Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167829.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87344
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
File 2 of 2
Found at i:37799 original size:16 final size:17
Alignment explanation
Indices: 37778--37810 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37768 ATAGTTATGA
37778 CTATTT-AAATAATTAT
1 CTATTTCAAATAATTAT
*
37794 CTATTTCAAATTATTAT
1 CTATTTCAAATAATTAT
37811 GACCTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
CTATTTCAAATAATTAT
Found at i:37976 original size:16 final size:17
Alignment explanation
Indices: 37944--37976 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
37934 AATAAGTACA
37944 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
37962 AATAATTAT-CTATTT
1 AATAATTATACTATTT
37977 CTAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:38959 original size:17 final size:16
Alignment explanation
Indices: 38919--38968 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
38909 ATCTATACAG
38919 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
38934 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
38948 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
38966 TTA
1 TTA
38969 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:39123 original size:26 final size:26
Alignment explanation
Indices: 39094--39158 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
39084 AATACTTATA
39094 ATTTATTATTAATGATTTGAA-TATTG
1 ATTTATTATTAAT-ATTTGAATTATTG
* *
39120 ATTTTAATT-TAAATATTTTAATTATTG
1 A-TTT-ATTATTAATATTTGAATTATTG
39147 ATTT-TTATTAAT
1 ATTTATTATTAAT
39159 TAATAGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
24 2 0.06
25 4 0.12
26 10 0.31
27 13 0.41
28 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
ATTTATTATTAATATTTGAATTATTG
Found at i:39428 original size:3 final size:3
Alignment explanation
Indices: 39410--39459 Score: 55
Period size: 3 Copynumber: 15.7 Consensus size: 3
39400 TAATTTAATT
* *
39410 TTA TTA TTT TTCA TTA TTA TTA TTA TTA TTA TTA TTTA TCTA TTA ATA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA
39458 TT
1 TT
39460 TTTTATTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 32 0.80
4 8 0.20
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:42848 original size:15 final size:15
Alignment explanation
Indices: 42828--42858 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
42818 TGTTAACTGT
*
42828 AATGAATGAGAATGC
1 AATGAATGAAAATGC
42843 AATGAATGAAAATGC
1 AATGAATGAAAATGC
42858 A
1 A
42859 TGTATGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (15 bp):
AATGAATGAAAATGC
Found at i:43906 original size:52 final size:52
Alignment explanation
Indices: 43840--43949 Score: 202
Period size: 52 Copynumber: 2.1 Consensus size: 52
43830 ACTGTTCTGC
* *
43840 CCCAAACTACCTTCTTACTAGAAGTGGTGCATAACTTGTTACTTCTCATAAA
1 CCCAAACTAACTTCTTACTAGAAGTGGTGCATAACTTGTTACTCCTCATAAA
43892 CCCAAACTAACTTCTTACTAGAAGTGGTGCATAACTTGTTACTCCTCATAAA
1 CCCAAACTAACTTCTTACTAGAAGTGGTGCATAACTTGTTACTCCTCATAAA
43944 CCCAAA
1 CCCAAA
43950 AGTGGGACCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 56 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (52 bp):
CCCAAACTAACTTCTTACTAGAAGTGGTGCATAACTTGTTACTCCTCATAAA
Found at i:46355 original size:59 final size:59
Alignment explanation
Indices: 46092--46411 Score: 432
Period size: 61 Copynumber: 5.3 Consensus size: 59
46082 AACATGAAAC
*
46092 TTTTTA-TTTTAAGAAAAATTGATACTTTTC-ACTTTTCCTCAAAAATATTTTTTTTTTAGAA
1 TTTTTATTTTTAAGGAAAATTGATAC-TTTCAACTTTTCCTCAAAAATA---TTTTTTTAGAA
*
46153 TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCGAAAATATATTTTTTTAGAA
1 TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATATTTTTTTAGAA
** * *
46214 TTTTTATTTTTAAAAAAAATTGATACTTTCAACTTTCCCTCAAAAATATTTTTTTAAAAA
1 TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT-AGAA
**
46274 AATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAA
1 TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAA
* * *
46333 ATTTTATTTTCAAGGAAAATTGATTCTTTCAACTTTTCCTCAAAAATATATTTTTTTAGAA
1 TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATATTTTTTTAGAA
46394 TTTTTA-TTTTAA-GAAAAT
1 TTTTTATTTTTAAGGAAAAT
46412 CATTAAAAAA
Statistics
Matches: 234, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
59 57 0.24
60 66 0.28
61 77 0.33
62 27 0.12
63 4 0.02
64 3 0.01
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.48
Consensus pattern (59 bp):
TTTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAA
Found at i:46800 original size:18 final size:18
Alignment explanation
Indices: 46773--46807 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
46763 ACTGCTTCTT
46773 TCCCTTTTTCT-CTCCTC
1 TCCCTTTTTCTCCTCCTC
46790 TCCCTTTTTTCTCCTCCT
1 TCCC-TTTTTCTCCTCCT
46808 TCTTTCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (18 bp):
TCCCTTTTTCTCCTCCTC
Found at i:46802 original size:16 final size:17
Alignment explanation
Indices: 46773--46805 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46763 ACTGCTTCTT
46773 TCCCTTTTTCTCTCCTC
1 TCCCTTTTTCTCTCCTC
46790 TCCCTTTTT-TCTCCTC
1 TCCCTTTTTCTCTCCTC
46806 CTTCTTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (17 bp):
TCCCTTTTTCTCTCCTC
Found at i:47426 original size:3 final size:3
Alignment explanation
Indices: 47418--47453 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
47408 TTACTAGATA
*
47418 AAT AAT AAT AAT AAT AAT AAT AAT GAAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AA
47454 AATTAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 28 0.93
4 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:47712 original size:58 final size:58
Alignment explanation
Indices: 47637--47781 Score: 235
Period size: 58 Copynumber: 2.6 Consensus size: 58
47627 AATAAATTAA
47637 TACTACTCTATTAATATTTTAAAAATTAATAATAGATCTAAAAAATAAATCTTTTTAG
1 TACTACTCTATTAATATTTTAAAAATTAATAATAGATCTAAAAAATAAATCTTTTTAG
47695 TACTACTCTATTAATATTTTAAAAATTAATAATAGATCTAAAAAATAAATCTTTTTAG
1 TACTACTCTATTAATATTTTAAAAATTAATAATAGATCTAAAAAATAAATCTTTTTAG
** *
47753 -A-TA-TCTATTAAT-TAATAAAAATCAATAAT
1 TACTACTCTATTAATATTTTAAAAATTAATAAT
47782 TAAAATATTT
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
54 14 0.17
55 9 0.11
56 2 0.02
57 1 0.01
58 58 0.69
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.41
Consensus pattern (58 bp):
TACTACTCTATTAATATTTTAAAAATTAATAATAGATCTAAAAAATAAATCTTTTTAG
Found at i:48967 original size:16 final size:17
Alignment explanation
Indices: 48946--48978 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48936 TAGCGATTAG
48946 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
48962 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
48979 TATACTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:49144 original size:16 final size:17
Alignment explanation
Indices: 49112--49144 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49102 ACAAAATGTC
49112 ATAATGATTTGAAATAG
1 ATAATGATTTGAAATAG
*
49129 ATAATTATTT-AAATAG
1 ATAATGATTTGAAATAG
49145 TCATAACTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
ATAATGATTTGAAATAG
Found at i:49479 original size:356 final size:347
Alignment explanation
Indices: 48826--51138 Score: 1213
Period size: 356 Copynumber: 6.5 Consensus size: 347
48816 ATACATTTAT
* * * * **
48826 TTTTTAAATCTTTTACTTATT-AGTTTTATGAATATTAATAAATTTGTA-TAATTTATTTGAAAT
1 TTTTTAAATC-TTTACTTATTAAGTTTTA-AAATATTTATAAATTAGTATTACTTTATTCCAAAT
* * ** * * * * * *
48889 AAG-CTTGTATGAATAGAAATTTTGTTTTAGGACAAAGCAAAAGGTTATAGCGATTAGAAATAGA
64 TAGAC-TGTATGAA-AAAAAAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAA
* * * * *
48953 TAATTATTCAAATAGTCATAATTATTT-ATACTTGTTT-GATAAACAGATTCATTTTTTAAA-TC
127 TAATTGTTCAAATAGTTATAA-TATTTGA-ACTAGTTTAG-TAAA-TGATTTA-TTTTTAAACTC
* * * * *
49015 -TCTTATTAATTTTTAGAATATTAAAAAAATAGA-ATTATATTATTTC-AAATAAGC-TAGTATA
187 TTCTTCTTAA-TTTTAAAATATTAATAAATTA-ATATTATTTTATTTCGAAA-AA-CTTA-TAT-
* * * * * *
49076 G-CCAGAAACAATTGTTTTGTGATAAAACAAAATGTCATAATGATTTGAAATAGATAATTATTTA
246 GTACA-AAACAATTGTTTTATG--AAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTA
*
49140 AATAGTCATAACTATTTACACTGGTCAGGCT-AATTGATTCAC
308 AATAGTCATAACTATTTA-ACTGGTCAGG-TAAACTGATT-AC
* *
49182 TTTTTAAATCTATTACTTATTAA-TTTCAAAATATTTATAAATTAGTATTACTTTATTTCAAATT
1 TTTTTAAATCT-TTACTTATTAAGTTTTAAAATATTTATAAATTAGTATTACTTTATTCCAAATT
* * * * *
49246 AGACTGTATGAACAAAAGTAATTATTTTATGACAATACAAATGGTCATAAGGATTTGAAATAAAT
65 AGACTGTATGAA-AAAA-AAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAT
* *
49311 AATTGTTCAAATAGTTATAACTAATTGAACTAGTTTAGTAAATGGTTTTACTTTTTAAA-T-TTC
128 AATTGTTCAAATAGTTATAA-TATTTGAACTAGTTTAGTAAAT-GATTTA-TTTTTAAACTCTTC
* *
49374 TTCTTAATTTTCAAAATATTAATAAATTAATATTGTTTTATTCCGAACAAACTTATATGTACAAA
190 TTCTTAATTTT-AAAATATTAATAAATTAATATTATTTTATTTCGAA-AAACTTATATGTACAAA
* ** * * *
49439 ACATTTGTTTTATTGCAAAATAAAAGAACATAACGATTTGAAATAGATAATTGCTCAAATAATCA
253 ACAATTGTTTTA-TG-AAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGTCA
* * *
49504 TAATTATTTGAACTGGTTAGGTAAACTGAATTATTT
316 TAACTATTT-AACTGGTCAGGTAAACTG-ATTA--C
* * * * *
49540 TTTTTAAATCTCTTACTTATTAAGTTTTAAAATATTAATAAATTTGTTTTACTTTATTCCGAATA
1 TTTTTAAATCT-TTACTTATTAAGTTTTAAAATATTTATAAATTAGTATTACTTTATTCCAAATT
* **
49605 AGTTAC--TAAGAAATGAAAAAATTGTTTTACAACAAAACAAAAGGTCATAACGATTTGAAATAA
65 AG--ACTGTATGAAA--AAAAAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
* * * **
49668 AGAATTGTTCATATAGCCTTA-AATATTTGAACTAGTTCAGTAAACAAATTTATTGTTTAAATCT
126 ATAATTGTTCAAATAG--TTATAATATTTGAACTAGTTTAGTAAA-TGATTTATT-TTTAAA-CT
* * * * * * * * *
49732 CTTAGTTATTAATTTTTAGAATATTATTATATTAGTATTATTTTATTTCGAATAAACTTGTGTGA
186 CTT-CTTCTTAA-TTTTAAAATATTAATAAATTAATATTATTTTATTTCGAA-AAACTTATATGT
* * * * * *
49797 ATAGAAATAATTGTTTTATGAGATAACAAAAGGTTATAACAATTTGAAATATATAATTGTTTAAA
248 ACA-AAACAATTGTTTTATGA-A-AATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAA
* * *
49862 TAGTCA-AACTATTTAAATTTGTTCA-GTAAACAGATTAAC
310 TAGTCATAACTATTT-AA-CTGGTCAGGTAAACTGATT-AC
* * *
49901 -TTTTAAATC-TT--TTATTAATTTTTGAAATA-TTAGTAAATTAGTATTATTTTATTCCAAA-T
1 TTTTTAAATCTTTACTTATTAAGTTTTAAAATATTTA-TAAATTAGTATTACTTTATTCCAAATT
** * * * * *
49960 AGGTTTGTATGATGAAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTTAAATAGA
65 A-GACTGTATGA--AAAAAAAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAA
* * ** *
50025 TAATTATTCAAATGGCCATAATTATTTGAA-TAATTT-GATAAACTGATTTATTTTTTAAAACTC
127 TAATTGTTCAAATAGTTATAA-TATTTGAACTAGTTTAG-TAAA-TGATTTA-TTTTT-AAACT-
** * ** * *
50088 CAACTTCTTAATTTTGAAATATTAATAAAGCAATATTATTTTATTTTGGAAAAACTTTTATGTAC
186 CTTCTTCTTAATTTTAAAATATTAATAAATTAATATTATTTTA-TTTCGAAAAACTTATATGTAC
* * *
50153 TGAAACAATTATTTTATGATAAAATAAAAGGTCATAACGATTTTAAATAGATAATTGTTTAAATA
250 -AAAACAATTGTTTTATG--AAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATA
** *
50218 GTCATAACTATTTGAACTTATTC-GGTAAA-TAAATT--
312 GTCATAACTATTT-AAC-TGGTCAGGTAAACT-GATTAC
* * * * *
50253 TTTTTAAA-ATTT-CTTATTAA-TTTTCTAAAT-TTTAATAAATTAGTATTACTATATTTCGAAT
1 TTTTTAAATCTTTACTTATTAAGTTTT-AAAATATTT-ATAAATTAGTATTACTTTATTCCAAAT
* * * * * * * * * * * ** * *
50314 AAG-CATATATCAACTGAAATAATTATTTTTTGACTAAACAAAAGATTAGAATAATTTGGAATAG
64 TAGAC-TGTATGAA--AAAAAAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
* * * * ** *
50378 ATAATTATTCTAATAGTCT-TAACTATTTGAACT-GCTTTGGAAAACACATTTA-TTTTAAAATC
126 ATAATTGTTCAAATAGT-TATAA-TATTTGAACTAG-TTTAGTAAA-TGATTTATTTTTAAACTC
* * ** * ** * * *
50440 --CTTATTAATTTTCAAAATAGTAATAAATTGGTATTATTTTATTTTGAATAATTTTGTATGAAT
187 TTCTTCTTAATTTT-AAAATATTAATAAATTAATATTATTTTATTTCGAA-AAACTTATATGTAC
* * * * * * ** * *
50503 AGAAACAATTATTTTATAATAAAACAAAATGTCATAACGACTTGAAATAAATAACAGTTCAAATG
250 A-AAACAATTGTTTTAT--GAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATA
* * * * *
50568 GACATGACTATTTAAACTTGTTC-GGTAAACAGATTTAT
312 GTCATAACTATTT-AAC-TGGTCAGGTAAACTGA-TTAC
* * * * * *
50606 TTTTTAAATCTTTAACTTATTAATTTTTAGAATAATAATAAATTAGTATTATTTTATTCCAAATA
1 TTTTTAAATCTTT-ACTTATTAAGTTTTAAAATATTTATAAATTAGTATTACTTTATTCCAAATT
* * * * * ** *
50671 AAACTTTTGTGAATAGAACAATTGTTTTATGACAAAACAAAATATCATAGA-GATTTGAAATATA
65 AGAC-TGTATGAA-AAAAAAATTGTTTTATGACAAAACAAAAGGTCATA-ACGATTTGAAATAAA
* * * * * ** *
50735 TAATTGTTCAAACAGTAATAACTATTTGAACTTGCTCAGTAAACAAATTTATTATTTAAATCTTT
127 TAATTGTTCAAATAGTTATAA-TATTTGAACTAGTTTAGTAAA-TGATTTATT-TTTAAA-CTCT
* * * * * *
50800 TACTTATTAATTTTAGAAATATTAATAAATTAATATTATTTTGTTTCGAATAAGCTTGTATGAAT
188 T-CTTCTTAATTTTA-AAATATTAATAAATTAATATTATTTTATTTCGAA-AAACTTATATGTAC
* * * * *
50865 AGAAATAATTGGTTTATGACAAA-ACAAATTGTCATAACAATTTGAAATAGATAATTGTTCAAAT
250 A-AAACAATTGTTTTATGA-AAATA-AAA-GGTCATAACGATTTGAAATAGATAATTGTTTAAAT
* * * **
50929 AATCAAAACTATTGAA-TGTGTTCA-AAAAACAT-ATTTA-
311 AGTCATAACTATTTAACTG-G-TCAGGTAAAC-TGA-TTAC
* * * ** * * *
50966 TTTTTAAAATTTTTATTTATTAATTTTTGGAGT-TTTAATAAATTTA-TATTATTTTATTCTAAA
1 TTTTT-AAATCTTTACTTATTAAGTTTTAAAATATTT-ATAAA-TTAGTATTACTTTATTCCAAA
* * * * * **
51029 TAAG-CTTGCATGAACAAAACTAATTATTTTATGACAAAACAAATGGTCAT-ATTATTTTGAAAT
63 TTAGAC-TGTATGAA-AAAA-AAATTGTTTTATGACAAAACAAAAGGTCATAACGA-TTTGAAAT
* * * * * *
51092 AGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTGGTAAAT
124 AAATAATTGTTCAAATAGTTATAA-TATTTGAACTAGTTTAGTAAAT
51139 TTTCCTTAAA
Statistics
Matches: 1527, Mismatches: 318, Indels: 221
0.74 0.15 0.11
Matches are distributed among these distances:
349 17 0.01
350 108 0.07
351 3 0.00
352 5 0.00
353 25 0.02
354 199 0.13
355 92 0.06
356 352 0.23
357 140 0.09
358 44 0.03
359 138 0.09
360 132 0.09
361 36 0.02
362 112 0.07
363 66 0.04
364 58 0.04
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (347 bp):
TTTTTAAATCTTTACTTATTAAGTTTTAAAATATTTATAAATTAGTATTACTTTATTCCAAATTA
GACTGTATGAAAAAAAAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAAT
TGTTCAAATAGTTATAATATTTGAACTAGTTTAGTAAATGATTTATTTTTAAACTCTTCTTCTTA
ATTTTAAAATATTAATAAATTAATATTATTTTATTTCGAAAAACTTATATGTACAAAACAATTGT
TTTATGAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTTAAATAGTCATAACTATTTA
ACTGGTCAGGTAAACTGATTAC
Found at i:49811 original size:181 final size:180
Alignment explanation
Indices: 48756--51126 Score: 1643
Period size: 181 Copynumber: 13.3 Consensus size: 180
48746 ATGAGAAAAT
* * * * * *
48756 ATAACAATTTGAAATAAATAATTATTCAAATAGTCATAATTATTTAAACTTA-TTC-G-AAAAAT
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TAGTTCAGTAAACA-
* * * * *
48818 ACATTTATTTTTTAAATCTTTTACTTATT-AGTTTTATGAATATTAATAAATTTGTA-TAATTTA
64 A-ATTTA-TTTTTAAATCTCTTACTTATTAATTTTTA-AAATATTAATAAATTAGTATTATTTTA
* ** * * *
48881 TTT-GAAATAAGCTTGTATGAATAGAAA-TTTTGTTTTAGGACAAAGCAAAAGGTT
126 TTTCG-AATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * * *
48935 ATAGCGATTAGAAATAGATAATTATTCAAATAGTCATAATTATTT-ATACTTGTT-TGATAAACA
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA-ACTAGTTCAG-TAAACA
* * * * * * *
48998 GATTCATTTTTTAAA--TC-T-CTTATTAATTTTTAGAATATTAAAAAAATAGAATTATATTATT
64 AATTTA-TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATT
* * * ** * * *
49059 TCAAATAAGCTAGTAT-AGCCAGAAACAATTGTTTTGTGATAAAACAAAATGTC
128 TCGAATAAACTTGTATGA-ATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * *
49112 ATAATGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTT-ACACT-GGTCAGGCT-AAT
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA-ACTAGTTCA-G-TAAAC
** * * * * *
49174 TGATTCACTTTTTAAATCTATTACTTATTAA-TTTCAAAATATTTATAAATTAGTATTACTTTAT
63 AAATTTA-TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTAT
* * * * * * *
49238 TTCAAATTAGAC-TGTATGAACA-AAAGTAATTATTTTATGACAATACAAATGGTC
127 TTCGAA-TAAACTTGTATGAATAGAAA-CAATTGTTTTATGACAAAACAAAAGGTC
* * * * * ****
49292 ATAAGGATTTGAAATAAATAATTGTTCAAATAGTTATAACTAATTGAACTAGTTTAGTAAATGGT
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAAA
* * * * *
49357 TTTACTTTTTAAA--T-TT-CTTCTTAATTTTCAAAATATTAATAAATTAATATTGTTTTATTCC
66 TTTA-TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC
* * * * * * **
49418 GAACAAACTTATATGTACA-AAACATTTGTTTTATTG-CAAAATAAAAGAAC
130 GAATAAACTTGTATGAATAGAAACAATTGTTTTA-TGACAAAACAAAAGGTC
* * * *
49468 ATAACGATTTGAAATAGATAATTGCTCAAATAATCATAATTATTTGAACTGGTT-AGGTAAACTG
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCA-GTAAAC--
* * * *
49532 AATTATTT-TTTTTAAATCTCTTACTTATTAAGTTTTAAAATATTAATAAATTTGTTTTACTTTA
63 AA--ATTTATTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTA
* * * * * **
49596 TTCCGAAT-AAGTTACTAAGAA-ATGAAAAAATTGTTTTACAACAAAACAAAAGGTC
126 TTTCGAATAAACTT-GTATGAATA-GAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * * *
49651 ATAACGATTTGAAATAAAGAATTGTTCATATAGCCTTAAATATTTGAACTAGTTCAGTAAACAAA
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAAA
* * * *
49716 TTTATTGTTTAAATCTCTTAGTTATTAATTTTTAGAATATTATTATATTAGTATTATTTTATTTC
66 TTTATT-TTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC
* * * * *
49781 GAATAAACTTGTGTGAATAGAAATAATTGTTTTATGAGATAACAAAAGGTT
130 GAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * * * *
49832 ATAACAATTTGAAATATATAATTGTTTAAATAGTCA-AACTATTTAAATTTGTTCAGTAAACAGA
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAAA
* * * * * *
49896 TTAACTTTTAAA--TCTT--TTATTAATTTTTGAAATATTAGTAAATTAGTATTATTTTATTCCA
66 TTTATTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCG
*** * *
49957 AATAGGTTTGTATG-ATGAAAAACAATTGTTTTATGACAAAACAAAAGTTC
131 AATAAACTTGTATGAAT-AGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * * * * * **
50007 ATAATGATTTTAAATAGATAATTATTCAAATGGCCATAATTATTTGAA-TAATT-TGATAAACTG
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAG-TAAACAA
* ** * * ** *
50070 ATTTATTTTTTAAAACTCCAACTTCTTAA-TTTTGAAATATTAATAAAGCAATATTATTTTATTT
65 ATTTA-TTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTA-TT
* * * * * *
50134 TGGAA-AAACTTTTATGTACT-GAAACAATTATTTTATGATAAAATAAAAGGTC
128 TCGAATAAACTTGTATG-AATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * *
50186 ATAACGATTTTAAATAGATAATTGTTTAAATAGTCATAACTATTTGAACTTA-TTCGGTAAATAA
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TAGTTCAGTAAACAA
* * * *
50250 A-TT-TTTTTAAA-AT-TT-CTTATTAATTTTCT-AAATTTTAATAAATTAGTATTACTATATTT
65 ATTTATTTTTAAATCTCTTACTTATTAATTTT-TAAAATATTAATAAATTAGTATTATTTTATTT
* * * * * * * * * *
50309 CGAATAAGCATATATCAACT-GAAATAATTATTTTTTGACTAAACAAAAGATT
129 CGAATAAACTTGTATGAA-TAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* ** * * * * ** * *
50361 AGAATAATTTGGAATAGATAATTATTCTAATAGTCTTAACTATTTGAACT-GCTTTGGAAAACAC
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTCAGTAAACAA
* * * * *
50425 ATTTA-TTTTAAA-ATC---CTTATTAATTTTCAAAATAGTAATAAATTGGTATTATTTTATTTT
65 ATTTATTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTC
** * * * *
50485 GAATAATTTTGTATGAATAGAAACAATTATTTTATAATAAAACAAAATGTC
130 GAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * ** * * * * * * *
50536 ATAACGACTTGAAATAAATAACAGTTCAAATGGACATGACTATTTAAACTTGTTCGGTAAACAGA
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAAA
* * *
50601 TTTATTTTTTAAATCT-TTAACTTATTAATTTTTAGAATAATAATAAATTAGTATTATTTTATTC
66 TTTA-TTTTTAAATCTCTT-ACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTT
* * * **
50665 CAAATAAAACTTTTGTGAATAG-AACAATTGTTTTATGACAAAACAAAATATC
129 CGAAT-AAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * *
50717 ATAGA-GATTTGAAATATATAATTGTTCAAACAGTAATAACTATTTGAACTTGCTCAGTAAACAA
1 ATA-ACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAA
* * *
50781 ATTTATTATTTAAATCTTTTACTTATTAA-TTTTAGAAATATTAATAAATTAATATTATTTTGTT
65 ATTTATT-TTTAAATCTCTTACTTATTAATTTTTA-AAATATTAATAAATTAGTATTATTTTATT
* * * **
50845 TCGAATAAGCTTGTATGAATAGAAATAATTGGTTTATGACAAAACAAATTGTC
128 TCGAATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
* * * * ** *
50898 ATAACAATTTGAAATAGATAATTGTTCAAATAATCAAAACTA-TTGAA-TGTGTTCAAAAAACAT
1 ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-AGTTCAGTAAACAA
* * ** * *
50961 ATTTATTTTTAAAAT-TTTTATTTATTAATTTTTGGAGTTTTAATAAATTTA-TATTATTTTA-T
65 ATTTATTTTT-AAATCTCTTACTTATTAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATT
* * * * * *
51023 TCTAAATAAGCTTGCATGAACA-AAACTAATTATTTTATGACAAAACAAATGGTC
128 TC-GAATAAACTTGTATGAATAGAAAC-AATTGTTTTATGACAAAACAAAAGGTC
** * *
51077 AT-ATTATTTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACT
1 ATAACGA-TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
51127 TGTTTGGTAA
Statistics
Matches: 1729, Mismatches: 371, Indels: 182
0.76 0.16 0.08
Matches are distributed among these distances:
174 19 0.01
175 368 0.21
176 142 0.08
177 147 0.09
178 24 0.01
179 288 0.17
180 227 0.13
181 375 0.22
182 64 0.04
183 74 0.04
184 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
ATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAGTAAACAAA
TTTATTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCG
AATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTC
Found at i:51115 original size:18 final size:19
Alignment explanation
Indices: 51069--51124 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 19
51059 ATGACAAAAC
*
51069 AAATGGTCAT-ATTATTTTG
1 AAATAGTCATAATTA-TTTG
51088 AAATAG--ATAATTATTT-
1 AAATAGTCATAATTATTTG
*
51104 AAATAGTCATAACTATTTG
1 AAATAGTCATAATTATTTG
51123 AA
1 AA
51125 CTTGTTTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
16 6 0.19
17 5 0.16
18 13 0.42
19 7 0.23
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (19 bp):
AAATAGTCATAATTATTTG
Found at i:51251 original size:60 final size:59
Alignment explanation
Indices: 51134--51335 Score: 257
Period size: 59 Copynumber: 3.4 Consensus size: 59
51124 ACTTGTTTGG
**
51134 TAAATTTTCCTTAAAAATAAATTTTTCAAAAAAAAATATTTTTGAGGG-AAAGTTGAAAGTA
1 TAAATTTTCCTT-AAAATAAA-AATTCAAAAAAAAATATTTTTG-GGGAAAAGTTGAAAGTA
* *
51195 TAAATTTTCCTTAAAAATAAAAATTCAAAAAAATATATTTTCGGGGAAAAGTTGAAAGTA
1 TAAATTTTCCTT-AAAATAAAAATTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTA
* *
51255 TCAATTTTCCTT-AAA-AAAAATTCCAAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTA
1 TAAATTTTCCTTAAAATAAAAATT-C-AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTA
* *
51314 TCAATTTTTCTTAAAATAAAAA
1 TAAATTTTCCTTAAAATAAAAA
51336 CTTCCATGTT
Statistics
Matches: 127, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
57 7 0.06
58 4 0.03
59 45 0.35
60 45 0.35
61 26 0.20
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.34
Consensus pattern (59 bp):
TAAATTTTCCTTAAAATAAAAATTCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTA
Found at i:52053 original size:28 final size:28
Alignment explanation
Indices: 52020--52080 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
52010 ATAGATAATT
*
52020 GTTCATATAGTCTTAATTATTTAAACTG
1 GTTCATATAGTCTTAATTATTTAAACTA
52048 GTTCATATAGTCTTAATTATTTAAACTA
1 GTTCATATAGTCTTAATTATTTAAACTA
52076 GTTCA
1 GTTCA
52081 GCAAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.46
Consensus pattern (28 bp):
GTTCATATAGTCTTAATTATTTAAACTA
Found at i:52430 original size:16 final size:17
Alignment explanation
Indices: 52409--52441 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
52399 TATTGATTTC
52409 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
52425 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
52442 TGAAGTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:52713 original size:181 final size:180
Alignment explanation
Indices: 52240--52800 Score: 650
Period size: 181 Copynumber: 3.1 Consensus size: 180
52230 AACTATACAT
* * ** * * * **
52240 TTGTTCAAATAGTCATAACTTTTTAAATGGGTTCGATAAATAAATTTATTTTTTAAATTTCTTAC
1 TTGTTCAAATAGTCATAACTATTTGAATTAGTTCAATAAACAAATTAATTTTTTAAATCACTT-C
* ** * * ***
52305 TTATTAACTTTTGAAAGGTTAATAAATTAGTGTTATTTTATTCT-G--AAGCTTGTATGATAAAA
65 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGA-ACTG
* * * * * * *
52367 AAAAAATTATTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAA
129 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
* * * * * * * * *
52419 TTATTGAAATAGCCATAATTATTTGAAGTAATTCAGTAAACAAAATCATTTTTTAAATCA---CT
1 TTGTTCAAATAGTCATAACTATTTGAATTAGTTCAATAAACAAATTAATTTTTTAAATCACTTCT
* * *
52481 TATTAATTTTTGAAATATTAATAAATTATTATTATTTTATTTCGAATAAGCTTGTATGAACTGAA
66 TATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGAA
*
52546 ACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTTAAATAGATAA
131 ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
*
52596 TTGTTCAAATAGTCATAACTATTTGAATTTGTTCAATAAACAAATTAATTTTTTTAAA-CACTTG
1 TTGTTCAAATAGTCATAACTATTTGAATTAGTTCAATAAACAAATTAA-TTTTTTAAATCACTT-
*
52660 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAACTG
64 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTG
* * * *
52725 AAACAATTGTTTTTTGTCAAAACAAAAGGTCATAACGATTTTAAATAAATAA
129 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
52777 TTGTTCAAATAGTCATAACTATTT
1 TTGTTCAAATAGTCATAACTATTT
52801 AAACTTGATT
Statistics
Matches: 319, Mismatches: 55, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
175 38 0.12
177 85 0.27
178 21 0.07
179 43 0.13
181 132 0.41
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
TTGTTCAAATAGTCATAACTATTTGAATTAGTTCAATAAACAAATTAATTTTTTAAATCACTTCT
TATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGGATAAGCTTGTATGAACTGAA
ACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
Found at i:52862 original size:15 final size:15
Alignment explanation
Indices: 52844--52873 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
52834 ATCTTTTGTT
*
52844 TGTTAATATTTTTAA
1 TGTTAATAATTTTAA
52859 TGTTAATAATTTTAA
1 TGTTAATAATTTTAA
52874 ATTTTAAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (15 bp):
TGTTAATAATTTTAA
Found at i:52907 original size:14 final size:14
Alignment explanation
Indices: 52866--52908 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
52856 TAATGTTAAT
*
52866 AATTTTAAATTTTA
1 AATTTAAAATTTTA
*
52880 AATTTTAAATTTTA
1 AATTTAAAATTTTA
52894 AA-TTAAAATATTTA
1 AATTTAAAAT-TTTA
52908 A
1 A
52909 TTTTTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 6 0.22
14 21 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AATTTAAAATTTTA
Found at i:52913 original size:21 final size:21
Alignment explanation
Indices: 52866--52914 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
52856 TAATGTTAAT
*
52866 AATTTTAAATTTTAAATTTTA
1 AATTTTAAATTTAAAATTTTA
52887 AATTTTAAA-TTAAAATATTTA
1 AATTTTAAATTTAAAAT-TTTA
*
52908 ATTTTTA
1 AATTTTA
52915 TTTTTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.24
21 19 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTTTAAATTTAAAATTTTA
Found at i:52914 original size:7 final size:7
Alignment explanation
Indices: 52866--52897 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
52856 TAATGTTAAT
52866 AATTTTA
1 AATTTTA
52873 AATTTTA
1 AATTTTA
52880 AATTTTA
1 AATTTTA
52887 AATTTTA
1 AATTTTA
52894 AATT
1 AATT
52898 AAAATATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
AATTTTA
Found at i:53585 original size:182 final size:176
Alignment explanation
Indices: 53168--53778 Score: 569
Period size: 180 Copynumber: 3.4 Consensus size: 176
53158 TAAGAAATTT
* * * *
53168 AAATAGCTATGACTATTTGAACAATTGTCTATTTAAAATTGTTATG-ACTTTTTGTTTTGTCATA
1 AAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAAC-TTTTGTTTTATCATA
**
53232 AAACAATTGTTT-TAGTTCATACAAGCTTATTCAAAATAAAATAAA-ACTAATTTATTAATATTT
65 AAACAATTGTTTCTA-TTCAT-CAAAATTATTCAAAATAAAA-AAATACT-ATTTATTAATATTT
* * * * * *
53295 CAAAAATACTAACTAAGTGATTTAAAAAGTTAATTTGTTTATCGAATCAGTTC
126 C-AAAATAATAA-TAAGAGATTTAAAAAATAAATCTGTTTATCGAACCAGTTC
* * * * * * *
53348 AAATAGTCAT-ATCCATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTTTCATA
1 AAATAGTTATGAT-TATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATA
* * * *
53412 AAACAATTCTTTCTATTCATGCAAAATTATTCAAAATAAAAAAATATTGATTTATTAACATTCTG
65 AAACAATTGTTTCTATTCAT-CAAAATTATTCAAAATAAAAAAATACT-ATTTATTAATATT-TC
*
53477 AAAATTAATAAGTAAGAGATTTGAAAAAATAAATCTGTTTA-CTAACCAAGTTC
127 AAAA-TAATAA-TAAGAGATTT-AAAAAATAAATCTGTTTATCGAACC-AGTTC
53530 AAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAA
1 AAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAA
* * * *
53595 AACAATTGTTTC-AGT-ATAAAAACTTATGCAAAATAAAATAATACTACTTTATTAATATTTCAA
66 AACAATTGTTTCTATTCATCAAAA-TTATTCAAAATAAAAAAATACTA-TTTATTAATATTTCAA
* * * * * ** *
53658 AA-ATTAATAAGAGATTTAAAAAATAAATCAGCTTACCAAATTAGATC
129 AATAATAATAAGAGATTTAAAAAATAAATCTGTTTATCGAACCAGTTC
*** * * ** * * *
53705 AAATAAG-TATG--GCCTTGAATAATTATCTATTTCAAATCATTATTACCTTTTGTTTTGTCATA
1 AAAT-AGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATA
53767 AAACAATTGTTT
65 AAACAATTGTTT
53779 TCCAACATAC
Statistics
Matches: 360, Mismatches: 58, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
173 53 0.15
175 28 0.08
176 15 0.04
177 4 0.01
179 14 0.04
180 134 0.37
181 24 0.07
182 86 0.24
183 2 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (176 bp):
AAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAA
AACAATTGTTTCTATTCATCAAAATTATTCAAAATAAAAAAATACTATTTATTAATATTTCAAAA
TAATAATAAGAGATTTAAAAAATAAATCTGTTTATCGAACCAGTTC
Found at i:55784 original size:180 final size:180
Alignment explanation
Indices: 55548--57048 Score: 1016
Period size: 181 Copynumber: 8.3 Consensus size: 180
55538 TAGATAATTA
* * *
55548 TTCAAATAGTCTA--ACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTA
1 TTCAAATAGT-TATGACTATTTAAACAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGTC
*
55611 ATAAAACAATTGTTTCAGCTAAT-ATAAA-TTATTAAAAATAAAATAATACTAATTTATTAATAT
64 ATAAAACAATTGTTT-AGCTAATCATAAAGTTATTCAAAATAAAATAATACTAATTTATTAATAT
* * * * *
55674 TTAAAAAATGAATGAGTAAGAGAATTAAAAAAATGAATTTGTTTACTAAAAAAG
128 TTAAAAAATTAATAAGTAAGAG-ATTTAAAAAATAAATTTGTTTACTAAACAAG
* * * * *
55728 TTCAAATAGTTATGACTATCTAAACAATTATCTATTTCAACTCATTGTGACTTTTGTTTTGTGAG
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTGTTTTGTCAT
* * * * **
55793 AAAGCAATTG--GATCTATTCATGAAAGGTTATTTTAAATAAAATAATA-TAAATTTATTAATAT
66 AAAACAATTGTTTAGCTAATCAT-AAA-GTTATTCAAAATAAAATAATACT-AATTTATTAATAT
* * * * * * *
55855 TCAAAAAATTAATAAATAATA-ATTTAAACAATAAATTTATTTTCTGAACACA-
128 TTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACA-AG
* ** *
55907 TTTAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGACTATTTGTTTTGTGA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACT-TTTGTTTTGTCA
* * *
55972 TAAATCAATTGTTTATG-T--TCATACAAGCTTATTCAAAATAAAATAATATTAATTTATTAAAA
65 TAAAACAATTGTTTA-GCTAATCATA-AAG-TTATTCAAAATAAAATAATACTAATTTATTAATA
* * * * *
56034 TTTCAAAAATTAATAAGTAAAAGA-TT--AAAA-AAA-TTGATTTACCAAGCGAG
127 TTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTG-TTTACTAAACAAG
* * * * * * *
56084 TCCAAATAGTTATGACTATTTGAAAAAAAATATTTATTTCAAATCAGTATGATCTTTTCTTTGGT
1 TTCAAATAGTTATGACTATTT--AAACAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGT
* *
56149 CATAAAACAATTGTTTA--TATTCATAAAAGTTTATTCAAAATAAAATAATATTAATTTATTAAT
63 CATAAAACAATTGTTTAGCTAATCAT-AAAG-TTATTCAAAATAAAATAATACTAATTTATTAAT
** * *
56212 ATTCT-AAAAATTAATAAGTTGGAGATTTAAAAAATAAATCTATTTAGC-AAACAAG
126 ATT-TAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTA-CTAAACAAG
* * * * * * * *
56267 TTAAAATAATCATGTCCATTTGAACTATTATCTATTTCAAATCGTTATGACATTTTGTTTTGTTG
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGAC-TTTTGTTTTG-T-
* * * * *
56332 TAAAATAACACCAATGATTTAGAATAATTGGTATTCATACAAAATTATTCAAAATAAAATAATAC
63 CATAA-AACA--ATTG-TTTAG-CT-A-----A-TCAT--AAAGTTATTCAAAATAAAATAATAC
* * * ** *
56397 TAATTTATTACTATTTCAAAAA-T--TAA-TAA-AGATTT-AAAAATAAATATGTTTGTTGAATC
114 TAATTTATTAATATTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-AAAC
56456 AA-
178 AAG
* * * * * * * *
56458 TTCAAATAGTTAAGACTA-TTAGAATAATTATCTGTTTTAACTCATTCTAACTTTTTGTTTAGTC
1 TTCAAATAGTTATGACTATTTA-AACAATTATCTATTTCAAATCATTATGAC-TTTTGTTTTGTC
* * * * *
56522 ATAAAATAATTGTTTCAGCTCATACATGCCAA--T-TT-GAAATATAATAATACTAATTTATTAA
64 ATAAAACAATTGTTT-AGCTAAT-CAT--AAAGTTATTCAAAATAAAATAATACTAATTTATTAA
* * * **
56583 CATTTAAAAAATTAATAAGCAAGA-AATTAGAAAACATAAATCAGTTTACTAAACAAG
125 TATTTAAAAAATTAATAAGTAAGAGATTTA-AAAA-ATAAATTTGTTTACTAAACAAG
* * * * * * * *
56640 TTAAAATTGTTATGACTATTTGAATAATTATATATTTAAAATCATTATGACCTTTTATTTTATCA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGTCA
* * * *
56705 TAAAACAATTGTTTCAG-T--GCATAAAAGCTTATTCGAAATAAAATAATA-TGACTTATTAATA
65 TAAAACAATTGTTT-AGCTAATCAT-AAAG-TTATTCAAAATAAAATAATACTAATTTATTAATA
* * * * * * **
56766 TTTCAAAATTTGATAAATTAGAGATTTAAAAAATAAATTAGTTTA-TCAAATTAG
127 TTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACT-AAACAAG
* * * *
56820 TTCAAATAATTA-CAGTAATTTAAATAATTATCTATTTCAAATCATTATGAACTTTT-TTTTGTC
1 TTCAAATAGTTATGACT-ATTTAAACAATTATCTATTTCAAATCATTATG-ACTTTTGTTTTGTC
* ** * * *** * * *
56883 ATAAACCAATTGTTT-TTTTATCATACAAGCCTATTTGGATTAAAATAAAACTAATTTACTAATA
64 ATAAAACAATTGTTTAGCTAATCATA-AAG-TTATTCAAAATAAAATAATACTAATTTATTAATA
* * * * **
56947 TTTGAAAAATTAATAAGTAGGAGATTTAAAAGATAAATTTCTTTACCGAACAAG
127 TTTAAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACAAG
* * *
57001 TTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATTATTAT
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTAT
57049 AAAATGTTAT
Statistics
Matches: 1031, Mismatches: 208, Indels: 163
0.74 0.15 0.12
Matches are distributed among these distances:
175 32 0.03
176 6 0.01
177 37 0.04
178 13 0.01
179 216 0.21
180 201 0.19
181 241 0.23
182 100 0.10
183 33 0.03
184 6 0.01
185 4 0.00
186 8 0.01
187 4 0.00
188 3 0.00
189 3 0.00
190 4 0.00
191 57 0.06
192 11 0.01
193 1 0.00
194 3 0.00
196 2 0.00
197 43 0.04
198 3 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACTTTTGTTTTGTCAT
AAAACAATTGTTTAGCTAATCATAAAGTTATTCAAAATAAAATAATACTAATTTATTAATATTTA
AAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTACTAAACAAG
Found at i:55929 original size:18 final size:18
Alignment explanation
Indices: 55906--55962 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
55896 TTCTGAACAC
55906 ATTTAAATAGTTATGACT
1 ATTTAAATAGTTATGACT
* *
55924 ATTTAAACAATTAT--CT
1 ATTTAAATAGTTATGACT
*
55940 ATTTCAAATTGTTATGACT
1 ATTT-AAATAGTTATGACT
55959 ATTT
1 ATTT
55963 GTTTTGTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
16 6 0.19
17 7 0.23
18 12 0.39
19 6 0.19
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (18 bp):
ATTTAAATAGTTATGACT
Found at i:56535 original size:551 final size:555
Alignment explanation
Indices: 55827--56881 Score: 1202
Period size: 551 Copynumber: 1.9 Consensus size: 555
55817 AGGTTATTTT
*
55827 AAATAAAATAATATAAATTTATTAATATTCAAAAAATTAATAAATAATAATTTAAACAATAAATT
1 AAATAAAATAATATAAATTTATTAATATTCAAAAAATTAAT-AATAATAATTTAAACAATAAATA
* * ** *
55892 TATTTTCTGAACACATTTAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTGTTATGA
65 TATTTTCTGAACACATTCAAATAGTTAAGACTATTTAAACAATTATCTATTTCAAATCATTATAA
* * * ** *
55957 CTATTTGTTTTGTGATAAATCAATTGTTT-ATGTTCATACAAGCTTATTCAAAATAAAATAATAT
130 CTATTTGTTTAGTCATAAATCAATTGTTTCA-GCTCATACAAGCCAATTCAAAATAAAATAATAC
* * * * *
56021 TAATTTATTAAAATTTCAAAAATTAATAAGTAA-AAGATT-AAAA-A-AATTGA-TTTACCAAGC
194 TAATTTATTAAAATTTAAAAAATTAATAAGCAAGAA-ATTAAAAACATAAATCAGTTTACCAAAC
* * * * * *
56081 GAGTCCAAATAGTTATGACTATTTGAAAAAAAATATTTATTTCAAATCAGTATGATCTTTTCTTT
258 AAGTCAAAATAGTTATGACTATTTG--AAAAAATATATATTTAAAATCAGTATGACCTTTTATTT
* * * *
56146 GGTCATAAAACAATTGTTT-ATATTCATAAAAGTTTATTCAAAATAAAATAATATTAATTTATTA
321 GATCATAAAACAATTGTTTCA-ATGCATAAAAGCTTATTCAAAATAAAATAATA-TAACTTATTA
* *
56210 ATA-TTCTAAAAATTAATAAGTTGGAGATTTAAAAAATAAATCTA-TTTAGCAAACAAGTTAAAA
384 ATATTTC-AAAAATTAATAAATTAGAGATTTAAAAAATAAAT-TAGTTTAGCAAACAAGTTAAAA
* * *
56273 TAA-T-CATGTCCATTTGAACT-ATTATCTATTTCAAATCGTTATG-ACATTTTGTTTTGTTGTA
447 TAATTACA-GT-AATTT-AAATAATTATCTATTTCAAATCATTATGAAC-TTTT-TTTTGTTGTA
56334 AAATAACACCAATGATTTAGAATAATTGGTATTCATACAAAATTATTCA
507 AAATAACACCAATGATTTAGAATAATTGGTATTCATACAAAATTATTCA
* *
56383 AAATAAAATAATACT-AATTTATTACTATTTC-AAAAATTAAT-A-AA-GATTTAAA-AATAAAT
1 AAATAAAATAATA-TAAATTTATTAATA-TTCAAAAAATTAATAATAATAATTTAAACAATAAAT
* * * * *
56442 ATGTTTGT-TGAATCA-ATTCAAATAGTTAAGACTA-TTAGAATAATTATCTGTTTTAACTCATT
64 ATATTT-TCTGAA-CACATTCAAATAGTTAAGACTATTTA-AACAATTATCTATTTCAAATCATT
* * * ** *
56504 CTAACTTTTTGTTTAGTCATAAAAT-AATTGTTTCAGCTCATACATGCCAATTTGAAATATAATA
126 ATAACTATTTGTTTAGTCAT-AAATCAATTGTTTCAGCTCATACAAGCCAATTCAAAATAAAATA
* *
56568 ATACTAATTTATTAACATTTAAAAAATTAATAAGCAAGAAATTAGAAAACATAAATCAGTTTACT
190 ATACTAATTTATTAAAATTTAAAAAATTAATAAGCAAGAAATTA-AAAACATAAATCAGTTTACC
* * * * *
56633 AAACAAGTTAAAATTGTTATGACTATTTGAATAATTATATATTTAAAATCATTATGACCTTTTAT
254 AAACAAGTCAAAATAGTTATGACTATTTGAAAAAATATATATTTAAAATCAGTATGACCTTTTAT
* * * *
56698 TTTATCATAAAACAATTGTTTCAGTGCATAAAAGCTTATTCGAAATAAAATAATATGACTTATTA
319 TTGATCATAAAACAATTGTTTCAATGCATAAAAGCTTATTCAAAATAAAATAATATAACTTATTA
* * * ** *
56763 ATATTTCAAAATTTGATAAATTAGAGATTTAAAAAATAAATTAGTTTATCAAATTAGTTCAAATA
384 ATATTTCAAAAATTAATAAATTAGAGATTTAAAAAATAAATTAGTTTAGCAAACAAGTTAAAATA
56828 ATTACAGTAATTTAAATAATTATCTATTTCAAATCATTATGAACTTTTTTTTGT
449 ATTACAGTAATTTAAATAATTATCTATTTCAAATCATTATGAACTTTTTTTTGT
56882 CATAAACCAA
Statistics
Matches: 417, Mismatches: 62, Indels: 44
0.80 0.12 0.08
Matches are distributed among these distances:
550 3 0.01
551 131 0.31
552 28 0.07
553 95 0.23
554 86 0.21
555 7 0.02
556 63 0.15
557 4 0.01
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.40
Consensus pattern (555 bp):
AAATAAAATAATATAAATTTATTAATATTCAAAAAATTAATAATAATAATTTAAACAATAAATAT
ATTTTCTGAACACATTCAAATAGTTAAGACTATTTAAACAATTATCTATTTCAAATCATTATAAC
TATTTGTTTAGTCATAAATCAATTGTTTCAGCTCATACAAGCCAATTCAAAATAAAATAATACTA
ATTTATTAAAATTTAAAAAATTAATAAGCAAGAAATTAAAAACATAAATCAGTTTACCAAACAAG
TCAAAATAGTTATGACTATTTGAAAAAATATATATTTAAAATCAGTATGACCTTTTATTTGATCA
TAAAACAATTGTTTCAATGCATAAAAGCTTATTCAAAATAAAATAATATAACTTATTAATATTTC
AAAAATTAATAAATTAGAGATTTAAAAAATAAATTAGTTTAGCAAACAAGTTAAAATAATTACAG
TAATTTAAATAATTATCTATTTCAAATCATTATGAACTTTTTTTTGTTGTAAAATAACACCAATG
ATTTAGAATAATTGGTATTCATACAAAATTATTCA
Found at i:57195 original size:15 final size:16
Alignment explanation
Indices: 57174--57245 Score: 50
Period size: 15 Copynumber: 4.9 Consensus size: 16
57164 AATTATTTAT
57174 TATAAAAATATATTAA
1 TATAAAAATATATTAA
*
57190 -AT-AAAATA-ACTAA
1 TATAAAAATATATTAA
*
57203 TATAATAATATA--AA
1 TATAAAAATATATTAA
*
57217 -ATTAAAATA-ATTAA
1 TATAAAAATATATTAA
*
57231 TTTAAAAATAATATT
1 TATAAAAAT-ATATT
57246 GTTTATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 15
0.67 0.10 0.24
Matches are distributed among these distances:
12 1 0.02
13 11 0.26
14 12 0.29
15 13 0.31
16 2 0.05
17 3 0.07
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (16 bp):
TATAAAAATATATTAA
Found at i:57225 original size:21 final size:19
Alignment explanation
Indices: 57178--57225 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
57168 ATTTATTATA
*
57178 AAAATATATTAAATAAAAT
1 AAAATATAATAAATAAAAT
57197 AACTAATATAATAATATAAAATT
1 AA--AATATAATAA-ATAAAA-T
57220 AAAATA
1 AAAATA
57226 ATTAATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 2 0.08
21 13 0.54
22 6 0.25
23 3 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATATAATAAATAAAAT
Found at i:57470 original size:11 final size:11
Alignment explanation
Indices: 57454--57484 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
57444 TTAAATATTA
*
57454 TATAATCTTCT
1 TATAATATTCT
57465 TATAATATTCT
1 TATAATATTCT
57476 TATAATATT
1 TATAATATT
57485 AATAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (11 bp):
TATAATATTCT
Found at i:59231 original size:22 final size:22
Alignment explanation
Indices: 59206--59249 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
59196 ATTTTTTGTC
*
59206 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
59228 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
59250 TAAATAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:59981 original size:181 final size:180
Alignment explanation
Indices: 59642--59982 Score: 436
Period size: 180 Copynumber: 1.9 Consensus size: 180
59632 ATTAAATTAT
* *
59642 AATAACAATAATTCTAATTAATTAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
1 AATAACAATAATACTAATTAATTAATATTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
* *** * * * *
59707 TGTTTACCGAGTGAGTTCAAATAGTTATGATGTTTAAACAATTATTTATTTCAAATCGTTATGAT
66 AGTTTACCGAACCAGTTCAAATAGTCATGATATTTAAACAATTATCTATTTCAAATCATTATGAT
* *
59772 CTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAGTTTAATTGG
131 ATTTTATTTTGTTATAAAACAATTGTTTCTATTCATACAAGTTTAATTGG
** *
59822 AATAA-AATAATACTAA-TATATTAATATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAA
1 AATAACAATAATACTAATTA-ATTAATATTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAA
** * * *
59885 TTAGTTTATTGAACCAGTTCAAATAGTCATG-TCCATTTGAACTATTATCTATTTCAAATTATTA
64 TTAGTTTACCGAACCAGTTCAAATAGTCATGAT--ATTTAAACAATTATCTATTTCAAATCATTA
*
59949 TGATATTTTATTTTGTTGTAAAACAATTGTTTCT
127 TGATATTTTATTTTGTTATAAAACAATTGTTTCT
59983 TATCGATCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
178 2 0.01
179 21 0.15
180 58 0.43
181 55 0.40
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
AATAACAATAATACTAATTAATTAATATTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATT
AGTTTACCGAACCAGTTCAAATAGTCATGATATTTAAACAATTATCTATTTCAAATCATTATGAT
ATTTTATTTTGTTATAAAACAATTGTTTCTATTCATACAAGTTTAATTGG
Found at i:60718 original size:22 final size:23
Alignment explanation
Indices: 60678--60732 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
60668 TAATTGTTAT
*
60678 AAATA-AATA-ATAATCTAATTT
1 AAATATAATATATAATCTAATTA
*
60699 AATTATAATATATAAT-TAATTA
1 AAATATAATATATAATCTAATTA
60721 AAATATAATATA
1 AAATATAATATA
60733 AATATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.14
22 20 0.69
23 5 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (23 bp):
AAATATAATATATAATCTAATTA
Found at i:60881 original size:13 final size:13
Alignment explanation
Indices: 60863--60887 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60853 AATACAAATG
60863 AATCTAATTATTT
1 AATCTAATTATTT
60876 AATCTAATTATT
1 AATCTAATTATT
60888 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:61436 original size:14 final size:14
Alignment explanation
Indices: 61417--61446 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61407 TTAAGAGATT
61417 ATAAATTTAGTATA
1 ATAAATTTAGTATA
*
61431 ATAAATTTATTATA
1 ATAAATTTAGTATA
61445 AT
1 AT
61447 TTAAAGTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATAAATTTAGTATA
Found at i:61799 original size:19 final size:20
Alignment explanation
Indices: 61777--61849 Score: 73
Period size: 19 Copynumber: 3.8 Consensus size: 20
61767 ATTTTATTGG
61777 TTAA-AATATATTATATAAT
1 TTAATAATATATTATATAAT
*
61796 TTAATAATATAAT-TATAAT
1 TTAATAATATATTATATAAT
61815 TATAACTAATA-ATTATATAA-
1 T-TAA-TAATATATTATATAAT
* *
61835 ATAATAAAATATTAT
1 TTAATAATATATTAT
61850 TTGTTTTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.09
19 19 0.42
20 12 0.27
21 10 0.22
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATAATATATTATATAAT
Found at i:61824 original size:21 final size:20
Alignment explanation
Indices: 61777--61834 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
61767 ATTTTATTGG
*
61777 TTAA-AATATATTATATAAT
1 TTAATAATATAATATATAAT
61796 TTAATAATATAAT-TATAAT
1 TTAATAATATAATATATAAT
*
61815 TATAACTAATA-ATTATATAA
1 T-TAA-TAATATAATATATAA
61835 ATAATAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 11 0.33
20 12 0.36
21 10 0.30
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATAATATAATATATAAT
Found at i:62176 original size:22 final size:21
Alignment explanation
Indices: 62136--62190 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
62126 TTTTATCATT
62136 AATTAATAGTTAATGATTATA
1 AATTAATAGTTAATGATTATA
* *
62157 AATTAATATTATAATTATTATA
1 AATTAATAGT-TAATGATTATA
*
62179 TATTAAATAGTT
1 AATT-AATAGTT
62191 TTGTTATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 9 0.32
22 14 0.50
23 5 0.18
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (21 bp):
AATTAATAGTTAATGATTATA
Found at i:62312 original size:24 final size:26
Alignment explanation
Indices: 62273--62333 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
62263 AATTTATATT
62273 TAATTAAAGTTTAATTATT-T-AATAA
1 TAATT-AAGTTTAATTATTATCAATAA
*
62298 TAATTTAGTTTAATTATTATCAATAA
1 TAATTAAGTTTAATTATTATCAATAA
*
62324 TTATTAAGTT
1 TAATTAAGTT
62334 ATAAAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.39
25 6 0.19
26 13 0.42
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (26 bp):
TAATTAAGTTTAATTATTATCAATAA
Found at i:63179 original size:13 final size:13
Alignment explanation
Indices: 63161--63190 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63151 TTACTATTAA
*
63161 TAATAATATTATT
1 TAATAATAATATT
63174 TAATAATAATATT
1 TAATAATAATATT
63187 TAAT
1 TAAT
63191 TTTATTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAATAATATT
Found at i:64352 original size:180 final size:180
Alignment explanation
Indices: 64014--64674 Score: 456
Period size: 180 Copynumber: 3.7 Consensus size: 180
64004 ATCGAATCGG
* * *
64014 TTCAAATAATTATAACTATTTGAATAATTATTTATTTCAAATCATTATTACTTTTTGTTTTGTCA
1 TTCAAATAATTATAACTATTTGAATAATTATCTATTTCAAATCATTATAACTTTTTATTTTGTCA
* * * *
64079 TAAAACAATTGTTTTTATTAATATAAGTTTGTTCAAAATAAAATAATACTAATTTATTAATATTT
66 TAAAACAATTGGTTCTATTAATATAAGTTTATTCAAAATAAAATAATACTAATTTAATAATATTT
* ** * * *
64144 AGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGTTTACCAAACCA
131 AGAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAACCA
* * * * ** *
64194 TTCAAATAGTTTTGACTATTTGAATACTTATCTATTTCAAATTGTTATAACTTTTTATTTTGTCG
1 TTCAAATAATTATAACTATTTGAATAATTATCTATTTCAAATCATTATAACTTTTTATTTTGTCA
* * * * * * * *
64259 TTAAACAATTGGTTCTGTTCATGCT-ATTTTATTTAGAATAAAATAATATTAATTTAATAATATT
66 TAAAACAATTGGTTCTATTAAT-ATAAGTTTATTCAAAATAAAATAATACTAATTTAATAATATT
* * ** **** *
64323 TCA-AAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATTGTTGAATCA
130 T-AGAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAACCA
* * * * * * * * * * *
64374 GTTAAAATAGTTACAACGATATGAATGATTATCTATTTTAAATCATTATAACCTTTTCTTTTATT
1 -TTCAAATAATTATAACTATTTGAATAATTATCTATTTCAAATCATTATAACTTTTTATTTTGTC
* * * * * * ** *
64439 GTAAAACAATT-GTTTTGTTCATACAAGCTTATTCTGATTAAAATAATACTAATTTAATAATATT
65 ATAAAACAATTGGTTCTATTAATATAAGTTTATTCAAAATAAAATAATACTAATTTAATAATA-T
** * **
64503 TTA-AAAATTAATAAGTAA-AAAATTTTAAAAATAAATTTGTTTA-CAAAGTA
129 TTAGAAAATTAATAACCAAGAAAA-TTAAAAAATAAATTTGTTTACCAAACCA
** ** * ** * * * * * *
64553 GTTCAAATGGTTA-AGACTATTAAAACAATTGCCTATTTAAAATCGTTCTAACATTTTGTTTAGT
1 -TTCAAATAATTATA-ACTATTTGAATAATTATCTATTTCAAATCATTATAACTTTTTATTTTGT
* * * * * * *
64617 TATAAAACAATT-GTTCTAGTTCATACAAGCTTATTCAGAATAAATTAATAATAATTTA
64 CATAAAACAATTGGTTCTA-TTAATATAAGTTTATTCAAAATAAAATAATACTAATTTA
64675 TTAGCATTCA
Statistics
Matches: 375, Mismatches: 98, Indels: 16
0.77 0.20 0.03
Matches are distributed among these distances:
178 1 0.00
179 67 0.18
180 243 0.65
181 64 0.17
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (180 bp):
TTCAAATAATTATAACTATTTGAATAATTATCTATTTCAAATCATTATAACTTTTTATTTTGTCA
TAAAACAATTGGTTCTATTAATATAAGTTTATTCAAAATAAAATAATACTAATTTAATAATATTT
AGAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAACCA
Found at i:64659 original size:360 final size:361
Alignment explanation
Indices: 64007--64674 Score: 779
Period size: 360 Copynumber: 1.9 Consensus size: 361
63997 TATATTTATC
* * * * * * * * *
64007 GAATCGGTTCAAATAATTATAACTATTTGAATAATTATTTATTTCAAATCATTATTACTTTTTGT
1 GAATCAGTTAAAATAATTACAACGATATGAATAATTATCTATTTCAAATCATTATAACCTTTTCT
* * * * *
64072 TTTGTCATAAAACAATTGTTTTTATTAATATAAGTTTGTTCAAAATAAAATAATACTAATTTATT
66 TTTATCATAAAACAATTGTTTTTATTAATACAAGCTTATTCAAAATAAAATAATACTAATTTAAT
* * *
64137 AATATTTAGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGTTTACCAAACCATTCAAATA
131 AATATTTAGAAAATTAATAAGTAAAAAATTTAAAAAGTAAATTTGTTTACCAAACCATTCAAATA
** ** * * * * * * * * *
64202 GTTTTGACTATTTGAATACTTATCTATTTCAAATTGTTATAACTTTTTATTTTGTCGTTAAACAA
196 GTTAAGACTATTAAAACAATTACCTATTTAAAATCGTTATAACATTTTATTTAGTCATAAAACAA
* * ** * *
64267 TTGGTTCTGTTCATGCTATTTTATTTAGAATAAAATAATATTAATTTAATAATATTTCAAAACTT
261 TTGGTTCTGTTCATACAAGCTTATTCAGAATAAAATAATAATAATTTAATAATATTTCAAAACTT
64332 AATAACCAAGAAAATTAAAAAATAAATCTAATTGTT
326 AATAACCAAGAAAATTAAAAAATAAATCTAATTGTT
* * *
64368 GAATCAGTTAAAATAGTTACAACGATATGAATGATTATCTATTTTAAATCATTATAACCTTTTCT
1 GAATCAGTTAAAATAATTACAACGATATGAATAATTATCTATTTCAAATCATTATAACCTTTTCT
** * * ** *
64433 TTTATTGTAAAACAATTG-TTTTGTTCATACAAGCTTATTCTGATTAAAATAATACTAATTTAAT
66 TTTATCATAAAACAATTGTTTTTATTAATACAAGCTTATTCAAAATAAAATAATACTAATTTAAT
**
64497 AATATTTTA-AAAATTAATAAGTAAAAAATTTTAAAAA-TAAATTTGTTTA-CAAAGTAGTTCAA
131 AATA-TTTAGAAAATTAATAAGTAAAAAA-TTTAAAAAGTAAATTTGTTTACCAAACCA-TTCAA
* * * * *
64559 ATGGTTAAGACTATTAAAACAATTGCCTATTTAAAATCGTTCTAACATTTTGTTTAGTTATAAAA
193 ATAGTTAAGACTATTAAAACAATTACCTATTTAAAATCGTTATAACATTTTATTTAGTCATAAAA
*
64624 CAATT-GTTCTAGTTCATACAAGCTTATTCAGAATAAATTAATAATAATTTA
258 CAATTGGTTCT-GTTCATACAAGCTTATTCAGAATAAAATAATAATAATTTA
64675 TTAGCATTCA
Statistics
Matches: 249, Mismatches: 54, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
359 10 0.04
360 159 0.64
361 80 0.32
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (361 bp):
GAATCAGTTAAAATAATTACAACGATATGAATAATTATCTATTTCAAATCATTATAACCTTTTCT
TTTATCATAAAACAATTGTTTTTATTAATACAAGCTTATTCAAAATAAAATAATACTAATTTAAT
AATATTTAGAAAATTAATAAGTAAAAAATTTAAAAAGTAAATTTGTTTACCAAACCATTCAAATA
GTTAAGACTATTAAAACAATTACCTATTTAAAATCGTTATAACATTTTATTTAGTCATAAAACAA
TTGGTTCTGTTCATACAAGCTTATTCAGAATAAAATAATAATAATTTAATAATATTTCAAAACTT
AATAACCAAGAAAATTAAAAAATAAATCTAATTGTT
Found at i:64968 original size:142 final size:142
Alignment explanation
Indices: 64803--65094 Score: 338
Period size: 145 Copynumber: 2.0 Consensus size: 142
64793 CTTAGAGGGA
* *
64803 ATAAAATAATACTAATTTATTAATATTTCGTAAAA-TAATAAGTAAGA-A-ATTTAAAAATAAAT
1 ATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATATTAAAAAATAAAT
* * ** * * * *
64865 TTGTTTACCGAATCAATTAAAATAATTATGGCCATGTGAATGATTATCTGTTTCAAATCGTTATG
65 ATGTTTACCGAA-CAATTAAAATAATTATGACCATGTGAACAATTATCAGTCTCAAATCATTAAG
64930 ACCTTTTGTTTTGTC
129 ACC-TTTGTTTTGTC
* *
64945 ATAAAATATTACTAATTTTTTAATATTTCAAAAATTAATAAGTAAGAGATTTATTAAAAAATAAA
1 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA--TATTAAAAAATAAA
* ** * * * *
65010 TATGTTTATCGAACCGTTCAAATAGTTATGACTATTTGAACAATTATCAGTCTCAAATCATTAAG
64 TATGTTTACCGAACAATTAAAATAATTATGACCATGTGAACAATTATCAGTCTCAAATCATTAAG
*
65075 ATCTTTGTTTTGTC
129 ACCTTTGTTTTGTC
65089 ATAAAA
1 ATAAAA
65095 CAATTATTTC
Statistics
Matches: 125, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
141 4 0.03
142 39 0.31
143 1 0.01
144 17 0.14
145 41 0.33
146 23 0.18
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (142 bp):
ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATATTAAAAAATAAATA
TGTTTACCGAACAATTAAAATAATTATGACCATGTGAACAATTATCAGTCTCAAATCATTAAGAC
CTTTGTTTTGTC
Found at i:65458 original size:14 final size:13
Alignment explanation
Indices: 65412--65521 Score: 51
Period size: 12 Copynumber: 8.9 Consensus size: 13
65402 ACTAAATAGT
65412 TAATAATT-TTAA
1 TAATAATTATTAA
*
65424 TTAT-ATTATTAA
1 TAATAATTATTAA
*
65436 TATAGAATTAATTAA
1 TA-ATAATT-ATTAA
* *
65451 TAATAATTAATAT
1 TAATAATTATTAA
* *
65464 TGAT-ATTAATAA
1 TAATAATTATTAA
65476 TAAATAA-TATTAA
1 T-AATAATTATTAA
65489 T-AT--TTAGTT-A
1 TAATAATTA-TTAA
65499 TAATAA-TATTAA
1 TAATAATTATTAA
*
65511 T-ATTATTATTA
1 TAATAATTATTA
65522 GGTATTAGGA
Statistics
Matches: 74, Mismatches: 11, Indels: 26
0.67 0.10 0.23
Matches are distributed among these distances:
10 4 0.05
11 14 0.19
12 25 0.34
13 15 0.20
14 9 0.12
15 7 0.09
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (13 bp):
TAATAATTATTAA
Found at i:65459 original size:25 final size:26
Alignment explanation
Indices: 65431--65483 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
65421 TAATTATATT
65431 ATTAATATAGA-ATTAATTAAT-AATA
1 ATTAATATAGATATTAA-TAATAAATA
*
65456 ATTAATATTGATATTAATAATAAATA
1 ATTAATATAGATATTAATAATAAATA
65482 AT
1 AT
65484 ATTAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
ATTAATATAGATATTAATAATAAATA
Found at i:65474 original size:22 final size:21
Alignment explanation
Indices: 65446--65515 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
65436 TATAGAATTA
*
65446 ATTAATAATAATTAATATTGAT
1 ATTAATAATAA-TAATATTAAT
65468 ATTAATAATAAATAATATTAAT
1 ATTAATAAT-AATAATATTAAT
* *
65490 ATTTAGTTATAATAATATTAAT
1 A-TTAATAATAATAATATTAAT
65512 ATTA
1 ATTA
65516 TTATTAGGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.07
22 32 0.74
23 8 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
ATTAATAATAATAATATTAAT
Found at i:65489 original size:6 final size:6
Alignment explanation
Indices: 65430--65521 Score: 54
Period size: 6 Copynumber: 15.8 Consensus size: 6
65420 TTAATTATAT
* * *
65430 TATTAA TA-TAGA -ATTAA TTAATAA TAATTAA TATTGA TATTAA TAATAA
1 TATTAA TATTA-A TATTAA -TATTAA T-ATTAA TATTAA TATTAA TATTAA
* *
65479 -A-TAA TATTAA TATT-- TAGTT-A TAATAA TATTAA TATTAT TATTA
1 TATTAA TATTAA TATTAA TA-TTAA TATTAA TATTAA TATTAA TATTA
65522 GGTATTAGGA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
4 5 0.07
5 9 0.13
6 45 0.66
7 9 0.13
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (6 bp):
TATTAA
Found at i:65517 original size:9 final size:9
Alignment explanation
Indices: 65406--65518 Score: 53
Period size: 9 Copynumber: 12.8 Consensus size: 9
65396 TAGACAACTA
65406 AATAGTTAAT
1 AATA-TTAAT
*
65416 AATTTTAAT
1 AATATTAAT
* *
65425 TATATTATT
1 AATATTAAT
*
65434 AATATAGAAT
1 AATAT-TAAT
*
65444 TA-ATTAAT
1 AATATTAAT
65452 AATAATTAAT
1 AAT-ATTAAT
65462 ATTGATATTAAT
1 A---ATATTAAT
65474 AATA--AAT
1 AATATTAAT
65481 AATATTAAT
1 AATATTAAT
*
65490 -AT-TTAGT
1 AATATTAAT
65497 --TA-TAAT
1 AATATTAAT
65503 AATATTAAT
1 AATATTAAT
*
65512 ATTATTA
1 AATATTA
65519 TTAGGTATTA
Statistics
Matches: 78, Mismatches: 13, Indels: 25
0.67 0.11 0.22
Matches are distributed among these distances:
6 4 0.05
7 11 0.14
8 8 0.10
9 33 0.42
10 13 0.17
12 7 0.09
13 2 0.03
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.47
Consensus pattern (9 bp):
AATATTAAT
Found at i:65629 original size:22 final size:24
Alignment explanation
Indices: 65581--65635 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
65571 ATAATATTTT
*
65581 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
65605 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
65627 ATAACTATT
1 ATAAATATT
65636 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:66042 original size:128 final size:129
Alignment explanation
Indices: 65842--66074 Score: 290
Period size: 128 Copynumber: 1.8 Consensus size: 129
65832 TAATTTTTAA
** *
65842 AATATTAATAAATTAATATTATTTTATTTTGAACAAACTTATATGAACAAAAACATTTGTTTTAC
1 AATATTAATAAATTAATATTATTTTATTTCAAACAAACTTATATGAACAAAAACAATTGTTTTAC
*
65907 GATAAAACAAAAAG-TCATAACAATTTGAAATAGATAATTAAATCTATCAATTGTTAAATTTCAT
66 GACAAAACAAAAAGTTC-TAACAATTTGAAATAGATAATTAAATCTATCAATTGTTAAATTTCAT
* * * * * * * * *
65971 AATATTACTAGATT-ATATTATTTTATTTCAAATAAGCTTGTATGAAGATAAATAATTGTTTTAT
1 AATATTAATAAATTAATATTATTTTATTTCAAACAAACTTATATGAACAAAAACAATTGTTTTAC
* ***
66035 GACAAAACAAAAGGTTCTAATGTTTTGAAATAGATAATTA
66 GACAAAACAAAAAGTTCTAACAATTTGAAATAGATAATTA
66075 TTAAGATAGT
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
128 72 0.84
129 14 0.16
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (129 bp):
AATATTAATAAATTAATATTATTTTATTTCAAACAAACTTATATGAACAAAAACAATTGTTTTAC
GACAAAACAAAAAGTTCTAACAATTTGAAATAGATAATTAAATCTATCAATTGTTAAATTTCAT
Found at i:66476 original size:182 final size:182
Alignment explanation
Indices: 66101--66942 Score: 563
Period size: 178 Copynumber: 4.7 Consensus size: 182
66091 TGTTTTATGA
* * *
66101 AAATATATAATTGTTCAAATAGTCATAACTAATTGAACTAATTCGATAAACAGATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGATAAACAGATTTATGTTTTA
* * * * * *
66166 AATCTCTTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTCTGAATAGGCTTA
66 AATCTATAACTTATCAATTTTTTAAATATTAATAAAGTAATATTATTTTATTCTGAATAAGCTTA
*
66231 TATGATGAAAAACAATTGTTTTATGACAAAACAAAAAGTTCATAATGATTTG
131 TATGATGAAAAACAATTGTTTTATGACAAAACAAAAAGGTCATAATGATTTG
* * * * *
66283 AAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAACTA-ATTTTATGTTT
1 AAATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGATAAAC-AGA-TTTATGTTT
* *
66347 TAAATCTATAACTTATCAA-TTTTTATAATATTAATAAAGTAATGTTATTTTATT-TTAGATAAG
64 TAAATCTATAACTTATCAATTTTTTA-AATATTAATAAAGTAATATTATTTTATTCTGA-ATAAG
* * * * * *
66410 CTTTTATGAAT-TAAAACAATTGTTTTATGATAAAA-TATAAGGTCATAATGATTTT
127 CTTATATG-ATGAAAAACAATTGTTTTATGACAAAACAAAAAGGTCATAATGATTTG
** * * * ** *
66465 AAATAGATAATTGTTCAAATAGTAAAAAATATTTGAACTTGTTC-AGTAAATAGATTT-T-TTTT
1 AAATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGA-TAAACAGATTTATGTTTT
* * * * * *
66527 AATTTCT-TAA-TTAAT-AATTTTTTGAATGTTAATAAATTAGTATTATTTTA-TCTCAAATAAG
65 AA-ATCTATAACTT-ATCAATTTTTTAAATATTAATAAAGTAATATTATTTTATTCT-GAATAAG
* * * * * * * **
66588 CATGTATGTGTTG--AAGCAATTATTTTATGACTAAAC-AAAAGGTCAAAACGATAAG
127 C-T-TATATGATGAAAAACAATTGTTTTATGACAAAACAAAAAGGTCATAATGATTTG
* * * * * * * * *
66643 AAATAGATAATTGTTCTAATAGTCTTAACTATTTGAACTGATTCAACAAACACATTTATTTTTTA
1 AAATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGATAAACAGATTTATGTTTTA
* * ** ** **
66708 AATCCT-T-ACTTATTAA-TTTTTAGAATATTATTAATTTAGCAAAATTTTACTT-TGAATAAGC
66 AAT-CTATAACTTATCAATTTTTTA-AATATTAATAAAGTAATATTATTTTA-TTCTGAATAAGC
** ** * * * * *
66769 TTAT-TGAACATAAATTAAATGTTTTAGGACAAAACAAAAA--TTATAA-CAATTG
128 TTATATGATGA-AAAACAATTGTTTTATGACAAAACAAAAAGGTCATAATGATTTG
* * *** *
66821 AATATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGCTC-AGTAAAGAGATTTA-GTTT
1 AA-ATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGA-TAAACAGATTTATG-TT
* ** * * *
66884 TTAAATC--T--CTTATTAATTTTCAAAATAGTAATAAAATAGTATTATTTTATTCTGAATAA
63 TTAAATCTATAACTTATCAATTTTTTAAATATTAATAAAGTAATATTATTTTATTCTGAATAA
66943 TTTTGTATGA
Statistics
Matches: 523, Mismatches: 103, Indels: 74
0.75 0.15 0.11
Matches are distributed among these distances:
175 2 0.00
176 34 0.07
177 8 0.02
178 118 0.23
179 90 0.17
180 65 0.12
181 10 0.02
182 111 0.21
183 83 0.16
184 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.42
Consensus pattern (182 bp):
AAATAGATAATTGTTCAAATAGCCATAACTAATTGAACTAATTCGATAAACAGATTTATGTTTTA
AATCTATAACTTATCAATTTTTTAAATATTAATAAAGTAATATTATTTTATTCTGAATAAGCTTA
TATGATGAAAAACAATTGTTTTATGACAAAACAAAAAGGTCATAATGATTTG
Found at i:67635 original size:181 final size:179
Alignment explanation
Indices: 66985--67643 Score: 644
Period size: 181 Copynumber: 3.7 Consensus size: 179
66975 CATTAATTTT
* * * *
66985 TAAATAAATTTAATTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTAT
1 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTTATATTAT
* * *
67049 TTTATTTGAAATAAGCTTGA-ATGAATAGAACCAATCGTTTTATGACAAAAC-AAAAGATTC-TA
65 TTTATTTCAAATAAGCTT-ATATGAACA-AAACAATCGTTTTATGACAAAACAAAAAG-TTCATA
* *
67111 ATGTTTTGAAATAGATAATTATTAAGATAGTCATAACTATTTAAACTTGTTCGA
127 A-GATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTAAACTTGTTCGA
* * *
67165 TAAACAGATTTATTTTTTAAATTCTCTTA-TTTTTAATTTTTGGAATATTAATAAA-TTAGTATT
1 TAAATAGATTTATTTTTTAAA-TCTTTTACTTATTAATTTTT-GAATATTAATAAATTTA-TATT
* * ** * * *
67228 ATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACAAAATGTTACA-
63 ATTTTATTTCAAATAAGCTTATATGAA-CAAAACAATCGTTTTATGACAAAACAAAAAGTT-CAT
* * * * * * *
67292 ATGATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTTGG
126 AAGATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTAAACTTGTTCGA
* * * **
67346 T--A-A-ACTTATTTTTTTAAATATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTA
1 TAAATAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTTATATTA
* * * * * * *
67407 TTTTAATCCGAATAAGCTTGTATGGACGAAAACAATTGTTTTATGACAAAACAAAAAGGTCATAA
64 TTTTATTTCAAATAAGCTTATATGAAC-AAAACAATCGTTTTATGACAAAACAAAAAGTTCATAA
* * *
67472 GAATTTGAAATAAATAATTATTCAGATAGTCATAACGA-TTAAATTTGTTCGA
128 G-ATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTAAACTTGTTCGA
*
67524 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTAACTT-AATATTAATAAATTTATATTA
1 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATT--TTTGAATATTAATAAATTTATATTA
* * * *
67588 TTTTA-TTCAAAGTAAGCTTATATGAACAAATAAAATCATTATATGACAAACCAAAA
64 TTTTATTTCAAA-TAAGCTTATATGAACAAA-ACAATCGTTTTATGACAAAACAAAA
67644 GGTTATAGTG
Statistics
Matches: 390, Mismatches: 66, Indels: 45
0.78 0.13 0.09
Matches are distributed among these distances:
177 12 0.03
178 97 0.25
179 33 0.08
180 29 0.07
181 202 0.52
182 15 0.04
183 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
TAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTTATATTATT
TTATTTCAAATAAGCTTATATGAACAAAACAATCGTTTTATGACAAAACAAAAAGTTCATAAGAT
TTGAAATAGATAATTATTCAGATAGTCATAACTATTTAAACTTGTTCGA
Found at i:67678 original size:359 final size:357
Alignment explanation
Indices: 66998--67708 Score: 823
Period size: 359 Copynumber: 2.0 Consensus size: 357
66988 ATAAATTTAA
* * ** **
66998 TTTTAAAATTTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTTGAAATAA
1 TTTTAAAATTTTTACTTATTAATTGTTGAAACATTAATAAATCAATATTATTTTATCCGAAATAA
* * * * *
67063 GCTTGAATGAATAGAACCAATCGTTTTATGACAAAACAAAAGATTCTAATGTTTTGAAATAGATA
66 GCTTGAATGAAGAGAAACAATCGTTTTATGACAAAACAAAAGAGTCTAATGATTTGAAATAAATA
*
67128 ATTATTAAGATAGTCATAACTATTTAAACTTGTTCGATAAACAGATTTATTTTTTAAATTCTCTT
131 ATTATTAAGATAGTCATAACGATTTAAACTTGTTCGATAAACAGATTTATTTTTTAAATTCTCTT
* * **
67193 ATTTTTAATTTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATTG
196 ATTATTAATTCTT-GAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATCA
* ** * * * ** *
67258 AAACAATTGTTTTATTACAAAACAAAATGTTACAATGATTTGAAGTAGATAATTATTCAAATAGT
260 AAAAAATCATTATATGACAAAACAAAAGGTTACAATGATTCCAAGTAGATAATTATTCAAATAGC
* *
67323 CATGACTATTTGAACTTGTTTGGTAAACTTATT
325 CATAACTATTTAAACTTGTTTGGTAAACTTATT
* *
67356 TTTTTAAATATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCG-AAT
1 TTTTAAAAT-TTTTACTTATTAATTGTTGAAACATTAATAAATCAATATTATTTT-ATCCGAAAT
* * *
67420 AAGCTTGTATGGACGA-AAACAATTGTTTTATGACAAAACAAAA-AGGTCATAA-GAATTTGAAA
64 AAGCTTGAAT-GAAGAGAAACAATCGTTTTATGACAAAACAAAAGA-GTC-TAATG-ATTTGAAA
* * *
67482 TAAATAATTATTCAGATAGTCATAACGA-TTAAATTTGTTCGATAAATAGATTTATTTTTTAAA-
125 TAAATAATTATTAAGATAGTCATAACGATTTAAACTTGTTCGATAAACAGATTTATTTTTTAAAT
* *
67545 TCTTTTACTTATTAATTAACTT-AATATTAATAAATTTA-TATTATTTTA-TTCAAAGTAAGCTT
190 TCTCTTA-TTATTAATT--CTTGAATATTAATAAA-TTAGTATTATTTTATTTCAAA-TAAGCTA
* * * *
67607 ATATGAA-CAAATAAAATCATTATATGACAAACCAAAAGGTTATAGTGATTCCAAGTCA-ATAAT
250 ACATGAATCAAA-AAAATCATTATATGACAAAACAAAAGGTTACAATGATTCCAAGT-AGATAAT
* * *
67670 TGTTCAAATGGCCATAATTATTTAAACTTGTTTGGTAAA
313 TATTCAAATAGCCATAACTATTTAAACTTGTTTGGTAAA
67709 TAATACTAAT
Statistics
Matches: 296, Mismatches: 44, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
358 23 0.08
359 226 0.76
360 45 0.15
361 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (357 bp):
TTTTAAAATTTTTACTTATTAATTGTTGAAACATTAATAAATCAATATTATTTTATCCGAAATAA
GCTTGAATGAAGAGAAACAATCGTTTTATGACAAAACAAAAGAGTCTAATGATTTGAAATAAATA
ATTATTAAGATAGTCATAACGATTTAAACTTGTTCGATAAACAGATTTATTTTTTAAATTCTCTT
ATTATTAATTCTTGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATCAA
AAAAATCATTATATGACAAAACAAAAGGTTACAATGATTCCAAGTAGATAATTATTCAAATAGCC
ATAACTATTTAAACTTGTTTGGTAAACTTATT
Found at i:67903 original size:19 final size:19
Alignment explanation
Indices: 67871--67907 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67861 AGAATTAAAC
*
67871 AATATAATATTTTTATTAT
1 AATATAATAATTTTATTAT
*
67890 AATATTATAATTTTATTA
1 AATATAATAATTTTATTA
67908 CGATACTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATAATAATTTTATTAT
Found at i:68092 original size:16 final size:16
Alignment explanation
Indices: 68073--68147 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
68063 ATTTTAATTA
*
68073 ATTAATATATATTATT
1 ATTAATATATAATATT
*
68089 ATTAATTAAAATAATATT
1 ATTAA-T-ATATAATATT
68107 -TATAAT-TACTAATATT
1 AT-TAATATA-TAATATT
* *
68123 ATTAATATATATTATC
1 ATTAATATATAATATT
68139 ATT-ATATAT
1 ATTAATATAT
68148 TAGGATAGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
15 7 0.15
16 24 0.50
17 6 0.12
18 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTAATATATAATATT
Found at i:68112 original size:18 final size:19
Alignment explanation
Indices: 68059--68125 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
68049 ATAAATTTTT
68059 TAATATTT-TAATTAATTAA
1 TAATATTTATAATTAA-TAA
68078 TATATATTATTATTAATTAA-AA
1 TA-ATA-T-TTA-TAATTAATAA
*
68100 TAATATTTATAATTACTAA
1 TAATATTTATAATTAATAA
*
68119 TATTATT
1 TAATATT
68126 AATATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
18 6 0.15
19 13 0.32
20 4 0.10
21 4 0.10
22 6 0.15
24 7 0.17
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATTTATAATTAATAA
Found at i:68114 original size:25 final size:24
Alignment explanation
Indices: 68066--68134 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
68056 TTTTAATATT
* *
68066 TTAATTAATTAATATATATTATTA
1 TTAATTAAATAATATATATAATTA
*
68090 TTAATTAAAATAATATTTATAATTA
1 TTAATT-AAATAATATATATAATTA
* * *
68115 CTAATATTATTAATATATAT
1 TTAAT-TAAATAATATATAT
68135 TATCATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 6 0.17
25 29 0.81
26 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATTAAATAATATATATAATTA
Found at i:68136 original size:13 final size:13
Alignment explanation
Indices: 68073--68149 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 13
68063 ATTTTAATTA
68073 ATTAATATATATT
1 ATTAATATATATT
68086 ATT-AT-TA-ATT
1 ATTAATATATATT
* * *
68096 AAAATAATATTTATA
1 --ATTAATATATATT
*
68111 ATTACTA-ATATT
1 ATTAATATATATT
68123 ATTAATATATATT
1 ATTAATATATATT
* *
68136 ATCATTATATATT
1 ATTAATATATATT
68149 A
1 A
68150 GGATAGTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
10 3 0.06
11 2 0.04
12 13 0.27
13 27 0.56
14 1 0.02
15 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTAATATATATT
Found at i:68669 original size:20 final size:20
Alignment explanation
Indices: 68646--68683 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
68636 TAATACTAAT
* *
68646 TTTAATTTTATTAATATTCA
1 TTTAAATTTAATAATATTCA
68666 TTTAAATTTAATAATATT
1 TTTAAATTTAATAATATT
68684 TAAAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTAAATTTAATAATATTCA
Found at i:69173 original size:23 final size:22
Alignment explanation
Indices: 69147--69190 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
69137 ATGAATAAAT
69147 TATTAATATTATTAATAATATTA
1 TATTAATATTATTAAT-ATATTA
69170 TATTAATATTATTAATATATT
1 TATTAATATTATTAATATATT
69191 TAATAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTAATATTATTAATATATTA
Found at i:70263 original size:120 final size:120
Alignment explanation
Indices: 70071--70301 Score: 342
Period size: 120 Copynumber: 1.9 Consensus size: 120
70061 TGAATATATT
* **
70071 TTTACTGAACAAGTTCAAATAGTTATGGCTATTTGAACAATTATCTATTTCAAATTGCTATAACC
1 TTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACTATAACC
70136 TTATGTTTTGTCATAAAACAATT-TTTTCTATTCATACAAA-CTTATTTCAAATCTA
66 TTATGTTTTGTCATAAAACAATTATTTT-TATTCATA-AAAGCTTATTTCAAATCTA
* * * *
70191 TTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACC
1 TTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACTATAACC
*
70256 ATT-TGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATT
66 -TTATGTTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATT
70302 CAGATTAAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
119 3 0.03
120 91 0.91
121 6 0.06
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (120 bp):
TTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACTATAACC
TTATGTTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATTTCAAATCTA
Found at i:70628 original size:180 final size:181
Alignment explanation
Indices: 70179--70641 Score: 500
Period size: 180 Copynumber: 2.6 Consensus size: 181
70169 ATACAAACTT
* *
70179 ATTTCAAATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAA
1 ATTT-AAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * * ***
70244 ATCATTATGACCATTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTCAGATTA
65 ATCATTATGACCTTTTGTTTTGTCATAAAAAAATTGTATCAATTCATAAAAGCTTATTCAGATTA
* * * * * *
70309 AAATAATATTAATTTATTAATATTTCAATAATTAATAAGTAAAATATTTAAA
130 AAACAATACTAACTTATCAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
** ** * * * * * * * *
70361 AAATAAATAAATTTATCAAATAAATTCAAATAGTAATAACTGTTTAAATAATTATCTATTTCAAA
1 ATTTAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
** * * * * * *
70426 TTGTTTTGATCTTTTGTTTTGTCA-AAAAAAATTGTATCAATTTATATAGGCTTATT-TGATATA
66 TCATTATGACCTTTTGTTTTGTCATAAAAAAATTGTATCAATTCATAAAAGCTTATTCAGAT-TA
* *
70489 AAACAATACTAACTTATCAATA-TTCAAAAAATTAATGAGTAAGAGATTTAAA
130 AAACAATACTAACTTATCAATATTTC-AAAAATTAATAAGTAAAAGATTTAAA
* *
70541 ATTTAAATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
1 ATTTAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
* * *
70606 TCATTAAGACCTTTTATTTTGTCATAAAATAATTGT
66 TCATTATGACCTTTTGTTTTGTCATAAAAAAATTGT
70642 TTATGTTCAT
Statistics
Matches: 220, Mismatches: 58, Indels: 7
0.77 0.20 0.02
Matches are distributed among these distances:
179 6 0.03
180 134 0.61
181 78 0.35
182 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (181 bp):
ATTTAAATCTATTTACCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
TCATTATGACCTTTTGTTTTGTCATAAAAAAATTGTATCAATTCATAAAAGCTTATTCAGATTAA
AACAATACTAACTTATCAATATTTCAAAAATTAATAAGTAAAAGATTTAAA
Found at i:71392 original size:24 final size:24
Alignment explanation
Indices: 71377--71428 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
71367 TAATTTAGAT
*
71377 TTAATCTATATTTATACTTATAAA
1 TTAATCTATATTTATAATTATAAA
*
71401 TTAATCTATATTTATAGTTATAATA
1 TTAATCTATATTTATAATTATAA-A
71426 TTA
1 TTA
71429 CTTTATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (24 bp):
TTAATCTATATTTATAATTATAAA
Found at i:71457 original size:11 final size:11
Alignment explanation
Indices: 71451--71506 Score: 62
Period size: 11 Copynumber: 5.2 Consensus size: 11
71441 ACATATTTAG
71451 ATTATATATTA
1 ATTATATATTA
* *
71462 ATTATAAAGTA
1 ATTATATATTA
71473 ATTATTATATTA
1 ATTA-TATATTA
71485 ATTAT-TATTA
1 ATTATATATTA
*
71495 CTT-TATATTA
1 ATTATATATTA
71505 AT
1 AT
71507 ATAAACAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
9 1 0.03
10 13 0.35
11 14 0.38
12 9 0.24
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (11 bp):
ATTATATATTA
Found at i:71579 original size:18 final size:18
Alignment explanation
Indices: 71556--71599 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
71546 AGTATAAAAT
* *
71556 TTTAATTATAACTATTTA
1 TTTAATTATAAATAATTA
71574 TTTAATTATAAATAATTA
1 TTTAATTATAAATAATTA
71592 -TTAATTAT
1 TTTAATTAT
71600 TTAAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTAATTATAAATAATTA
Found at i:71692 original size:22 final size:23
Alignment explanation
Indices: 71657--71705 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
71647 TGTTATATTA
*
71657 AATTAATATTATTATTAATTTAAT
1 AATTAATA-TATTATTAAATTAAT
*
71681 AATTAATA-ATTATTAAATTATT
1 AATTAATATATTATTAAATTAAT
71703 AAT
1 AAT
71706 CGATAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 15 0.65
24 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
AATTAATATATTATTAAATTAAT
Found at i:71711 original size:22 final size:22
Alignment explanation
Indices: 71667--71727 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
71657 AATTAATATT
* * *
71667 ATTATTAATTTAATAATTAATA
1 ATTATTAAATTATTAATCAATA
*
71689 ATTATTAAATTATTAATCGATA
1 ATTATTAAATTATTAATCAATA
*
71711 ATTTATAAATATTATTA
1 A-TTATTAA-ATTATTA
71728 TAAATTTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 19 0.59
23 6 0.19
24 7 0.22
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
ATTATTAAATTATTAATCAATA
Found at i:72312 original size:182 final size:181
Alignment explanation
Indices: 71870--74622 Score: 1047
Period size: 180 Copynumber: 15.1 Consensus size: 181
71860 TTGTACAAAC
* * * ** * ** *
71870 AAAACAATTGTTTTACGACAAAA-GAAAAGATCATAATGATTTGAAATAGATAATCATTCATATA
1 AAAACAATTGTTTTATGACAAAATAAAAAG-TTATAACAATTTGAAAAAGATAATTGTTCAAATA
* * * * * * * * ** *
71934 GTCT-TAACTATTTTAACTGGTTCGGCAATTA-GATTTATTTTTTAATTTTCTTGGTTATTAAGT
65 GT-TATAACTATTTGAAATGGTTTGGTAA-AACAATTTATTTTTTAAATCTCTTACTTATTAATT
* * * * * *
71997 TTCAGAATATTATTAAATTAGTTTTATTTTATTTCGAATAAA-ATAGTATAAATA
128 TTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTA-TATGAATA
* * * * * * * * *
72051 GAACCAATTGTTTGATGATAAAATAAAAGGTTATAACGATTCGAAATAA-ATAATTTTTAAAATA
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAA-AAGATAATTGTTCAAATA
* * * *
72115 GTCAAAACTATTTGAAATGGTTTGGTAAGAA-AATTTACTTTTTAAATCTCTT-GTTGATTAATT
65 GTTATAACTATTTGAAATGGTTTGGTAA-AACAATTTATTTTTTAAATCTCTTACTT-ATTAATT
* * * *
72178 TTTTAAATATTAATAAATTTAGTATTATTTTATTTCAAACAAACTTATATTAATA
128 TTTAAAATATTAATAAA-TTAGTATTATTTTATTTCGAATAAACTTATATGAATA
* * * *
72233 AAAATAATTATTTTATGACAAAATAAAAAGTAATAACAATTTGAAAAAGATAATTGTTCAAATAA
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
* * * * * *
72298 TTATAATTATTTGAACTGGTTTAGTAAATAGAA-TTATTTTCTAAATCTCTTACTTATAAATTTT
66 TTATAACTATTTGAAATGGTTTGGTAAA-ACAATTTATTTTTTAAATCTCTTACTTATTAATTTT
* * * * * *
72362 TAAAATATTAATAAATTACT-TTCATTCTATTTCGAATGAGCTTGTATGAGCT-
130 TAAAATATTAATAAATTAGTATT-ATTTTATTTCGAATAAACTTATATGA-ATA
** * * * * *
72414 AAAGTAATTATTTTA-AATAAAATAAAAAGTTATAACAATTTCAAATAA-ATAATTGTTCATATA
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAA-AAGATAATTGTTCAAATA
* * * * * *
72477 GACT-TAACTGTTTGAAA--G---GGCACAAACAGATTTATTTTTTTAATCTCTTAGTTATTCAT
65 G-TTATAACTATTTGAAATGGTTTGGTA-AAACA-ATTTATTTTTTAAATCTCTTACTTATTAAT
* ** * * *
72536 TTTTAGAATATTGCTAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAACA
127 TTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAATA
* * * *** * * * *
72591 TAAACCATTTTTTTATGATGGAA-CAAAAGATTGTAACAATTTGAAATAGAAAATTGTTCAAATA
1 AAAACAATTGTTTTATGACAAAATAAAAAG-TTATAACAATTTGAAAAAGATAATTGTTCAAATA
* * * *** ** * *
72655 GTCATAACTATTTGAACTAGTTCAATAAAATGATTTATTTTTTAAA--T-GT-CTTATTAATTCT
65 GTTATAACTATTTGAAATGGTTTGGTAAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTT
* * * * * *
72716 TAAAATATTAATAAATTGGTATTATTTTATTTCAAATAAGCTTTTGTG-TTGA
130 TAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAAT-A
* * * * * * *
72768 AAAACAATTGTTTTATGACAAAACAAAAGGTAATAACAATTTGAAATAGATAGTTGTTTAAATGG
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
* * * * * *
72833 CTATAATTATTTGAATTGATTGGGT-AAACTAATTTATTCTTTTAAAT-TAGTTACTTATTAATT
66 TTATAACTATTTGAAATGGTTTGGTAAAAC-AATTTATT-TTTTAAATCT-CTTACTTATTAATT
* * * * * * *
72896 TTTGAAATATTACTAAAGTAGCATTATTTTATTTTGGATAAACTTTTATGAACT-
128 TTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAA-TA
* * * * ** * *
72950 AAAATAATTGTTTTATGACAAAA-CAAATGATCATAATTATTT---TAA-ATAAATGTTCAAATA
1 AAAACAATTGTTTTATGACAAAATAAAAAG-TTATAACAATTTGAAAAAGATAATTGTTCAAATA
** * * * * * *
73010 GCCATAA-TTTTTCAAACTTGTTTGATAAATA-GATTTATTTTTATAAATCTCATGA-TTATTAA
65 GTTATAACTATTTGAAA-TGGTTTGGTAAA-ACAATTTATTTTT-TAAATCTC-TTACTTATTAA
** * * * * * ** *
73072 TTTTTTGAATGTTAATAAATTAGTATTATTTTCTTCCAAATAAGCTTGGATCAACT-
126 TTTTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAA-TA
* * * ** * * * * * ** ** * *
73128 GAAGCAATTATTACATGACTAAAGAAAAGGTCAGAATGATTTGAAATTGATAATTATTCTAATAG
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
* * *
73193 TCT-TAACTATTTGAACTGGTTCGGT-AAACACATTTATTTTTTGAA--TC-T-CTTATTAATTT
66 T-TATAACTATTTGAAATGGTTTGGTAAAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTT
** * * * * * * *
73252 TTGGAATATTATTAAATTAGTAATATTTT-TATCTAAATGAGCTTGTATG-ATAA
129 TTAAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAACTTATATGAAT-A
* * * * * * * * **
73305 AAAATAATTATTTTATGAGAAAACAAAGA-TCAAAACAATTTGAGATTGAT-ATTGATTCAAATA
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTG-TTCAAATA
** * * * * * ** *
73368 GCCATAATTATTTGCATTGATTTGG-AAAACAATTTTAGTTTTTAAAAATCTTGCTTATTAATTT
65 GTTATAACTATTTGAAATGGTTTGGTAAAACAA-TTTATTTTTTAAATCTCTTACTTATTAATTT
* * * * * * *
73432 TCAAAATATTAATTAAGTAGTATTATTTTATTTC--ATATAAGTTTTGATAAATT
129 TTAAAATATTAATAAATTAGTATTATTTTATTTCGAATA-AACTTAT-ATGAATA
* * ** * * * * ** * ** **
73485 GAAACAATTATTTTACAACTAAACAAAAGGTCATAACGGCTTT--ATAATTTTTTTGTGACTAAA
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAAC-AATTTGAAAAAGATAATTGT---T---
* * * ** * *
73548 CAAA-AGGTTA-AAATAATCTGAAATAGATAATTATCCTAATAGTCTTAA-CTATTTGAACTGGT
59 CAAATA-GTTATAACT-ATTTGAAAT-G---GTT-TGGTAA-A-AC--AATTTATTT----T--T
* * * * * * * * *
73610 TCGACAAACACATTTATTTTTTAAATCTCTTACTAATTTTTGGAATACCATTAAATTAGTATTAT
107 T--A-AATCTC--TTACTTATT-AAT-TTTTA--AAATATT--AATA-AATT--A--G-TATTAT
* *
73675 TTTAATAT-GAATAAGCTTATATGAA-A
155 TTT-ATTTCGAATAAACTTATATGAATA
* * * *
73701 AGAAACAATTGTTTTATGACATAATAAAGA-TCATAACAATTTGATATAA-ATAATTGTTCAAAT
1 A-AAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGA-AAAAGATAATTGTTCAAAT
* * ** *
73764 AGTCATAACTATTTGAACT-GTTCCAGTAAATA-AATTTAGTTTTTAAA--TC-T-CTTATTAAT
64 AGTTATAACTATTTGAAATGGTT-TGGTAAA-ACAATTTATTTTTTAAATCTCTTACTTATTAAT
* * * **
73823 TTTTAAAATATTAATAGATTAGTATTATTTTA-TTCTAAATAATCTTGCATGAATA
127 TTTTAAAATATTAATAAATTAGTATTATTTTATTTC-GAATAAACTTATATGAATA
* ** * * * *
73878 GAAACAATTGTTTTATGACAAAA-AAAGGGTCATGACTATTTGAAATAGATAATTGTTCAAAT-G
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
** * * * ** *** * * * *
73941 AACATGACTATTTGGACTTATTCAATAAATA-AATTTATTTTTTAAATCTCCTACCTACTAACTT
66 -TTATAACTATTTGAAATGGTTTGGTAAA-ACAATTTATTTTTTAAATCTCTTACTTATTAATTT
* * * * * * *
74005 TCAAAGTATTAATCAATTAGCATTATTTTATTCCAAATAAACTTGTATGAATA
129 TTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAATA
* * * * * * *
74058 GAAACAATTGTTTTAGGACAAAA-CAAAAGATCATAACTATTTGAAATAAAAAAATTTGTTCAAA
1 AAAACAATTGTTTTATGACAAAATAAAAAG-TTATAACAATTTGAAA-AAGATAA-TTGTTCAAA
* * * * * * * * * *
74122 TAGTCATAACGATTTGAATTAGCTTAGT-AAACAAATTATTTTTAAAATTTTTTACTTATTAATT
63 TAGTTATAACTATTTGAAATGGTTTGGTAAAACAATTTATTTTTTAAATCTCTTACTTATTAATT
* * ** *
74186 TTTTAAATATTAATAAATTAGTATTATTTTATTTCAAATATGCTTGTATGAATA
128 TTTAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAATA
* * * * ** * * * *
74240 GAAACAATTGGTTTAAGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCAAAGAG
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
* * * *
74305 TCATAACTATTTGAACAT-GTTTAG-AAAACATATTTATTTTTTAAAT-TTTTACTTATTAATTA
66 TTATAACTATTTGAA-ATGGTTTGGTAAAACA-ATTTATTTTTTAAATCTCTTACTTATTAATTT
* * *
74367 TTGAAATATTAATAAATTTA-TATTATTTTA-TTCAAAATAAGA-TTGTATGAATA
129 TTAAAATATTAATAAA-TTAGTATTATTTTATTTC-GAATAA-ACTTATATGAATA
* * * * * * *
74420 GAAACAATTGTTTTAGGACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATAG
1 AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
** * * * **
74485 ACATGACTATTT-AAATTTGTTTGGT-AAACAATTTTTTTTTTAAATCTCCAACTTATTAATTTT
66 TTATAACTATTTGAAA-TGGTTTGGTAAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTT
* ** * * *
74548 TAGAATATTAATTGACTAGTATTATTTTATTTTGAATAAACTTGTATGAATA
130 TAAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAATA
*
74600 GAAAC-ATATGTTTTATGACAAAA
1 AAAACAAT-TGTTTTATGACAAAA
74623 CCTAACTATT
Statistics
Matches: 1944, Mismatches: 472, Indels: 313
0.71 0.17 0.11
Matches are distributed among these distances:
174 1 0.00
175 17 0.01
176 171 0.09
177 280 0.14
178 173 0.09
179 46 0.02
180 429 0.22
181 224 0.12
182 380 0.20
183 42 0.02
184 7 0.00
185 4 0.00
186 16 0.01
187 4 0.00
188 4 0.00
189 1 0.00
190 3 0.00
191 1 0.00
192 3 0.00
193 1 0.00
194 7 0.00
195 1 0.00
196 2 0.00
197 2 0.00
198 1 0.00
199 1 0.00
200 2 0.00
202 3 0.00
203 8 0.00
205 7 0.00
206 8 0.00
207 3 0.00
209 5 0.00
211 17 0.01
212 6 0.00
214 2 0.00
215 3 0.00
216 7 0.00
217 38 0.02
218 11 0.01
219 3 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
AAAACAATTGTTTTATGACAAAATAAAAAGTTATAACAATTTGAAAAAGATAATTGTTCAAATAG
TTATAACTATTTGAAATGGTTTGGTAAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTTT
AAAATATTAATAAATTAGTATTATTTTATTTCGAATAAACTTATATGAATA
Found at i:72572 original size:177 final size:180
Alignment explanation
Indices: 71964--72972 Score: 542
Period size: 177 Copynumber: 5.6 Consensus size: 180
71954 TTCGGCAATT
* * * * * * *
71964 AGATTTATTTTTTAATTTTCTTGGTTATTAAGTTTCAGAATATTATTAAATTAGTTTTATTTTAT
1 AGATTTATTTTTTAAATCTCTTAGTTATTAATTTTTA-AATATTAATAAATTAGTATTATTTTAT
** * * * ** * * * * * * *
72029 TTCGAATAAAATAGTATAAATAGAACCAATTGTTTGATGATAAAATAAAAGGTTATAACGA-TTC
65 TTCGAATAAGCTTGTATGAATAAAAATAATTATTTTATAACAAAATAAAAAGTAATAACAATTTC
* * * * *** *
72093 GAAATAA-ATAATTTTTAAAAT-AGTCAAAACTATTTGAA-ATGGTTTGGTAAGA-
130 -AAA-AAGATAATTGTTCAAATAACT-ATAACTATTTGAACA-GGTGCAGCAA-AC
* *
72145 AAATTTACTTTTTAAATCTCTT-GTTGATTAATTTTTTAAATATTAATAAATTTAGTATTATTTT
1 AGATTTATTTTTTAAATCTCTTAGTT-ATTAA-TTTTTAAATATTAATAAA-TTAGTATTATTTT
* * * * * *
72209 ATTTCAAACAAACTTATATTAATAAAAATAATTATTTTATGACAAAATAAAAAGTAATAACAATT
63 ATTTCGAATAAGCTTGTATGAATAAAAATAATTATTTTATAACAAAATAAAAAGTAATAACAATT
* * * * ** * *
72274 TGAAAAAGATAATTGTTCAAATAATTATAATTATTTGAACTGGTTTAGTAAAT
128 TCAAAAAGATAATTGTTCAAATAACTATAACTATTTGAACAGGTGCAGCAAAC
* * * * * *
72327 AGAATTATTTTCTAAATCTCTTACTTATAAATTTTTAAAATATTAATAAATTACT-TTCATTCTA
1 AGATTTATTTTTTAAATCTCTTAGTTATTAATTTTT-AAATATTAATAAATTAGTATT-ATTTTA
* * * * *
72391 TTTCGAATGAGCTTGTATGAGCT-AAAGTAATTATTTTA-AATAAAATAAAAAGTTATAACAATT
64 TTTCGAATAAGCTTGTATGA-ATAAAAATAATTATTTTATAACAAAATAAAAAGTAATAACAATT
* *
72454 TCAAATAA-ATAATTGTTCATATAGACT-TAACTGTTTGAA-AGG-GCA-CAAAC
128 TCAAA-AAGATAATTGTTCAAATA-ACTATAACTATTTGAACAGGTGCAGCAAAC
* * **
72504 AGATTTATTTTTTTAATCTCTTAGTTATTCATTTTTAGAATATTGCTAAATTAGTATTATTTTAT
1 AGATTTATTTTTTAAATCTCTTAGTTATTAATTTTTA-AATATTAATAAATTAGTATTATTTTAT
* * ** * * *** * **
72569 TTCGAATAAGCTTGTATGAACATAAACCATTTTTTTATGATGGAA-CAAAAGATTGTAACAATTT
65 TTCGAATAAGCTTGTATGAATAAAAATAATTATTTTATAACAAAATAAAAAG-TAATAACAATTT
* * * * * **
72633 GAAATAGAAAATTGTTCAAAT-AGTCATAACTATTTGAACTA-GTTCAATAAA-
129 CAAAAAGATAATTGTTCAAATAACT-ATAACTATTTGAAC-AGGTGCAGCAAAC
* * *
72684 ATGATTTATTTTTTAAATGTC----TTATTAATTCTTAAAATATTAATAAATTGGTATTATTTTA
1 A-GATTTATTTTTTAAATCTCTTAGTTATTAATT-TTTAAATATTAATAAATTAGTATTATTTTA
* * * * * * * * *
72745 TTTCAAATAAGCTTTTGTG-TTGAAAAACAATTGTTTTATGACAAAACAAAAGGTAATAACAATT
64 TTTCGAATAAGCTTGTATGAAT-AAAAATAATTATTTTATAACAAAATAAAAAGTAATAACAATT
* * * * ** * ** * * *
72809 TGAAATAGATAGTTGTTTAAATGGCTATAATTATTTGAATTGATTG-GGTAAAC
128 TCAAAAAGATAATTGTTCAAATAACTATAACTATTTGAACAG-GTGCAGCAAAC
* * * * *
72862 TA-ATTTATTCTTTTAAAT-TAGTTACTTATTAATTTTTGAAATATTACTAAAGTAGCATTATTT
1 -AGATTTATT-TTTTAAATCT-CTTAGTTATTAATTTTT-AAATATTAATAAATTAGTATTATTT
* * * * * *
72925 TATTTTGGATAAACTTTTATGAACT-AAAATAATTGTTTTATGACAAAA
62 TATTTCGAATAAGCTTGTATGAA-TAAAAATAATTATTTTATAACAAAA
72973 CAAATGATCA
Statistics
Matches: 646, Mismatches: 138, Indels: 87
0.74 0.16 0.10
Matches are distributed among these distances:
176 3 0.00
177 204 0.32
178 61 0.09
179 4 0.01
180 59 0.09
181 105 0.16
182 203 0.31
183 6 0.01
184 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (180 bp):
AGATTTATTTTTTAAATCTCTTAGTTATTAATTTTTAAATATTAATAAATTAGTATTATTTTATT
TCGAATAAGCTTGTATGAATAAAAATAATTATTTTATAACAAAATAAAAAGTAATAACAATTTCA
AAAAGATAATTGTTCAAATAACTATAACTATTTGAACAGGTGCAGCAAAC
Found at i:74239 original size:362 final size:355
Alignment explanation
Indices: 73684--74623 Score: 1080
Period size: 362 Copynumber: 2.6 Consensus size: 355
73674 TTTTAATATG
* * * * * * *
73684 AATAAGCTTATATGAAAAGAAACAATTGTTTTATGACATAA-TAAAGATCATAACAATTTGATAT
1 AATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAAGATCATAACAATTTGAAAT
* *
73748 AAATAATTGTTCAAATAGTCATAACTATTTGAACTGTTCCAGTAAATAAATTTAGTTTTTAAA--
66 AAATAATTGTTCAAATAGTCATAACTATTTGAATTGTT--AGTAAACAAA-TTA-TTTTTAAATT
* *
73811 TCT-CTTATTAATTTTTAAAATATTAATAGATTAGTATTATTTTA-TTCTAAATAATCTTGCATG
127 TCTACTTATTAATTTTTTAAATATTAATAGATTAGTATTATTTTATTTC-AAAT-ATCTTGTATG
*
73874 AATAGAAACAATTGTTTTATGACAAAA-AAAGGGTCATGACTATTTGAAATAGATAATTGTTCAA
190 AATAGAAACAATTGTTTTATGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCAA
* * * *
73938 ATGA-ACATGACTATTTGGACTTATTCA-ATAAATAAATTTATTTTTTAAATCTCCTACCTACTA
255 A-GAGACATAACTATTTGAACATATTCAGA-AAACAAATTTATTTTTTAAAT-TCCTACCTACTA
* *
74001 ACT-TTCAAAGTATTAATCAA-TTAGCATTATTTTATTCCA
317 ACTATTCAAA-TATTAATAAATTTA-CATTATTTTATTCAA
*
74040 AATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAAGATCATAACTATTTGAAAT
1 AATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAAGATCATAACAATTTGAAAT
* *
74105 AAAAAAATTTGTTCAAATAGTCATAACGATTTGAATTAGCTTAGTAAACAAATTATTTTTAAAAT
66 -AAATAA-TTGTTCAAATAGTCATAACTATTTGAATT-G-TTAGTAAACAAATTATTTTT-AAA-
* *
74170 TTTTTACTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTCAAATATGCTTGTAT
125 TTTCTACTTATTAATTTTTTAAATATTAATAGATTAGTATTATTTTATTTCAAATAT-CTTGTAT
* *
74235 GAATAGAAACAATTGGTTTAAGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCA
189 GAATAGAAACAATTGTTTTATGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCA
* * * * ** * * *
74300 AAGAGTCATAACTATTTGAACATGTTTAGAAAACATATTTATTTTTTAAATTTTTACTTATTAAT
254 AAGAGACATAACTATTTGAACATATTCAGAAAACAAATTTATTTTTTAAATTCCTACCTACTAAC
* *
74365 TATTGAAATATTAATAAATTTATATTATTTTATTCAA
319 TATTCAAATATTAATAAATTTACATTATTTTATTCAA
74402 AATAAGA-TTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAATG-TCATAACAATTTGAA
1 AATAA-ACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAA-GATCATAACAATTTGAA
* * * * * * * *
74465 ATAGATAATAGTTCAAATAGACATGACTATTTAAATTTGTTTGGTAAACAATTTTTTTTTTAAAT
64 ATAAATAATTGTTCAAATAGTCATAACTATTTGAA-TTG-TTAGTAAACAA-ATTATTTTTAAAT
* * * * ** *
74530 CTCCAACTTATTAA-TTTTTAGAATATTAATTGACTAGTATTATTTTATTTTGAATAAACTTGTA
126 -TTCTACTTATTAATTTTTTA-AATATTAATAGATTAGTATTATTTTATTTCAAAT-ATCTTGTA
74594 TGAATAGAAAC-ATATGTTTTATGACAAAAC
188 TGAATAGAAACAAT-TGTTTTATGACAAAAC
74624 CTAACTATTT
Statistics
Matches: 500, Mismatches: 59, Indels: 46
0.83 0.10 0.08
Matches are distributed among these distances:
356 36 0.07
357 25 0.05
358 11 0.02
359 45 0.09
360 107 0.21
361 20 0.04
362 169 0.34
363 86 0.17
364 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.40
Consensus pattern (355 bp):
AATAAACTTGTATGAATAGAAACAATTGTTTTAGGACAAAACAAAAGATCATAACAATTTGAAAT
AAATAATTGTTCAAATAGTCATAACTATTTGAATTGTTAGTAAACAAATTATTTTTAAATTTCTA
CTTATTAATTTTTTAAATATTAATAGATTAGTATTATTTTATTTCAAATATCTTGTATGAATAGA
AACAATTGTTTTATGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCAAAGAGAC
ATAACTATTTGAACATATTCAGAAAACAAATTTATTTTTTAAATTCCTACCTACTAACTATTCAA
ATATTAATAAATTTACATTATTTTATTCAA
Found at i:74692 original size:138 final size:137
Alignment explanation
Indices: 74503--74760 Score: 358
Period size: 138 Copynumber: 1.9 Consensus size: 137
74493 ATTTAAATTT
* * * *
74503 GTTTGGTAAACAATTTTTTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATT-GACTAG
1 GTTTGGTAAACAATTTATTTTTTAAATCTCCAACTAACTAATTTTTAGAATATT-ATTAAACTAG
* * *
74567 TATTATTTTATTTTGAATAAACTTGTATGAATAGAAAC-ATATGTTTTATGACAAAACCTAACTA
65 TATTATTTTAATATGAATAAACTTGTATGAAAAGAAACAAT-TGTTTTATGACAAAACCTAACTA
74631 TTTGAACTG
129 TTTGAACTG
*** * *
74640 GTTTGGTAAACACATTTATTTTTTAAATCTCTTGCTAACTAATTTTTGGAATATTATTAAATTAG
1 GTTTGGTAAACA-ATTTATTTTTTAAATCTCCAACTAACTAATTTTTAGAATATTATTAAACTAG
*
74705 TATTATTTTAATATGAATAAGCTTGTATGAAAAGAAACAATTGTTTTATGACAAAA
65 TATTATTTTAATATGAATAAACTTGTATGAAAAGAAACAATTGTTTTATGACAAAA
74761 TAAAAATCAT
Statistics
Matches: 105, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
137 15 0.14
138 88 0.84
139 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.44
Consensus pattern (137 bp):
GTTTGGTAAACAATTTATTTTTTAAATCTCCAACTAACTAATTTTTAGAATATTATTAAACTAGT
ATTATTTTAATATGAATAAACTTGTATGAAAAGAAACAATTGTTTTATGACAAAACCTAACTATT
TGAACTG
Found at i:75191 original size:182 final size:181
Alignment explanation
Indices: 74898--75312 Score: 442
Period size: 181 Copynumber: 2.3 Consensus size: 181
74888 ATAATTTTAC
* * *
74898 ATGAATAGAAACAATTGTTTTATGACAAAATAAAAGCTCATAACGATTTAAAATAAATAATTGTT
1 ATGAATAGAAACAATTGTTTTATGACAAAATAAAAGATCATAACTATTTGAAATAAATAATTGTT
** ** ** * * * *
74963 CAAATGGACATGACTGTTTGAACTTGTTCGACAAATAGATTTATTTTTTTAAATCTCCTAC-CTA
66 CAAATCAACATGACTGTTCAAACTACTTCGACAAACAAAATTA-TTTTTAAAATCTCCTACTC-A
** **
75027 CTAATTTTTAGAGTATTAATCAATTAGTATTATTTTATTCCAAATAAACTTGT
129 CTAATTTTTAGAAAATTAAGAAATTAGTATTATTTTATTCCAAATAAACTTGT
*
75080 ATGAATAGAAACAATTGTTTTAGGACAAAATAAAAGATCATAACTATTTGAAATAAATAATTGTT
1 ATGAATAGAAACAATTGTTTTATGACAAAATAAAAGATCATAACTATTTGAAATAAATAATTGTT
** * **
75145 CAAA-CAATCATGAC-GATTCAAACTAACTT-GGTAAACAAAATTATTTTTAAAATTTTTTACTC
66 CAAATCAA-CATGACTG-TTCAAACT-ACTTCGACAAACAAAATTATTTTTAAAATCTCCTACTC
* * *** * *
75207 ATTAATTTTTTGAAAATTAAGAAATTAGTATTATTTTATTTGGAATACATTTGT
128 ACTAATTTTTAGAAAATTAAGAAATTAGTATTATTTTATTCCAAATAAACTTGT
* * * * *
75261 ATAAATAGAAACAATTGGTTTATGACAAAACAAAGGGTCATAACTATTTGAA
1 ATGAATAGAAACAATTGTTTTATGACAAAATAAAAGATCATAACTATTTGAA
75313 TGTGTTCAAA
Statistics
Matches: 193, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
181 104 0.54
182 87 0.45
183 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (181 bp):
ATGAATAGAAACAATTGTTTTATGACAAAATAAAAGATCATAACTATTTGAAATAAATAATTGTT
CAAATCAACATGACTGTTCAAACTACTTCGACAAACAAAATTATTTTTAAAATCTCCTACTCACT
AATTTTTAGAAAATTAAGAAATTAGTATTATTTTATTCCAAATAAACTTGT
Found at i:75772 original size:15 final size:15
Alignment explanation
Indices: 75732--75775 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
75722 TTTATTAATT
*
75732 ATAATT-ATAATTAA
1 ATAATTAATATTTAA
*
75746 ATATTATAATATTTAA
1 ATAAT-TAATATTTAA
75762 ATAATTAATATTTA
1 ATAATTAATATTTA
75776 TTTGATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTAATATTTAA
Found at i:76840 original size:28 final size:29
Alignment explanation
Indices: 76791--76872 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
76781 TAATATTATA
*
76791 ATTATATTATAATTCATT-TTAATA-ATACT
1 ATTAT-TTATAATT-ATTATTAATATATAAT
76820 ATTATTTATAATTATTATTAATATATAAT
1 ATTATTTATAATTATTATTAATATATAAT
* * *
76849 ATTA-ATATAAATGTTATTAATATA
1 ATTATTTATAATTATTATTAATATA
76873 ACTTAAATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 3 0.06
28 31 0.66
29 13 0.28
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (29 bp):
ATTATTTATAATTATTATTAATATATAAT
Found at i:76904 original size:22 final size:22
Alignment explanation
Indices: 76879--76971 Score: 66
Period size: 24 Copynumber: 4.1 Consensus size: 22
76869 TATAACTTAA
76879 ATTAATAAATTATATAATTATT
1 ATTAATAAATTATATAATTATT
* * *
76901 ATTATTATATTAAAATAATTCA-T
1 ATTAATAAATT-ATATAATT-ATT
*
76924 ATTTAATAATTGTATATAATATATT
1 A-TTAATAAAT-TATATAAT-TATT
* *
76949 AGTAA-AAATTATAT-ACTATT
1 ATTAATAAATTATATAATTATT
76969 ATT
1 ATT
76972 TATTTAAATA
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
20 6 0.11
21 1 0.02
22 14 0.26
23 12 0.22
24 17 0.31
25 4 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTAATAAATTATATAATTATT
Found at i:77889 original size:12 final size:12
Alignment explanation
Indices: 77874--77903 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
77864 GTTTAATTTA
77874 TATATTAAAAAT
1 TATATTAAAAAT
77886 TATATTAAAAAT
1 TATATTAAAAAT
*
77898 AATATT
1 TATATT
77904 TAATATTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATTAAAAAT
Found at i:77919 original size:19 final size:19
Alignment explanation
Indices: 77897--77958 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
77887 ATATTAAAAA
77897 TAATATTTAATATTTAGTT
1 TAATATTTAATATTTAGTT
*
77916 TAATATTTATTA-TTA-TT
1 TAATATTTAATATTTAGTT
*
77933 AAATAATATTAA-ATTTAGTT
1 TAAT-AT-TTAATATTTAGTT
77953 T-ATATT
1 TAATATT
77959 ATAAATTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
19 19 0.54
20 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
TAATATTTAATATTTAGTT
Found at i:78608 original size:23 final size:22
Alignment explanation
Indices: 78576--78622 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
78566 GTAAATTTTG
*
78576 TAATTTTAA-TATTATAAATAAT
1 TAATTTTAATTATT-CAAATAAT
78598 TAATTTATAATTATTCAAATAAT
1 TAATTT-TAATTATTCAAATAAT
78621 TA
1 TA
78623 TTAAGTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 12 0.55
24 4 0.18
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TAATTTTAATTATTCAAATAAT
Found at i:78759 original size:18 final size:18
Alignment explanation
Indices: 78730--78774 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 18
78720 TAAATTGTAT
78730 ATTAATATTAAT-A-TA-
1 ATTAATATTAATAATTAG
78745 ATTAATATTAATAATTAG
1 ATTAATATTAATAATTAG
*
78763 ATTATTATTAAT
1 ATTAATATTAAT
78775 CTGAGATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 12 0.46
16 1 0.04
17 2 0.08
18 11 0.42
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATTAATATTAATAATTAG
Found at i:79078 original size:33 final size:30
Alignment explanation
Indices: 79041--79128 Score: 72
Period size: 33 Copynumber: 2.8 Consensus size: 30
79031 TTATTAATGT
*
79041 TTAAATATAATTATTATTTAATAATATTTTTAA
1 TTAAATATAATTATTA-TTAATAAT-TTATT-A
*
79074 TTAAACTAT-ATTAATATT-ATAATTTATTA
1 TTAAA-TATAATTATTATTAATAATTTATTA
*
79103 TTAATATATAATAATTAATTATATAA
1 TTAA-ATATAATTATT-ATTA-ATAA
79129 ATTAATATAG
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
29 8 0.18
30 9 0.20
31 8 0.18
32 2 0.04
33 15 0.33
34 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
TTAAATATAATTATTATTAATAATTTATTA
Found at i:79116 original size:21 final size:19
Alignment explanation
Indices: 79082--79124 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
79072 AATTAAACTA
*
79082 TATTAATATTATAATTTAT
1 TATTAATATTATAATTAAT
79101 TATTAATATATAATAATTAAT
1 TATTAATAT-T-ATAATTAAT
79122 TAT
1 TAT
79125 ATAAATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 1 0.05
21 11 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTAATATTATAATTAAT
Found at i:79832 original size:180 final size:178
Alignment explanation
Indices: 79513--80183 Score: 604
Period size: 180 Copynumber: 3.7 Consensus size: 178
79503 CAAATTTTTT
* * * * * *
79513 CTATTTGACAATTATCTATTTAAAATCGTTATGACCTTATATTTTATCATAAAATAA----TTTT
1 CTATTTAACAATTATCTATTTCAAATCGTTATGAACTTTTGTTTTGTCATAAAA-AATTGTTTTT
* * ** * * * *
79574 CATTCATAAAAGCTT-TATCTAAAATAAATAATAATTTTACTTTATTAGTAATTATAAAAAATTG
65 C-TTCATACAAGCTTAT-TC-AGAAT-AA-AATAATACTAATTTATTAAT-ATT-TGAAAAATTA
* * * * *
79638 ATAAGTTAGAGATTTAAAACATAAATCAGTTTATTGAATCAATTCAAATAATTATGG
123 ATAAGTAAGAGATTTAAAAAATAAAT-TGTTTATCGAATCAATTCAAATAGTTATGG
* * *
79695 CCATTTAAGCAATTTTCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAAAAAATTGTTTTT
1 CTATTTAA-CAATTATCTATTTCAAATCGTTATGAACTTTTGTTTTGTCATAAAAAATTGTTTTT
* * *
79760 CATCATACAAGCCTATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATATGTA
65 CTTCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTA
* *
79825 AGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGTTATGA
130 AGAGATTTAAAAAATAAA-TTGTTTATCGAATCAATTCAAATAGTTATGG
* * * *
79875 CTATTTGAACAATTATATATTTCCAATCGTTAT-AATCTTTTGTTTTGTCATAATACAATTATTT
1 CTATTT-AACAATTATCTATTTCAAATCGTTATGAA-CTTTTGTTTTGTCATAA-AAAATTGTTT
* * * *
79939 ATCTTCATACAAGCTTATTC-GAAATAAAATAATACTAATCTAGTAATATTATG-AAATTTAATA
63 TTCTTCATACAAGCTTATTCAG-AATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATA
* * * * * * *
80002 ACTAATAGATTTAAAAAATAAATTTTTTACCAAACCAATTCAAATAGTTAAGG
126 AGTAAGAGATTTAAAAAATAAATTGTTTATCGAATCAATTCAAATAGTTATGG
* * * * * * *
80055 CTATATGAATAATTATCTATTTTCAAATTGTTATGACCTTTTGTTTTGTCGTAAAACAAATGCTT
1 CTAT-TTAACAATTATCTA-TTTCAAATCGTTATGAACTTTTGTTTTGTCATAAAA-AATTGTTT
* ** * * * *
80120 TTGTTCATTTAAG-TTTTTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
63 TTCTTCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAG
80184 ATATTTAATA
Statistics
Matches: 398, Mismatches: 73, Indels: 38
0.78 0.14 0.07
Matches are distributed among these distances:
179 3 0.01
180 177 0.44
181 128 0.32
182 27 0.07
183 41 0.10
184 4 0.01
185 12 0.03
186 6 0.02
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.42
Consensus pattern (178 bp):
CTATTTAACAATTATCTATTTCAAATCGTTATGAACTTTTGTTTTGTCATAAAAAATTGTTTTTC
TTCATACAAGCTTATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAA
GAGATTTAAAAAATAAATTGTTTATCGAATCAATTCAAATAGTTATGG
Found at i:81758 original size:13 final size:14
Alignment explanation
Indices: 81650--81760 Score: 53
Period size: 13 Copynumber: 8.6 Consensus size: 14
81640 TTGTATAACT
* *
81650 ATTAAATAATAATA
1 ATTAATTAATATTA
*
81664 TTTAATTAA-A-TA
1 ATTAATTAATATTA
*
81676 ATTACTTAAT-TTA
1 ATTAATTAATATTA
*
81689 TTTAA-T-ATATTAA
1 ATTAATTAATATT-A
* **
81702 ATAAATTCTTATTA
1 ATTAATTAATATTA
*
81716 ATTATTTAATA-TA
1 ATTAATTAATATTA
*
81729 A-T-A-GAATATTA
1 ATTAATTAATATTA
81740 ATTAATTAATATT-
1 ATTAATTAATATTA
81753 ATTAATTA
1 ATTAATTA
81761 TCTAAATATT
Statistics
Matches: 71, Mismatches: 16, Indels: 21
0.66 0.15 0.19
Matches are distributed among these distances:
10 4 0.06
11 5 0.07
12 14 0.20
13 22 0.31
14 22 0.31
15 4 0.06
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:81833 original size:22 final size:22
Alignment explanation
Indices: 81808--81866 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
81798 TTCAATTGTT
81808 TAATAAAATTAATA-TTATTATA
1 TAATAAAA-TAATATTTATTATA
* *
81830 TAATTATATAATATTTATTATA
1 TAATAAAATAATATTTATTATA
*
81852 T--TATAATAATATTTA
1 TAATAAAATAATATTTA
81867 ATTTTAATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
20 11 0.35
21 5 0.16
22 15 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TAATAAAATAATATTTATTATA
Found at i:81954 original size:17 final size:16
Alignment explanation
Indices: 81931--81976 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
81921 CATTATGTTA
81931 ATAATATTAAGTAATT
1 ATAATATTAAGTAATT
*
81947 ATTAATATTAATTAAATT
1 A-TAATATTAAGT-AATT
81965 ATAA-ATTAAGTA
1 ATAATATTAAGTA
81977 CTTTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 1 0.04
16 7 0.27
17 13 0.50
18 5 0.19
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (16 bp):
ATAATATTAAGTAATT
Found at i:82090 original size:20 final size:19
Alignment explanation
Indices: 82039--82102 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
82029 AAATATTAGT
*
82039 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
82057 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
82078 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
82098 TATTA
1 TATTA
82103 GTTACAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:82225 original size:20 final size:20
Alignment explanation
Indices: 82196--82263 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 20
82186 TTAATTTATT
*
82196 TATTACTTATTAATAATAAA
1 TATTAATTATTAATAATAAA
* *
82216 TATTAATTATTTATTATAAA
1 TATTAATTATTAATAATAAA
* *
82236 -CTTAA-T-TT-ATCATAAA
1 TATTAATTATTAATAATAAA
*
82252 TATTAATAATTA
1 TATTAATTATTA
82264 CTATTAATAT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
16 7 0.19
17 6 0.16
18 1 0.03
19 6 0.16
20 17 0.46
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTAATTATTAATAATAAA
Found at i:82559 original size:23 final size:23
Alignment explanation
Indices: 82465--82575 Score: 84
Period size: 23 Copynumber: 4.7 Consensus size: 23
82455 TAAATAATTA
82465 TATATATTAATCTATTTATTATAT
1 TATATATTAATCTATTTATT-TAT
* * *
82489 AATA-ATTATTATATTTATTTAT
1 TATATATTAATCTATTTATTTAT
**
82511 CTATCAATATT-ATAAATTAATATTTAT
1 -TAT--ATATTAATCTATT--TATTTAT
82538 TATATATTAATCTATTTATTTAT
1 TATATATTAATCTATTTATTTAT
*
82561 TTTA-ATTAATACTAT
1 TATATATTAAT-CTAT
82576 AAATTAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
22 9 0.13
23 29 0.41
24 8 0.11
25 11 0.16
26 6 0.09
27 7 0.10
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (23 bp):
TATATATTAATCTATTTATTTAT
Found at i:82606 original size:52 final size:54
Alignment explanation
Indices: 82479--82614 Score: 145
Period size: 52 Copynumber: 2.5 Consensus size: 54
82469 TATTAATCTA
* * * *
82479 TTTATTATATAATAATTATTATATTTATTTATCTATCAATATTATAAATTAATATT
1 TTTAATAT-TAATAATTATT-TATTTATTTATCAATCAATACTATAAATTAATAAT
* *
82535 TATTATATATTAAT--CTATTTATTTATTT-T-AATTAATACTATAAATTAATAAT
1 T-TTA-ATATTAATAATTATTTATTTATTTATCAATCAATACTATAAATTAATAAT
82587 TTTAATATTAATAATTATTTAATTTATT
1 TTTAATATTAATAATTATTT-ATTTATT
82615 GTAAAACTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
50 8 0.12
51 3 0.04
52 25 0.37
53 8 0.12
54 9 0.13
55 4 0.06
56 1 0.01
57 7 0.10
58 3 0.04
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (54 bp):
TTTAATATTAATAATTATTTATTTATTTATCAATCAATACTATAAATTAATAAT
Found at i:82748 original size:21 final size:21
Alignment explanation
Indices: 82684--82748 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
82674 TATTAAGAAT
82684 AATT-AATTATTATATCAATTA
1 AATTAAATTATTATAT-AATTA
** *
82705 TTTTAATAATTAATATAATAATTA
1 AATT-A-AATTATTAT-ATAATTA
82729 AATTAAATTATTATATAATT
1 AATTAAATTATTATATAATT
82749 TACTACTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 8 0.24
22 8 0.24
23 1 0.03
24 15 0.44
25 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTAAATTATTATATAATTA
Found at i:82797 original size:27 final size:27
Alignment explanation
Indices: 82759--82811 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82749 TACTACTTAT
*
82759 AATTATAAATTAATAA-ATTATTATATC
1 AATTATAAATT-ATAAGATTATAATATC
*
82786 AATTATATATTATAAGATTATAATAT
1 AATTATAAATTATAAGATTATAATAT
82812 TTATTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
AATTATAAATTATAAGATTATAATATC
Found at i:82799 original size:40 final size:41
Alignment explanation
Indices: 82666--82800 Score: 113
Period size: 40 Copynumber: 3.2 Consensus size: 41
82656 TTATATATTT
* *
82666 TATATTATTATTA-AGAA-TAATTAATTATTATATCAATTA
1 TATATTATAATTATAGAATTAATAAATTATTATATCAATTA
*
82705 T-T-TTAATAATTAATATAATAATTAAATTAAATTATTATAT-AATT-
1 TATATT-ATAA-T--TAT-AGAATT-AA-TAAATTATTATATCAATTA
82749 TACTACTTATAATTATA-AATTAATAAATTATTATATCAATTA
1 TA-TA-TTATAATTATAGAATTAATAAATTATTATATCAATTA
82791 TATATTATAA
1 TATATTATAA
82801 GATTATAATA
Statistics
Matches: 78, Mismatches: 3, Indels: 29
0.71 0.03 0.26
Matches are distributed among these distances:
37 2 0.03
38 4 0.05
39 2 0.03
40 19 0.24
41 10 0.13
42 6 0.08
43 4 0.05
44 5 0.06
45 6 0.08
46 14 0.18
47 4 0.05
48 2 0.03
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (41 bp):
TATATTATAATTATAGAATTAATAAATTATTATATCAATTA
Found at i:82860 original size:35 final size:35
Alignment explanation
Indices: 82808--82874 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
82798 TAAGATTATA
* *
82808 ATATTTATTTAATAATAAATAATTATAA-ATAAGGT
1 ATATTAATTTAATAAT-AATAACTATAATATAAGGT
82843 ATATTAATTT-ATAAATAATAACTATAATATAA
1 ATATTAATTTAAT-AATAATAACTATAATATAA
82875 TTACAAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 12 0.43
35 16 0.57
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (35 bp):
ATATTAATTTAATAATAATAACTATAATATAAGGT
Found at i:82869 original size:34 final size:36
Alignment explanation
Indices: 82808--82874 Score: 86
Period size: 34 Copynumber: 1.9 Consensus size: 36
82798 TAAGATTATA
* *
82808 ATATTTATTTAATAATAAATAATTATAA-ATAAGGT
1 ATATTAATTTAATAATAAATAACTATAATATAAGGT
82843 ATATTAATTT-ATAA-ATAATAACTATAATATAA
1 ATATTAATTTAATAATA-AATAACTATAATATAA
82875 TTACAAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 1 0.04
34 14 0.50
35 13 0.46
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (36 bp):
ATATTAATTTAATAATAAATAACTATAATATAAGGT
Found at i:83407 original size:182 final size:176
Alignment explanation
Indices: 83016--83576 Score: 517
Period size: 182 Copynumber: 3.1 Consensus size: 176
83006 TTATTTCATA
* * *
83016 TTTTTGTTCATAGAAGCTTATTCGAAATAAAATAGTACTAATCTAATAATATTTTAAAAATTAAT
1 TTTTTGTTCATATAAGCTTATTCGAAATAAAATA-AACTAATCTATTAATA-TTTAAAAATTAAT
** * * * * **
83081 AACTAAGAGAACT-AAAAATAAATTTGTTTATCGAACCACTTTAAATATTTAAGACTACAATAAC
64 AA-TAAGAGATTTAAAAAATAAATTTGTTTATCAAACCA-ATTAAATAATTATGACTA-TTTAAC
* *
83145 AATTATCTATTTCAAAACATTATGACTTTTTGTTTTATCATAAAACAAAAT
126 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAAAAT
*** * * *
83196 TTTCAATTCATACT-AGCTTATTTGAAATAAAATAAAATAAATTTATTAATATTTCAAAAATTAA
1 TTTTTGTTCATA-TAAGCTTATTCGAAATAAAATAAACT-AATCTATTAATATTT-AAAAATTAA
* * *
83260 TAAGTAAGAGATTTAAAAAAAAAAATTTGTTTACCTAACCAATTCAAATAATTATGACTATTTGA
63 TAA-TAAGAGATTT-AAAAAATAAATTTGTTTATCAAACCAATT-AAATAATTATGACTATTT-A
* * *
83325 ACAATTATGTATTTTAAATCATTATGACCTTTTGTTTTGTCATAAAAC-AAAT
124 ACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAAAAT
* * * ** *
83377 GTTTTTGTTCATATAAGTTTGTTCGAAATAAAGTAATACTAATCTATTAATATTTTGAAA--ACT
1 -TTTTTGTTCATATAAGCTTATTCGAAATAAAATAA-ACTAATCTATTAATATTTAAAAATTAAT
* * * *
83440 AATAAGAGATTTAAAAAATAAATCTATTTATCAAATCAATTAAATTATTATGACTATTTAACAAA
64 AATAAGAGATTTAAAAAATAAATTTGTTTATCAAACCAATTAAATAATTATGACTATTTAAC-AA
* ** ** * *
83505 TTATTTATTTCAAATTGTTATGATTTTTTGTTCTA-C-TATAAA-ATAAT
128 TTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATA-AAACAAAAT
*
83552 TGTTTATGTTCATACAAGCTTATTC
1 T-TTT-TGTTCATATAAGCTTATTC
83577 AATGAATTAA
Statistics
Matches: 310, Mismatches: 56, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
174 3 0.01
175 13 0.04
176 62 0.20
177 23 0.07
178 10 0.03
179 9 0.03
180 58 0.19
181 11 0.04
182 119 0.38
183 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (176 bp):
TTTTTGTTCATATAAGCTTATTCGAAATAAAATAAACTAATCTATTAATATTTAAAAATTAATAA
TAAGAGATTTAAAAAATAAATTTGTTTATCAAACCAATTAAATAATTATGACTATTTAACAATTA
TCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAAAAT
Found at i:83926 original size:29 final size:29
Alignment explanation
Indices: 83903--83995 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 29
83893 ATGTATTTAT
83903 TATTAATAATTTAATAATATTGTATAATA
1 TATTAATAATTTAATAATATTGTATAATA
* * *
83932 TATT-ATAATTACAATTATATTAT-TAATA
1 TATTAATAATT-TAATAATATTGTATAATA
* *
83960 TATTAATAAATATTAAT-ATATAGTATTAT-
1 TATTAAT-AAT-TTAATAATATTGTATAATA
83989 TATTAAT
1 TATTAAT
83996 GACTATAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
28 15 0.29
29 27 0.52
30 9 0.17
31 1 0.02
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (29 bp):
TATTAATAATTTAATAATATTGTATAATA
Found at i:85499 original size:19 final size:19
Alignment explanation
Indices: 85475--85511 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
85465 AGCAATTAAA
85475 TTTAT-AAATATTATATAAG
1 TTTATAAAATATT-TATAAG
85494 TTTATAAAATATTTATAA
1 TTTATAAAATATTTATAA
85512 TTATTGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
TTTATAAAATATTTATAAG
Found at i:85532 original size:8 final size:8
Alignment explanation
Indices: 85519--85578 Score: 56
Period size: 8 Copynumber: 7.8 Consensus size: 8
85509 TAATTATTGA
85519 TTAATAAT
1 TTAATAAT
85527 TTAATAAT
1 TTAATAAT
85535 TTAATAA-
1 TTAATAAT
*
85542 TTATTAAT
1 TTAATAAT
85550 ATT-A-AA-
1 -TTAATAAT
85556 TTAATAAT
1 TTAATAAT
*
85564 ATTATTAAT
1 -TTAATAAT
85573 TTAATA
1 TTAATA
85579 TAACATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
5 2 0.05
6 1 0.02
7 10 0.24
8 20 0.48
9 9 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTAATAAT
Found at i:85542 original size:30 final size:29
Alignment explanation
Indices: 85504--85573 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
85494 TTTATAAAAT
* *
85504 ATTT-ATAATTATTGATTAATAATTTAATA
1 ATTTAATAATTATT-AATAATAAATTAATA
*
85533 ATTTAATAATTATTAATATTAAATTAATA
1 ATTTAATAATTATTAATAATAAATTAATA
*
85562 ATATTATTAATT
1 AT-TTAATAATT
85574 TAATATAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (29 bp):
ATTTAATAATTATTAATAATAAATTAATA
Found at i:85563 original size:14 final size:15
Alignment explanation
Indices: 85522--85578 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 15
85512 TTATTGATTA
85522 ATAATTTAATAAT-TT
1 ATAA-TTAATAATATT
*
85537 AATAATTATTAATATT
1 -ATAATTAATAATATT
85553 A-AATTAATAATATT
1 ATAATTAATAATATT
85567 ATTAATTTAATA
1 A-TAA-TTAATA
85579 TAACATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 13 0.37
15 8 0.23
16 8 0.23
17 6 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATAATTAATAATATT
Found at i:86163 original size:24 final size:23
Alignment explanation
Indices: 86126--86175 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
86116 AAAATACCAA
86126 ATTTAATATTTAATATTATAAATT
1 ATTTAATATTTAATA-TATAAATT
*
86150 ATTTAAT-TTGTAATATATTAATT
1 ATTTAATATT-TAATATATAAATT
86173 ATT
1 ATT
86176 AAAATTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTAATATTTAATATATAAATT
Found at i:86181 original size:24 final size:24
Alignment explanation
Indices: 86136--86187 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
86126 ATTTAATATT
*
86136 TAATATTATAAATTATTTAATTTG
1 TAATATTATAAATTATTAAATTTG
* * *
86160 TAATA-TATTAATTATTAAAATTA
1 TAATATTATAAATTATTAAATTTG
86183 TAATA
1 TAATA
86188 AAACATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TAATATTATAAATTATTAAATTTG
Found at i:86186 original size:23 final size:23
Alignment explanation
Indices: 86128--86187 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
86118 AATACCAAAT
*
86128 TTAATATTTAATATTATAAATTA
1 TTAAAATTTAATATTATAAATTA
* * *
86151 TTTAATTTGTAATA-TATTAATTA
1 TTAAAATT-TAATATTATAAATTA
86174 TTAAAATTATAATA
1 TTAAAATT-TAATA
86188 AAACATTAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAAAATTTAATATTATAAATTA
Found at i:86393 original size:46 final size:43
Alignment explanation
Indices: 86320--86481 Score: 132
Period size: 46 Copynumber: 3.6 Consensus size: 43
86310 ATAAGTTATA
* * *
86320 ATAATAACTATTAAATATATTAATATTTATTAATTATTTTATATAT
1 ATAATAATTATTAAATA-A-TATTATTTATTAATTATATTATAT-T
** *
86366 ATAATAATTATTAATATTAATATTATTTATTATAAAACAATTA-ATT
1 ATAATAATTATTAA-A-TAATATTATTTATTA-ATTA-TATTATATT
*
86412 AATAAT-ATTATCTAATATAATATAATTTATTAATTATATTATACTT
1 -ATAATAATTAT-TAA-ATAATATTATTTATTAATTATATTATA-TT
*
86458 A-AATTATTATTAAATAATATTATT
1 ATAATAATTATTAAATAATATTATT
86482 ATTTAAATTA
Statistics
Matches: 96, Mismatches: 11, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
43 10 0.10
44 10 0.10
45 9 0.09
46 46 0.48
47 16 0.17
48 5 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (43 bp):
ATAATAATTATTAAATAATATTATTTATTAATTATATTATATT
Found at i:86399 original size:37 final size:38
Alignment explanation
Indices: 86337--86422 Score: 90
Period size: 37 Copynumber: 2.3 Consensus size: 38
86327 CTATTAAATA
* * *
86337 TATTAATATT-TATTAATTATTTTATATATATAA-TAAT
1 TATTAATATTATATTAATTATATTATA-AAACAATTAAT
86374 TATTAATATTAATATT-ATT-TATTATAAAACAATTAAT
1 TATTAATATT-ATATTAATTATATTATAAAACAATTAAT
*
86411 TAATAATATTAT
1 TATTAATATTAT
86423 CTAATATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
36 6 0.14
37 29 0.69
38 3 0.07
39 4 0.10
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (38 bp):
TATTAATATTATATTAATTATATTATAAAACAATTAAT
Found at i:86418 original size:31 final size:31
Alignment explanation
Indices: 86375--86453 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
86365 TATAATAATT
* * *
86375 ATTAA-TATTAATATTATTTATTATAAAACA
1 ATTAATTAATAATATTATCTAATATAAAACA
* *
86405 ATTAATTAATAATATTATCTAATATAATATA
1 ATTAATTAATAATATTATCTAATATAAAACA
* *
86436 ATTTATTAATTATATTAT
1 ATTAATTAATAATATTAT
86454 ACTTAAATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 5 0.12
31 36 0.88
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (31 bp):
ATTAATTAATAATATTATCTAATATAAAACA
Found at i:86434 original size:15 final size:14
Alignment explanation
Indices: 86364--86594 Score: 60
Period size: 15 Copynumber: 16.1 Consensus size: 14
86354 TATTTTATAT
86364 ATATAATAATTATTA
1 ATATAAT-ATTATTA
86379 ATATTAATATTATTTA
1 ATA-TAATATTA-TTA
* * **
86395 TTATAAAACAATTA
1 ATATAATATTATTA
86409 ATTAATAATATTATCTA
1 A-T-ATAATATTAT-TA
* *
86426 ATATAATATAATTT
1 ATATAATATTATTA
86440 AT-TAAT-TATATT-
1 ATATAATAT-TATTA
86452 ATACTTAAATTATTATTA
1 ATA--T-AA-TATTATTA
86470 A-ATAATATTATT-
1 ATATAATATTATTA
*
86482 ATTTAA-ATTAAATTA
1 ATATAATATT--ATTA
*
86497 A-ATAA-A-GATTA
1 ATATAATATTATTA
*
86508 A-A-ATTATTATTA
1 ATATAATATTATTA
86520 A-ATAAGTTATTGATTA
1 ATATAA--TATT-ATTA
86536 ATA-AATATTATTA
1 ATATAATATTATTA
* *
86549 CTCATAA-AATATTA
1 AT-ATAATATTATTA
*
86563 AT-TAAACTACTAATTA
1 ATAT-AA-TA-TTATTA
86579 ATAATAATATTATTA
1 AT-ATAATATTATTA
86594 A
1 A
86595 GTTATAATAA
Statistics
Matches: 161, Mismatches: 23, Indels: 64
0.65 0.09 0.26
Matches are distributed among these distances:
10 1 0.01
11 7 0.04
12 14 0.09
13 25 0.16
14 27 0.17
15 38 0.24
16 34 0.21
17 12 0.07
18 3 0.02
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (14 bp):
ATATAATATTATTA
Found at i:86480 original size:27 final size:26
Alignment explanation
Indices: 86438--86524 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 26
86428 ATAATATAAT
*
86438 TTATT-AATTATATTATACTTAAATTA
1 TTATTAAATAATATTATA-TTAAATTA
86464 TTATTAAATAATATTATTATTTAAATTA
1 TTATTAAATAATATTA-TA-TTAAATTA
* * *
86492 -AATTAAATAA-A-GAT-TAAAATTA
1 TTATTAAATAATATTATATTAAATTA
86514 TTATTAAATAA
1 TTATTAAATAA
86525 GTTATTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
22 7 0.13
23 9 0.17
24 1 0.02
25 1 0.02
26 6 0.12
27 18 0.35
28 10 0.19
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (26 bp):
TTATTAAATAATATTATATTAAATTA
Found at i:87157 original size:12 final size:12
Alignment explanation
Indices: 87140--87173 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
87130 TTTTAATATT
*
87140 TATTAATTATAC
1 TATTAATTATAA
87152 TATTAATTATAA
1 TATTAATTATAA
87164 TAATTAATTA
1 T-ATTAATTA
87174 GTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (12 bp):
TATTAATTATAA
Found at i:87159 original size:28 final size:28
Alignment explanation
Indices: 87126--87188 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
87116 TTATATATTA
* * *
87126 ATAATTTTAAT-ATTTATTAATTATACT
1 ATAATTATAATAATTAATTAATTATAAT
*
87153 ATTAATTATAATAATTAATTAGTTATAAT
1 A-TAATTATAATAATTAATTAATTATAAT
87182 ATAATTA
1 ATAATTA
87189 AGCTATAGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.03
28 15 0.50
29 14 0.47
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (28 bp):
ATAATTATAATAATTAATTAATTATAAT
Done.