTATTAATTATAATTA
1 TTAAACATATTAATTATAATTA
8800 TT
1 TT
8802 TATTAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAACATATTAATTATAATTA
Found at i:8835 original size:7 final size:7
Alignment explanation
Indices: 8788--8858 Score: 53
Period size: 7 Copynumber: 10.7 Consensus size: 7
8778 TTAAAGTTAT
8788 TAATT-A
1 TAATTAA
*
8794 TAATTAT
1 TAATTAA
*
8801 TTATTAA
1 TAATTAA
8808 T-A-TAA
1 TAATTAA
8813 T-ATTAA
1 TAATTAA
8819 TTAATTAA
1 -TAATTAA
8827 TAATTAA
1 TAATTAA
*
8834 TAAGTAA
1 TAATTAA
* *
8841 TAAGTCA
1 TAATTAA
8848 TAATTAA
1 TAATTAA
8855 -AATT
1 TAATT
8859 TTATTATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
5 5 0.09
6 13 0.24
7 31 0.57
8 5 0.09
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (7 bp):
TAATTAA
Found at i:9042 original size:25 final size:25
Alignment explanation
Indices: 9014--9124 Score: 73
Period size: 25 Copynumber: 4.2 Consensus size: 25
9004 ACTTAATATC
*
9014 AATTGTAATAATAATT-ATAATTTAT
1 AATTATAATAAT-ATTAATAATTTAT
* *
9039 AATTATTATAATATTAATTATTTAT
1 AATTATAATAATATTAATAATTTAT
* *
9064 -ATTATAAATTATAATATAATCATTTTAT
1 AATTAT-AATAAT-AT-TAAT-AATTTAT
* * *
9092 ATTTAATAATAATAATAATGAATTTAA
1 AATT-ATAATAATATTAAT-AATTTAT
9119 AATTAT
1 AATTAT
9125 TAATTAAAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
24 8 0.12
25 22 0.34
26 4 0.06
27 16 0.25
28 6 0.09
29 7 0.11
30 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.49
Consensus pattern (25 bp):
AATTATAATAATATTAATAATTTAT
Found at i:9057 original size:28 final size:28
Alignment explanation
Indices: 9019--9126 Score: 86
Period size: 28 Copynumber: 4.0 Consensus size: 28
9009 ATATCAATTG
9019 TAATAATAATTATAATTTATAATTATTA
1 TAATAATAATTATAATTTATAATTATTA
* *
9047 TAATATTAATTATTTATATTATAA--ATTA
1 TAATAATAATTA-TAAT-TTATAATTATTA
* *
9075 TAAT-ATAATCAT--TTTAT-ATT-TAA
1 TAATAATAATTATAATTTATAATTATTA
* *
9098 TAATAATAATAATGAATTTAAAATTATTA
1 TAATAATAATTAT-AATTTATAATTATTA
9127 ATTAAAATGT
Statistics
Matches: 62, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
22 1 0.02
23 10 0.16
24 8 0.13
26 1 0.02
27 9 0.15
28 22 0.35
29 5 0.08
30 6 0.10
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TAATAATAATTATAATTTATAATTATTA
Found at i:9063 original size:16 final size:16
Alignment explanation
Indices: 9028--9075 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
9018 GTAATAATAA
*
9028 TTATAATTTATAATTA-
1 TTATAATAT-TAATTAT
9044 TTATAATATTAATTAT
1 TTATAATATTAATTAT
* *
9060 TTATATTATAAATTAT
1 TTATAATATTAATTAT
9076 AATATAATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATAATATTAATTAT
Found at i:9804 original size:15 final size:16
Alignment explanation
Indices: 9766--9809 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
9756 TAAAATGGTA
9766 TTATTAT-ATTAATAT
1 TTATTATAATTAATAT
9781 TAATATTATAATTAA-AT
1 T--TATTATAATTAATAT
9798 TTATTATAATTA
1 TTATTATAATTA
9810 TCGATTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.46
17 9 0.35
18 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATAATTAATAT
Found at i:10691 original size:18 final size:18
Alignment explanation
Indices: 10651--10713 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
10641 TTTTATTTAT
* *
10651 ATTAATTAACATTTAATA
1 ATTAATTAATATTGAATA
* *
10669 TTTAATTAATATTGATTA
1 ATTAATTAATATTGAATA
**
10687 ATTAATTAAT-TAAAATA
1 ATTAATTAATATTGAATA
10704 ATTAA-TAATA
1 ATTAATTAATA
10714 ATAATAGAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
16 4 0.11
17 9 0.25
18 23 0.64
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATTAATTAATATTGAATA
Found at i:10707 original size:9 final size:10
Alignment explanation
Indices: 10671--10731 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
10661 ATTTAATATT
*
10671 TAATTAATAT
1 TAATTAATAA
*
10681 TGATTAATTAA
1 TAATTAA-TAA
10692 TTAATTAA-AA
1 -TAATTAATAA
10702 TAATTAATAA
1 TAATTAATAA
10712 TAA-TAATAGA
1 TAATTAATA-A
10722 -AATTAATAA
1 TAATTAATAA
10731 T
1 T
10732 TAATATTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
9 15 0.36
10 19 0.45
11 2 0.05
12 6 0.14
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (10 bp):
TAATTAATAA
Found at i:11648 original size:33 final size:36
Alignment explanation
Indices: 11579--11655 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
11569 TAATATAATT
11579 TTAATAATTTATAACAATTAATATTATAATTATCTA
1 TTAATAATTTATAACAATTAATATTATAATTATCTA
* *
11615 TTAATAATTTGTTAATAA-TAAT-TTATAA-T-TCTA
1 TTAATAATTT-ATAACAATTAATATTATAATTATCTA
11648 TTAATAAT
1 TTAATAAT
11656 ATATTATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 12 0.32
34 1 0.03
35 6 0.16
36 14 0.37
37 5 0.13
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (36 bp):
TTAATAATTTATAACAATTAATATTATAATTATCTA
Found at i:11651 original size:22 final size:21
Alignment explanation
Indices: 11613--11664 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
11603 TATAATTATC
*
11613 TATTAATAATTTGTTAATAATA
1 TATT-ATAATTTATTAATAATA
11635 -ATTTATAATTCTATTAATAATA
1 TA-TTATAATT-TATTAATAATA
11657 TATTATAA
1 TATTATAA
11665 AAAACAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 7 0.27
22 18 0.69
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TATTATAATTTATTAATAATA
Found at i:11830 original size:33 final size:33
Alignment explanation
Indices: 11742--11861 Score: 94
Period size: 33 Copynumber: 3.8 Consensus size: 33
11732 ATGAAATCAT
* * *
11742 TATTAA-ATAATATAATTATTATTAATTTATAA
1 TATTAATATATTATAAATATTATTAATATATAA
* *
11774 TATTAACTTACATTAT-AAT-TTATTGAGTATA-AA
1 TATTAA--TATATTATAAATATTATT-AATATATAA
11807 TATTAATATATTATAAATATTATTAA-AT-TAA
1 TATTAATATATTATAAATATTATTAATATATAA
* *
11838 T-TTAAAATATTA-AAATATTTTTAA
1 TATTAATATATTATAAATATTATTAA
11862 AATTTTACTC
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
29 11 0.15
30 10 0.14
31 12 0.17
32 10 0.14
33 18 0.25
34 6 0.08
35 5 0.07
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (33 bp):
TATTAATATATTATAAATATTATTAATATATAA
Found at i:12063 original size:21 final size:21
Alignment explanation
Indices: 12013--12064 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
12003 ATAATATTTT
*
12013 TAATTAA-ATT-TTTTAATAA
1 TAATTAATATTATGTTAATAA
*
12032 TGA-TAATTATTATGTTAATAA
1 TAATTAA-TATTATGTTAATAA
12053 TAATTAATATTA
1 TAATTAATATTA
12065 ATATAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.12
19 2 0.08
20 3 0.12
21 15 0.58
22 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TAATTAATATTATGTTAATAA
Found at i:12076 original size:13 final size:15
Alignment explanation
Indices: 12034--12079 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
12024 TTTAATAATG
* *
12034 ATAATTATTATGTTA
1 ATAATAATTATATTA
12049 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
12065 AT-ATAATT-TATTA
1 ATAATAATTATATTA
12078 AT
1 AT
12080 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:12138 original size:67 final size:66
Alignment explanation
Indices: 12003--12143 Score: 150
Period size: 67 Copynumber: 2.2 Consensus size: 66
11993 ATTTAATACC
* * *
12003 ATAATATTTTTAA--TTAAATTTTTTAATAATGATAATTATTATGTTAATAATAATTAATATTAA
1 ATAATATTATTAATTTTAAATTTTTTAATAATAATAAGTATTATGTTAATAATAATTAATATTAA
*
12066 T
66 A
*
12067 ATAAT-TTATTAATTTTAAATTTGTTTAATTAATAATAAGTATTA-GATTAATGATAA-TAA-AT
1 ATAATATTATTAATTTTAAATTT-TTTAA-TAATAATAAGTATTATG-TTAATAATAATTAATAT
12128 TATAGA
63 TA-A-A
12134 ATAATATTAT
1 ATAATATTAT
12144 AATAATATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
63 6 0.09
64 5 0.08
65 12 0.19
66 10 0.16
67 27 0.42
68 4 0.06
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (66 bp):
ATAATATTATTAATTTTAAATTTTTTAATAATAATAAGTATTATGTTAATAATAATTAATATTAA
A
Found at i:12209 original size:26 final size:25
Alignment explanation
Indices: 12164--12217 Score: 58
Period size: 26 Copynumber: 2.1 Consensus size: 25
12154 GAAATCTAAG
12164 ATAATTAATAATATTGATTA-TAATA
1 ATAATTAATAATATTGATTACT-ATA
*
12189 ATAATTAAATAA-ATTATATTACTATA
1 ATAATT-AATAATATT-GATTACTATA
12215 ATA
1 ATA
12218 TTTATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 9 0.36
26 15 0.60
27 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
ATAATTAATAATATTGATTACTATA
Found at i:12414 original size:43 final size:40
Alignment explanation
Indices: 12318--12414 Score: 99
Period size: 40 Copynumber: 2.3 Consensus size: 40
12308 TATTATTTAT
* *
12318 TTATTATTATATTAATAATTTTAGTTATATTAAATAATAAG
1 TTATTA-TAAATTAATAATTTTAATTATATTAAATAATAAG
*
12359 -TATAATATAATTAATTAA-TTTAATTATTATTATATATAATAAG
1 TTATTATA-AATTAA-TAATTTTAATTA-TATTA-A-ATAATAAG
12402 TTATTATAAATTA
1 TTATTATAAATTA
12415 TAAATTATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
39 2 0.04
40 16 0.35
41 8 0.17
42 1 0.02
43 13 0.28
44 6 0.13
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (40 bp):
TTATTATAAATTAATAATTTTAATTATATTAAATAATAAG
Found at i:12417 original size:17 final size:17
Alignment explanation
Indices: 12384--12422 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
12374 TAATTTAATT
*
12384 ATTATTATATATAATAA
1 ATTATTATAAATAATAA
* *
12401 GTTATTATAAATTATAA
1 ATTATTATAAATAATAA
12418 ATTAT
1 ATTAT
12423 AAATTTATAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
ATTATTATAAATAATAA
Found at i:13072 original size:12 final size:13
Alignment explanation
Indices: 13049--13077 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
13039 ATATAAGTAA
13049 TATAATTAATTAT
1 TATAATTAATTAT
13062 TATAA-TAATTAT
1 TATAATTAATTAT
13074 TATA
1 TATA
13078 TATATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATAATTAATTAT
Found at i:13089 original size:16 final size:15
Alignment explanation
Indices: 13048--13128 Score: 51
Period size: 15 Copynumber: 5.2 Consensus size: 15
13038 AATATAAGTA
*
13048 ATATAATTAATTATT
1 ATATAATTTATTATT
13063 ATAATAA-TTATTATAT
1 AT-ATAATTTATTAT-T
*
13079 ATATAATTTATGTTATAA
1 ATATAATTTA--TTAT-T
*
13097 ATTATAAATTA-TATT
1 A-TATAATTTATTATT
*
13112 A-ATAGTTTATTATT
1 ATATAATTTATTATT
13126 ATA
1 ATA
13129 ACTTTAAGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
13 6 0.12
14 5 0.10
15 14 0.27
16 13 0.25
18 6 0.12
19 8 0.15
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATAATTTATTATT
Found at i:13206 original size:12 final size:12
Alignment explanation
Indices: 13189--13238 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
13179 CATAGTTATA
13189 ATTATATATATT
1 ATTATATATATT
*
13201 AGTATAT-TGATT
1 ATTATATAT-ATT
*
13213 ATTATAATAAATT
1 ATTAT-ATATATT
13226 ATTATATATATT
1 ATTATATATATT
13238 A
1 A
13239 ACTTAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
11 1 0.03
12 20 0.65
13 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (12 bp):
ATTATATATATT
Found at i:14159 original size:22 final size:21
Alignment explanation
Indices: 14081--14170 Score: 75
Period size: 22 Copynumber: 4.4 Consensus size: 21
14071 ATTTATAATT
*
14081 AATT-ATATATTAATATATTCA
1 AATTAATATA-TAATATATTTA
*
14102 AA--AATAT-TAATAAGATTTA
1 AATTAATATATAAT-ATATTTA
*
14121 AATTTAT-TAT-ATATATTTA
1 AATTAATATATAATATATTTA
14140 TAATTAATATATAATATATTTAA
1 -AATTAATATATAATATATTT-A
14163 AATTAATA
1 AATTAATA
14171 ATTTTAAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
18 4 0.07
19 13 0.24
20 13 0.24
21 8 0.15
22 16 0.29
23 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (21 bp):
AATTAATATATAATATATTTA
Found at i:14612 original size:11 final size:11
Alignment explanation
Indices: 14569--14612 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
14559 TTTTTAATCT
*
14569 TTATATTATTTA
1 TTATATTA-TAA
14581 TTATATTATAA
1 TTATATTATAA
*
14592 TAATATTATAA
1 TTATATTATAA
*
14603 TTATAATATA
1 TTATATTATA
14613 TTTGAATTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTATATTATAA
Found at i:15918 original size:15 final size:16
Alignment explanation
Indices: 15880--15923 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
15870 TAAAATGGTA
15880 TTATTAT-ATTAATAT
1 TTATTATAATTAATAT
15895 TAATATTATAATTAA-AT
1 T--TATTATAATTAATAT
15912 TTATTATAATTA
1 TTATTATAATTA
15924 TCGATTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.46
17 9 0.35
18 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTATAATTAATAT
Found at i:16269 original size:27 final size:26
Alignment explanation
Indices: 16212--16269 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
16202 GTAAAAGATT
*
16212 TAAAAATAAATATATTTACTAAATAA
1 TAAAAATAAATATATTTAATAAATAA
* * * *
16238 GAAAAATATATTATATTTAATAACTTA
1 TAAAAATA-AATATATTTAATAAATAA
16265 TAAAA
1 TAAAA
16270 TTAATAATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (26 bp):
TAAAAATAAATATATTTAATAAATAA
Found at i:16522 original size:16 final size:15
Alignment explanation
Indices: 16484--16524 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
16474 TTTATTTTTG
16484 TTAATTTAATTTAATA
1 TTAA-TTAATTTAATA
16500 TTAATTAATTTAATA
1 TTAATTAATTTAATA
16515 TTTAATTAAT
1 -TTAATTAAT
16525 AAACAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATTAATTTAATA
Found at i:16577 original size:16 final size:16
Alignment explanation
Indices: 16545--16576 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
16535 ATTAATTTTC
16545 ATAGTATTTATTAAAA
1 ATAGTATTTATTAAAA
16561 ATAGTA-TTATTAAAA
1 ATAGTATTTATTAAAA
16576 A
1 A
16577 ACCTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
ATAGTATTTATTAAAA
Found at i:16984 original size:181 final size:182
Alignment explanation
Indices: 16704--17138 Score: 486
Period size: 181 Copynumber: 2.4 Consensus size: 182
16694 TTTGTTCGTG
* * * * *
16704 CAAGCTTATTTGGATTAAAATAATATTAATTTAATAATATTTTG-AAAATTAATAAGTAAGAGAT
1 CAAGCTTATTCGGAATAAAATAATACTAATTTATTAACA-TTTGAAAAATTAATAAGTAAGAGAT
* * * ** ** *
16768 TT-AAAAAATAAATTTGTTTACTAAATCATTTCAAATGGTTAAAATTATTAGAATAATTATCTAT
65 TTAAAAAAATAAATTTATTTACCAAATCAATTCAAATAATTAAAACCATTACAATAATTATCTAT
* *
16832 TTCATATCATT-TTGATCTTTTGTTTAGTCATAAAACAATTGTTTCGGT-CCATA
130 TTCAAATCATTCTT-ACCTTTTGTTTAGTCATAAAACAATTGTTT-GGTACCATA
* * * *
16885 CAAGCTTATTCAGAATAAATTAATACTAATTTATTAACATTTGAAAAATTAATATGAAAGAGATT
1 CAAGCTTATTCGGAATAAAATAATACTAATTTATTAACATTTGAAAAATTAATAAGTAAGAGATT
*** *
16950 TAAAAAAATAAATTTATTTACCAAA-CAATTCAAATAATTATGGCCATTTCAATAATTATCTATT
66 TAAAAAAATAAATTTATTTACCAAATCAATTCAAATAATTAAAACCATTACAATAATTATCTATT
** * * ** ** *
17014 TCAAATTGTTCTTACCTTTTGTTTGGTGATATGACAATTGTTTTTTATCATA
131 TCAAATCATTCTTACCTTTTGTTTAGTCATAAAACAATTGTTTGGTACCATA
*
17066 CAAGCTTATTCGGAATAAAATAATACTAATTTATTAATC-TTTCAAAAAATTAATAAGTAAGAGA
1 CAAGCTTATTCGGAATAAAATAATACTAATTTATTAA-CATTT-GAAAAATTAATAAGTAAGAGA
17130 TTTAAAAAA
64 TTTAAAAAA
17139 CAAATCTGTT
Statistics
Matches: 211, Mismatches: 37, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
180 5 0.02
181 155 0.73
182 51 0.24
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (182 bp):
CAAGCTTATTCGGAATAAAATAATACTAATTTATTAACATTTGAAAAATTAATAAGTAAGAGATT
TAAAAAAATAAATTTATTTACCAAATCAATTCAAATAATTAAAACCATTACAATAATTATCTATT
TCAAATCATTCTTACCTTTTGTTTAGTCATAAAACAATTGTTTGGTACCATA
Found at i:17328 original size:18 final size:17
Alignment explanation
Indices: 17305--17355 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
17295 AATTATTATA
17305 ATATATTATTAATTAAAT
1 ATATATTATTAATT-AAT
*
17323 ATATATAATTAAATTAAT
1 ATATATTATT-AATTAAT
*
17341 ATATTAATATTAATT
1 ATA-TATTATTAATT
17356 TATAATCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 19 0.68
19 9 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTATTAATTAAT
Found at i:17342 original size:14 final size:14
Alignment explanation
Indices: 17293--17368 Score: 54
Period size: 14 Copynumber: 5.5 Consensus size: 14
17283 TAATAATTTA
*
17293 TAAATTATTATAA-
1 TAAATTAATATAAT
*
17306 TATATT-AT-TAAT
1 TAAATTAATATAAT
17318 TAAA-TATATATAAT
1 TAAATTA-ATATAAT
17332 TAAATTAATAT-AT
1 TAAATTAATATAAT
17345 TAATATTAATTTATAAT
1 TAA-ATTAA--TATAAT
*
17362 CAAATTA
1 TAAATTA
17369 TAATTATCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 15
0.72 0.06 0.22
Matches are distributed among these distances:
11 4 0.08
12 4 0.08
13 12 0.24
14 17 0.34
15 2 0.04
16 7 0.14
17 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (14 bp):
TAAATTAATATAAT
Found at i:17367 original size:30 final size:34
Alignment explanation
Indices: 17303--17368 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 34
17293 TAAATTATTA
* *
17303 TAATATATTATTAATTAAATATATATAATTAAAT
1 TAATATATTAATAATTAAATATATATAATCAAAT
17337 TAATATATTAAT-ATT-AAT-T-TATAATCAAAT
1 TAATATATTAATAATTAAATATATATAATCAAAT
17367 TA
1 TA
17369 TAATTATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 12 0.40
31 1 0.03
32 3 0.10
33 3 0.10
34 11 0.37
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (34 bp):
TAATATATTAATAATTAAATATATATAATCAAAT
Found at i:17797 original size:180 final size:177
Alignment explanation
Indices: 17600--18165 Score: 543
Period size: 180 Copynumber: 3.2 Consensus size: 177
17590 AAATTTTAAC
* * *
17600 GATTTGAAATTGATAATTGTTCAATAGTCATAATTATTTGAACTGGTTTGGTAAACATATTTATT
1 GATTTGAAATAGATAATTATTCAATAGTCATAATTATTTGAACTGGTTTGGTAAACAGATTTATT
* * * *
17665 GTTTAAATTTGTTACCTATTATTTTTGAAATATTAATCAATTAGTATTATTTTATTTTAAATAAG
66 -TTTAAATTTCTTA-CTATTATTTTCGAAATATTAATAAATTAGTATTATTTTATTCTAAATAAG
** * * *
17730 CTTGTATGATAAAAAAATAATTGTATTATGACAAAATAAAAGGTCATAAT
129 CTTGTATGATAATGAAACAATTGTTTTATGAC-AAATAAAAGGTCAAAAT
* *
17780 GATTTGAAATAGATAATTATTCAA-ATGATCATAATTATTTTAACTGATTTGGTAAACAGATTTA
1 GATTTGAAATAGATAATTATTCAATA-G-TCATAATTATTTGAACTGGTTTGGTAAACAGATTTA
* ** * **
17844 TTTTTAAAATTTCTTA-T-TAATTTAGGAAATATTAATAAATTAGTATTATTTTATTCCATCTAA
64 TTTTT-AAATTTCTTACTATTATTTTCGAAATATTAATAAATTAGTATTATTTTATTCTAAATAA
* * *
17907 GCTTATAT--TAACTGAAACAATTGTTTTATGACAATTAAAAGGTTAAAAT
128 GCTTGTATGATAA-TGAAACAATTGTTTTATGACAAATAAAAGGTCAAAAT
* * * * * * * * * * ** *
17956 GTTTTTAAATAAACAATTGTCTAAATAATTATAACTATTTGAACTTGTTCAGTAAATAGATTTAT
1 GATTTGAAATAGATAATTAT-TCAATAGTCATAATTATTTGAACTGGTTTGGTAAACAGATTTA-
* * * * * *
18021 TTTTTAAATCTCTTTCTTATTAATTTTCCAAATGTTAATAAATTAGTATTAATTTATTCTGAATA
64 TTTTTAAATTTCTTAC-TATT-ATTTTCGAAATATTAATAAATTAGTATTATTTTATTCTAAATA
* * *
18086 AGCTTGTATGA-ATTGAAACAATTGTTTTATGACTAAA-AAATGGTCAAAAC
127 AGCTTGTATGATAATGAAACAATTGTTTTATGAC-AAATAAAAGGTCAAAAT
* *
18136 GATTTGAAGTATATAATTATTCTAATAGTC
1 GATTTGAAATAGATAATTATTC-AATAGTC
18166 TTAACCATTT
Statistics
Matches: 307, Mismatches: 64, Indels: 30
0.77 0.16 0.07
Matches are distributed among these distances:
176 68 0.22
177 24 0.08
178 47 0.15
179 4 0.01
180 117 0.38
181 47 0.15
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.43
Consensus pattern (177 bp):
GATTTGAAATAGATAATTATTCAATAGTCATAATTATTTGAACTGGTTTGGTAAACAGATTTATT
TTTAAATTTCTTACTATTATTTTCGAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCT
TGTATGATAATGAAACAATTGTTTTATGACAAATAAAAGGTCAAAAT
Found at i:18715 original size:20 final size:20
Alignment explanation
Indices: 18690--18727 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
18680 ATTTATATCC
*
18690 TTAAATTGATAATTTTAAAT
1 TTAAATTGATAATATTAAAT
*
18710 TTAAATTGTTAATATTAA
1 TTAAATTGATAATATTAA
18728 TAATAGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TTAAATTGATAATATTAAAT
Found at i:18743 original size:17 final size:16
Alignment explanation
Indices: 18720--18763 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
18710 TTAAATTGTT
18720 AATATTAATAATAG-AA
1 AATATTAATAAT-GTAA
18736 ATATATTAAT-ATGTAA
1 A-ATATTAATAATGTAA
18752 AATATTAATAAT
1 AATATTAATAAT
18764 TAAGATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
17 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (16 bp):
AATATTAATAATGTAA
Found at i:18761 original size:23 final size:22
Alignment explanation
Indices: 18718--18766 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
18708 ATTTAAATTG
18718 TTAATATTAATAATAGAAATATA
1 TTAATATTAATAATAGAAATA-A
**
18741 TTAATATGTAA-AATATTAATAA
1 TTAATAT-TAATAATAGAAATAA
18763 TTAA
1 TTAA
18767 GATTGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 15 0.65
24 3 0.13
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (22 bp):
TTAATATTAATAATAGAAATAA
Found at i:19033 original size:26 final size:25
Alignment explanation
Indices: 19000--19067 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
18990 ACTAAATAAA
19000 TATTTTATTAATTATTCAAACAAAAT
1 TATTTTATTAATTATTCAAA-AAAAT
* * *
19026 TATTTTATCAA-TAATCCAAAAAAT
1 TATTTTATTAATTATTCAAAAAAAT
*
19050 TAATCATTATTAATTATT
1 T-AT-TTTATTAATTATT
19068 AATAATGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
24 6 0.18
25 8 0.24
26 16 0.48
27 3 0.09
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (25 bp):
TATTTTATTAATTATTCAAAAAAAT
Found at i:19236 original size:12 final size:12
Alignment explanation
Indices: 19181--19241 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
19171 TAATAAGGTA
19181 AATATTTATAATT
1 AATATTT-TAATT
*
19194 AATATTTAAATT
1 AATATTTTAATT
* *
19206 ATAAATATTAA-T
1 A-ATATTTTAATT
*
19218 AATTATTTTAATG
1 AA-TATTTTAATT
19231 AATATTTTAAT
1 AATATTTTAAT
19242 AAATTAATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
11 1 0.03
12 22 0.58
13 15 0.39
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
AATATTTTAATT
Found at i:19256 original size:38 final size:38
Alignment explanation
Indices: 19183--19258 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
19173 ATAAGGTAAA
* * *
19183 TATTTATAATTAATATTTAAATTATAAATATTAATAAT
1 TATTTATAATGAATATTTAAATAATAAATAATAATAAT
* *
19221 TATTT-TAATGAATATTTTAATAAATTAATAATAATAAT
1 TATTTATAATGAATATTTAAAT-AATAAATAATAATAAT
19259 AATAATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 14 0.44
38 18 0.56
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (38 bp):
TATTTATAATGAATATTTAAATAATAAATAATAATAAT
Found at i:19264 original size:23 final size:22
Alignment explanation
Indices: 19238--19284 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
19228 ATGAATATTT
19238 TAATAAATTAATAATAATAATAA
1 TAATAAATTAATAATAATAA-AA
* * *
19261 TAATATATTATTACTAATAAAA
1 TAATAAATTAATAATAATAAAA
19283 TA
1 TA
19285 TATAGATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
TAATAAATTAATAATAATAAAA
Found at i:19947 original size:21 final size:20
Alignment explanation
Indices: 19901--19939 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
19891 ATCTCAATTT
*
19901 ATAATTATAATATAGTTACA
1 ATAATTATAATATAATTACA
19921 ACTAATTATAATATAATTA
1 A-TAATTATAATATAATTA
19940 TTAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
ATAATTATAATATAATTACA
Found at i:19971 original size:35 final size:35
Alignment explanation
Indices: 19923--20020 Score: 107
Period size: 35 Copynumber: 2.9 Consensus size: 35
19913 TAGTTACAAC
*
19923 TAATTATAATATAATTATTAATAATAACTATA-AA
1 TAATTATATTATAATTATTAATAATAACTATATAA
*
19957 TTAATTATATTATAATAATTAAT-A-AACTATATAA
1 -TAATTATATTATAATTATTAATAATAACTATATAA
* *
19991 TAATT-TATTATTA-TATTAAAAATAATCTAT
1 TAATTATATTATAATTATTAATAATAA-CTAT
20021 TTCAAATCAT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
31 5 0.09
32 8 0.15
33 14 0.26
34 7 0.13
35 20 0.37
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (35 bp):
TAATTATATTATAATTATTAATAATAACTATATAA
Found at i:20119 original size:25 final size:25
Alignment explanation
Indices: 20085--20167 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
20075 TTAAAATTAA
*
20085 TAATTTTAATAAATAATTAATATAT
1 TAATTATAATAAATAATTAATATAT
* * *
20110 TAATTATAAT-TATTATTTATAT-T
1 TAATTATAATAAATAATTAATATAT
20133 TCAAATTAGATAATAAATAATTATATATAGT
1 T--AATT--ATAATAAATAATTA-ATATA-T
20164 TAAT
1 TAAT
20168 CAATTATTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
23 2 0.05
24 9 0.21
25 13 0.30
27 5 0.12
28 5 0.12
29 7 0.16
31 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (25 bp):
TAATTATAATAAATAATTAATATAT
Found at i:20512 original size:21 final size:21
Alignment explanation
Indices: 20473--20512 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
20463 ATATTGTTAA
*
20473 TTATAATTTATAATATAATAT
1 TTATAATATATAATATAATAT
20494 TTATAATATATTAAT-TAAT
1 TTATAATATA-TAATATAAT
20513 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATATAATATAATAT
Found at i:20698 original size:29 final size:31
Alignment explanation
Indices: 20666--20739 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 31
20656 ATGATTTAAT
20666 AATTTATATA-TA-ATTATAAATAAT-TTTGA
1 AATTTATATATTATATTA-AAATAATATTTGA
20695 AATTTA-ATTATTATATTAAAATAATATTTGA
1 AATTTATA-TATTATATTAAAATAATATTTGA
*
20726 TA-TTATAT-TTATAT
1 AATTTATATATTATAT
20740 ATAGTTAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
28 1 0.03
29 14 0.36
30 13 0.33
31 11 0.28
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (31 bp):
AATTTATATATTATATTAAAATAATATTTGA
Found at i:20741 original size:31 final size:30
Alignment explanation
Indices: 20672--20741 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 30
20662 TAATAATTTA
20672 TATATAATTATAAATAATTTTGAAATTTAAT
1 TATAT-ATTATAAATAATTTTGAAATTTAAT
* *
20703 TATTATATTA-AAATAATATTTGATATTATATT
1 TA-TATATTATAAATAAT-TTTGAAATT-TAAT
20735 TATATAT
1 TATATAT
20742 AGTTAAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
30 7 0.21
31 19 0.56
32 8 0.24
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (30 bp):
TATATATTATAAATAATTTTGAAATTTAAT
Found at i:21590 original size:13 final size:14
Alignment explanation
Indices: 21572--21606 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
21562 ATTCTAATTT
21572 AATAATATTT-AAA
1 AATAATATTTAAAA
21585 AATAATATTTAAAA
1 AATAATATTTAAAA
21599 AATAATAT
1 AATAATAT
21607 GCTTCATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
AATAATATTTAAAA
Found at i:21811 original size:18 final size:18
Alignment explanation
Indices: 21770--21814 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
21760 TAAATTATGT
*
21770 ATTAA-AATT-AATTATA
1 ATTAATAATTAAATAATA
21786 A-TATATAATTAAATAATA
1 ATTA-ATAATTAAATAATA
21804 ATTAATAATTA
1 ATTAATAATTA
21815 TATTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
15 2 0.08
16 2 0.08
17 4 0.17
18 14 0.58
19 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTAATAATTAAATAATA
Found at i:22119 original size:11 final size:11
Alignment explanation
Indices: 22088--22127 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
22078 TTTTAATATT
22088 ATTATATAATA
1 ATTATATAATA
22099 A-TAT-TAATA
1 ATTATATAATA
22108 ATTATATAATA
1 ATTATATAATA
22119 ATTATATAA
1 ATTATATAA
22128 ATTGATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 6 0.22
10 6 0.22
11 15 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATTATATAATA
Found at i:22124 original size:29 final size:30
Alignment explanation
Indices: 22092--22153 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 30
22082 AATATTATTA
22092 TATAATAATATTAATAATTATAT-AA-TAAT
1 TATAATAA-ATTAATAATTATATAAATTAAT
* *
22121 TAT-ATAAATTGATTATTATATAAATTAAT
1 TATAATAAATTAATAATTATATAAATTAAT
22150 TATA
1 TATA
22154 TTATTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 12 0.43
28 6 0.21
29 10 0.36
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (30 bp):
TATAATAAATTAATAATTATATAAATTAAT
Found at i:22130 original size:20 final size:20
Alignment explanation
Indices: 22069--22120 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
22059 CTAAATATCA
*
22069 TATATAAT-ATTTTAATATTAT
1 TATATAATAATATTAATA--AT
22090 TATATAATAATATTAATAAT
1 TATATAATAATATTAATAAT
22110 TATATAATAAT
1 TATATAATAAT
22121 TATATAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 13 0.45
21 8 0.28
22 8 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATATAATAATATTAATAAT
Found at i:22144 original size:16 final size:16
Alignment explanation
Indices: 22085--22152 Score: 63
Period size: 16 Copynumber: 4.3 Consensus size: 16
22075 ATATTTTAAT
22085 ATTATTATAT-AA-TA
1 ATTATTATATAAATTA
22099 A-TATTA-ATAATTATATA
1 ATTATTATATAA--AT-TA
* *
22116 ATAATTATATAAATTG
1 ATTATTATATAAATTA
22132 ATTATTATATAAATTA
1 ATTATTATATAAATTA
22148 ATTAT
1 ATTAT
22153 ATTATTAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
12 2 0.05
13 6 0.14
14 1 0.02
15 1 0.02
16 20 0.47
17 5 0.12
18 4 0.09
19 4 0.09
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (16 bp):
ATTATTATATAAATTA
Found at i:22162 original size:16 final size:16
Alignment explanation
Indices: 22081--22162 Score: 53
Period size: 16 Copynumber: 4.9 Consensus size: 16
22071 TATAATATTT
22081 TAATATTATT-ATATAA
1 TAATATTATTAAT-TAA
*
22097 TAATATTAATAATTATA
1 TAATATTATTAATTA-A
*
22114 TAATAATTATATAAATTGA
1 TAAT-ATTAT-T-AATTAA
22133 T--TATTATATAAATTAA
1 TAATATTAT-T-AATTAA
*
22149 TTATATTATTAATT
1 TAATATTATTAATT
22163 TAAAATATAC
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
16 29 0.53
17 9 0.16
18 10 0.18
19 3 0.05
20 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (16 bp):
TAATATTATTAATTAA
Found at i:22969 original size:20 final size:20
Alignment explanation
Indices: 22927--22970 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
22917 TAACATAATA
22927 ATAATAATAAAATTTAATGTT
1 ATAATAATAAAA-TTAATGTT
*
22948 ATAATATATAAAA-TAATTTT
1 ATAATA-ATAAAATTAATGTT
22968 ATA
1 ATA
22971 TAAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 6 0.29
22 6 0.29
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATAATAAAATTAATGTT
Found at i:22970 original size:15 final size:15
Alignment explanation
Indices: 22952--22984 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
22942 AATGTTATAA
*
22952 TATATAAAATAATTT
1 TATATAAAATAAATT
22967 TATATAAAATAAATT
1 TATATAAAATAAATT
22982 TAT
1 TAT
22985 TTTATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATAAAATAAATT
Found at i:22978 original size:20 final size:20
Alignment explanation
Indices: 22955--22992 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22945 GTTATAATAT
22955 ATAAAATAATTTTATATAAA
1 ATAAAATAATTTTATATAAA
* *
22975 ATAAATTTATTTTATATA
1 ATAAAATAATTTTATATA
22993 TTTTTAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAAATAATTTTATATAAA
Found at i:23020 original size:14 final size:14
Alignment explanation
Indices: 22997--23046 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
22987 TATATATTTT
22997 TAAT-TAATTATTA
1 TAATATAATTATTA
*
23010 TAA-ATATATTATAA
1 TAATATA-ATTATTA
*
23024 TAATATAATTATTT
1 TAATATAATTATTA
23038 TATATATAA
1 TA-ATATAA
23047 ATAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.17
14 16 0.53
15 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTATTA
Found at i:23030 original size:19 final size:19
Alignment explanation
Indices: 23008--23063 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
22998 AATTAATTAT
23008 TATAAATATATTATAATAA
1 TATAAATATATTATAATAA
* *
23027 TATAATTATTTTATATATAA
1 TATAAATATATTATA-ATAA
*
23047 -AT-AATTTA-TATAATAA
1 TATAAATATATTATAATAA
23063 T
1 T
23064 TTATATTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 3 0.10
19 15 0.50
20 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATAAATATATTATAATAA
Found at i:23046 original size:15 final size:15
Alignment explanation
Indices: 23026--23064 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
23016 TATTATAATA
*
23026 ATATAATTATTTTAT
1 ATATAATTAATTTAT
*
23041 ATATAAATAATTTAT
1 ATATAATTAATTTAT
23056 ATAATAATT
1 AT-ATAATT
23065 TATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTAATTTAT
Found at i:23063 original size:12 final size:13
Alignment explanation
Indices: 23040--23069 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
23030 AATTATTTTA
23040 TATATAAATAATT
1 TATATAAATAATT
23053 TATAT-AATAATT
1 TATATAAATAATT
23065 TATAT
1 TATAT
23070 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:23273 original size:31 final size:30
Alignment explanation
Indices: 23223--23293 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 30
23213 ATAGTAATTA
* *
23223 ATAATTTATTTGATAAATTATATATATTAT
1 ATAATTTATTTGATAAATTATAGATAATAT
*
23253 A-AATTTATATTTATATAATTATAGATAATAT
1 ATAATTTAT-TTGATA-AATTATAGATAATAT
23284 ATAATTTATT
1 ATAATTTATT
23294 AATTTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 7 0.20
30 6 0.17
31 15 0.43
32 7 0.20
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (30 bp):
ATAATTTATTTGATAAATTATAGATAATAT
Found at i:24032 original size:19 final size:20
Alignment explanation
Indices: 24010--24048 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
24000 GAAAAGCAAC
* *
24010 AATTAATTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
24029 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
24049 TTATTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:24760 original size:19 final size:20
Alignment explanation
Indices: 24730--24783 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
24720 AATAAATATT
24730 TAAATAATAATAATT-ATTTA
1 TAAATAATAAT-ATTAATTTA
24750 TAAAT-ATAATATTAATTTA
1 TAAATAATAATATTAATTTA
24769 T-AATAATAA-ATTAAT
1 TAAATAATAATATTAAT
24784 ATTTATACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
18 12 0.38
19 15 0.47
20 5 0.16
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAATAATAATATTAATTTA
Found at i:25902 original size:17 final size:15
Alignment explanation
Indices: 25884--25912 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25874 TACATTAGTT
25884 ATTATT-AAATATAA
1 ATTATTAAAATATAA
25898 ATTATTAAAATATAA
1 ATTATTAAAATATAA
25913 CTAAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:25997 original size:9 final size:9
Alignment explanation
Indices: 25985--26034 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
25975 ATTAATAATA
25985 ATAATATTT
1 ATAATATTT
25994 ATAATATTT
1 ATAATATTT
*
26003 AAAATA-TT
1 ATAATATTT
26011 ATAAT-TCTT
1 ATAATAT-TT
26020 AATAAT-TTT
1 -ATAATATTT
26029 ATAATA
1 ATAATA
26035 AGATTATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
8 11 0.31
9 18 0.51
10 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (9 bp):
ATAATATTT
Found at i:26008 original size:18 final size:20
Alignment explanation
Indices: 25983--26034 Score: 69
Period size: 18 Copynumber: 2.9 Consensus size: 20
25973 TAATTAATAA
25983 TAATAATATTTATAATAT-T
1 TAATAATATTTATAATATCT
26002 TAA-AATA-TTATAAT-TCT
1 TAATAATATTTATAATATCT
26019 TAATAAT-TTTATAATA
1 TAATAATATTTATAATA
26035 AGATTATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
16 1 0.03
17 11 0.38
18 14 0.48
19 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATAATATTTATAATATCT
Found at i:26421 original size:28 final size:28
Alignment explanation
Indices: 26390--26447 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
26380 TAAATATTTA
*
26390 ATAGTTAATAATATTT-ATAATAATAATT
1 ATAGTTAACAATATTTGA-AATAATAATT
* *
26418 ATAGTTAACATTATTTGAAATAATTATT
1 ATAGTTAACAATATTTGAAATAATAATT
26446 AT
1 AT
26448 TAAATAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (28 bp):
ATAGTTAACAATATTTGAAATAATAATT
Found at i:26454 original size:14 final size:14
Alignment explanation
Indices: 26435--26474 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
26425 ACATTATTTG
26435 AAATAATTATTATT
1 AAATAATTATTATT
26449 AAATAATTATTA-T
1 AAATAATTATTATT
26462 AAAT-ATT-TTATT
1 AAATAATTATTATT
26474 A
1 A
26475 GTTTAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.12
12 5 0.20
13 5 0.20
14 12 0.48
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATAATTATTATT
Found at i:26639 original size:15 final size:14
Alignment explanation
Indices: 26553--26664 Score: 65
Period size: 15 Copynumber: 7.9 Consensus size: 14
26543 TTATTATATA
26553 TTATAATTATATAA-
1 TTATAA-TATATAAT
26567 -TA-AATATATAAT
1 TTATAATATATAAT
26579 TATATTAAT-TATAAT
1 T-TA-TAATATATAAT
* *
26594 TTAATAAAAACTAAAAT
1 TT-AT-AATA-TATAAT
*
26611 TTATAA-CT-TAAT
1 TTATAATATATAAT
26623 TTATAATATAATAAT
1 TTATAATAT-ATAAT
*
26638 TTATTATATATAAT
1 TTATAATATATAAT
*
26652 TTAAGAATATATA
1 TT-ATAATATATA
26665 TTGATTATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 25
0.70 0.07 0.23
Matches are distributed among these distances:
11 7 0.09
12 11 0.14
13 4 0.05
14 11 0.14
15 32 0.42
16 5 0.06
17 7 0.09
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.46
Consensus pattern (14 bp):
TTATAATATATAAT
Found at i:27083 original size:28 final size:28
Alignment explanation
Indices: 27052--27109 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
27042 TAATTATTTA
*
27052 ATAATAATTATT-TCAAATAATGTTAACT
1 ATAATAATTATTAT-AAATAATATTAACT
* *
27080 ATAATTATTATTATAAATATTATTAACT
1 ATAATAATTATTATAAATAATATTAACT
27108 AT
1 AT
27110 TAAATATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (28 bp):
ATAATAATTATTATAAATAATATTAACT
Found at i:27150 original size:56 final size:56
Alignment explanation
Indices: 27080--27186 Score: 132
Period size: 56 Copynumber: 1.9 Consensus size: 56
27070 AATGTTAACT
* *
27080 ATAATTATTATTATAA-ATATTAT-TAACTATTAAATATTTAAG-ATTCAATATATATA
1 ATAATTATTATTATAATAT-TTATATAAATATT-AATAATTAAGTATT-AATATATATA
27136 ATAA-TATTAATTATAATATTTATATAAATATTAATAATTAAGTATTAATAT
1 ATAATTATT-ATTATAATATTTATATAAATATTAATAATTAAGTATTAATAT
27187 CCAGTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
55 4 0.09
56 29 0.64
57 12 0.27
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (56 bp):
ATAATTATTATTATAATATTTATATAAATATTAATAATTAAGTATTAATATATATA
Found at i:27255 original size:22 final size:21
Alignment explanation
Indices: 27230--27270 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
27220 ATTTCATATT
27230 TAATTATTTATAATATTTATAA
1 TAATTATTTATAA-ATTTATAA
27252 TAATTATTTATAAATTTAT
1 TAATTATTTATAAATTTAT
27271 TGTATCTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATTATTTATAAATTTATAA
Found at i:27630 original size:180 final size:180
Alignment explanation
Indices: 27323--27743 Score: 398
Period size: 180 Copynumber: 2.3 Consensus size: 180
27313 AGTAAGAGAT
* ** * *** * *
27323 TTAAAAAGTAAATCTGTTTACCAAACCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATT
1 TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
* * * * *
27388 TCAAATAATTATAATCTTTTATTTTGTCATCAAATAATTTGTTCTATTTACACTATTTATTCAAA
66 TCAAATAATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTACACAACTTATTCAAA
* * *
27453 ATAAAATAATGCAAATTTAATAATATTCCAAAACTTAATAACCAAAAAAA
131 ATAAAATAATACAAATTTAATAATATTCAAAAAATTAATAACCAAAAAAA
** *
27503 TTAAAAAATAAATCTAATTACTGAACCAATTCAAATAGTTAAAACTATATAAATGATTATCTATT
1 TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
** * * * * ** *
27568 TCAAATTGTTATGACCTTTTCTTTTGTCATAAAACAA-TTGTTTTGTTTGTACAAGCTTATTCAT
66 TCAAATAATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTACACAA-CTTATTCAA
* * * ** * **
27632 ATTAAAATAATACAAATTTCATAATATTTAAAAAATTAATAAGTAAGATATT
130 AATAAAATAATACAAATTTAATAATATTCAAAAAATTAATAACCAA-AAAAA
* * * * * *
27684 TTAAAAAATAAAT-TTATCTATCAAATCATTTCAAATGGTTAAGACTAT-TAGAATAATTAT
1 TTAAAAAATAAATCTAAT-TACCAAACCAATTCAAATAGTTAAAACTATATA-AATAATTAT
27744 ATACATCAAA
Statistics
Matches: 191, Mismatches: 46, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
179 12 0.06
180 133 0.70
181 46 0.24
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.40
Consensus pattern (180 bp):
TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
TCAAATAATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTACACAACTTATTCAAA
ATAAAATAATACAAATTTAATAATATTCAAAAAATTAATAACCAAAAAAA
Found at i:29658 original size:356 final size:353
Alignment explanation
Indices: 28841--30138 Score: 974
Period size: 356 Copynumber: 3.6 Consensus size: 353
28831 AATTGTTTCA
* * * **
28841 GTTCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATTAATATTCCAAAAATTAATAAGAA
1 GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAA-TAATAACTA
* * ** * * * * * *
28906 AGTGATTT-AAAAATGAATCTATTTG--T-GAAATTAGTTCAAATAATTATG-GTCATTTCAACA
65 AGGGATTTAAAAAAT-AA---ATTTGCCTCCAAACCAATTCAAATAGTTAAGACT-ATATGAACA
* * *
28966 ATTATCTATTTCAAATCGTTATCACATTTTGTTTGGTCATATAACAATTTTTTTA-TCATACATG
125 ATTATCTATTTCAAATCGTTATGACATTTTGTTT-GTCATAAAACAATTTTTCTATTCATACA-G
* * * *
29030 ATTATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAGAGATTTAAAAAAT
188 ATTATTTGAATTAAAATAATACTAATTTATTAATATTTCAAAAAATAATAAGAGATTTAAAAAAT
* * * * *
29095 GAATTTGTTTATCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTTTATACTTCAAATCAT
253 GAATTTGTTTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTATATACTTCAAATCAT
*
29160 TTTAACCTTTTGTTATGTCATTAAACAATTATTTAT
318 TTTAACCTTTTGTTATGTCATTAAACAAATATTTAT
29196 GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTA
1 GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAA-TAATAACTA
** * *
29261 AGGGATTTAAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAGACTATATGAATAATTA
65 AGGGATTTAAAAAATAAATTTGCCT-CCAAACCAATTCAAATAGTTAAGACTATATGAACAATTA
* * *
29326 TCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATTTTCTCAATTCATACTAGCTT
129 TCTATTTCAAATCGTTATGACATTTTGT-TTGTCATAAAACAATTTT-TCTATTCATAC-AGATT
* *
29391 ATTCGAATTAAAATAA-ACTGAATTTATTAATATTTCAAAAAATAATAAGTAATAGTTTAAAAAA
191 ATTTGAATTAAAATAATACT-AATTTATTAATATTTCAAAAAATAATAAG--AGA-TTTAAAAAA
* *
29455 T-AATTTTGTTTACCTAACCAATTCAAAAAATTAT-ACTATTTGAACAATTATATATTTCAAATC
252 TGAA-TTTGTTTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTATATACTTCAAATC
* * * * *
29518 ATTATT-ACTTTTTGTTTTGTCA-TACGACAAATGTTTTT
316 ATT-TTAACCTTTTGTTATGTCATTA-AACAAATATTTAT
* * * ** * * *
29556 GTTGATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTC-AAAA-AATAA-TAA
1 GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATAATAACTAA
* * * * * * * *
29618 GTGATTTAGACAATAAATCTATGCCT-CAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTA
66 GGGATTTAAAAAATAAAT-T-TGCCTCCAAACCAATTCAAATAGTTAAGACTATATGAACAATTA
* * * * * *
29682 TTTATTTCCAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAGTTT
129 TCTATTTCAAATCGTTATGACATTTTG-TTTGTCATAAAACAATT-TTTCTATTCATAC-AGATT
* ** * * * *
29747 ATTTGCATTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAGTAAAAAATTTTAAAAA
191 ATTTGAATTAAAATAATACTAATTTATTAATA-TTT--CAAAAAATAA-TAAGAGATTTAAAAAA
* * * * * * * *
29812 T--A--TGTTT-CCCACACTAGA-TCAAATAATCATGACAATTTGAATAATTATCTATTTCAAAT
252 TGAATTTGTTTACCGA-ACCA-ATTCAAAAAATTATGACTATTTGAACAATTATATACTTCAAAT
* * * * * ** *
29871 CGTTATGACCTTTTGATT-TGTCATAAAAGAGTTGTTT-T
315 CATTTTAACCTTTTG-TTATGTCATTAAACAAATATTTAT
* * * *
29909 AGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-T
1 -GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAA-TAATAACT
* * * ** * * * * * * * * *
29973 AAAGAGATTTAAAAAATGACTTTGTTTACTAAACAAATTTAAATAATTAGGATTGTTTGAATAAT
64 -AAGGGATTTAAAAAATAAATTTGCCT-CCAAACCAATTCAAATAGTTAAGACTATATGAACAAT
* * * * * * * * *
30038 TATCTATTTGAAATAGCTATAACCTTTTGTTTTATAATAAAAGAATTTTTTCTGTTCAT-CTAAG
127 TATCTATTTCAAATCGTTATGACATTTTG-TTTGTCATAAAACAA-TTTTTCTATTCATAC--AG
* * *
30102 CTTATTTTGAA-TAAAATAACACAAATTTATTAATATT
188 ATTA-TTTGAATTAAAATAATACTAATTTATTAATATT
30139 AAAACAATTA
Statistics
Matches: 767, Mismatches: 134, Indels: 82
0.78 0.14 0.08
Matches are distributed among these distances:
352 8 0.01
353 20 0.03
354 91 0.12
355 76 0.10
356 203 0.26
357 41 0.05
358 168 0.22
359 21 0.03
360 102 0.13
361 37 0.05
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (353 bp):
GTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATAATAACTAA
GGGATTTAAAAAATAAATTTGCCTCCAAACCAATTCAAATAGTTAAGACTATATGAACAATTATC
TATTTCAAATCGTTATGACATTTTGTTTGTCATAAAACAATTTTTCTATTCATACAGATTATTTG
AATTAAAATAATACTAATTTATTAATATTTCAAAAAATAATAAGAGATTTAAAAAATGAATTTGT
TTACCGAACCAATTCAAAAAATTATGACTATTTGAACAATTATATACTTCAAATCATTTTAACCT
TTTGTTATGTCATTAAACAAATATTTAT
Found at i:29740 original size:537 final size:532
Alignment explanation
Indices: 28818--30001 Score: 1249
Period size: 537 Copynumber: 2.2 Consensus size: 532
28808 ATTATGATGT
* * * *
28818 TTTGTCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATT
1 TTTGTCATAAAACAATTGTTTCAATTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATT
* * * * * * **** ** *
28883 AATATTCCAAAAATTAATAAGAAAGTGATTT-AAAAATGAA-TCTATTTGTGAAATTAGTTCAAA
66 AATAATCCAAAAAATAATAATAAAGAGATTTAAAAAAT-AACTTTGTTTACCTAACCAATTCAAA
* ** * * *
28946 TAATTATGGTCATTTCAACAATTATCTATTTCAAATCGTTATCACATTTTGTTTGGTCATATAAC
130 AAATTATACT-ATTTCAACAATTATATATTTCAAATCATTATCACATTTTGTTTGGTCATACAAC
* * * * *
29011 AATTTTTTTATCATACATGATTATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATT
194 AATTTTTTTATCATACAAGATTATTCGAAATAAAATAATAATAATCTATTAATATTTCAAAAAAT
* * * ** *
29076 AATAAGAGATTTAAAAAATGAATTTGTTTATCGAACCAGTTCAAATAGTTATGACTATTTGAACA
259 AATAAGAGATTTAAAAAATAAATCTATGCATCAAACCAGTTCAAATAGTTATGACTATTTGAACA
* * *
29141 ATTTTATACTTCAAATCATTTTAACCTTTTGTTATGTCATTAAACAATTATTTATGTTCATACAA
324 ATTTTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTATATTCATACAA
***
29206 GCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTTAA
389 GCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTAAAAAATTTAA
* * * *
29271 AAAATAAATTTGTTTGCCGA-ACCA-ATTCAAATAGTTAAGACTATATGAATAATTATCTATTTC
454 AAAAT--A--TGTTT-CCCACACCAGA-TCAAATAATCAAGACAATATGAATAATTATCTATTTC
29334 AAATCGTTATGACCTTTTG-
513 AAATCGTTATGACCTTTTGA
* *
29353 TCTTGTCATAAAACAATT-TTCTCAATTCATACT-AGCTTATTCGAATTAAAATAA-ACTGAATT
1 T-TTGTCATAAAACAATTGTT-TCAATTCATA-TAAGCTTATTCAAAATAAAATAATACT-AATT
* * * *
29415 TATTAATATTTCAAAAAATAATAAGT-AATAG-TTTAAAAAATAATTTTGTTTACCTAACCAATT
62 TATTAATAATCCAAAAAATAATAA-TAAAGAGATTTAAAAAATAACTTTGTTTACCTAACCAATT
* * * *
29478 CAAAAAATTATACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATAC
126 CAAAAAATTATACTATTTCAACAATTATATATTTCAAATCATTATCACATTTTGTTTGGTCATAC
* * * * * * *
29543 GACAAATGTTTTTGT-TGATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTCA
191 AAC-AAT-TTTTT-TATCATACAAGATTATTCGAAATAAAATAATAATAATCTATTAATATTTCA
* * * * *
29607 AAAAATAATAAGTGATTTAGACAATAAATCTATGCCTCAAACTAGTTCAAATAGTTATGACTATT
253 AAAAATAATAAGAGATTTAAAAAATAAATCTATGCATCAAACCAGTTCAAATAGTTATGACTATT
* * * * * * * * *
29672 TGAGCAATTATT-TATTTCCAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATT
318 TGAACAATT-TTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTATATT
* *** * * * *** * * *
29736 CATACAAGTTTATTTGCATTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAGTAAAA
382 CATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTAAAA
* * * *
29801 AATTTTAAAAATATGTTTCCCACACTAGATCAAATAATCATGACAATTTGAATAATTATCTATTT
447 AATTTAAAAAATATGTTTCCCACACCAGATCAAATAATCAAGACAATATGAATAATTATCTATTT
29866 CAAATCGTTATGACCTTTTGA
512 CAAATCGTTATGACCTTTTGA
* * * *
29887 TTTGTCATAAAAGAGTTGTTTTAGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATT
1 TTTGTCATAAAACAATTGTTTCAATTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATT
* *
29952 AATAATCCAAAAATTAATAATAAAGAGATTTAAAAAATGACTTTGTTTAC
66 AATAATCCAAAAAATAATAATAAAGAGATTTAAAAAATAACTTTGTTTAC
30002 TAAACAAATT
Statistics
Matches: 529, Mismatches: 101, Indels: 39
0.79 0.15 0.06
Matches are distributed among these distances:
532 5 0.01
533 129 0.24
534 27 0.05
535 57 0.11
536 102 0.19
537 206 0.39
538 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (532 bp):
TTTGTCATAAAACAATTGTTTCAATTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATT
AATAATCCAAAAAATAATAATAAAGAGATTTAAAAAATAACTTTGTTTACCTAACCAATTCAAAA
AATTATACTATTTCAACAATTATATATTTCAAATCATTATCACATTTTGTTTGGTCATACAACAA
TTTTTTTATCATACAAGATTATTCGAAATAAAATAATAATAATCTATTAATATTTCAAAAAATAA
TAAGAGATTTAAAAAATAAATCTATGCATCAAACCAGTTCAAATAGTTATGACTATTTGAACAAT
TTTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTATATTCATACAAGC
TTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTAATAACTAAAAAATTTAAAA
AATATGTTTCCCACACCAGATCAAATAATCAAGACAATATGAATAATTATCTATTTCAAATCGTT
ATGACCTTTTGA
Found at i:29836 original size:177 final size:177
Alignment explanation
Indices: 28774--30343 Score: 1015
Period size: 177 Copynumber: 8.9 Consensus size: 177
28764 ATTTAGATAG
* * * *
28774 TTATGACTATTTAAACAATTGTCTATTTAAAATCATTATGA-----TGTTTTGTCATAAAATAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * ** *
28834 TGTTTC-AGTTCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATTAATATTCCAAAAATT
66 TGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATT
* * * *** * *
28898 AATAAG-AAAGTGATTTAAAAATGAATCTATTTGTGAAATTAGTTCAAATAA
130 AATAAGTAAA-AGATTT-AAAA--AATATGTTTCCCAAACTAGATCAAATAA
* * * * * * *
28949 TTATG-GTCATTTCAACAATTATCTATTTCAAATCGTTATCACATTTTGTTTGGTCATATAACAA
1 TTATGACT-ATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAA
* * * * * * * *
29013 TT-TTTTTA-TCATACATGATTATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATT
65 TTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATT
** * * * *
29076 AATAAG----AGATTTAAAAAATGAATTTGTTTATCGAACCAGTTCAAATAG
130 AATAAGTAAAAGATTTAAAAAAT--A--TGTTTCCCAAACTAGATCAAATAA
* * * * * * *
29124 TTATGACTATTTGAACAATTTTATACTTCAAATCATTTTAACCTTTTGTTATGTCATTAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * * * * * ** *
29189 TATTTATGTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAATTA
66 TGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATTA
* ** * * * *
29254 ATAACTAAGGGATTTAAAAAATAAATTTGTTTGCCGAACCA-ATTCAAATAG
131 ATAAGTAAAAGATTTAAAAAAT--A--TGTTTCCCAAACTAGA-TCAAATAA
* * * * *
29305 TTAAGACTATATGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * * * * *
29370 T-TTCTCAATTCATACTAGCTTATTCGAATTAAAATAA-ACTGAATTTATTAATATTTCAAAAAA
66 TGTT-TCTATTCATACAAGCTTATTCGAAATAAAATAATACT-AATTTATTAATATTTTAACAAT
* * * * *
29433 TAATAAGTAATAG-TTTAAAAAATAATTTTGTTTACCTAACCA-ATTCAAAAAA
129 TAATAAGTAAAAGATTTAAAAAAT-A---TGTTTCCCAAACTAGA-TCAAATAA
* * * ** *
29485 TTAT-ACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACGACAAA
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * * * * * * * *
29549 TGTTTTTGTTGATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTCAA-AA--A
66 TGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATTA
** * * * *
29611 ATAA-TAAGTGATTTAGACAATAA-ATCTATGCCTCAAACTAGTTCAAATAG
131 ATAAGTAAAAGATTTA-A-AA-AATATGT-TTCC-CAAACTAGATCAAATAA
* * * * *
29661 TTATGACTATTTGAGCAATTATTTATTTCCAATCATTATGACTTTTTGTTTTGTTATAAAACAAT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * * * *
29726 TGTTTCTATTCATACAAGTTTATTTGCATTAAAATAATACTAATTTATTAATATTTTGACAATTA
66 TGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATTA
* * * *
29791 GTAAGTAAAAAATTTTAAAAATATGTTTCCCACACTAGATCAAATAA
131 ATAAGTAAAAGATTTAAAAAATATGTTTCCCAAACTAGATCAAATAA
* * * * * * *
29838 TCATGACAATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGATTTGTCATAAAAGAGT
1 TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
* * * ** *
29903 TGTTT-TAGTTCATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATT
66 TGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATT
* * * *
29967 AATAA-TAAAGAGATTTAAAAAATGACTTTGTTTACTAAAC-AAATTTAAATAA
130 AATAAGTAAA-AGATTTAAAAAAT-A---TGTTTCCCAAACTAGA-TCAAATAA
* * * * * * * * * *
30019 TTAGGATTGTTTGAATAATTATCTATTTGAAAT-AGCTATAACCTTTTGTTTTATAATAAAAGAA
1 TTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGACCTTTTGTTTTGTCATAAAACAA
* * * * * **
30083 TTTTTTCTGTTCAT-CTAAGCTTATTTTG-AATAAAATAACACAAATTTATTAATATTAAAACAA
65 TTGTTTCTATTCATAC-AAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTTAACAA
* * * *
30146 TTAATAAGTAAAAGATTTAAAAACAAATCTGTTTACCAAACAAGTTC---T-A
128 TTAATAAGTAAAAGATTT--AAA-AAATATGTTTCCCAAACTAGATCAAATAA
* * * * * **
30195 --AT--CAATTTGAGCTATTATTTATTTCAACAT-GTTATGATTTTTTGTTTTGTCATAAAACAA
1 TTATGACTATTTGAACAATTATCTATTTCAA-ATCATTATGACCTTTTGTTTTGTCATAAAACAA
* * * * * * *
30255 TTATTTCTGTTCATACAAGATTATTCGAATTAAAATAATATTAATTAATTAATATTTTGACAATT
65 TTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATT
30320 AATAAGTAAAAGATTTAAAAAATA
130 AATAAGTAAAAGATTTAAAAAATA
30344 AATATATTTA
Statistics
Matches: 1103, Mismatches: 236, Indels: 118
0.76 0.16 0.08
Matches are distributed among these distances:
169 4 0.00
170 3 0.00
171 6 0.01
172 103 0.09
173 7 0.01
174 9 0.01
175 107 0.10
176 36 0.03
177 286 0.26
178 65 0.06
179 103 0.09
180 82 0.07
181 278 0.25
182 7 0.01
183 3 0.00
184 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT
TGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAACAATTA
ATAAGTAAAAGATTTAAAAAATATGTTTCCCAAACTAGATCAAATAA
Found at i:30065 original size:181 final size:180
Alignment explanation
Indices: 28720--30370 Score: 1139
Period size: 181 Copynumber: 9.3 Consensus size: 180
28710 TAAAAAGAAT
* * * * * *
28720 TTAATAAG-AAG-GAGTTTAAAAAAATAAATTTGTTTA-TCGAGCAAATTTAGATAGTTATGACT
1 TTAATAAGTAAGAGA-TTT-AAAAAATAAATTTGTTTACT-AAACCAATTCAAATAATTATGACT
* * * * * *
28782 ATTTAAACAATTGTCTATTTAAAATCA-TTATGA---TGT-TTTGTCATAAAATAATTGTTTCAG
63 ATTTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTGTCATAAAACAATTGTTTTAG
* * *
28842 TTCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATTAATATTCCAAAAA
127 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * ** * *
28896 TTAATAAGAAAGTGATTT-AAAAATGAATCTATTT-GTGAAATTAGTTCAAATAATTATG-GTCA
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-AAACCAATTCAAATAATTATGACT-A
* * * * * *
28958 TTTCAACAATTATCTATTTCAAATCGTTATCACATTTTGTTTGGTCATATAACAATTTTTTTA--
64 TTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTT-GTCATAAAACAATTGTTTTAGT
* * * * *
29021 TCATACATGATTATTTGAAATAAAATAATAATAATTTATTAATCTTTCAAAAA
128 TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * *
29074 -T--TAA-TAAGAGATTTAAAAAATGAATTTGTTTA-TCGAACCAGTTCAAATAGTTATGACTAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-AAACCAATTCAAATAATTATGACTAT
* * * * * * *
29134 TTGAACAATTTTATACTTCAAATCA-TTTTAACCTTTTGTTATGTCATTAAACAATT-ATTTATG
65 TTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTGTT-TGTCATAAAACAATTGTTTTA-G
* * * *
29197 TTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAATAATATTCCAAAAA
127 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * ** * * *
29251 TTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAGACTATA
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACCAATTCAAATAATTATGACTATT
* * * *
29316 TGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATT
66 TGAACAATTATCTATTTCAAATAGTTATGACCTTTTGT-TTGTCATAAAACAATTGTT-TTAGTT
* *
29380 CATACTAGCTTATTCGAATTAAAATAA-ACTGAATTTATTAATATTTCAAAAA
129 CATACAAGCTTATTCGAAATAAAATAATACT-AATTTATTAATATTTCAAAAA
* * * *
29432 ATAATAAGTAATAG-TTTAAAAAATAATTTTGTTTACCT-AACCAATTCAAAAAATTAT-ACTAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTA-CTAAACCAATTCAAATAATTATGACTAT
* * * ** * *
29494 TTGAACAATTATATATTTCAAATCA-TTATTACTTTTTGTTTTGTCATACGACAAATGTTTTTGT
65 TTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTG-TTTGTCATAAAACAATTGTTTTAGT
* * * * * *
29558 TGATATAAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTC-AAAA
128 TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * ** * * *
29610 --AATAA-TAAGTGATTTAGACAATAAATCTATGCCT-C-AAACTAGTTCAAATAGTTATGACTA
1 TTAATAAGTAAGAGATTTAAAAAATAAAT-T-TGTTTACTAAACCAATTCAAATAATTATGACTA
* * * * *
29670 TTTGAGCAATTATTTATTTCCAATCA-TTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTA
64 TTTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTG-TTTGTCATAAAACAATTGTTT-TA
* * * * ** *
29734 -TTCATACAAGTTTATTTGCATTAAAATAATACTAATTTATTAATATTTTGACAA
126 GTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * * * * *
29788 TTAGTAAGTAAAAAATTTTAAAAAT--A--TGTTTCCCACACTAGA-TCAAATAATCATGACAAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACCA-ATTCAAATAATTATGACTAT
* * * *
29848 TTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTTAGTT
65 TTGAACAATTATCTATTTCAAATAGTTATGACCTTTTG-TTTGTCATAAAACAATTGTTTTAGTT
* * * *
29913 CATATAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAA
129 CATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * *
29965 TTAATAA-TAAAGAGATTTAAAAAATGACTTTGTTTACTAAACAAATTTAAATAATTAGGATTGT
1 TTAATAAGT-AAGAGATTTAAAAAATAAATTTGTTTACTAAACCAATTCAAATAATTATGACTAT
* * * * * * * *
30029 TTGAATAATTATCTATTTGAAATAGCTATAACCTTTTGTTTTATAATAAAAGAATT-TTTTCTGT
65 TTGAACAATTATCTATTTCAAATAGTTATGACCTTTTG-TTTGTCATAAAACAATTGTTTT-AGT
* * * *
30093 TCAT-CTAAGCTTATTTTG-AATAAAATAACACAAATTTATTAATA-TTAAAACAA
128 TCATAC-AAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTTCAAA-AA
* * * * *
30146 TTAATAAGTAAAAGATTT-AAAAACAAATCTGTTTACCAAA-CAAGTTC---T-A--AT--CAAT
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACCAA-TTCAAATAATTATGACTAT
* * * ** *
30201 TTGAGCTATTATTTATTTCAACAT-GTTATGATTTTTTGTTTTGTCATAAAACAATTATTTCT-G
65 TTGAACAATTATCTATTTCAA-ATAGTTATGACCTTTTG-TTTGTCATAAAACAATTGTTT-TAG
* * * * ** *
30264 TTCATACAAGATTATTCGAATTAAAATAATATTAATTAATTAATATTTTGACAA
127 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * *
30318 TTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAA-CAAGTTCAAATA
1 TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACCAA-TTCAAATA
30371 GTCATTAATA
Statistics
Matches: 1158, Mismatches: 247, Indels: 139
0.75 0.16 0.09
Matches are distributed among these distances:
171 3 0.00
172 95 0.08
173 35 0.03
174 15 0.01
175 141 0.12
176 48 0.04
177 282 0.24
178 61 0.05
179 93 0.08
180 95 0.08
181 284 0.25
182 6 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
TTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACCAATTCAAATAATTATGACTATT
TGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTGTCATAAAACAATTGTTTTAGTTCA
TACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAA
Found at i:30931 original size:181 final size:182
Alignment explanation
Indices: 30414--30946 Score: 648
Period size: 180 Copynumber: 2.9 Consensus size: 182
30404 CAATTCACAT
* * * * * *
30414 AAGCTTATTTGAAGTAAGATAATACTAATTTATTAATATTCCAAAAATTAATGAGTGAGAGAATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTT
* * * * *
30479 AAAAAAAAGAATATGATTACCGAATAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTT
66 AAAAAATA-AATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * ** **
30544 CAAAACATTATGACCTTTTGTTTTGTTATAAAACAATTG-GCTTGGTTCATGG
130 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGGTTCATAA
* *
30596 AAGCTTATTTTG-AATAAAATAAT-TTAAATTTATTAATATTCCAAAAATTAATAAGTAAAA-TT
1 AAGCTTA-TTTGAAATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAAAGAT
* ** * * * *
30658 TTAAAAAATAAATATGTTTTCTAAACACGTTCAAATAGTTACGACTATTTGAAGAGTTATCTATT
64 TTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATT
* * * *
30723 TCAAATCGTTATGAGCTTTTATTTTGTCATAAACCAATTGTTTTTGG-TCATAA
129 TCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGGTTCATAA
* *
30776 AAGCTT-TTTCGAAATAAAATAGTACTAATTTATTAAAATTCCAAAAATTAATAAGTAAAAGATT
1 AAGCTTATTT-GAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATT
* * * *
30840 TCAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTTATGAGTATTTGAATAATTATTTATTT
65 TAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
*
30905 CAAATCATTATGATCTTTTGTTTTGTCATAAAACAATT-TTTT
130 CAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTT
30947 CTATTCGAGA
Statistics
Matches: 295, Mismatches: 49, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
178 3 0.01
179 1 0.00
180 135 0.46
181 105 0.36
182 47 0.16
183 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (182 bp):
AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTT
AAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
AAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGGTTCATAA
Found at i:31237 original size:19 final size:19
Alignment explanation
Indices: 31213--31251 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
31203 TAAGAATCAT
*
31213 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
31232 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
31251 T
1 T
31252 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:31293 original size:23 final size:22
Alignment explanation
Indices: 31267--31310 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
31257 TTGAATAAAT
31267 TATTAATATTACTAATAATATTA
1 TATTAATATTACTAAT-ATATTA
*
31290 TATTAATATTATTAATATATT
1 TATTAATATTACTAATATATT
31311 TAATAATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAATATTACTAATATATTA
Found at i:31564 original size:21 final size:21
Alignment explanation
Indices: 31530--31605 Score: 68
Period size: 21 Copynumber: 3.5 Consensus size: 21
31520 ACATTTAAAT
31530 ATTAGTTATT-TAAATG-TATAA
1 ATTA-TTATTATAAATGAT-TAA
31551 ATTATTATTATAAA-GATTAA
1 ATTATTATTATAAATGATTAA
*
31571 AATATTAATTATAAATAGATTAAA
1 ATTATT-ATTATAAAT-GATT-AA
*
31595 ATTAGTATTAT
1 ATTATTATTAT
31606 GATAACAATA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
20 14 0.30
21 17 0.37
23 9 0.20
24 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTATTATAAATGATTAA
Found at i:31577 original size:23 final size:25
Alignment explanation
Indices: 31551--31610 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
31541 AAATGTATAA
31551 ATTATTATTATAA-AGATTAAAA-T
1 ATTATTATTATAATAGATTAAAATT
31574 ATTA--ATTATAAATAGATTAAAATT
1 ATTATTATTAT-AATAGATTAAAATT
* *
31598 AGTATTATGATAA
1 ATTATTATTATAA
31611 CAATAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
21 5 0.17
22 2 0.07
23 13 0.43
24 4 0.13
25 2 0.07
26 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
ATTATTATTATAATAGATTAAAATT
Found at i:31782 original size:22 final size:22
Alignment explanation
Indices: 31719--31796 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
31709 ATTTATTAAA
31719 TAATATAATTATTTAGTTTTATATT
1 TAAT-TAATTATTTA--TTTATATT
* * *
31744 TAATTAATTAATGATTTCTATT
1 TAATTAATTATTTATTTATATT
*
31766 TACTTAATTATTTATTT-TAATT
1 TAATTAATTATTTATTTAT-ATT
*
31788 TAAATAATT
1 TAATTAATT
31797 TGCAATAGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.02
22 31 0.70
24 8 0.18
25 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (22 bp):
TAATTAATTATTTATTTATATT
Found at i:32052 original size:20 final size:20
Alignment explanation
Indices: 31999--32052 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
31989 TAAATTCTTT
31999 TATATATATTAAATAATATTAA
1 TATAT-TATT-AATAATATTAA
32021 TAATATTA-TAATAATATTGAA
1 T-ATATTATTAATAATATT-AA
32042 T-TATTATTAAT
1 TATATTATTAAT
32053 TCAATATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 5 0.17
20 13 0.45
21 4 0.14
22 3 0.10
23 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TATATTATTAATAATATTAA
Found at i:32901 original size:19 final size:20
Alignment explanation
Indices: 32860--32901 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
32850 AAACAAATTT
* * *
32860 ATTTTTTAAATATCTTATTA
1 ATTTTTAAAATATCTAATAA
32880 ATTTTTAAAATAT-TAATAA
1 ATTTTTAAAATATCTAATAA
32899 ATT
1 ATT
32902 AATATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTTAAAATATCTAATAA
Found at i:33459 original size:36 final size:36
Alignment explanation
Indices: 33407--33480 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
33397 AATCTCCAAC
*
33407 TTCTTAATTTTTGAAATATTAATAAAGTGA-TATTAT
1 TTCTCAATTTTTGAAATATTAATAAAGT-ATTATTAT
*
33443 TTCTCAATTTTTGAAATATTGATAAAGTATTATTAT
1 TTCTCAATTTTTGAAATATTAATAAAGTATTATTAT
33479 TT
1 TT
33481 TATTTTGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 34 0.97
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.51
Consensus pattern (36 bp):
TTCTCAATTTTTGAAATATTAATAAAGTATTATTAT
Found at i:34040 original size:743 final size:742
Alignment explanation
Indices: 32810--34175 Score: 1609
Period size: 743 Copynumber: 1.8 Consensus size: 742
32800 TATGAAATAA
* * *
32810 ATAATTGTTAAATTGTTATAACTAATTGAACTAGTTTGGTAAACAAATTTATTTTTTAAATATCT
1 ATAATTGTTAAATAGTCATAACTAATTAAACTAGTTTGGTAAACAAATTTATTTTTTAAATATCT
* * *
32875 TATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTTAAACAAAATTATATTAACAAAA
66 TATTAATTTTTAAAATATTAATAAAATAATATTATTTTATTTCAAACAAAATTATATGAACAAAA
* * * *
32940 ACATTTGTTTTATGACAAAATAAAAGAATATAACAATTTGAAATAGATAATTATTCATATAGCCT
131 ACAATTATTTTATGACAAAACAAAAGAATAGAACAATTTGAAATAGATAATTATTCATATAGCCT
* * *
33005 TAATTATTTGAACTGGTTCAACAAATAAATTTATTTTTCAAATCTCATAATTATTAATTTTCATA
196 TAACTATTTGAACTGGTTCAAAAAATAAATTTATTTTTCAAATCTC---ATTATTAATTTTCAGA
* * * *
33070 ATATTATTACGTTAGTATTATTTTCTTTCAAATAAGCTTGTATGAACATAAATAATAGTTTTATG
258 ATATTATTACG-TAGTATTATTTACTTCCAAATAAGCTTGTATGAACAAAAACAATAGTTTTATG
* * * * * * *
33135 ACAAAACAAAAGGTTATAATGACTTGAAATATATAATTGTTTACATAGTCAAAATTATTTGAACT
322 ACAAAACAAAAGATCATAATGACTTGAAATAGATAATTATTCAAATAGTCAAAACTATTTGAACT
**
33200 AGTTCAGTAAACAGATAATCTCCTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTT
387 AGTTCAGTAAACAGATAATCTCCTACTTATTAATTTTCAAAATATTAATAAACTAGTATTATTTT
* *
33265 ATTCTAATTAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCAAAATGATT
452 ATTCTAATTAAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGATCAAAATGATT
* * * * * * *
33330 TGAAATAGATAATTATTCAAATGGCCGTAACTATTTGAATTGATTCGATAAA-ATGATTTATGTT
517 TGAAATAAATAATTATTCAAATAGCCATAACTATTTGAACTCACTCGATAAATA-AATTTATGTT
* *
33394 TTAAATCTCCAACTTCTTAATTTTTG-AAATATTAATAAAGTGATATTATTTCTCAATTTTTGAA
581 TTAAATATCCAACTTATTAATTTTTGAAAAT-TTAATAAAGTGATATTATTTCTCAATTTTTGAA
33458 ATATTGATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAAATGAAACCATTGTTTTATG
645 ATATTGATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAAATGAAACCATTGTTTTATG
33523 ATAAAAAAAAAAGGTCATAATGATTTTAAAATG
710 ATAAAAAAAAAAGGTCATAATGATTTTAAAATG
* * * *
33556 ATAATTGTTTAAATAGTCATAACTATTTAAACTTGTTTGGTAAACAAATTTATTTTTTAATTCCT
1 ATAATTG-TTAAATAGTCATAACTAATTAAACTAGTTTGGTAAACAAATTTATTTTTTAAAT--A
* * * * *
33621 TGCTTATTAATTTTCT-AAATGTTAATAAAATAGTATTATTTTATTTCAAATAAGCA-TGTATGA
63 T-CTTATTAATTTT-TAAAATATTAATAAAATAATATTATTTTATTTCAAACAA-AATTATATGA
** * * * **
33684 AC-TGAACAATTATTTTATGACTAAACAATAG-GTCAGAATGATTTGAAATAGATAATTATT-AT
125 ACAAAAACAATTATTTTATGACAAAACAAAAGAAT-AGAACAATTTGAAATAGATAATTATTCAT
* * *
33746 AATAGTCTTAACTATTTGAACTGGTTCAAAAAATACATTTATTTTTTAAATCTC-TTATTAATTT
189 -ATAGCCTTAACTATTTGAACTGGTTCAAAAAATAAATTTATTTTTCAAATCTCATTATTAATTT
* * * * *
33810 TTAGAATATTATTA-G-A-TA-T-TTTAC-TCCGAATAAGTTTGTATGGACAAAAACAATTGTTT
253 TCAGAATATTATTACGTAGTATTATTTACTTCCAAATAAGCTTGTATGAACAAAAACAATAGTTT
* * * * *
33869 TATGACAAAAC-AAAGATCATATTGATTTGAGATGGATAATTATTCAAATAGTCATAACTATTTG
318 TATGACAAAACAAAAGATCATAATGACTTGAAATAGATAATTATTCAAATAGTCAAAACTATTTG
* * * ** *
33933 AATTGGTTC-GATAAATAGATATAGT-TTTTAAATCTCTTATTAATTTTCAAAATATTAATAAAT
383 AACTAGTTCAG-TAAACAGATA-A-TCTCCT--A---CTTATTAATTTTCAAAATATTAATAAAC
* ** * *
33996 TAGTATTATTTTATTTTGAA-TAATTTTGTATGAAT-AGAAACAATTGTTTTATTACAAAACAAA
440 TAGTATTATTTTATTCT-AATTAAGCTTGTATG-ATGAAAAACAATTGTTTTATGACAAAACAAA
* * * * *
34059 GGATCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTGAACTCACTCGATAA
503 AGATCAAAATGATTTGAAATAAATAATTATTCAAATAGCCATAACTATTTGAACTCACTCGATAA
* ***
34124 ATAAATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAAATTTAATAAA
568 ATAAATTTATGTTTTAAATATCCAACTTATTAATTTTTGAAAATTTAATAAA
34176 TTAGTATTAT
Statistics
Matches: 514, Mismatches: 86, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
736 1 0.00
737 57 0.11
738 42 0.08
739 5 0.01
740 2 0.00
741 2 0.00
742 1 0.00
743 167 0.32
744 10 0.02
745 22 0.04
746 7 0.01
747 48 0.09
748 3 0.01
749 94 0.18
750 51 0.10
751 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (742 bp):
ATAATTGTTAAATAGTCATAACTAATTAAACTAGTTTGGTAAACAAATTTATTTTTTAAATATCT
TATTAATTTTTAAAATATTAATAAAATAATATTATTTTATTTCAAACAAAATTATATGAACAAAA
ACAATTATTTTATGACAAAACAAAAGAATAGAACAATTTGAAATAGATAATTATTCATATAGCCT
TAACTATTTGAACTGGTTCAAAAAATAAATTTATTTTTCAAATCTCATTATTAATTTTCAGAATA
TTATTACGTAGTATTATTTACTTCCAAATAAGCTTGTATGAACAAAAACAATAGTTTTATGACAA
AACAAAAGATCATAATGACTTGAAATAGATAATTATTCAAATAGTCAAAACTATTTGAACTAGTT
CAGTAAACAGATAATCTCCTACTTATTAATTTTCAAAATATTAATAAACTAGTATTATTTTATTC
TAATTAAGCTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGATCAAAATGATTTGAA
ATAAATAATTATTCAAATAGCCATAACTATTTGAACTCACTCGATAAATAAATTTATGTTTTAAA
TATCCAACTTATTAATTTTTGAAAATTTAATAAAGTGATATTATTTCTCAATTTTTGAAATATTG
ATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAAATGAAACCATTGTTTTATGATAAAA
AAAAAAGGTCATAATGATTTTAAAATG
Found at i:34238 original size:181 final size:180
Alignment explanation
Indices: 33448--34830 Score: 1252
Period size: 181 Copynumber: 7.7 Consensus size: 180
33438 ATTATTTCTC
* * * * * *
33448 AATTTTTGAAATATTGATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAACC
1 AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATA-GAAACA
* * * * *
33512 ATTGTTTTATGATAAAAAAAAAAGGTCATAATGATTTTAAA-ATGATAATTGTTTAAATAGTCAT
65 ATTGTTTTATG--ACAAAACAAAGGTCATAATGATTTGAAATA-GATAATTATTCAAATAGTCAT
* * * * * *
33576 AACTATTTAAACTTGTTTGGTAAACAAATTTATTTTTT-AAT-TCCTTGCTTATT
127 AACTATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATAT-TTTACTTATT
* * * * *
33629 AATTTTCT-AAATGTTAATAAAATAGTATTATTTTATTTCAAATAAGCATGTATGAACT-G-AAC
1 AATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAA-TAGAAAC
* * * *
33691 AATTATTTTATGACTAAACAATAGGTCAGAATGATTTGAAATAGATAATTATT-ATAATAGTCTT
64 AATTGTTTTATGACAAAACAA-AGGTCATAATGATTTGAAATAGATAATTATTCA-AATAGTCAT
* * * * *
33755 AACTATTTGAACTGGTTCAAAAAATACATTTATTTTTT-AA-A-TCT-CTTATT
127 AACTATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * * *
33805 AATTTTT-AGAATA-T--T--ATTAG-A-TATTTTACTCCGAATAAG-TTTGTATGGACAAAAAC
1 AATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTT-TATGAATAGAAAC
* * * *
33861 AATTGTTTTATGACAAAACAAAGATCATATTGATTTGAGATGGATAATTATTCAAATAGTCATAA
64 AATTGTTTTATGACAAAACAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAA
* * * *
33926 CTATTTGAA-TTGGTTCGATAAATAGATATAGTTTTT-AA-A-TCT-CTTATT
129 CTATTTGAACTT-GTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
** * *
33974 AATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAA-TTTTGTATGAATAGAAACA
1 AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTT-TATGAATAGAAACA
* * *
34038 ATTGTTTTATTACAAAACAAAGGATCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAA
65 ATTGTTTTATGACAAAACAAAGG-TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAA
* ***
34103 TTATTTGAACTCACTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
129 CTATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
34155 AATTTTTGAAA-ATTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACA
1 AATTTTTGAAATA-TTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACA
* * * * * * *
34219 ATTGGTTTATGGCAAAAC-AAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATGGTCATAAT
65 ATTGTTTTATGACAAAACAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAAC
* * * * *
34283 TATTTTGAACGTGTTCAAAAAATAAATTTATTTTATATAT-TTTTACTTATT
130 TA-TTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * * *
34334 AATCTTTGGAATATTAGTAAATTTA-TATTATTTTATTT-GAAATAAGCCTGTATGAATAGAAAC
1 AATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCG-AATAAGCTTTTATGAATAGAAAC
** *
34397 AATTGTTTTATGGA-AAAACAAAAGGTCATAACAATTTGAAATAGATAATTATCCAAATAGTCAT
64 AATTGTTTTAT-GACAAAAC-AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCAT
* * * * * * *
34461 AACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATT
127 AACTATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * * * ***
34515 AATTTTT-AGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATGTA
1 AATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACA
* * * * * * * *
34579 ATTGTTTTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATTATTTAGACAGTTATTA
65 ATTGTTTTATGACAAAAC-AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAA
* * * *
34644 CTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATT
129 CTATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * ** * * *
34696 AATTGTTGAAATATTAATAAATTAATATTATTTTAATAT-GAATAAGCTAATATGAACAAAAATA
1 AATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTCGAATAAGCTTTTATGAATAGAAACA
* * * * * *
34760 ATTGTTTTTATGACAAGACAAAAGGTTATAATGATTCGAAATAAATAATTGTTCCAATAGTCATA
65 ATTG-TTTTATGACAAAAC-AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATA
34825 ACTATT
128 ACTATT
34831 CAAAATTATT
Statistics
Matches: 987, Mismatches: 170, Indels: 89
0.79 0.14 0.07
Matches are distributed among these distances:
168 2 0.00
169 106 0.11
170 26 0.03
171 4 0.00
172 1 0.00
173 1 0.00
174 5 0.01
175 4 0.00
176 65 0.07
177 64 0.06
178 11 0.01
179 181 0.18
180 87 0.09
181 369 0.37
182 61 0.06
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (180 bp):
AATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAA
TTGTTTTATGACAAAACAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACT
ATTTGAACTTGTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
Found at i:34400 original size:360 final size:358
Alignment explanation
Indices: 33448--34830 Score: 1308
Period size: 360 Copynumber: 3.9 Consensus size: 358
33438 ATTATTTCTC
* * * * * * *
33448 AATTTTTGAAATATTGATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAACC
1 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATA-GAAACA
* * * * * * *
33512 ATTGTTTTATGATAAAAAAAAAAGGTCATAATGATTTTAAAATGATAATTGTTTAAATAGTCATA
65 ATTGTTTTATG--ACAAAACAAAGGTCATAACGATTTGAAAAAGATAATTATTCAAATAGTCATA
* * * * * * *
33577 ACTATTTAAACTTGTTTGGTAAACAAATTTATTTTTTAATTCCTTGCTTATTAATTTTCTAAATG
128 ACTATTTGAACTTGTTCGATAAACAAATTTATTTTTTAATT-TTTACTTATTAATTTTCGAAATA
* * * *
33642 TTAATAAAATAGTATTATTTTATTTCAAATAAGCATGTATGAACT-G-AACAATTATTTTATGAC
192 TTAATAAATTAGTATTATTTTATTT-GAATAAGCCTGTATGAA-TAGAAACAATTGTTTTATGAC
* * * * * *
33705 TAAACAATAGGTCAGAATGATTTGAAATAGATAATTATT-ATAATAGTCTTAACTATTTGAACTG
255 AAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA-AATAGTCATAACTATTTGAACTC
* * * *
33769 GTTCAAAAAATACATTTATTTTTT-AA-A-TCT-CTTATT
319 GTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * * * *
33805 AATTTTTAGAATA-T--T--ATTAG-A-TATTTTACTCCGAATAAG-TTTGTATGGACAAAAACA
1 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTT-TATGAATAGAAACA
* ** * **
33862 ATTGTTTTATGACAAAACAAAGATCATATTGATTTGAGATGGATAATTATTCAAATAGTCATAAC
65 ATTGTTTTATGACAAAACAAAGGTCATAACGATTTGAAAAAGATAATTATTCAAATAGTCATAAC
* * * * * * *
33927 TATTTGAA-TTGGTTCGATAAATAGATATAGTTTTTAA-ATCT-CTTATTAATTTTCAAAATATT
130 TATTTGAACTT-GTTCGATAAACAAATTTATTTTTTAATTTTTACTTATTAATTTTCGAAATATT
*** *
33989 AATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAACAATTGTTTTATTACAAA
194 AATAAATTAGTATTATTTTA-TTTGAATAAGCCTGTATGAATAGAAACAATTGTTTTATGACAAA
* * **
34054 AC-AAAGGATCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTGAACTCACT
258 ACAAAAGG-TCATAATGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTCGTT
34118 CGATAAATAAATTTATTTTTTAAATATTTTACTTATT
322 CGATAAATAAATTTATTTTTTAAATATTTTACTTATT
34155 AATTTTTGAAAAT-TTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACA
1 AATTTTT-AAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACA
* * * * *
34219 ATTGGTTTATGGCAAAAC-AAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATGGTCATAAT
65 ATTGTTTTATGACAAAACAAAGGTCATAACGATTTGAAAAAGATAATTATTCAAATAGTCATAAC
* * * * * *
34283 TATTTTGAACGTGTTCAAAAAATAAATTTATTTTATATATTTTTACTTATTAATCTTT-GGAATA
130 TA-TTTGAACTTGTTCGATAAACAAATTTATTTTTTA-ATTTTTACTTATTAAT-TTTCGAAATA
*
34347 TTAGTAAATTTA-TATTATTTTATTTGAAATAAGCCTGTATGAATAGAAACAATTGTTTTATGGA
192 TTAATAAA-TTAGTATTATTTTATTTG-AATAAGCCTGTATGAATAGAAACAATTGTTTTAT-GA
** * * *
34411 -AAAACAAAAGGTCATAACAATTTGAAATAGATAATTATCCAAATAGTCATAACTATTTGAACTT
254 CAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTC
* * * * * * *
34475 GTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATT
319 GTTCGATAAATAAATTTATTTTTTAAATATTTTACTTATT
* * * * * * ***
34515 AATTTTTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATGTAA
1 AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAA
* * * * * * * *
34580 TTGTTTTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATTATTTAGACAGTTATTAC
66 TTGTTTTATGACAAAAC-AAAGGTCATAACGATTTGAAAAAGATAATTATTCAAATAGTCATAAC
* *
34645 TATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTT-GAAATA
130 TATTTGAACTTGTTCGATAAACAAATTTATTTTTT-AAT-TTTTACTTATTAATT-TTCGAAATA
* * * * * *
34709 TTAATAAATTAATATTATTTTAATATGAATAAG-CTAATATGAACAAAAATAATTGTTTTTATGA
192 TTAATAAATTAGTATTATTTT-ATTTGAATAAGCCT-GTATGAATAGAAACAATTG-TTTTATGA
* * * * *
34773 CAAGACAAAAGGTTATAATGATTCGAAATAAATAATTGTTCCAATAGTCATAACTATT
254 CAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCAAATAGTCATAACTATT
34831 CAAAATTATT
Statistics
Matches: 839, Mismatches: 145, Indels: 78
0.79 0.14 0.07
Matches are distributed among these distances:
344 1 0.00
345 56 0.07
346 88 0.10
347 5 0.01
348 72 0.09
349 5 0.01
350 47 0.06
351 7 0.01
352 3 0.00
353 1 0.00
354 1 0.00
355 5 0.01
356 41 0.05
357 79 0.09
358 5 0.01
359 10 0.01
360 210 0.25
361 46 0.05
362 99 0.12
363 58 0.07
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (358 bp):
AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAA
TTGTTTTATGACAAAACAAAGGTCATAACGATTTGAAAAAGATAATTATTCAAATAGTCATAACT
ATTTGAACTTGTTCGATAAACAAATTTATTTTTTAATTTTTACTTATTAATTTTCGAAATATTAA
TAAATTAGTATTATTTTATTTGAATAAGCCTGTATGAATAGAAACAATTGTTTTATGACAAAACA
AAAGGTCATAATGATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTCGTTCGAT
AAATAAATTTATTTTTTAAATATTTTACTTATT
Found at i:34629 original size:541 final size:525
Alignment explanation
Indices: 33464--34830 Score: 1409
Period size: 541 Copynumber: 2.6 Consensus size: 525
33454 TGAAATATTG
* * * * * * * *
33464 ATAAAGTATTATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAACCATTGTTTTATGATAAA
1 ATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATA-GAAACAATTGTTTTATGA-CAA
* * * *
33528 AAAAAAAGGTCATAATGATTTTAAA-ATGATAATTGTTTAAATAGTCATAACTATTTAAACTTGT
64 AACAAAAGGTCATAATGATTTGAAATA-GATAATTATTTAAATAGTCATAACTATTTGAACTTGT
* * * * *
33592 TTGGTAAACAAATTTATTTTTT-AATTCCTTGCTTATTAATTTTCT-AAATGTTAATAAAATAGT
128 TCGGTAAACAAATTTATTTTTTAAATT-TTTACTTATTAATTTT-TGAAATATTAATAAATTAGT
* * * * *
33655 ATTATTTTATTTCAAATAAGCATGTATGAACT-G-AACAATTATTTTATGACTAAACAATAGGTC
191 ATTATTTTATTTCGAATAAGCTTATATGAA-TAGAAACAATTGTTTTATGACAAAAC-A-AGGTC
* * * *
33718 AGAATGATTTGAAATAGATAATTATT-ATAATAGTCTTAACTA-TTTGAACTGGTTCAAAAAATA
253 ATAATGATTTGAAAAAGATAATTGTTCA-AATAGTCATAACTATTTTGAACTGGTTCAAAAAATA
* * **
33781 CATTTATTTTTTAAATCTCTTATTAATTTTTAGAATATTATTAGATATTTTACTCCGAATAAGTT
317 AATTTATTTTTTAAATCTCTTATTAATCTTTAGAATATTATTAGATATTTTACTCCGAATAAGCC
* *** * *
33846 TGTATGGACAAAAACAATTGTTTTATGACAAAACAAAGATCATATTGATTTGAGATGGATAATTA
382 TGTATGAACAAAAACAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAAATAGATAATTA
*
33911 TTCAAATAGTCATAACTATTTGAATTGGTTCGATAAATAGATATAGTTTTTAAATCTCTTATTAA
447 TCCAAATAGTCATAACTATTTGAATTGGTTCGATAAATAGATATAGTTTTTAAATCTCTTATTAA
*
33976 TTTTCAAAATATTA
512 TTTTCAAAATAGTA
* *** * *
33990 ATAAATTAGTATTATTTTATTTTGAATAATTTTGTATGAATAGAAACAATTGTTTTATTACAAAA
1 ATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGTTTTATGACAAAA
* * ***
34055 C-AAAGGATCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTGAACTCACTC
66 CAAAAGG-TCATAATGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTC
* *
34119 GATAAATAAATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAA-ATTTAATAAATTAGTAT
130 GGTAAACAAATTTATTTTTTAAAT-TTTTACTTATTAATTTTTGAAATA-TTAATAAATTAGTAT
* * * *
34183 TATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGGCAAAACAAGGTCATAAC
193 TATTTTATTTCGAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAGGTCATAAT
* *
34248 GATTTGAAAAAGATAATTGTTCAAATGGTCATAATTATTTTGAAC-GTGTTCAAAAAATAAATTT
258 GATTTGAAAAAGATAATTGTTCAAATAGTCATAACTATTTTGAACTG-GTTCAAAAAATAAATTT
** * * * **
34312 ATTTTATATATTTTTACTTATTAATCTTTGGAATATTAGTAAATTTATATTATTTTA-TTTGAAA
322 ATTTT-T-TAAATCT-CTTATTAATCTTTAGAATA-T--T--A-TTAGA-TATTTTACTCCG-AA
* * *
34376 TAAGCCTGTATGAATAGAAACAATTGTTTTATGGA-AAAACAAAAGGTCATAACAATTTGAAATA
376 TAAGCCTGTATGAACAAAAACAATTGTTTTAT-GACAAAAC-AAAGATCATAACAATTTGAAATA
* * *
34440 GATAATTATCCAAATAGTCATAACTATTTGAACTT-GTTTGGTAAATAGAT-TCATTTTTTAAAT
439 GATAATTATCCAAATAGTCATAACTATTTGAA-TTGGTTCGATAAATAGATAT-AGTTTTTAAAT
* *
34503 CTCTTACTCATTAATTTTTAGAATAGTA
502 CTC-T--T-ATTAATTTTCAAAATAGTA
* * *** *
34531 ATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATGTAATTGTTTTATGGCAAAA
1 ATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGTTTTATGACAAAA
* * * * * *
34596 CAAAATGTCATAACGATTTGAAATAGATAATTATTTAGACAGTTATTACTATTTGAACTTGTTCG
66 CAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCG
* * *
34661 GTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTA
131 GTAAACAAATTTATTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTA
* * * * * * *
34726 TTTTAATAT-GAATAAGCTAATATGAACAAAAATAATTGTTTTTATGACAAGACAAAAGGTTATA
195 TTTT-ATTTCGAATAAGCTTATATGAATAGAAACAATTG-TTTTATGACAA-A-ACAAGGTCATA
* *
34790 ATGATTCGAAATAA-ATAATTGTTCCAATAGTCATAACTATT
256 ATGATTTGAAA-AAGATAATTGTTCAAATAGTCATAACTATT
34831 CAAAATTATT
Statistics
Matches: 693, Mismatches: 110, Indels: 58
0.80 0.13 0.07
Matches are distributed among these distances:
524 5 0.01
525 109 0.16
526 141 0.20
527 21 0.03
528 4 0.01
529 17 0.02
530 1 0.00
532 1 0.00
534 1 0.00
535 6 0.01
536 42 0.06
537 76 0.11
538 3 0.00
540 1 0.00
541 203 0.29
542 17 0.02
543 1 0.00
544 42 0.06
545 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (525 bp):
ATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGTTTTATGACAAAA
CAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCG
GTAAACAAATTTATTTTTTAAATTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
TTTATTTCGAATAAGCTTATATGAATAGAAACAATTGTTTTATGACAAAACAAGGTCATAATGAT
TTGAAAAAGATAATTGTTCAAATAGTCATAACTATTTTGAACTGGTTCAAAAAATAAATTTATTT
TTTAAATCTCTTATTAATCTTTAGAATATTATTAGATATTTTACTCCGAATAAGCCTGTATGAAC
AAAAACAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAAATAGATAATTATCCAAATAG
TCATAACTATTTGAATTGGTTCGATAAATAGATATAGTTTTTAAATCTCTTATTAATTTTCAAAA
TAGTA
Found at i:35306 original size:478 final size:482
Alignment explanation
Indices: 34368--35306 Score: 1146
Period size: 478 Copynumber: 2.0 Consensus size: 482
34358 ATATTATTTT
* * *
34368 ATTTGAAATAAGCCTGTATGAATAGAAACAATTGTTTTATGGAAAAACAAAAGGTCATAACAATT
1 ATTTGAAATAAGCCTGTATGAATAGAAAAAATTATTTTATGGAAAAACAAAAAGTCATAACAATT
* *
34433 TGAAATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTT
66 TGAAATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTTT
* * *
34498 TAAATCTCTTACTCATTAATTTTTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCC
131 TAAA-CTCTTACTCATTAATTTTTAGAATAGTAATAAATTAGAATTATGTTATTTCGAATAAGCC
** ***
34563 TATATGAATTGATGTAATTGTTTTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATT
195 TATATGAATCAAAACAATTGTTTTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATT
* * * * * ** * ** **
34628 ATTTAGACAGTTATTACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAATCTTTTACTT
260 ATTCAAACAGTCATAACTATTTGAACTTGGTCGCCAAACAGATACATTTTTTAAATCCATTACTT
* * * *
34693 ATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATATGAATAAGCTAATATGAACAAAAA
325 ATTAATTGTTAAAATATTAATAAATTAACATTATTTTAATATAAATAAGATAATATGAACAAAAA
* * * * *
34758 TAATTGTTTTTATGACAAGACAAAAGGTTATAATGATTCGAAATAAATAATTGTTCCAATAGTCA
390 CAATTGTTTTTATGACAAAACAAAAGGTCATAATGATTCGAAATAAATAATTGGTCAAATAGTCA
34823 TAACTATTCAAAATTATTCGGTAAACAG
455 TAACTATTCAAAATTATTCGGTAAACAG
* * * *
34851 ATTTGAAATAAGCTTGTATGAATAGAAAAAATTATTTTAT-GACAATACAAAAAGTTATAGCAAT
1 ATTTGAAATAAGCCTGTATGAATAGAAAAAATTATTTTATGGA-AAAACAAAAAGTCATAACAAT
* * * *
34915 TTGAACTAGATAATTGTTCAAATAGTCATAATTATTTGAACTTGTTTAGTAAACAGATTCATTTT
65 TTGAAATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTT
* *
34980 TTAAA-TC-T-CTCATTAATTTTT-GAAATATTAATAAATTAGAATTATGTTATTTTGAATAAGC
130 TTAAACTCTTACTCATTAATTTTTAG-AATAGTAATAAATTAGAATTATGTTATTTCGAATAAGC
* * * *
35041 TTGTATGAA-CAAAACAATTGTTTTGTGAG-AAAACAAAA-GTTCATAATGATTTGAAATAGATA
194 CTATATGAATCAAAACAATTGTTTTATG-GCAAAACAAAATG-TCATAACGATTTGAAATAGATA
* * * *
35103 ATTATTCAAATAGTCATAATTGTTTGCAC-TGGTCAAGCCAAA-AGATACATTTTTTAAATCCAT
257 ATTATTCAAACAGTCATAACTATTTGAACTTGGTC--GCCAAACAGATACATTTTTTAAATCCAT
* * * *
35166 TACTTATTAATT-TTCAAAATATTAATAAAATTAGCATTATTTTATTCTAAATAAGATTATATGA
320 TACTTATTAATTGTT-AAAATATTAAT-AAATTAACATTATTTTAATATAAATAAGATAATATGA
* * * * * *
35230 ACATAAACAATTG-TTTTATGATAAAACAAATGGTCATAATGATTTGAAGTAAATATTTGGTCAA
383 ACAAAAACAATTGTTTTTATGACAAAACAAAAGGTCATAATGATTCGAAATAAATAATTGGTCAA
*
35294 ATAGTTATAACTA
448 ATAGTCATAACTA
35307 ATTAAACTGT
Statistics
Matches: 385, Mismatches: 63, Indels: 21
0.82 0.13 0.04
Matches are distributed among these distances:
477 7 0.02
478 156 0.41
479 99 0.26
480 1 0.00
481 2 0.01
482 2 0.01
483 118 0.31
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (482 bp):
ATTTGAAATAAGCCTGTATGAATAGAAAAAATTATTTTATGGAAAAACAAAAAGTCATAACAATT
TGAAATAGATAATTATCCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTTT
TAAACTCTTACTCATTAATTTTTAGAATAGTAATAAATTAGAATTATGTTATTTCGAATAAGCCT
ATATGAATCAAAACAATTGTTTTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATTA
TTCAAACAGTCATAACTATTTGAACTTGGTCGCCAAACAGATACATTTTTTAAATCCATTACTTA
TTAATTGTTAAAATATTAATAAATTAACATTATTTTAATATAAATAAGATAATATGAACAAAAAC
AATTGTTTTTATGACAAAACAAAAGGTCATAATGATTCGAAATAAATAATTGGTCAAATAGTCAT
AACTATTCAAAATTATTCGGTAAACAG
Found at i:35334 original size:659 final size:661
Alignment explanation
Indices: 34195--35448 Score: 1478
Period size: 659 Copynumber: 1.9 Consensus size: 661
34185 TTTTATTTCG
* * * * * * *
34195 AATAAGCTTTTATGAATAGAAACAATTGGTTTATGGCAAAACAAGGTCATAACGATTTGAAAAAG
1 AATAAGCTTGTATGAATAGAAAAAATTAGTTTATGACAAAAAAAAGTCATAACAATTTGAAAAAG
* * * **
34260 ATAATTGTTCAAATGGTCATAATTATTTTGAACGTGTTCAAAAAATAAATTTATTTTATATATTT
66 ATAATTGTTCAAATAGTCATAATTATTTTGAACGTGTTCAAAAAACAAATTCATTTTATATAAAT
* * * * * *
34325 TTACTTATTAATCTTTGGAATATTAGTAAATTTATATTATTTTATTTGAAATAAGCCTGTATGAA
131 CTACTCATTAATCTTTGAAATATTAATAAATTTAAATTATGTTATTTGAAATAAGCCTGTATGAA
*
34390 TAGAAACAATTGTTTTATGGAAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATCCAAAT
196 CAGAAACAATTGTTTTATGGAAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATCCAAAT
* ** ** *
34455 AGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAATTT
261 AGTCATAACTATTTGAACTGGTAAGCCAAATAGATACATTTTTTAAATCTCTTACTCATTAATTT
* * * * * * * ***
34520 TTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATGTAATTGTT
326 TCAAAATAGTAATAAATTAGCATTATTTTATTTCAAATAAGACTATATGAAATGAAACAATTGTT
* * * * * * *
34585 TTATGGCAAAACAAAATGTCATAACGATTTGAAATAGATAATTATTTAGACAGTTATTACTATTT
391 TTATGACAAAACAAAATGTCATAACGATTTGAAATAAATAATTAGTCAAACAGTTATAACTAATT
* * * * *
34650 GAACTTGTTCGGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATA
456 AAACTTGTTCGGCAAACAAATTTATTTTTTAAATCTCTTACGTATTAATTGTTGAAATATTAATA
* * * * *
34715 AATTAATATTATTTTAATAT-GAATAAGCTAATATGAACAAAAATAATTGTTTTTATGACAAGAC
521 AATTAATATTATTTT-ATATCAAACAAACTAATATGAACAAAAACAATTG-TTTTATGACAAAAC
*
34779 AAAAGGTTATAATGATTCGAAATAAATAATTGTTCCAATAGTCATAACTATTCAAAATTATTCGG
584 AAAAGGTAATAATGATTCGAAATAAATAATTGTTCCAATAGTCATAACTATTCAAAATTATTCGG
34844 TAAACAGATTTGA
649 TAAACAGATTTGA
* * * **
34857 AATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAATACAAAAAGTTATAGCAATTTGAACT
1 AATAAGCTTGTATGAATAGAAAAAATTAGTTTATGACAA-A-AAAAAGTCATAACAATTTGAAAA
* * ** *
34922 AGATAATTGTTCAAATAGTCATAATTA-TTTGAACTTGTTTAGTAAACAGATTCATTTT-T-TAA
64 AGATAATTGTTCAAATAGTCATAATTATTTTGAACGTGTTCAAAAAACAAATTCATTTTATATAA
* *
34984 ATCT-CTCATTAATTTTTGAAATATTAATAAA-TTAGAATTATGTTATTTTG-AATAAGCTTGTA
129 ATCTACTCATTAATCTTTGAAATATTAATAAATTTA-AATTATGTTA-TTTGAAATAAGCCTGTA
* * ** *
35046 TGAACA-AAACAATTGTTTTGT-GAGAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATT
192 TGAACAGAAACAATTGTTTTATGGA-AAAACAAAAGGTCATAACAATTTGAAATAGATAATTATC
* * * *
35109 CAAATAGTCATAATTGTTTGCACTGGTCAAGCCAAA-AGATACATTTTTTAAATC-CATTACTTA
256 CAAATAGTCATAACTATTTGAACTGGT-AAGCCAAATAGATACATTTTTTAAATCTC-TTACTCA
* *
35172 TTAATTTTCAAAATATTAATAAAATTAGCATTATTTTA-TTCTAAATAAGATTATATGAACAT-A
319 TTAATTTTCAAAATAGTAAT-AAATTAGCATTATTTTATTTC-AAATAAGACTATATGAA-ATGA
* * * * * *
35235 AACAATTGTTTTATGATAAAAC-AAATGGTCATAATGATTTGAAGTAAATATTTGGTCAAATAGT
381 AACAATTGTTTTATGACAAAACAAAAT-GTCATAACGATTTGAAATAAATAATTAGTCAAACAGT
*
35299 TATAACTAATTAAAC-TGTAT-GGCAAACAAATTTATTTTTTAAATCTCTTACGTATTAATTTTT
445 TATAACTAATTAAACTTGT-TCGGCAAACAAATTTATTTTTTAAATCTCTTACGTATTAATTGTT
* * * *
35362 GAAATATTAATAAATTAATATTGTTTTATTTCAAACAAACTTATATGAACAAAAACATTTGTTTT
509 GAAATATTAATAAATTAATATTATTTTATATCAAACAAACTAATATGAACAAAAACAATTGTTTT
*
35427 ATGACAAAATAAAAGGTAATAA
574 ATGACAAAACAAAAGGTAATAA
35449 CAATTTGAAA
Statistics
Matches: 491, Mismatches: 88, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
658 29 0.06
659 212 0.43
660 139 0.28
661 9 0.02
662 35 0.07
663 25 0.05
664 42 0.09
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.39
Consensus pattern (661 bp):
AATAAGCTTGTATGAATAGAAAAAATTAGTTTATGACAAAAAAAAGTCATAACAATTTGAAAAAG
ATAATTGTTCAAATAGTCATAATTATTTTGAACGTGTTCAAAAAACAAATTCATTTTATATAAAT
CTACTCATTAATCTTTGAAATATTAATAAATTTAAATTATGTTATTTGAAATAAGCCTGTATGAA
CAGAAACAATTGTTTTATGGAAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATCCAAAT
AGTCATAACTATTTGAACTGGTAAGCCAAATAGATACATTTTTTAAATCTCTTACTCATTAATTT
TCAAAATAGTAATAAATTAGCATTATTTTATTTCAAATAAGACTATATGAAATGAAACAATTGTT
TTATGACAAAACAAAATGTCATAACGATTTGAAATAAATAATTAGTCAAACAGTTATAACTAATT
AAACTTGTTCGGCAAACAAATTTATTTTTTAAATCTCTTACGTATTAATTGTTGAAATATTAATA
AATTAATATTATTTTATATCAAACAAACTAATATGAACAAAAACAATTGTTTTATGACAAAACAA
AAGGTAATAATGATTCGAAATAAATAATTGTTCCAATAGTCATAACTATTCAAAATTATTCGGTA
AACAGATTTGA
Found at i:35457 original size:180 final size:178
Alignment explanation
Indices: 34851--35461 Score: 574
Period size: 180 Copynumber: 3.4 Consensus size: 178
34841 CGGTAAACAG
* * * * * * * * *
34851 ATTTGAAATAAGCTTGTATGAATAGAAAA-AATTATTTTATGACAATACAAAAAGTTATAGCAAT
1 ATTTCAAATAAACTTATATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAAT
* * * *
34915 TTGAACTAGATAATTGTTCAAATAGTCATAATTATTTGAACTTGTTTAGTAAACAGATTCATTTT
65 TTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAAC-TGTATGGCAAACAGATTCATTTT
*
34980 TTAAATCTC-T-C-ATTAATTTTTGAAATATTAATAAATTAGAATTATGTT
129 TTAAATCTCTTACTATTAATTTTTGAAATATTAATAAATTA-AATTATTTT
** * * * * * **
35028 ATTTTGAATAAGCTTGTATGAAC-AAAACAATTGTTTTGTGAGAAAACAAAAGTTCATAATGATT
1 ATTTCAAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATT
* * * * * *
35092 TGAAATAGATAATTATTCAAATAGTCATAATTGTTTGCACTGGTCAAGCCAAA-AGATACATTTT
66 TGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACT-GT-ATGGCAAACAGATTCATTTT
** *
35156 TTAAATC-CATTACTTATTAATTTTCAAAATATTAATAAAATTAGCATTATTTT
129 TTAAATCTC-TTAC-TATTAATTTTTGAAATATTAAT-AAATTA-AATTATTTT
* * * **
35209 A-TTCTAAATAAGA-TTATATGAACATAAACAATTGTTTTATGATAAAACAAATGGTCATAATGA
1 ATTTC-AAATAA-ACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAA
* * * * * * * * * *
35272 TTTGAAGTAAATATTTGGTCAAATAGTTATAACTAATTAAACTGTATGGCAAACAAATTTATTTT
64 TTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGTATGGCAAACAGATTCATTTT
*
35337 TTAAATCTCTTACGTATTAATTTTTGAAATATTAATAAATTAATATTGTTTT
129 TTAAATCTCTTAC-TATTAATTTTTGAAATATTAATAAATTAA-ATTATTTT
* * * *
35389 ATTTCAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAATAAAAGGTAATAACAATT
1 ATTTCAAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATT
35454 TGAAATAG
66 TGAAATAG
35462 TTTTGTAAAC
Statistics
Matches: 349, Mismatches: 68, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
175 6 0.02
176 81 0.23
177 24 0.07
178 1 0.00
179 1 0.00
180 96 0.28
181 73 0.21
182 67 0.19
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (178 bp):
ATTTCAAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACAATT
TGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGTATGGCAAACAGATTCATTTTTT
AAATCTCTTACTATTAATTTTTGAAATATTAATAAATTAAATTATTTT
Found at i:35735 original size:181 final size:179
Alignment explanation
Indices: 35479--38162 Score: 1713
Period size: 180 Copynumber: 15.0 Consensus size: 179
35469 AACAGAATTG
* * * * * * * *
35479 TTATGACTTTTTGTTTTGTAATAAAACAATTGTTTCTGTTCATACAAGCTTATTCG-GATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTATTTGAAATAAAAT
* * ** *
35543 AATATTAATTTATTAATATTTTGACCATTAACAATTGAAAGATTTAAAAAATAAATATGTTTACC
66 AATACTAATTTATTAATATTTTAAAAATTAATAA-T-AAAGATTTAAAAAATAAATATGTTTACC
* * * *
35608 AAATAAGTTCAAATAGTGAAGACTATTTGAATAATTATCTATTTCAAATAT
129 GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * * * *
35659 TTGTGACCTTCTATTTTGTAATAAAATAATTGTTTCAGTTAACATAAGTTTATTTGAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTATTTGAAATAAAAT
* *** * * * * *
35724 AGCT-CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAAATGAATCTATTT
66 A-ATACTAATTTATTAATATTTTAAAAATTAAT-AATAA-AG-ATT-TAAAAAATAAATATGTTT
* * * *
35788 ACCAAACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTTCAAA-AA
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* ***
35841 TTATGACCATTTGTTTTGTCATAAAATAATTAGTTTC-GTTCATGCAAGCTTATTT-AGAATAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATT-GTTTCAGTTCACATAAGCTTATTTGA-AATAAA
* * ** * *
35904 A-AATA-TAAATTTATTAAAACTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTT
64 ATAATACT-AATTTATTAATATTTTAAAAATTAAT-AATAAAGATTTAAAAAATAAATATGTTTA
** * *
35967 TTGAACACA-TTC-AATAGTTTTGATTATTTGAATAATTATCTATTTCAAAT-T
127 CCGAACA-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
** ** * * * *
36018 GTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTA-TTCATACAAGCTTATTCGAAATAAA
1 -TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTC-AGTTCACATAAGCTTATTTGAAATAAA
* * * *
36082 ATAATATTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGAGTTAAATAATAAATTTGTTT
64 ATAATACTAATTTATTAATATTT-TAAAAATTAATAA-T-AAAGATTTAAAAAATAAATATGTTT
* * * * * * *
36146 ACTGAGCAAGTTCAAATAGTTATTACTGTTTGAACAATTATATATTTCAAATCT
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* ** * * * *
36200 CTATGATATTTTGTTTTCTCATAAAATAATTG-TTCTA-TTCACAAAAGTTTATTTGGAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTC-AGTTCACATAAGCTTATTTGAAATAAAA
* * *
36263 TAATACTAATTTATTATTATTCTAAAAATTAATAAGTTAAAGATTTAAAAAATAAATCTGTTTAC
65 TAATACTAATTTATTAATATTTTAAAAATTAATAA--TAAAGATTTAAAAAATAAATATGTTTAC
* * * * ** *
36328 CGAACAAGTTTAAATAGTCATGTCCATTTGAATTGTTATTTATTTCAAATCA-
128 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT-AT
* * * * * ** *
36380 TTATGACATTTTGTTTTATTATAAAATAATTGTTTCTA-TTCATACAAAATTA-TTCAGAATAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTC-AGTTCACATAAGCTTATTTGA-AATAAA
* * * * * * *
36443 ATAATACCAATTTATTACTATTTTGAAAA-T--TAATAAGGATTT-TAAAATAAATGTGTTTTCC
64 ATAATACTAATTTATTAATATTTTAAAAATTAATAATAAAGATTTAAAAAATAAATATGTTTACC
* * * *
36504 AAAGC-AGTTCAAATAGTTAAGACTATTAGAATAATTATCTATTCCAAAT-T
129 GAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * * * * * * *
36554 ATTCTGATCTTTTGTTTAGTCAAAAAATAATTGTTTCAGTTCATATATGCTTATTCGAAATATAG
1 -TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTATTTGAAATAAAA
* * * * *
36619 TAATACTAATTTATTAA-AATTTAGAAAATTAATAA-GAA-ATTT-TAAAA-AAATTTATTTACC
65 TAATACTAATTTATTAATATTTTA-AAAATTAATAATAAAGATTTAAAAAATAAATATGTTTACC
* * * *
36679 GAATAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCA-
129 GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT-AT
* * * * * * * *
36730 TTATGACCTTTTTATTTTATCATAAAATAACTATTTCAGTACATAAAAG-TT-TTTCCAAAATAA
1 TTATGACC-TTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTATTT--GAAATAA
* ** * * ** *
36793 AATAATATTGCTTTATTAATA-TTTCAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCA-GTT
63 AATAATACTAATTTATTAATATTTTAAAAATTAATAA--TAAAGATTTAAAAAATAAAT-ATGTT
* * ** * * * *
36856 TATCAAATTA-TTCAAATAATTATGGCCATTTGAATAATTATCTACTTCAAATCA-
125 TACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT-AT
* * * * *
36910 TTATGAACTTTTGTTTTGTCATAAAACAATTGTTT---TTCATCATACAAACCTATTTGGAATAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCA-CAT--AAGCTTATTTGAAATAA
* * * *
36972 AATAATACTAATTTACTAATATTTCAAAAATTAAT-A-AAAGATTT-AAAAGTTAATATGTTTAC
63 AATAATACTAATTTATTAATATTTTAAAAATTAATAATAAAGATTTAAAAAATAAATATGTTTAC
* * * * *
37034 TGAATAAATTCAAATAGTT-TGACTATTTGAACAATTATATATTTCAAAT-T
128 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * * * * * **
37084 GTTATAACCTTTTGTTATCTCATAAAACAATTATTTCTA-TTCACACAAGTTTATTCAAAATAAA
1 -TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTC-AGTTCACATAAGCTTATTTGAAATAAA
* * * * *
37148 ATAATACTAATATAATAATATTCTAAAAATTAATAACTAAGAGATTTAAACAATAAATTTGTTTA
64 ATAATACTAATTTATTAATATTTTAAAAATTAATAA-TAA-AGATTTAAAAAATAAATATGTTTA
** * * * * * * * *
37213 TTGAACTAGTTCAAATATTTAAGGCTATATGAACAATTCTTTATTTCAAATCA-
127 CCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT-AT
* ** * * * ** * * *
37266 TTATGACATTTTGTTTTGTTGTAAAACAATTTTTTCATTTCTTAGTAA-CTTATTCGGAATAAAG
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACA-TAAGCTTATTTGAAATAAAA
* * * * *
37330 TAAAACAAATTTATTAATATTTTAAAACTTAATAAGTAAGAGATTTAAAAAAAAAACAATTTCGT
65 TAATACTAATTTATTAATATTTTAAAAATTAATAA-TAA-AGATTT--AAAAAATA-AATAT-GT
* * * ** **
37395 TTACCTAACCAGTTCAAATAATTATGACTATTTGAGCAATTATCTATTTCAAATCG
124 TTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
** * * * ** * * *
37451 TTATGTTCTTTTATTTTGTCATAAAACAAATGTTTTTGTACATATAAG-TT-TGTTCAGAATAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTAT-TTGA-AATAAA
* * ** * * * *
37514 ATAATATTAATTTATTAATATTTTGAAAATTAGGAA-GAA-ATTTAAAAAGTAAA-ACTATTTAT
64 ATAATACTAATTTATTAATATTTTAAAAATTAATAATAAAGATTTAAAAAATAAATA-TGTTTAC
** * * * *
37576 TAAACTAGTTCAATTAGTTATAACTATTTGAATAATTATTTATTTCAAATA-
128 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * *
37627 TTATGACCATTTGTATTGTCATAAAATAATTACTTT-TGTT--CATACAGTCTTATTTGAAATAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATT-GTTTCAGTTCACATA-AG-CTTATTTGAAATAA
* * * * *
37689 AGTAATACTAATTTATAAATATTTT-GAAATTAATAAGTAATAGATTTAAAAAATTAATCA-ATT
63 AATAATACTAATTTATTAATATTTTAAAAATTAATAA-TAA-AGATTTAAAAAATAAAT-ATGTT
** * *
37752 GGCCTG-ACCAGTGT-AAATAGTTATGACTATTTAAATAATTATCTATTTCAAAT-T
125 TACC-GAACAAGT-TCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * * * *
37806 ATTATGACCTTTTGTTTTATCACAAAACAATTGTTTCTG-TC-TATACTAGCTTATTTCAAATAA
1 -TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATA--AGCTTATTTGAAATAA
* * * * * * * * *
37869 TATAATTCTATTTTTTTAATATTCTAAAAATTAAT-A-AGAGATTTAAAAAATGAATCTGTTTAT
63 AATAATACTAATTTATTAATATTTTAAAAATTAATAATAAAGATTTAAAAAATAAATATGTTTAC
* * * * **
37932 CGAATAAGTACAAATAATTATGACTATTTGAATAATTATCTATTTCTAATCG
128 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
* * * * * * * *
37984 CTATAACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTA-TTCATACAAGCTTATTTCAAATAAA
1 TTATGACCTTTTGTTTTGTCATAAAA-TAATTGTTTC-AGTTCACATAAGCTTATTTGAAATAAA
* * * * * * *
38047 ATTATACAAATTTATTAATA-TTCATACAACTAATAAGTAAAAGATTTAAAAAATAAATGTATTT
64 ATAATACTAATTTATTAATATTTTA-AAAATTAATAA-T-AAAGATTTAAAAAATAAATATGTTT
* * * * *
38111 ATCGAATAAGTTTAAATAATTATGACTATTTGAATAATTATTTATTTCAAAT
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAAT
38163 TGTTATGTTT
Statistics
Matches: 1947, Mismatches: 441, Indels: 231
0.74 0.17 0.09
Matches are distributed among these distances:
174 11 0.01
175 307 0.16
176 151 0.08
177 218 0.11
178 99 0.05
179 157 0.08
180 381 0.20
181 373 0.19
182 56 0.03
183 73 0.04
184 11 0.01
185 110 0.06
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCACATAAGCTTATTTGAAATAAAAT
AATACTAATTTATTAATATTTTAAAAATTAATAATAAAGATTTAAAAAATAAATATGTTTACCGA
ACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATAT
Found at i:36850 original size:356 final size:352
Alignment explanation
Indices: 35474--38162 Score: 1674
Period size: 356 Copynumber: 7.5 Consensus size: 352
35464 TTGTAAACAG
* * * * *
35474 AATTGTTATGA-CTTTTTGTTTTGTAATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGG-A
1 AATTATTATGATC-TTTTGTTTTGTCATAAAATAATTGTTTC-ATTCATAC-AGCTTATTTGGAA
* * * * ** * * * *
35537 TAAAATAATATTAATTTATTAATATTTTGACCATTAACAATTGAAAGATTTAAAAAATAAATATG
63 TAAAGTAATACTAATTTATTAA-AATTTAAAAATTAATAA--GTAAGATTT-TAAAA-AAATTTG
* * * * * *
35602 TTTACCAAATAAGTTCAAATAGTGAAGACTATTTGAATAATTATCTATTTCAAAT-ATTTGTGAC
123 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATGAC
* * * * * * ** *
35666 CTTCTATTTTGTAATAAAATAATTGTTTC-AGTTAACAT--AAGTTTATTTGAAATAAAATAGCT
187 CTTTTGTTTTATCATAAAACAATTATTTCTA--T-ACATAAAAGTTTATTCAAAATAAAATA-AT
* ** * * * * *
35728 -CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAAATGAATCTATTTACCA
248 ATTAATTTATTAATATTTC-AAAATTAAT-AAT-AGAG-ATT-TAAAAAATAAATCTGTTTATCA
* * * *
35792 AACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTTCA
308 AACTAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCA
* * * * * *
35837 AA-AATTATGACCATTTGTTTTGTCATAAAATAATTAGTTTCGTTCATGCAAGCTTATTTAGAAT
1 AATTATTATGATCTTTTGTTTTGTCATAAAATAATT-GTTTCATTCATAC-AGCTTATTTGGAAT
* ** * * * *
35901 AAA-AAATA-TAAATTTATTAAAACTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGT
64 AAAGTAATACT-AATTTATTAAAA-TTTAAAAATTAATAAGT-AAGATTT-TAAAA-AAATTTGT
*** * * * ** *
35964 TTTTTGAACACA-TTC-AATAGTTTTGATTATTTGAATAATTATCTATTTCAAATTGTTATGACA
124 TTACCGAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * *
36027 ATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCGAAATAAAATAATATTAA
188 TTTTGTTTTATCATAAAACAATTATTTCTATACATAAAAGTTTATTCAAAATAAAATAATATTAA
* * * * * * *
36092 TTTATTAATATTTCTAAAATTAATAAGTAAAAGAGTTAAATAATAAATTTGTTTA-CTGAGCAAG
253 TTTATTAATATTTC-AAAATTAATAA-T-AGAGATTTAAAAAATAAATCTGTTTATC-AAACTAG
** * * *
36156 TTCAAATAGTTATTACTGTTTGAACAATTATATATTTCA
314 TTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCA
* * * * * *
36195 AATCT-CTATGATATTTTGTTTTCTCATAAAATAATTG-TTCTATTCACAAAAGTTTATTTGGAA
1 AAT-TATTATGATCTTTTGTTTTGTCATAAAATAATTGTTTC-ATTCA-TACAGCTTATTTGGAA
* ** * *
36258 TAAAATAATACTAATTTATTATTATTCTAAAAATTAATAAGTTAAAGATTTAAAAAATAAATCTG
63 TAAAGTAATACTAATTTATTAAAATT-TAAAAATTAATAAG-T-AAGATTT-TAAAA-AAATTTG
* * * * *** * *
36323 TTTACCGAACAAGTTTAAATAGTCATGTCCATTTGAATTGTTATTTATTTCAAATCATTATGACA
123 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC
* * * * * * **
36388 TTTTGTTTTATTATAAAATAATTGTTTCTATTCATACAAA-ATTATTCAGAATAAAATAATACCA
188 TTTTGTTTTATCATAAAACAATTATTTCTATACATA-AAAGTTTATTCAAAATAAAATAATATTA
* * * *
36452 ATTTATTACTATTTTGAAAATTAAT-A-AG-GATTT-TAAAATAAATGTGTTT-TCCAAAGC-AG
252 ATTTATTAATA-TTTCAAAATTAATAATAGAGATTTAAAAAATAAATCTGTTTAT-CAAA-CTAG
* *
36511 TTCAAATAGTTAAGACTATTAGAATAATTATCTATTCCA
314 TTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCA
* * * * * *
36550 AATTATTCTGATCTTTTGTTTAGTCAAAAAATAATTGTTTCAGTTCATATATGCTTATTCGAAAT
1 AATTATTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCA-TTCATACA-GCTTATTTGGAAT
* *
36615 ATAGTAATACTAATTTATTAAAATTTAGAAAATTAATAAG-AA-ATTTTAAAAAAATTTATTTAC
64 AAAGTAATACTAATTTATTAAAATTTA-AAAATTAATAAGTAAGATTTTAAAAAAATTTGTTTAC
* * *
36678 CGAATAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTATGACCTTTTT
128 CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC-TTTT
* * * **
36743 ATTTTATCATAAAATAACTATTTC-AGTACATAAAAGTTT-TTCCAAAATAAAATAATATTGCTT
192 GTTTTATCATAAAACAATTATTTCTA-TACATAAAAGTTTATT-CAAAATAAAATAATATTAATT
* * * * *
36806 TATTAATATTTCAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCAGTTTATCAAATTA-TTCA
255 TATTAATATTTCAAAATTAATAA--TAGAGATTTAAAAAATAAATCTGTTTATCAAACTAGTTCA
* * * * *
36870 AATAATTATGGCCATTTGAATAATTATCTACTTCA
318 AATAGTTAAGACTATTTGAATAATTATCTATTTCA
* * * * *
36905 AATCATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCA-TCATACAAACCTATTTGGAA
1 AATTATTATGATCTTTTGTTTTGTCATAAAATAATTG--TTTCATTCATAC-AGCTTATTTGGAA
* * * * *
36969 TAAAATAATACTAATTTACTAATATTTCAAAAATTAATAA--AAGA-TTTAAAAGTTAATATGTT
63 TAAAGTAATACTAATTTATTAAAATTT-AAAAATTAATAAGTAAGATTTTAAAA--AAATTTGTT
* * * * ** *
37031 TACTGAATAAATTCAAATAGTT-TGACTATTTGAACAATTATATATTTCAAATTGTTATAACCTT
125 TACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTT
* * * * * * *
37095 TTGTTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTCAAAATAAAATAATACTAATA
190 TTGTTTTATCATAAAACAATTATTTCTATACATAAAAGTTTATTCAAAATAAAATAATATTAATT
* * * * **
37160 TAATAATATTCTAAAAATTAATAACTAAGAGATTTAAACAATAAATTTGTTTATTGAACTAGTTC
255 TATTAATATT-TCAAAATTAATAA-T-AGAGATTTAAAAAATAAATCTGTTTATCAAACTAGTTC
* * * * * *
37225 AAATATTTAAGGCTATATGAACAATTCTTTATTTCA
317 AAATAGTTAAGACTATTTGAATAATTATCTATTTCA
* ** * * * * * *
37261 AATCATTATGA-CATTTTGTTTTGTTGTAAAACAATTTTTTCATTTCTTAGTAACTTATTCGGAA
1 AATTATTATGATC-TTTTGTTTTGTCATAAAATAATTGTTTCA-TTCATA-CAGCTTATTTGGAA
* * * * *
37325 TAAAGTAAAACAAATTTATTAATATTTTAAAACTTAATAAGTAAGAGATTTAAAAAAAAAACAAT
63 TAAAGTAATACTAATTTATTAA-AATTTAAAAATTAATAAGT-A-AGATTT----TAAAAA-AAT
* * * * *
37390 TTCGTTTACCTAACCAGTTCAAATAATTATGACTATTTGAGCAATTATCTATTTCAAATCGTTAT
120 TT-GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT
** * * * * * * * * *
37455 GTTCTTTTATTTTGTCATAAAACAAATGTTTTTGTACATATAAGTTTGTTCAGAATAAAATAATA
184 GACCTTTTGTTTTATCATAAAACAATTATTTCTATACATAAAAGTTTATTCAAAATAAAATAATA
* ** * * * * *
37520 TTAATTTATTAATATTTTGAAAATT-AGGA-AGAAATTTAAAAAGTAAAACTATTTATTAAACTA
249 TTAATTTATTAATA-TTTCAAAATTAATAATAGAGATTTAAAAAATAAATCTGTTTATCAAACTA
* *
37583 GTTCAATTAGTTATA-ACTATTTGAATAATTATTTATTTCA
313 GTTCAAATAGTTA-AGACTATTTGAATAATTATCTATTTCA
* * * * ** *
37623 AA-TATTATGACCATTTGTATTGTCATAAAATAATTACTTTTGTTCATACAGTCTTATTTGAAAT
1 AATTATTATGATCTTTTGTTTTGTCATAAAATAATT-GTTTCATTCATACAG-CTTATTTGGAAT
** * ***
37687 AAAGTAATACTAATTTA-TAAATATTTTGAAATTAATAAGTAATAGATTTAAAAAATTAATCAAT
64 AAAGTAATACTAATTTATTAAA-ATTTAAAAATTAATAAGT-A-AGATTTTAAAAA--AATTTGT
** * * * *
37751 TGGCCTG-ACCAGTGT-AAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGAC
124 TTACC-GAACAAGT-TCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* * * ** * *
37814 CTTTTGTTTTATCACAAAACAATTGTTTCTGT-CTATACTAGCTTATTTC-AAATAATATAAT-T
187 CTTTTGTTTTATCATAAAACAATTATTTCTATAC-ATAAAAGTTTA-TTCAAAATAAAATAATAT
* * * * *
37876 CTATTTTTTTAATATTCTAAAAATTAAT-A-AGAGATTTAAAAAATGAATCTGTTTATCGAA-TA
250 -TAATTTATTAATATT-TCAAAATTAATAATAGAGATTTAAAAAATAAATCTGTTTATCAAACT-
* * * *
37938 AGTACAAATAATTATGACTATTTGAATAATTATCTATTTCT
312 AGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCA
*** * * * * * **
37979 AATCGCTATAACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTATTCATACAAGCTTATTTCAAA
1 AATTATTATGATCTTTTGTTTTGTCATAAAA-TAATTGTTTC-ATTCATAC-AGCTTATTTGGAA
* * * * * * * * * *
38043 TAAAATTATACAAATTTATTAATATTCATACAACTAATAAGTAAAAGATTTAAAAAATAAATGTA
63 TAAAGTAATACTAATTTATTAAAATTTA-AAAATTAATAAGT--AAGATTT-TAAAA-AAATTTG
* * * * * *
38108 TTTATCGAATAAGTTTAAATAATTATGACTATTTGAATAATTATTTATTTCAAAT
123 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
38163 TGTTATGTTT
Statistics
Matches: 1830, Mismatches: 394, Indels: 209
0.75 0.16 0.09
Matches are distributed among these distances:
350 75 0.04
351 59 0.03
352 4 0.00
353 2 0.00
354 76 0.04
355 277 0.15
356 391 0.21
357 80 0.04
358 149 0.08
359 67 0.04
360 172 0.09
361 195 0.11
362 137 0.07
363 14 0.01
364 4 0.00
365 25 0.01
366 101 0.06
367 2 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (352 bp):
AATTATTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCATTCATACAGCTTATTTGGAATAA
AGTAATACTAATTTATTAAAATTTAAAAATTAATAAGTAAGATTTTAAAAAAATTTGTTTACCGA
ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
TATCATAAAACAATTATTTCTATACATAAAAGTTTATTCAAAATAAAATAATATTAATTTATTAA
TATTTCAAAATTAATAATAGAGATTTAAAAAATAAATCTGTTTATCAAACTAGTTCAAATAGTTA
AGACTATTTGAATAATTATCTATTTCA
Done.