Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167865.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68655
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Found at i:1297 original size:1 final size:1
Alignment explanation
Indices: 1262--1288 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
1252 ACCCATTTCC
1262 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1289 AAATTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:3346 original size:21 final size:21
Alignment explanation
Indices: 3288--3347 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
3278 TTCTTATTTG
3288 TAATAATATTTTTTTTACGTTA
1 TAATAATA-TTTTTTTACGTTA
* * * *
3310 TCAGT-TTAATTATTTACGTTA
1 T-AATAATATTTTTTTACGTTA
3331 TAATAATATTTTTTTAC
1 TAATAATATTTTTTTAC
3348 ACTTGTTCTT
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
20 2 0.07
21 21 0.75
22 3 0.11
23 2 0.07
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
TAATAATATTTTTTTACGTTA
Found at i:4021 original size:221 final size:219
Alignment explanation
Indices: 3399--4810 Score: 1640
Period size: 221 Copynumber: 6.4 Consensus size: 219
3389 TTTTTTAGAG
* * * *
3399 TATCACAATACTCTCTTAGAGTGTTACAATA-TTTTAAACACATTTTAT-GCTAAATGATACTAA
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTT-AA-ACATTTTATATC-AAATGATACTAA
* ** * *
3462 TTTTACAATAATTTTCACCTTTTTACATTAACATTTATTTATTGGTTTAGACA-TATTCTTTGGG
63 TTTTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATA-ATTATTCTTTGGG
* * *
3526 TTTAAGGTAATAATTTTTTTACGTTGTCAATTTAATTATTTATGTTACAATAATAT-TTTTTATG
127 TTTAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACG
*
3590 CTTGTTCTTATCTTTATTATC-TTTAGAAT
192 CTTGTTTTTA-CTTTATTA-CGTTTAGAAT
* * * * * * * *
3619 TATAACTACTCTCTCTTAGGATATTACAACACTTCTAACACATTTTATGTCAAATGATACCAATT
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAA-ACATTTTATATCAAATGATACTAATT
* * * *
3684 TTACGATAATTCTCACATTTTTACATTGACATTTATTTATTGGTTTATAATTATTCTTTGGGTTT
65 TTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGTTT
* * * *
3749 AAGGTAATAATTTTTTTACGTTGTCAATTTAATTATTTATGTTTCAATAATATCTTTTTACACTT
130 AAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGCTT
*
3814 GTTTTTACTATCATTACGTTTAGAAT
195 GTTTTTACT-TTATTACGTTTAGAAT
* * * *
3840 TGTTACAACACTCTCTTAGGGTGTTACAACACTTTTAATACATTTTTATACCAAATGATAATAAT
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAA-ACA-TTTTATATCAAATGATACTAAT
* * *
3905 TTTACAATAATTCTCATATTTTTATGTTAACATTTATTTATTGGTTTA-AATTATTCATTGGGCT
64 TTTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGTT
* * * * * * *
3969 TAGGGTAACAATTCTTTTATGTTATCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCT
129 TAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGCT
*
4034 TGTTTTTACATTTATTACGTTTGGAAT
194 TGTTTTTAC-TTTATTACGTTTAGAAT
* * ** * * *
4061 TATCACAACTCTATCTTAGGGTGTTACGGCA-TTCTAACACATTTTAT-TCTGAATGTTA-TCAA
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAA-ACATTTTATATC-AAATGATACT-AA
* *
4123 TTTTACGATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTAGGT
63 TTTTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGT
* * * ** * * *
4188 TTAAAGTTATAATTATTTTATATTGTCAATTTAATTATTTGCATTACAATAATATCTTTTTATGC
128 TTAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGC
*
4253 TTATTTTTACCTTTATTACGTTTAGAAT
193 TTGTTTTTA-CTTTATTACGTTTAGAAT
* * * * *
4281 TATCACAATACTCTCTTAGAGTGCTACGACACTTTTAACATATTTTATATCAAATGATACTAATT
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAA-ACATTTTATATCAAATGATACTAATT
* * * *
4346 TTACTATAATTCTCACATTTTTACGTTAACATTTATTTTTTGGTTTATAATTGTTCTTTGGGTTT
65 TTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGTTT
* * * *
4411 AAGGTAATAATTCTTTTACGTTGTTAATTTAATTATTAACGTTATAATAATATCTTTTTACACTT
130 AAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGCTT
* * * **
4476 ATTCTTATTTTTATTTTGTTTAGAAT
195 GTTTTTA-CTTTATTACGTTTAGAAT
* * ** * *
4502 TATCACAATACTCTCTTAGGGGGTTATGATACTTCT-AACATATATTATATCAAATGATACTAAT
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAAACAT-T-TTATATCAAATGATACTAAT
* * * *
4566 TTTACGATAATTCTCATATTTTTACGTTAACATTTATTTATTAGTTTAGAAATATTCTTTGGGTT
64 TTTACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGTT
* *
4631 TAAGGTAATAATTCTTTTACATTGTCAATTTAATTATTTACATTACAATAATATCTTTTTACGCT
129 TAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGCT
* * * * *
4696 TGTTCTTTCCTTCATTATGTCTAAAAT
194 TGTT-TTTACTTTATTACGTTTAGAAT
* * *
4723 TATCACAACTCTCTCTTAGGGTGTTACAACA-TTTCTAACACATTTTATGTCAAATGATAATAAT
1 TATCACAACACTCTCTTAGGGTGTTACAACACTTT-TAA-ACATTTTATATCAAATGATACTAAT
4787 TTTACAATAATTCTCATATTTTTA
64 TTTACAATAATTCTCATATTTTTA
4811 TTTTAATAAA
Statistics
Matches: 1019, Mismatches: 152, Indels: 41
0.84 0.13 0.03
Matches are distributed among these distances:
218 2 0.00
219 65 0.06
220 288 0.28
221 591 0.58
222 69 0.07
223 4 0.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (219 bp):
TATCACAACACTCTCTTAGGGTGTTACAACACTTTTAAACATTTTATATCAAATGATACTAATTT
TACAATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATAATTATTCTTTGGGTTTA
AGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTACAATAATATCTTTTTACGCTTG
TTTTTACTTTATTACGTTTAGAAT
Found at i:4147 original size:441 final size:438
Alignment explanation
Indices: 3399--4810 Score: 1789
Period size: 441 Copynumber: 3.2 Consensus size: 438
3389 TTTTTTAGAG
* * * * * *
3399 TATCACAATACTCTCTTAGAGTGTTACAATATTTTAAACACATTTTATGCTAAATGATACTAATT
1 TATCACAACACTCTCTTAGAGTGTTACAACATTTTAAACA-TTTTTATACCAAATGATAATAATT
* * *
3464 TTACAATAATTTTCACCTTTTTACATTAACATTTATTTATTGGTTTAGACA-TATTCTTTGGGTT
65 TTACAATAATTCTCACATTTTTACGTTAACATTTATTTATTGGTTTAGA-ATTATTCTTTGGGTT
* * *
3528 TAAGGTAATAATTTTTTTACGTTGTCAATTTAATTATTTATGTTACAATAATA-TTTTTTATGCT
129 TAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCT
* * * * *
3592 TGTTCTTATCTTTATTATC-TTTAGAATTATAACTACTCTCTCTTAGGATATTACAACACTTCTA
194 TGTTCTTA-CTTTATTA-CGTTTAGAATTATCACAACTCTCTCTTAGGGTGTTACGACACTTCTA
* * * *
3656 ACACATTTTATGTCAAATGATACCAATTTTACGATAATTCTCACATTTTTACATTGACATTTATT
257 ACACATTTTATATCAAATGATA-CAATTTTACGATAATTCTCATATTTTTACGTTAACATTTATT
* *
3721 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTTTTTTACGTTGTCAATTTAATTATT
321 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTATTTTACATTGTCAATTTAATTATT
** * *
3786 TATGTTTCAATAATATCTTTTTACACTTGTTTTTACTATCATTACGTTTAGAAT
386 TACATTACAATAATATCTTTTTACGCTTGTTTTTACT-TCATTACGTTTAGAAT
* * *
3840 TGTTACAACACTCTCTTAGGGTGTTACAACACTTTTAATACATTTTTATACCAAATGATAATAAT
1 TATCACAACACTCTCTTAGAGTGTTACAACA-TTTTAA-ACATTTTTATACCAAATGATAATAAT
* * * *
3905 TTTACAATAATTCTCATATTTTTATGTTAACATTTATTTATTGGTTTA-AATTATTCATTGGGCT
64 TTTACAATAATTCTCACATTTTTACGTTAACATTTATTTATTGGTTTAGAATTATTCTTTGGGTT
* * * *
3969 TAGGGTAACAATTCTTTTATGTTATCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCT
129 TAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCT
* * * *
4034 TGTTTTTACATTTATTACGTTTGGAATTATCACAACTCTATCTTAGGGTGTTACGGCA-TTCTAA
194 TGTTCTTAC-TTTATTACGTTTAGAATTATCACAACTCTCTCTTAGGGTGTTACGACACTTCTAA
* *
4098 CACATTTTAT-TCTGAATGTTATCAATTTTACGATAATTCTCATATTTTTACGTTAACATTTATT
258 CACATTTTATATC-AAATGATA-CAATTTTACGATAATTCTCATATTTTTACGTTAACATTTATT
* * * *
4162 TATTGGTTTATAATTATTCTTTAGGTTTAAAGTTATAATTATTTTATATTGTCAATTTAATTATT
321 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTATTTTACATTGTCAATTTAATTATT
* * * *
4227 TGCATTACAATAATATCTTTTTATGCTTATTTTTACCTTTATTACGTTTAGAAT
386 TACATTACAATAATATCTTTTTACGCTTGTTTTTA-CTTCATTACGTTTAGAAT
* * * * *
4281 TATCACAATACTCTCTTAGAGTGCTACGACACTTTT-AACATATTTTATATCAAATGATACTAAT
1 TATCACAACACTCTCTTAGAGTGTTACAACA-TTTTAAACAT-TTTTATACCAAATGATAATAAT
* * * *
4345 TTTACTATAATTCTCACATTTTTACGTTAACATTTATTTTTTGGTTTATAATTGTTCTTTGGGTT
64 TTTACAATAATTCTCACATTTTTACGTTAACATTTATTTATTGGTTTAGAATTATTCTTTGGGTT
* * * **
4410 TAAGGTAATAATTCTTTTACGTTGTTAATTTAATTATTAACGTTATAATAATATCTTTTTACACT
129 TAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCT
* * ** * * *
4475 TATTCTTATTTTTATTTTGTTTAGAATTATCACAA-TACTCTCTTAGGGGGTTATGATACTTCTA
194 TGTTCTTA-CTTTATTACGTTTAGAATTATCACAACT-CTCTCTTAGGGTGTTACGACACTTCTA
* *
4539 ACATATATTATATCAAATGATACTAATTTTACGATAATTCTCATATTTTTACGTTAACATTTATT
257 ACACATTTTATATCAAATGATAC-AATTTTACGATAATTCTCATATTTTTACGTTAACATTTATT
* * * *
4604 TATTAGTTTAGAAATATTCTTTGGGTTTAAGGTAATAATTCTTTTACATTGTCAATTTAATTATT
321 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTATTTTACATTGTCAATTTAATTATT
* * * *
4669 TACATTACAATAATATCTTTTTACGCTTGTTCTTTCCTTCATTATGTCTAAAAT
386 TACATTACAATAATATCTTTTTACGCTTGTT-TTTACTTCATTACGTTTAGAAT
* * **
4723 TATCACAACTCTCTCTTAGGGTGTTACAACATTTCTAACACA-TTTTATGTCAAATGATAATAAT
1 TATCACAACACTCTCTTAGAGTGTTACAACATTT-TAA-ACATTTTTATACCAAATGATAATAAT
*
4787 TTTACAATAATTCTCATATTTTTA
64 TTTACAATAATTCTCACATTTTTA
4811 TTTTAATAAA
Statistics
Matches: 836, Mismatches: 116, Indels: 37
0.85 0.12 0.04
Matches are distributed among these distances:
439 4 0.00
440 69 0.08
441 396 0.47
442 355 0.42
443 9 0.01
444 3 0.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (438 bp):
TATCACAACACTCTCTTAGAGTGTTACAACATTTTAAACATTTTTATACCAAATGATAATAATTT
TACAATAATTCTCACATTTTTACGTTAACATTTATTTATTGGTTTAGAATTATTCTTTGGGTTTA
AGGTAATAATTCTTTTACGTTGTCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCTTG
TTCTTACTTTATTACGTTTAGAATTATCACAACTCTCTCTTAGGGTGTTACGACACTTCTAACAC
ATTTTATATCAAATGATACAATTTTACGATAATTCTCATATTTTTACGTTAACATTTATTTATTG
GTTTATAATTATTCTTTGGGTTTAAGGTAATAATTATTTTACATTGTCAATTTAATTATTTACAT
TACAATAATATCTTTTTACGCTTGTTTTTACTTCATTACGTTTAGAAT
Found at i:4662 original size:662 final size:662
Alignment explanation
Indices: 3399--4810 Score: 1835
Period size: 662 Copynumber: 2.1 Consensus size: 662
3389 TTTTTTAGAG
* * * * *
3399 TATCACAA-TACTCTCTTAGAGTGTTACAATATTT-TAAACACATTTTATGCTAAATGATA-CTA
1 TATCACAACT-CTATCTTAGGGTGTTACAACATTTCT-AACACATTTTATTCTAAATGTTATC-A
* ** *
3461 ATTTTACAATAATTTTCACCTTTTTACATTAACATTTATTTATTGGTTTAGACATATTCTTTGGG
63 ATTTTACAATAATTCTCATATTTTTACATTAACATTTATTTATTGGTTTAGACATATTCTTTAGG
* * * **
3526 TTTAAGGTAATAATTTTTTTACGTTGTCAATTTAATTATTTATGTTACAATAATATTTTTTATGC
128 TTTAAAGTAATAATTATTTTACATTGTCAATTTAATTATTTACATTACAATAATATTTTTTATGC
* * * *
3591 TTGTTCTTATCTTTATTATCTTTAGAATTATAACTACTCTCTCTTAGGATATTACAACACTTCTA
193 TTATTCTTACCTTTATTATCTTTAGAATTATAACTAATCTCTCTTAGGATACTACAACACTTCTA
* *
3656 ACACATTTTATGTCAAATGATACCAATTTTACGATAATTCTCACATTTTTACATTGACATTTATT
258 ACACATTTTATATCAAATGATACCAATTTTACGATAATTCTCACATTTTTACATTAACATTTATT
*
3721 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTTTTTTACGTTGTCAATTTAATTATT
323 TATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATT
* * * * * *
3786 TATGTTTCAATAATATCTTTTTACACTTGTTTTTACTATCATTACGTTTAGAATTGTTACAACAC
388 AACGTTTCAATAATATCTTTTTACACTTATTCTTACTATCATTACGTTTAGAATTATCACAACAC
* * *
3851 TCTCTTAGGGTGTTACAACACTTTTAATACATTTTTATACCAAATGATAATAATTTTACAATAAT
453 TCTCTTAGGGGGTTACAACACTTCTAATACATTATTATACCAAATGATAATAATTTTACAATAAT
* * * *
3916 TCTCATATTTTTATGTTAACATTTATTTATTGGTTTAAATTATTCATTGGGCTTAGGGTAACAAT
518 TCTCATATTTTTACGTTAACATTTATTTATTAGTTTAAAATATTCATTGGGCTTAAGGTAACAAT
** * * * *
3981 TCTTTTATGTTATCAATTTAATTATTTACGTTATAATAATATTTTTTTATGCTTGTT-TTTACAT
583 TCTTTTACATTATCAATTTAATTATTTACATTACAATAATATCTTTTTACGCTTGTTCTTT-CAT
* * **
4045 TTATTACGTTTGGAAT
647 TCATTACGTCTAAAAT
** *
4061 TATCACAACTCTATCTTAGGGTGTTACGGCA-TTCTAACACATTTTATTCTGAATGTTATCAATT
1 TATCACAACTCTATCTTAGGGTGTTACAACATTTCTAACACATTTTATTCTAAATGTTATCAATT
* * *
4125 TTACGATAATTCTCATATTTTTACGTTAACATTTATTTATTGGTTTATA-ATTATTCTTTAGGTT
66 TTACAATAATTCTCATATTTTTACATTAACATTTATTTATTGGTTTAGACA-TATTCTTTAGGTT
* * *
4189 TAAAGTTATAATTATTTTATATTGTCAATTTAATTATTTGCATTACAATAATATCTTTTTATGCT
130 TAAAGTAATAATTATTTTACATTGTCAATTTAATTATTTACATTACAATAATAT-TTTTTATGCT
* * * * *
4254 TATTTTTACCTTTATTA-CGTTTAGAATTATCAC-AATACTCTCTTA-GAGTGCTACGACACTTT
194 TATTCTTACCTTTATTATC-TTTAGAATTATAACTAAT-CTCTCTTAGGA-TACTACAACACTTC
* * * *
4316 TAACATATTTTATATCAAATGATACTAATTTTACTATAATTCTCACATTTTTACGTTAACATTTA
256 TAACACATTTTATATCAAATGATACCAATTTTACGATAATTCTCACATTTTTACATTAACATTTA
* * *
4381 TTTTTTGGTTTATAATTGTTCTTTGGGTTTAAGGTAATAATTCTTTTACGTTGTTAATTTAATTA
321 TTTATTGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTCTTTTACGTTGTCAATTTAATTA
* * * **
4446 TTAACGTTAT-AATAATATCTTTTTACACTTATTCTTATTTTTATTTTGTTTAGAATTATCACAA
386 TTAACGTT-TCAATAATATCTTTTTACACTTATTCTTACTATCATTACGTTTAGAATTATCACAA
* ** * * * *
4510 TACTCTCTTAGGGGGTTATGATACTTCT-A-ACATATATTATATCAAATGATACTAATTTTACGA
450 CACTCTCTTAGGGGGTTACAACACTTCTAATACAT-TATTATACCAAATGATAATAATTTTACAA
* *
4573 TAATTCTCATATTTTTACGTTAACATTTATTTATTAGTTTAGAAATATTCTTTGGGTTTAAGGTA
514 TAATTCTCATATTTTTACGTTAACATTTATTTATTAGTTTA-AAATATTCATTGGGCTTAAGGTA
* *
4638 ATAATTCTTTTACATTGTCAATTTAATTATTTACATTACAATAATATCTTTTTACGCTTGTTCTT
578 ACAATTCTTTTACATTATCAATTTAATTATTTACATTACAATAATATCTTTTTACGCTTGTTCTT
* *
4703 TCCTTCATTATGTCTAAAAT
643 TCATTCATTACGTCTAAAAT
* *
4723 TATCACAACTCTCTCTTAGGGTGTTACAACATTTCTAACACATTTTATGTC-AAATGATAAT-AA
1 TATCACAACTCTATCTTAGGGTGTTACAACATTTCTAACACATTTTAT-TCTAAATG-TTATCAA
4786 TTTTACAATAATTCTCATATTTTTA
64 TTTTACAATAATTCTCATATTTTTA
4811 TTTTAATAAA
Statistics
Matches: 646, Mismatches: 89, Indels: 29
0.85 0.12 0.04
Matches are distributed among these distances:
660 5 0.01
661 197 0.30
662 388 0.60
663 51 0.08
664 5 0.01
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.48
Consensus pattern (662 bp):
TATCACAACTCTATCTTAGGGTGTTACAACATTTCTAACACATTTTATTCTAAATGTTATCAATT
TTACAATAATTCTCATATTTTTACATTAACATTTATTTATTGGTTTAGACATATTCTTTAGGTTT
AAAGTAATAATTATTTTACATTGTCAATTTAATTATTTACATTACAATAATATTTTTTATGCTTA
TTCTTACCTTTATTATCTTTAGAATTATAACTAATCTCTCTTAGGATACTACAACACTTCTAACA
CATTTTATATCAAATGATACCAATTTTACGATAATTCTCACATTTTTACATTAACATTTATTTAT
TGGTTTATAATTATTCTTTGGGTTTAAGGTAATAATTCTTTTACGTTGTCAATTTAATTATTAAC
GTTTCAATAATATCTTTTTACACTTATTCTTACTATCATTACGTTTAGAATTATCACAACACTCT
CTTAGGGGGTTACAACACTTCTAATACATTATTATACCAAATGATAATAATTTTACAATAATTCT
CATATTTTTACGTTAACATTTATTTATTAGTTTAAAATATTCATTGGGCTTAAGGTAACAATTCT
TTTACATTATCAATTTAATTATTTACATTACAATAATATCTTTTTACGCTTGTTCTTTCATTCAT
TACGTCTAAAAT
Found at i:6058 original size:20 final size:20
Alignment explanation
Indices: 6030--6072 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
6020 TCTAATGGAC
6030 TAAAAAAAATCAAAATTCAAAT
1 TAAAAAAAA--AAAATTCAAAT
*
6052 TAAAAAAAAAAAATTTAAAT
1 TAAAAAAAAAAAATTCAAAT
6072 T
1 T
6073 TTTACTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
22 9 0.45
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
TAAAAAAAAAAAATTCAAAT
Found at i:10018 original size:12 final size:13
Alignment explanation
Indices: 9977--10022 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
9967 GTGGTTAAAA
9977 ATATCTTAAATATT
1 ATAT-TTAAATATT
9991 ATATTATAAATATT
1 ATATT-TAAATATT
*
10005 ATATTT-ATTATT
1 ATATTTAAATATT
10017 ATATTT
1 ATATTT
10023 TCATACTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 11 0.37
13 2 0.07
14 17 0.57
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATTTAAATATT
Found at i:13763 original size:28 final size:28
Alignment explanation
Indices: 13731--13821 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 28
13721 ATTAAGTTTA
13731 AAATATTAA-TTTATTAA-ATTTAAATAT
1 AAATATTAATTTTATTAATA-TTAAATAT
* *
13758 CAAATACTAATTTTATTAATATTATATAT
1 -AAATATTAATTTTATTAATATTAAATAT
* * *
13787 AAATATAGAATTTAATTAATAATAAA-AT
1 AAATAT-TAATTTTATTAATATTAAATAT
*
13815 ATATATT
1 AAATATT
13822 TTTATATATA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
28 20 0.39
29 30 0.59
30 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (28 bp):
AAATATTAATTTTATTAATATTAAATAT
Found at i:13786 original size:29 final size:27
Alignment explanation
Indices: 13731--13791 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
13721 ATTAAGTTTA
*
13731 AAATATTAATTTATTAAATTTAAATAT
1 AAATACTAATTTATTAAATTTAAATAT
*
13758 CAAATACTAATTTTATT-AATATTATATAT
1 -AAATACTAA-TTTATTAAAT-TTAAATAT
13787 AAATA
1 AAATA
13792 TAGAATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
AAATACTAATTTATTAAATTTAAATAT
Found at i:14028 original size:30 final size:30
Alignment explanation
Indices: 13994--14053 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
13984 CATATTTTGT
13994 TACAAATTTTATTTAATTAAAAATAAAAAC
1 TACAAATTTTATTTAATTAAAAATAAAAAC
14024 TACAAATTTTATTTAATTAAAAATAAAAAC
1 TACAAATTTTATTTAATTAAAAATAAAAAC
14054 GGCAAACAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (30 bp):
TACAAATTTTATTTAATTAAAAATAAAAAC
Found at i:26591 original size:18 final size:17
Alignment explanation
Indices: 26565--26600 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
26555 TAAAAAATCT
26565 AAATATAATTATAATTAA
1 AAATATAATTA-AATTAA
*
26583 AAATGTAATTAAATTAA
1 AAATATAATTAAATTAA
26600 A
1 A
26601 TCAAGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
AAATATAATTAAATTAA
Found at i:26896 original size:19 final size:19
Alignment explanation
Indices: 26851--26898 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
26841 ATAATAATTT
26851 TTTAATTAAAAAATAAAAA
1 TTTAATTAAAAAATAAAAA
* *
26870 -ATATATTAAAATATAAAAA
1 TTTA-ATTAAAAAATAAAAA
26889 TTTAATTAAA
1 TTTAATTAAA
26899 TTCACAAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.08
19 20 0.83
20 2 0.08
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTAATTAAAAAATAAAAA
Found at i:31021 original size:12 final size:12
Alignment explanation
Indices: 31004--31037 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
30994 TATAATTTTT
31004 AAAGATATAATA
1 AAAGATATAATA
* *
31016 AGAGATACAATA
1 AAAGATATAATA
31028 AAAGATATAA
1 AAAGATATAA
31038 ATTCAATCTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (12 bp):
AAAGATATAATA
Found at i:33771 original size:17 final size:17
Alignment explanation
Indices: 33749--33782 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33739 TAAAGCAAGA
* *
33749 ATGGTATGAAATTATTT
1 ATGGTATAAAATAATTT
33766 ATGGTATAAAATAATTT
1 ATGGTATAAAATAATTT
33783 TTATTATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (17 bp):
ATGGTATAAAATAATTT
Found at i:35114 original size:23 final size:23
Alignment explanation
Indices: 35088--35133 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
35078 GTATAAAAAG
35088 GATAAAATT-ATAATTTATTAAAT
1 GATAAAATTGATAATTTA-TAAAT
* *
35111 GATAGAATTGATATTTTATAAAT
1 GATAAAATTGATAATTTATAAAT
35134 AGGTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (23 bp):
GATAAAATTGATAATTTATAAAT
Found at i:42424 original size:8 final size:8
Alignment explanation
Indices: 42408--42509 Score: 50
Period size: 8 Copynumber: 12.5 Consensus size: 8
42398 TTTTTAGATT
42408 TTTTGAAAA
1 TTTT-AAAA
42417 TTTTAAAA
1 TTTTAAAA
42425 TTTTAAAA
1 TTTTAAAA
* *
42433 TTTCATAA
1 TTTTAAAA
* *
42441 TTTCATAAG
1 TTTTA-AAA
*
42450 TTTTATAAT
1 TTTTA-AAA
42459 TTTTAAAA
1 TTTTAAAA
* *
42467 TATTTCATA
1 T-TTTAAAA
42476 TTCTTAAAAA
1 TT-TT-AAAA
*
42486 ATTTAAAA
1 TTTTAAAA
42494 ---TAAAA
1 TTTTAAAA
42499 -TTTAAAA
1 TTTTAAAA
42506 TTTT
1 TTTT
42510 CTTTTAATTC
Statistics
Matches: 74, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.07
7 5 0.07
8 34 0.46
9 27 0.36
10 3 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (8 bp):
TTTTAAAA
Found at i:43629 original size:18 final size:18
Alignment explanation
Indices: 43595--43629 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43585 TTTGACATAA
*
43595 AATAATTTAATATTTTTT
1 AATAATTTAATAATTTTT
*
43613 AATAATTTATTAATTTT
1 AATAATTTAATAATTTT
43630 ATAAGCATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AATAATTTAATAATTTTT
Found at i:44063 original size:17 final size:18
Alignment explanation
Indices: 44038--44071 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44028 TTATATATAA
44038 TAGAAATTTT-AAATTAT
1 TAGAAATTTTGAAATTAT
*
44055 TAGACATTTTGAAATTA
1 TAGAAATTTTGAAATTA
44072 ATAAGTAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (18 bp):
TAGAAATTTTGAAATTAT
Found at i:44330 original size:2 final size:2
Alignment explanation
Indices: 44323--44352 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
44313 GCGTGAAGTA
*
44323 AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44353 GAAAATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:46215 original size:60 final size:59
Alignment explanation
Indices: 46143--46688 Score: 546
Period size: 60 Copynumber: 9.2 Consensus size: 59
46133 AAACTCATGC
* * *
46143 TTTTA-TTT-AAGAAAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTCTTGAGAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT-TTGAAAA
*
46201 TTTTATTTTCAAGAAAAATTGATAC-TTCTAACTTTTCCTCAAAAATA-TTTTTTAAAAA
1 TTTTATTTTCAAGAAAAATTGATACTTTC-AACTTTTCCTCAAAAATATTTTTTTGAAAA
* * * * *
46259 TTTTATTTTCACAAGAAAAAGTGATACTTTTAACTTTTTCTTAAAAATGTTTTTCTTG-AAA
1 TTTTATTTT--CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTT-TTGAAAA
** **
46320 TCTTTATTTTTGAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATGCTTTTTT-AAAA
1 T-TTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAA
* * *
46379 TTTTATTTTCAAGAAAAATTGACATTTTTAACTTTTCCTCAAAAAATATTTTTTTG-AAA
1 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAA
* * *
46438 TCTTTATTTTCAAGAAATATTGATATTTTCAACCTTTCCTCAAAAAATATTTTTTTGAAAA
1 T-TTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAA
* * * *
46499 TTTTATTTTCAA-AGAAAATTAATATTTTCTACTTTTCCTCAAAAAGATTTTTTTGAAAA
1 TTTTATTTTCAAGA-AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAA
*
46558 CTTTTATTTTCAATG-AAAATTGATACTTTCAACTTTTACTCAAAAAAAATATTTTTTT---AA
1 -TTTTATTTTCAA-GAAAAATTGATACTTTCAACTTTTCCTC---AAAAATATTTTTTTGAAAA
* * * *
46618 TGTTTATGTTCAA-AAGAAATTAATACCTTT-AAC-TTTCCTTCAAAAATATATTTTTTTCAAAT
1 T-TTTATTTTCAAGAA-AAATTGATA-CTTTCAACTTTTCC-TC-AAAA-ATATTTTTTTGAAAA
46680 TTTTATTTT
1 TTTTATTTT
46689 AAAAAGATCA
Statistics
Matches: 415, Mismatches: 43, Indels: 57
0.81 0.08 0.11
Matches are distributed among these distances:
58 58 0.14
59 67 0.16
60 240 0.58
61 25 0.06
62 12 0.03
63 13 0.03
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.47
Consensus pattern (59 bp):
TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAA
Found at i:48305 original size:87 final size:86
Alignment explanation
Indices: 47878--48600 Score: 460
Period size: 86 Copynumber: 8.4 Consensus size: 86
47868 AAAATCAAAT
* * * * ** *
47878 AAAATAACTTGGA-TGAAACAGAAGTATAAAATGAAT-ACTTGGACTAAATCGAAGAAAGATTTG
1 AAAATGACTTGGATTG-AACCGAAGTCTAAAATGAATAACTTAGACTAAGCCAAAGAAAGATTTG
** *
47941 ACATAAGTTGAAATCCAAAAAC
65 ACATAAGTCAAAATTCAAAAAC
* * * * **
47963 AAAATGACTTGGATGGAACCGAAGTCTAAAATGAATACCTTGGACTAAGCTGAAA-AGGGATTTG
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAGC-CAAAGAAAGATTTG
* *
48027 ACATAAATCAAAA-TCTAAAAAT
65 ACATAAGTCAAAATTC-AAAAAC
* * * ** ** * *
48049 AAAATGACTTGGACTGAACTGAAGCCTAAAATGAATAA-TCTAGACTGGGTTGAAA-AAGGATAT
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACT-TAGACTAAG-CCAAAGAAAGATTT
* * * *
48112 GGCATAGGTCGAAA-TCTAAAAAT
64 GACATAAGTCAAAATTC-AAAAAC
* * * * * * * *
48135 AGAATGACTTGGATTGAACCAAAGTCTGAAATAAATAACTTAGACTGAGCTAAAGAGAGATTTGG
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCCAAAGAAAGATTTGA
* * * *
48200 CATAGGCCAAAATCCAAAAAT
66 CATAAGTCAAAATTCAAAAAC
* * *
48221 AAAATGA-TCTGGATTGAATCGAAGTCTGAAATGAAATAACTTAGACTAAGCCAAAGAAAAATTT
1 AAAATGACT-TGGATTGAACCGAAGTCTAAAATG-AATAACTTAGACTAAGCCAAAGAAAGATTT
48285 GACATAAGTCAAAATTCAAAAAC
64 GACATAAGTCAAAATTCAAAAAC
* * * * * *
48308 AAAATGACTTGAGACTGAACCGAAGTCTAAAATGAATAACTTGGACTAAACTAGAGAAAGATCTG
1 AAAATGACTTG-GATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCCAAAGAAAGATTTG
* * **
48373 ACATAATTTAAAATTTGAAAAC
65 ACATAAGTCAAAATTCAAAAAC
* * ** * * * * * *
48395 ATAATGACTTGTATTGAATTGAAGTTTGAAATGAATGACTTGGACTAAGCCAAAGAAAGATCTGG
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCCAAAGAAAGATTTGA
* * * * *
48460 TATATGCCAAAATCCAAAAAT
66 CATAAGTCAAAATTCAAAAAC
* * * * * * * * * * *
48481 AGAATGACTTAGATTGAACCAAAATCTAAAAAGAATTATTTGGACTGAGTCGAAA-AAAGATCTG
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAG-CCAAAGAAAGATTTG
* * * *
48545 GCATAGGCCAAAA-TAAAAAAC
65 ACATAAGTCAAAATTCAAAAAC
* * * * *
48566 GAAATGACCTAGATTGAATCAAAGTCT-AAATGAAT
1 AAAATGACTTGGATTGAACCGAAGTCTAAAATGAAT
48601 GATTTGGACT
Statistics
Matches: 505, Mismatches: 119, Indels: 29
0.77 0.18 0.04
Matches are distributed among these distances:
84 7 0.01
85 63 0.12
86 301 0.60
87 114 0.23
88 20 0.04
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (86 bp):
AAAATGACTTGGATTGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCCAAAGAAAGATTTGA
CATAAGTCAAAATTCAAAAAC
Found at i:48471 original size:260 final size:258
Alignment explanation
Indices: 47951--48516 Score: 584
Period size: 260 Copynumber: 2.2 Consensus size: 258
47941 ACATAAGTTG
* * * *
47951 AAATCCAAAAACAAAATGACTTGGATGGAACCGAAGTCTAAAATGAATACCTTGGACTAAGCTGA
1 AAATCCAAAAATAAAATGACTTGGATGGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCTCA
*** * *
48016 AAAGGGATTTGACATAAATCAAAATCTAAAAATAAAATGACTTGGACTGAACTGAAGCCTAAAAT
66 AAAAAAATTTGACATAAATCAAAATCTAAAAACAAAATGACTTGGACTGAACCGAAGCCTAAAAT
*** * * * * *
48081 GAATAATCTAGACTGGGTTGAAAAAGGATATGGCATAGGTCGAAATCTAAAAATAGAATGACTTG
131 GAATAATCTAGACTAACTAGAAAAAGGATATGACATAAGTCAAAATCTAAAAACAGAATGACTTG
* * * *
48146 GATTGAACCAAAGTCTGAAATAAATAACTTAGACTGAGCTAAAGAGAGATTTGGCATAGGCCA
196 GATTGAACCAAAGTCTGAAATAAATAACTTAGACTAAGCCAAAGAAAGATCTGGCATAGGCCA
* * *
48209 AAATCCAAAAATAAAATGA-TCTGGATTGAATCGAAGTCTGAAATGAAATAACTTAGACTAAGC-
1 AAATCCAAAAATAAAATGACT-TGGATGGAACCGAAGTCTAAAATG-AATAACTTAGACTAAGCT
* *
48272 CAAAGAAAAATTTGACATAAGTCAAAAT-TCAAAAACAAAATGACTTGAGACTGAACCGAAGTCT
64 CAAA-AAAAATTTGACATAAATCAAAATCT-AAAAACAAAATGACTTG-GACTGAACCGAAGCCT
* * * * * * * *
48336 AAAATGAATAA-CTTGGACTAAACTAGAGAAA-GATCTGACATAATTTAAAATTTGAAAACATAA
126 AAAATGAATAATC-TAGACT-AACTAGAAAAAGGATATGACATAAGTCAAAATCTAAAAACAGAA
* *** * * * * *
48399 TGACTTGTATTGAATTGAAGTTTGAAATGAATGACTTGGACTAAGCCAAAGAAAGATCTGGTATA
189 TGACTTGGATTGAACCAAAGTCTGAAATAAATAACTTAGACTAAGCCAAAGAAAGATCTGGCATA
*
48464 TGCCA
254 GGCCA
* * * * * *
48469 AAATCCAAAAATAGAATGACTTAGATTGAACCAAAATCTAAAAAGAAT
1 AAATCCAAAAATAAAATGACTTGGATGGAACCGAAGTCTAAAATGAAT
48517 TATTTGGACT
Statistics
Matches: 249, Mismatches: 51, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
257 1 0.00
258 43 0.17
259 54 0.22
260 144 0.58
261 7 0.03
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (258 bp):
AAATCCAAAAATAAAATGACTTGGATGGAACCGAAGTCTAAAATGAATAACTTAGACTAAGCTCA
AAAAAAATTTGACATAAATCAAAATCTAAAAACAAAATGACTTGGACTGAACCGAAGCCTAAAAT
GAATAATCTAGACTAACTAGAAAAAGGATATGACATAAGTCAAAATCTAAAAACAGAATGACTTG
GATTGAACCAAAGTCTGAAATAAATAACTTAGACTAAGCCAAAGAAAGATCTGGCATAGGCCA
Found at i:56957 original size:15 final size:15
Alignment explanation
Indices: 56933--56967 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
56923 TTATTTTGTT
*
56933 AAATGTAATGAATGA
1 AAATGCAATGAATGA
*
56948 GAATGCAATGAATGA
1 AAATGCAATGAATGA
56963 AAATG
1 AAATG
56968 ATTGCACGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (15 bp):
AAATGCAATGAATGA
Found at i:60249 original size:60 final size:59
Alignment explanation
Indices: 60185--60727 Score: 507
Period size: 59 Copynumber: 9.1 Consensus size: 59
60175 CATGCTTTTA
** *
60185 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGCTTTTCTTAAGAATTTTATT
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTTTAA-AATTTTATT
* * * * * *
60245 TTCAAGGAAAATTGGTAC-TTCTAATTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
1 TTCAAGAAAAATTGATACTTTC-AACTTTTCCTTAAAAATAATTTTTTTAAAATTTTATT
* *
60304 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT-GTTTTTCTTGAAATCTTTATT
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTT-TTAAAAT-TTTATT
* * * * *
60364 GTT-GAGAAAAATTGATATTTTCAACTTTTCCTCAAAAATACTTTTTTGAAAATTTTATT
1 -TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTTTAAAATTTTATT
* ** * * *
60423 TTCAAGGAAAATTGGCACTTTCCAACTTTTTCTCAAAAA-ATATTTTTTTGAAATCTTTATT
1 TTCAAGAAAAATTGATACTTT-CAACTTTTCCTTAAAAATA-ATTTTTTTAAAAT-TTTATT
*
60484 TTCAAGAAAAATTGATACTTGCAACCTTTT-CTTAAAAAT-ATTTTTTTGAAAATTTTATT
1 TTCAAGAAAAATTGATACTTTCAA-CTTTTCCTTAAAAATAATTTTTTT-AAAATTTTATT
* * * * * * *
60543 TTCAAGAAAAATTAATATTTTTAACTTTTTCTCAAAAATATTTTTTTGTAAATTTTTA-T
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTT-TAAAATTTTATT
* * * * *
60602 TTCAATG-AAAATTGATACTTTCAACTTTTCTTTAAATATATATATTTTT-AATTTTTATG
1 TTCAA-GAAAAATTGATACTTTCAACTTTTCCTTAAAAATA-ATTTTTTTAAAATTTTATT
* *
60661 TTCAA-AGGAAATTGATACCTTCAACTTTT-CTTCAAAAAT-ATATTTTTTAAAATTTTTATT
1 TTCAAGA-AAAATTGATACTTTCAACTTTTCCTT-AAAAATAAT-TTTTTTAAAA-TTTTATT
*
60721 TTAAAGA
1 TTCAAGA
60728 GATCATTGAA
Statistics
Matches: 394, Mismatches: 63, Indels: 51
0.78 0.12 0.10
Matches are distributed among these distances:
57 2 0.01
58 27 0.07
59 174 0.44
60 154 0.39
61 37 0.09
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (59 bp):
TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATAATTTTTTTAAAATTTTATT
Found at i:60315 original size:119 final size:119
Alignment explanation
Indices: 60185--60727 Score: 522
Period size: 119 Copynumber: 4.6 Consensus size: 119
60175 CATGCTTTTA
*
60185 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGCTTTTCTTAAGAAT-TTTATTTTCA
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTAA-AATCTTTATTTTCA
* * *
60249 AGGAAAATTGGTACTTCTAATTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
65 AGAAAAATTGATACTTCTAACTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
* *
60304 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTGAAATCTTTATTGTT-G
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTAAAATCTTTATT-TTCA
* * *
60368 AGAAAAATTGATA-TTTTCAACTTTTCCTCAAAAATACTTTTTTGAAAATTTTATT
65 AGAAAAATTGATACTTCT-AACTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
* ** * * * *
60423 TTCAAGGAAAATTGGCACTTTCCAACTTTTTCTCAAAAAATATTTTT-TTGAAATCTTTATTTTC
1 TTCAAGAAAAATTGATACTTT-CAACTTTTCCT-TAAAAATGTTTTTCTTAAAATCTTTATTTTC
* * *
60487 AAGAAAAATTGATACTTGC-AACCTTTTCTTAAAAATATTTTTTTGAAAATTTTATT
64 AAGAAAAATTGATACTT-CTAACTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
* * * * * * * *
60543 TTCAAGAAAAATTAATATTTTTAACTTTTTCTCAAAAATATTTTT-TTGTAAATTTTTA-TTTCA
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTT-AAAATCTTTATTTTCA
* * * *
60606 ATG-AAAATTGATACTT-TCAAC-TTTTCTTTAAATATATATATTTTT--AATTTTTATG
65 A-GAAAAATTGATACTTCT-AACTTTTTC-TCAAAAATA-AT-TTTTTGAAAATTTTATT
* * * *
60661 TTCAA-AGGAAATTGATACCTTCAACTTTT-CTTCAAAAATATATTTT-TTAAAATTTTTATTTT
1 TTCAAGA-AAAATTGATACTTTCAACTTTTCCTT-AAAAATGT-TTTTCTTAAAATCTTTATTTT
*
60723 AAAGA
63 CAAGA
60728 GATCATTGAA
Statistics
Matches: 362, Mismatches: 42, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
117 8 0.02
118 98 0.27
119 150 0.41
120 93 0.26
121 13 0.04
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.47
Consensus pattern (119 bp):
TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATGTTTTTCTTAAAATCTTTATTTTCAA
GAAAAATTGATACTTCTAACTTTTTCTCAAAAATAATTTTTTGAAAATTTTATT
Found at i:63429 original size:9 final size:11
Alignment explanation
Indices: 63389--63430 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
63379 CTATTTTAAT
*
63389 ATATTAAAAATC
1 ATATT-AAAATA
63401 ATATTAAAATA
1 ATATTAAAATA
63412 ATATTAAAA-A
1 ATATTAAAATA
63422 AT-TTAAAAT
1 ATATTAAAAT
63431 TTAAAATCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 6 0.21
10 3 0.11
11 14 0.50
12 5 0.18
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
ATATTAAAATA
Done.