Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168229.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26063
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Found at i:808 original size:26 final size:26
Alignment explanation
Indices: 779--831 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
769 TCGGTCTGAT
779 CTTACACTGGGAATGAAC-TCTGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
805 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
831 C
1 C
832 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:1591 original size:11 final size:11
Alignment explanation
Indices: 1575--1603 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1565 GAAGTTCTCC
1575 GGCGATGCTCT
1 GGCGATGCTCT
1586 GGCGATGCTCT
1 GGCGATGCTCT
1597 GGCGATG
1 GGCGATG
1604 GTGCCCCGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.24, G:0.41, T:0.24
Consensus pattern (11 bp):
GGCGATGCTCT
Found at i:2495 original size:11 final size:11
Alignment explanation
Indices: 2479--2511 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
2469 CAGTCAGGTT
2479 CTCCAGCGATG
1 CTCCAGCGATG
2490 CTCCAGCGATG
1 CTCCAGCGATG
2501 CTCCAGCGATG
1 CTCCAGCGATG
2512 GTGCCTCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCAGCGATG
Found at i:2529 original size:906 final size:900
Alignment explanation
Indices: 1--7979 Score: 9537
Period size: 906 Copynumber: 8.9 Consensus size: 900
* * * ** **
1 GGATGCACAAGCCGAGGATC-AGTCGGGTCCCCCT-CTGGGTGCTGTCGATCCTACTGTCGTAAC
1 GGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTAC---GTGCTGTCGATCCTGCTACCACAAC
* * * * *
64 CCTC-GATCTGATCTAATCTTAGACTGAGAAGGAACTCCGTATGCCTAAGCCTACCGATGAAACG
62 CCTCAG-TCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
128 AGCGGGTC-GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
126 AGCGGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
192 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCTTGTAAA
190 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
** *
257 TTCATACAATGGTTTCTTAAGCCTTCATGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTT
255 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
322 TCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGC
320 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-
**
387 CCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAATTAAAAAC
384 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
451 TCAAAGTGTACAGGATTTTGTGACCATTTGACAAAAGTGTCCCTATTTCAGATACTTTAATGGCT
449 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
516 ACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATG
514 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
581 AGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGTACATCATTTGCGCACA-CCC
579 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * *
645 CCGTCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAAGTTCT-C-CGA---C--GA-------
644 CCGCCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCGCGATGTCAGGATGCTCCG
* * * * * **
696 C---GGTGCCCCGGGCGAAAAAAAATGCGGTACCAGCAAATGCACTTGCCTAGCATGTGCACCCG
709 CGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCG
* * *
758 CATCCTTCGATTCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
774 CAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAAC
* * * * **
823 TTCGTATGCCTAAGTCAAACCACGAAA-TAAGCGTGCGGGCGCTTAGCTTGCCAGAGGGGCA
839 TCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
* * * *
884 GGATGCACAAGCCGGGGATCGACCGGGTCCACCCCTACGTGCTGTTGATCCTGCTACTACAACCC
1 GGATGCGCAAGCCGGGGATCGATCGGGT-C-CCCCTACGTGCTGTCGATCCTGCTACCACAACCC
* *** * *
949 TCAGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC
64 TCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
1014 AGGCGTGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCCTGGATCGATAGGGTGGTA
129 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
**
1079 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTTATTTTTATGGCTTGTAAATTCA
194 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
1144 TAAAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
259 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
1209 GATTTTTAAAACTTTTTATGGTACGGGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCAA
324 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC-A
* * *
1274 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAGATTCAGCTAAAAACTCGA
388 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * * * *
1339 AGTGTACAAGATTTTGTGATCGTTTG-AAAAACTGTCCCCGTTTCAGACACTTTAATGCCTACTA
453 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
1403 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGGTTTGATGAGG
518 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGG
* * * * * **
1468 GATAGGGGGCCAATATACGGGCCAAGTGCCAGCACCCATTGCACATCAAGTGTGCAC-CCCCCAT
582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * *
1532 CCCCCCAATCGTCGGAAGCCCAATGCCACCAGTGAAGTTCTCCGGCGATGCTCTGGCGATGCTCT
647 CCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCC-GCGATG-TC-AG-GATGCTC-
* * * * *
1597 GGCGATGGTGCCCCGGGCAAAAAAAAAATGTGGCACCAGCAAATGCCCAAGCCTAGCATGTACGC
707 CGCGATGGTGCCCCGGGC-AAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCAC
* ** * *
1662 CCGCAACCTTCGATCCCATCTGATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
771 CCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
* * * *
1727 AACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAACCAACCAAAGGGGTA
836 AACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
* *
1791 GGATGCGCAAGCCGGGCATCGGTCGGGTCCCCCGTACGTGCTGTCGATCCTGCTACCGA-AACCC
1 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCC-TACGTGCTGTCGATCCTGCTACC-ACAACCC
* * * * *
1855 TCAATCTGATCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAGCCGACGAAATGAGC
64 TCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
1920 GGACGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
129 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
1985 TGTGAGTTTAGGCACATCTTTATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
194 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
2050 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAC
259 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
2115 GATTTTTGAAACTTTTTACTGTTTGGGATTTTTTAAAAATTTTTTCAGAAGGATTTTTGGCAGCA
324 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC-CCA
*
2180 AACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGA
388 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
2244 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
453 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
2309 GCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
518 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
**
2374 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCTAG
583 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
*
2439 CCCCCCTAATCGCCGGAACCCCAATGCCACCAGTCAGGTTCTCCAGCGATGCTCCAGCGATGCTC
647 CCCCCC-AATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCC-GCGATG-T-CAG-GATGCTC
* * ** ** * * *
2504 CAGCGATGGTGCCTCGGGCAAAAAAAAAATATGATACCAGCACATGTGCGACCCCAGTATGTGCA
707 C-GCGATGGTGCCCCGGGC-AAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCA
* * * * * *
2569 -CCGCAACCCTCTG-TTCGGTCTGATTTTACACTGTGAATAAAGTCCGTATGCTTAGACTGGGAA
770 CCCGCAACCCTC-GATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
* ** * * ** * *
2632 TAAACTCTATTTGCCTAAGTCAACCCATGAAAC-AAGCGTGTAGGCACTCAGCCAGCCAGGGGGG
834 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGG
2696 CA
899 CA
* * * * * ** * * * ***
2698 GGACGCACAATCCGGGGATCGGTTGATTACTCCCTGCGTGCTATCGATCCTGCTACTGTAACCCT
1 GGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
* * * *
2763 CGGTC-CAGTCCAATATTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAACGAGC
65 CAGTCTGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * * * *
2826 GGGCGGGTGGGCACTACGCTGGCCAAAAAGGCGGGATTCGCAAGTCGTGGATCGATAGGGTGGTA
129 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
2891 GGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
194 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
2956 TACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACCCATTTTCTATTTTTCAT
259 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
3021 GATTTTTGAAACTTTTTACAGTTCGAGATTTGTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
324 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCA
* * ** * *
3086 AACTTGGTAGACTTGATCGTTGTATTTTTGTTCACATGTACAAAACAATTCAGCTAAAAACTCGA
388 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * * *
3151 AGTGTATAGGATTTTGTGAGCATTTGAAATAAGTGTCCCCATTTTAGACACTTTAATGCCTACTG
453 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
3216 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
518 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * *
3281 ATAGGGGGCCAATATAAGGGCTAAGTACTAGCACCCATCGGAAATCATGTACGCACACCCCCCCC
583 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA----CCCC
* * * * *
3346 CCGCCCCCCAATTGTTGAAACCCCAATGCCATCAGTCCGGTTCTCCGACGA--T--GG-TGC-CC
644 CCGCCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCG-CGATGTCAGGATGCTCC
*
3405 -C-A------CAC--G-AAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC
708 GCGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC
* * * *
3459 GCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAATTCCGCATGCTTAGACTGGGAATGAA
773 GCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
** *
3524 CTCTATATGCCTAAGTCAACCCACGAAAC-AAGCGTGGGGGCGCTCAGCC-GACCAGAGGGGCA
838 CTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCA
* * * *
3586 GGATGCGCAAGCCAGGGATCGACCGGGTCCCCCT-CGGTGTGCTGTCGATCTTACTACCACAACC
1 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTAC---GTGCTGTCGATCCTGCTACCACAACC
** * * *
3650 CTCTCTCTGATCCAATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAGGAG
63 CTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * * *
3715 CGGGCGGGTGGGCACTGCACCGACCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGT
128 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
3780 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATACCAATGCCATTTTTATGGCTTGTAAATTC
193 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
3845 ATACAATGGTCCCTTCAGCCTTCATGTTAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
258 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** * *
3910 TGATTTTTGAAACTTTGTACGGCTCTAGATTTTTTTAAAATTTTTTTAGAAGGAATTTTGGCCCC
323 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCC
* * * * * * *
3975 AAAATTGGTAAATGTGATCCTTTTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCA
387 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
4040 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACT
452 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
4105 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGG
517 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
4170 GATA-GGGGCCAATATAAAGGCCAAGTGCCAGCACCCATAGCACATCATGTGCGCACGCACCCCC
582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--CACCCCC
* * ** * * * * *
4234 CGCCCCCCCAATCGTTGGAACCTCAATGCCGTCGGTCAAGTT-T--TC--TG--ACGATGCTTCG
645 CG-CCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCGCGATGTCAGGATGCTCCG
** *
4292 ACGATGGTGCCCCGGGC-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
709 -CGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC
*
4356 GCAA-CC-C--T-C-G---G----T-C-C-----A-G---TCTG-AT-CTTACACTGGGAATGAA
773 GCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
* * * * *
4395 CTCCGTATGCCTAAGTCAACCCATGAAACG-AGCGTCCAGGCGTTCAGCC-GACTAGAGGGGCA
838 CTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCA
* * ** * * * ** **
4457 AGATGCAG-AGGTTGGGGATCGGTCGGGTCCCCCCCTACGTGCTGCCAATATTGCTACCGTAACC
1 GGATGC-GCAAGCCGGGGATCGATCGGGT--CCCCCTACGTGCTGTCGATCCTGCTACCACAACC
* * * * *
4521 CTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAACGAG
63 CTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * *
4586 CGGGCGAGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGT
128 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
4651 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTC
193 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
4715 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCA
258 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
4780 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAACTTTTTTCAGAAGGAGTTTTGGCCCT
323 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC-
* * *
4845 AAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCG
387 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * **
4910 TAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAAAAGCTACT
452 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
4975 GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
517 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
5040 GATAGGGGGCTAATATAGGGGCCAAGTACCAGCACCCATCTCACATCATGTGGGCACACCCCTCT
582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C-
* * * *
5105 CAGCCCCCCCAATCATCGGAACCCCAATGCCACCGGTCAGGTTCT--TCG--G-CA--ATGCTTT
645 C-G-CCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCGCGATGTCAGGATGC-TC
* * ** ** *
5163 GGCGATGGTGCCTCGGGCAAAAGAAAAATAAGATACCAGGACATGCCCGAGCCTAGCATGTGCAC
707 CGCGATGGTGCCCCGGGCAAAA-AAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCAC
* * * * * * * *
5228 CCGCAACCCTCAATTCAGTCTAAT-TTGACACTGTGTATAAACTCTGTATACTTAGACTGGGAAT
771 CCGCAACCCTCGATCCGGTCTGATCTT-ACACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * * *
5292 GAACTCTGTATGCCTAAGTCAACACATGAAAC-AAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGT
835 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGC
*
5356 G
900 A
* ** * * ** * * * * *
5357 GGACGCATAATCCGGGGATCGGTCGCTTACCCCCTATGTGCTATCGATCTTGCTACCATAACTCT
1 GGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
* * *
5422 TAGT-TCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC
65 CAGTCTGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * ** * * *
5486 GGACGGGCGGGCACTTCGTTGGCCAGAAAGGTGGGATTCGCAAGCCGTGGATCGATAGGGTGGTA
129 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
5551 GGTGTGTTTAGGCACATCTTCATATTTCTGCGACGCCAATGCCATTTTTATGGCTTGTAAATTCA
194 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
5616 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT
259 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * *
5681 GATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTTAGAAGGAGTTTTGGCCCTA
324 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC-A
** * * *
5746 AACTTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAACAATTCAGATAAAAACTCAA
388 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
5811 AGTGTACAGGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
453 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
5875 GCAACAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
518 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
5940 ATAAGGGGCCAATATATGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
583 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-
* ** ** * *
6005 CCCCCCAATCGCCAAAACCCCAATGCCGTCTGTCAGGTTCTCCAACGA---C-GG-TGC-CC-C-
647 CCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCC-GCGATGTCAGGATGCTCCGCG
* *
6062 A--G-G---C--GAAAAAAAAAATGTGGCACCAGCTCATGCCCGAGCCTAGCATGTGCACCCGCA
711 ATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCA
* *
6119 ACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTC
776 ACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * * *
6184 CGTATGCCTAAGTCAACCCACGAAATG-AGCGTGCGGGCGCTCAACCGGCCAGATGGGCA
841 CGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
* * * * * * * *
6243 GGATGCGTAAGCCGAGGATCGATAGGGTTCCCCCTGCATGCTTTCGATCCTACTACCACAATCCT
1 GGATGCGCAAGCCGGGGATCGATCGGG-TCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
* ** * *
6308 CTA-TC-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGATGAAACGAG
65 C-AGTCTGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * **
6371 CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGGT
128 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
6436 AGGTGGGTTTAGGCACATCTTCGTATTTCTGCAATGCCAATGCCATTTTTATGGCTTGTAAATTC
193 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
6501 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
258 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
6566 AGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGATTTTTGGCATC
323 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC-CC
* *
6631 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
387 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
6696 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACT
452 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* ** *
6761 GACAATAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGG
517 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
6826 GATAAGGGGCCAATATAAGGGCCAAGTACCA-CAACCCATCGCACATCATGTGC-CACACCCCCC
582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCACATCATGTGCGCACACCCCCC
* * *
6889 G-CCCCCAATCATCGGAACCCCAATGCCATCAGTCCGGTTCTCCGACGATGTTCA-G--G-T---
646 GCCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCG-CGATG-TCAGGATGCTCCG
* * * ** * * * *
6946 -GATGGTG-CCTGGACGAAAAGAAAATGCAGCACCAGCACATTCTCGAGCCAAACATGTGCACCC
709 CGATGGTGCCCCGGGC-AAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC
** * *
7009 ATAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
773 GCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAA
* * * * ** * *
7074 CTCCGTATGCCTAAGACAACCCACAAAACG-AGTGTACGGGTACTCAACC-GCGCAGAGGGCCA
838 CTCCGTATGCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGC-CAGAGGGGCA
* * * *
7136 GGATGCGCAAGCCGGGGATTGATCGGTTCCCCTCGTACGTGCTGCCGATCCTACTACCACAACCC
1 GGATGCGCAAGCCGGGGATCGATCGGGTCCCC-C-TACGTGCTGTCGATCCTGCTACCACAACCC
* * * ** * * * * *
7201 TCGGTCCGGTCTTATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGATGCAACAAGC
64 TCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
7266 GGGCGGGCGGGCACTACGCCGGCCAAAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTAGTA
129 GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
7331 GGTGGTTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
194 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
7396 TACAATGGTCCCGTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAT
259 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* ** *
7461 GATTTTTTAAACTTTTTACGGTTTAGGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGTTCCCA
324 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG-GCCCA
* * *
7525 AACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGGTT-AGCTAAAAACTCG
388 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCG
* * *
7589 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTAAGACACTTTAACGGCTACT
452 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
7654 GGCAGCAAACTTGTAAAATTTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGG
517 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
7719 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCC
582 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCC
* * * * * * ***
7784 TCACCACCCCAATTGCCGAAAACTCAATGCTGTC-GATCAGGTTCT-C-CGA--T---GATGCTC
645 -CGCC-CCCCAATCGTCGGAACCCCAATGCCACCAG-TCAGGTTCTCCGCGATGTCAGGATGCTC
*** * * * *
7841 CGACGATGGTGCTTTGGACAAAAAAAAA-GTGGCACCGGCACCA-G--TGAGCCCAGCATGTGCA
707 CG-CGATGGTGCCCCGGGCAAAAAAAAATGTGGCACCAGCA-CATGCCCGAGCCTAGCATGTGCA
** ** * * *
7902 CCCGCAACCCTCGATCCAATCCAATCTTACACTGGAAATGAACTCTGCATGCTTAGACTAGGAAT
770 CCCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
*
7967 GAATTCCGTATGC
835 GAACTCCGTATGC
7980 TTAGACTAGG
Statistics
Matches: 6142, Mismatches: 770, Indels: 355
0.85 0.11 0.05
Matches are distributed among these distances:
869 9 0.00
870 315 0.05
871 310 0.05
872 57 0.01
873 19 0.00
874 43 0.01
875 2 0.00
876 2 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
882 5 0.00
883 445 0.07
884 197 0.03
885 10 0.00
886 566 0.09
887 226 0.04
888 169 0.03
889 115 0.02
890 422 0.07
891 7 0.00
892 9 0.00
893 425 0.07
894 300 0.05
895 8 0.00
896 125 0.02
897 52 0.01
898 18 0.00
899 401 0.07
900 302 0.05
901 4 0.00
902 1 0.00
903 2 0.00
905 125 0.02
906 710 0.12
907 583 0.09
908 108 0.02
909 35 0.01
910 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (900 bp):
GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTC
AGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCAAAC
TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC
CCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTCCGCGATGTCAGGATGCTCCGCGATGGT
GCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCT
CGATCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCA
Found at i:6189 original size:26 final size:26
Alignment explanation
Indices: 6138--6190 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6128 CCGGTCCGAT
*
6138 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
6164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
6190 C
1 C
6191 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:7060 original size:26 final size:26
Alignment explanation
Indices: 7031--7083 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7021 CTGGTCTGAT
*
7031 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
7057 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
7083 C
1 C
7084 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:7967 original size:26 final size:26
Alignment explanation
Indices: 7938--7995 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
7928 TTACACTGGA
*
7938 AATGAACTCTGCATGCTTAGACTAGG
1 AATGAACTCCGCATGCTTAGACTAGG
* *
7964 AATGAATTCCGTATGCTTAGACTAGG
1 AATGAACTCCGCATGCTTAGACTAGG
7990 AATGAA
1 AATGAA
7996 TTCCATATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (26 bp):
AATGAACTCCGCATGCTTAGACTAGG
Found at i:7996 original size:26 final size:26
Alignment explanation
Indices: 7950--8005 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7940 TGAACTCTGC
*
7950 ATGCTTAGACTAGGAATGAATTCCGT
1 ATGCTTAGACTAGGAATGAATTCCAT
7976 ATGCTTAGACTAGGAATGAATTCCAT
1 ATGCTTAGACTAGGAATGAATTCCAT
8002 ATGC
1 ATGC
8006 CTATGCCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (26 bp):
ATGCTTAGACTAGGAATGAATTCCAT
Found at i:8043 original size:34 final size:34
Alignment explanation
Indices: 8003--8069 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
7993 GAATTCCATA
*
8003 TGCCTATGCCAACCGACGAAATGAGCGGGTGGGT
1 TGCCTATGCCAACCGACGAAACGAGCGGGTGGGT
8037 TGCCTATGCCAACCGACGAAACGAGCGGGTGGG
1 TGCCTATGCCAACCGACGAAACGAGCGGGTGGG
8070 CGGGCACTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.25, G:0.36, T:0.15
Consensus pattern (34 bp):
TGCCTATGCCAACCGACGAAACGAGCGGGTGGGT
Found at i:8736 original size:26 final size:26
Alignment explanation
Indices: 8707--8759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8697 CCGGTCCAAT
8707 CTTACACTGGAAATGAACTCCATATG
1 CTTACACTGGAAATGAACTCCATATG
* * *
8733 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCATATG
8759 C
1 C
8760 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCATATG
Found at i:10095 original size:895 final size:882
Alignment explanation
Indices: 8037--10567 Score: 3628
Period size: 895 Copynumber: 2.9 Consensus size: 882
8027 GCGGGTGGGT
* *
8037 TGCCTATGCCAACCGACGAAACGAGCGGGTGGGCGGGCACTACGCCGGTCAGAGAGGCAGGATGC
1 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCAGGATGC
* * **
8102 ACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAA
66 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
8167 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
131 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* ** *
8232 CAGACGAC-TCATTTT-TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAT
196 AAGACGACTTGTTTTTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAT
* *
8295 TTTTTCAGAGGGAG-TTTTGCTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGC
261 TTTTTCAGAAGGAGTTTTTGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGG-TGC
*
8359 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAATAAAGTGTCCC
324 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
8424 CATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
389 GATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
* *
8489 TGTTAGTCTTCAAGGTTTGATGAGGGATAGGGGGCCAATG-TAAGGGCCAAGTACCAGCACCCAT
454 TGTGATTC-TCAAGGTTTGATGAGGGATAGGGGGCCAA-GATAAGGGCCAAGTACCAGCACCCAT
* * * *
8553 CGCACATCATGTGCGCACA-CCCCC-TCCCCCAATTGCCAGAACCCCAATGCCGCCGGTTAGGTT
517 CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
8616 CTCCGATGATGGTGC---CCTAGGCGAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAACATG
582 CTCCGATGATGGTGCTGGGCTTGGCGAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATG
* * *
8678 TGCACCCGCAACCCTCGGTCCGGTCCAATCTTACACTGGAAATGAACTCCATATGCTTAGACTGG
647 TGCACCCGCAACCCTCGGTCTGGTCTAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGG
* ** * ** **
8743 GAATGAACTCCGTATGCCTAAGTCAATCCATGAAACGAGCGTAAGGGCGCTCAGTCGGCCAGAGG
712 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCCAATCAACCGGCCAGAGG
8808 GGCAGGATGCACAAGGCGGGGATCGGCCGGGTCCCCCCTACATACTGTCGATCTTGCTACCACAA
777 GGCAGGATGCACAAGGCGGGGATCGGCCGGGTCCCCCCTACATACTGTCGATCTTGCTACCACAA
* * * **
8873 CCCTCGATCTGATTTGATCTTCGTGAGGAATGAACTTCATA
842 CCCTCGATCTGATCTGATATTAGTGAGGAATGAACACCATA
* * * *** * **
8914 TGCTTAAGCCAACCGACGAAACGAGCGGACGGGCAGGCACTACGTAAGCCAGAGAGGCAAAATGC
1 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCAGGATGC
8979 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
66 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
9044 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
131 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * **
9109 AAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTTTAA
196 AAGACGACTTGTTTT-TATTTTTCACT-ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
9173 ATCTCTTT-AGAAGGA-TTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGTG
259 AT-TTTTTCAGAAGGAGTTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-G
*
9236 TGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
321 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
* *
9301 CCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAGATCTCAAATGCTCTTTAAGG
386 CCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG
*
9366 GGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCC
451 GGGTGTGA-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCC
* *
9431 ATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAGTCGCCGGAACCCCAATGCCACCGGTCAG
515 ATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAG
9496 GTTCTCCGATGATGGTTCGACGATGGTGCTTTGGCCGAAAAAAATGTGGCACCAGCACATGCCTG
579 GTTCTCCGATGATGG-T-G-C--TGG-GC-TTGG-CGAAAAAAATGTGGCACCAGCACATGCCTG
* ** *
9561 AGCCCAGGATGTGCACCTACAACCCTCGGTCTGGTCTAATCTTAAACTGGGAATGAACTCCATAT
636 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCTAATCTTACACTGGGAATGAACTCCATAT
* *
9626 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCCAATCAA
701 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCCAATCAA
* ** * * * *
9691 CCGGCCAGGGGGGCAGGATGTGCAAGTCGGGGATCGGCCGGGTCCCCCCTGCGTGCTG-CTGATC
766 CCGGCCAGAGGGGCAGGATGCACAAGGCGGGGATCGGCCGGGTCCCCCCTACATACTGTC-GATC
* *
9755 TTGCTACCACAATCCTC-AGTCTGATCTGATATTAGACT-AGGAATGAACACCGTA
830 TTGCTACCACAACCCTCGA-TCTGATCTGATATTAG--TGAGGAATGAACACCATA
* * *
9809 TGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAAGCGGGATGC
1 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCAGGATGC
* *
9874 GCAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGTCACATCTTCATATTT-TCGCCATGCCA
66 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCA
9938 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
130 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
*
10003 CAAGACGACTTGTTTTATATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGAATTTTTTAAAA
195 CAAGACGACTTGTTTT-TATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA
* *
10068 ATTTTTTCAGAATGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
259 ATTTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-GTG
* * *
10133 CACAAAAAAATTCAGCTAAAAACACGAAGTGTACAGGATTTTGTGAGCATTTGAAAAAAGTGTCC
323 CACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
*
10198 CGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAAGGG
388 CGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG
* * *
10263 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGAACCCAT
453 GTGTGA-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCAT
* ** * *
10328 CGCACATCATGTGCGTACACCCCCCGCCCCCCCAATCGTTGGAACCTCAATGCCGTCGGTCAGGT
517 CGCACATCATGTGCGCACACCCCCCG-CCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * * *
10393 TCTCCGACGATGGTGCCTCGGG--T-G-AAAAAAAATATGACACCAGCACATGTCC-GAGCCCAG
581 TCTCCGATGATGGTG-CT-GGGCTTGGCGAAAAAAATGTGGCACCAGCACATG-CCTGAGCCCAG
* * * * *
10453 CATGTGCACCCGTAACTCTCGGTTTGGTTTGATCTTACACTGGGAATGAACTCCATATGCTTAGA
643 CATGTGCACCCGCAACCCTCGGTCTGGTCTAATCTTACACTGGGAATGAACTCCATATGCTTAGA
* * * * *
10518 CTGGGAATGAACTCCGTATTCCTAAGCCAACCGATAAAACGAGCGGGCGG
708 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
10568 GCGGGCACTA
Statistics
Matches: 1475, Mismatches: 144, Indels: 62
0.88 0.09 0.04
Matches are distributed among these distances:
877 187 0.13
878 3 0.00
879 2 0.00
880 290 0.20
881 9 0.01
882 5 0.00
883 45 0.03
884 1 0.00
885 130 0.09
886 3 0.00
887 1 0.00
888 1 0.00
891 2 0.00
892 3 0.00
893 7 0.00
894 238 0.16
895 541 0.37
896 7 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (882 bp):
TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGGCAGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTTGTTTTTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAT
TTTTTCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGGTGCAC
AAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCGA
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
TGATTCTCAAGGTTTGATGAGGGATAGGGGGCCAAGATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GATGATGGTGCTGGGCTTGGCGAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCA
CCCGCAACCCTCGGTCTGGTCTAATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCCAATCAACCGGCCAGAGGGGCA
GGATGCACAAGGCGGGGATCGGCCGGGTCCCCCCTACATACTGTCGATCTTGCTACCACAACCCT
CGATCTGATCTGATATTAGTGAGGAATGAACACCATA
Found at i:13044 original size:26 final size:26
Alignment explanation
Indices: 13008--13060 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12998 CCATTCCAAT
13008 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13034 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13060 C
1 C
13061 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:13433 original size:896 final size:895
Alignment explanation
Indices: 10512--15773 Score: 6686
Period size: 883 Copynumber: 5.9 Consensus size: 895
10502 ACTCCATATG
* ** *
10512 CTTAGACTGGGAATGAACTCCGTATTCCTAAGCCAACCGATAAAACGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
* * * *
10577 ACGCCGGCTAGAGAGACGAGAT-CGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
10641 ATCTTCATATTT-TAACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ATCTTCATATTTCT-ACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
10705 AAGCCTTCATGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAATTT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * * * *
10770 TTTACGGTTCGGGATTTTTTTTAAATTTTTTTAGAAAGG-GATTAGGCCCCAAACTTTGTAGACG
260 TTTACGGTTCAGGATTTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * * *
10834 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACTAAATACCCGAAGTGTACAGGATT
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
10899 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
10964 AAAATCTCAAATTCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
11029 GTAAAGGCCAAGTACCAGCACCCATCACACATCTTGTGCGCACACCCCCCTGC-CCCTCAATCGT
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-CTCCCCCAATCG-
* * * * * * *
11093 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCACCGAGTGAAAA
582 CCGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAA
* * ** * * * * * *
11158 A-AATACGACACCAGCACATGCCAAAGCCCAACTTGTGCACCCGTAA-AACTCGGTCCGGTCTGA
647 AGAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCA-TCGGTCCGTTCCGA
* * * * *
11221 TTTTACACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACTCCTTACGCCTAAGTCAACC
711 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA-C
** * *
11286 CAAAAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGG-C
775 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTC
* * ** * * * *
11350 CGGCT-CCCCCTGTGTACTGTCAATCTTGCTATCACAACCCTT-TGTCTGGTCTGAA-
840 CGGTTCCCCCCTGTGTGCTACCAATCCTGCTACCGCAA-CCTTCAGTCTGGTCT-AAT
* ** * ** **
11405 CTTACACTGGGAATGAACTCTATATGCCTAAACCAACCGACGAAATTAGCAAGCAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
* * * **
11470 ACGTCGGCCAGATAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCATTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
11535 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT-TCAAATTCATACAATGGTCCCTT
131 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT-AAATTCATACAATGGTCCCTT
* ** *
11599 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTAAAAAATT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
11664 TTTATGGTTCAGGATTTTTTTAAACTTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGT
260 TTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* *
11729 GATCCTTGTATTTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
325 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
*
11794 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-TCGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
11858 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
11923 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGCCCCCCCAATCGTC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT-CTCCCCCAATCG-C
* * * * *
11987 GGAACACCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGAG-GATGCTGTCCCGGGC----A
583 CGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-AGCGATGGTGCCCCGGGCGAAAA
** * * * * * *
12047 A-AATGCACCACCAGCACATGCCTGAGCCCAGCATGTGCACCTGTAACCCTCGATCCGATCCGAT
647 AGAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCATCGGTCCGTTCCGAT
** *
12111 CTTACACTGTTAATCAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCT
712 CTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC-
* * * * * * *
12176 ACGAAACGAGCGTACGGGCACTCAGTCGGCCAGAGGGGCAAGATGCACAAGCCGAGGATCGATCG
776 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCC
* * * * * * *
12241 GGTCCCCCCCTGCGTGCTACCAATCTTGCTACGGGAACCCTCAGTCTGGTCTGAT
841 GGTTCCCCCCTGTGTGCTACCAATCCTGCTACCGCAACCTTCAGTCTGGTCTAAT
* * *
12296 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCGGGTAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
* *
12361 ACGCCGGCCAGAGAGGCGGGATGCGCAATCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
12426 ATCCTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
12491 AGCCTTCATGTGAAGTTTCATGGTAGGACGACTCATTTTTTATTTTTCACGATTTTTGAAACATT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * * *
12556 TTAAGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTTGCCCCAGACATGGTAGACTTG
261 TTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
* * * * * *
12621 ATCCTTGAATTTTTGTTGCCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
326 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
12686 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCGGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
12751 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
12816 AAGGGCCAAGTATCAGCACCCATCGCACATCATATGCGTACACCCTCCCT-TCCCCCAATCGCCA
521 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCTCTCCCCCAATCGCC-
* * * *
12880 GAACCCTAATGCTGTCGGTTAGGATCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAAAG
584 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAAAG
* * * * *
12945 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGCAGCCATCGGTCCATTCCAATCT
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCATCGGTCCGTTCCGATCT
*
13010 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCAC
714 TACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-AACCAC
* * * *
13075 GAAACGAGCGTGCAGGCGCTCAACCGGTCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCAGG
778 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCCGG
* * * *
13140 TTCCCTCCTGTGTACTACCAATCCTGCTACTGCAACCTTCAGTCTTGTCTAAT
843 TTCCCCCCTGTGTGCTACCAATCCTGCTACCGCAACCTTCAGTCTGGTCTAAT
* ** * *
13193 CTTAGACTGGGAATGAA-TACCGTATGCTTAAGCCAAGTGAC-AAACGAGCGAGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCAC
* *
13256 TACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCA
65 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
13321 CATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTT
130 CATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
13386 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
13451 TTTGCGGTTCGGGATTTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGCTAGACAT
260 TTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* * *
13516 AATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAATGTACAGGATTT
325 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
*
13581 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * * ** *
13646 AAATGTCAAATGCTCTTTAAGGGGGTGTGAATTCTCCACATTTGATGAGGGATAGGAGGCCAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * ** * *
13711 TAAGGGCCTAGTACCAGAACCAATCACACATCATGTAAGCACA-GCCCC-CTACCCCAATCGCCA
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCTCCCCCAATCGCC-
* * *
13774 GAACCCCAATCCCGTCGGTCAGGTTCT-C--CG--G---CA---ATGGTGCCCCAGGCGAAAAAA
584 GAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAAAG
* ** * * * *
13828 AATGCGGCACCAGCACATGCCCGAGCCCAGCATCTGCACCCAAAACCCTCAGTCTGGTCCGATCT
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCATCGGTCCGTTCCGATCT
* * *
13893 TACACTGGGAATGAACTCCATATGCTTAGATTAGGAATAAACTCCGTATGCCTAAGTCAACTCAC
714 TACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC-CAC
* * * *
13958 GAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGAT-TGG
778 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCCGG
* * * * * * *
14022 GTCCCCCCT-TGCATGCTCCCGATCCTGCTGCCACAACCCTT-GGTCTGGTCCAAT
843 TTCCCCCCTGTG--TGCTACCAATCCTGCTACCGCAA-CCTTCAGTCTGGTCTAAT
* *
14076 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
* * *
14141 ACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
14206 ATCTTTATATTT-TGACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTT
131 ATCTTCATATTTCT-ACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14270 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTACAATTTTTGAAACTT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
14335 TTTATGGTTCAGGA-TTTTTTAAAAATTTTTAAGAAGGAGTTTTGGCCGCAAACTTGGTAGACAT
260 TTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* *
14399 GATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATTT
325 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* * * *
14464 TTTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTCAATGGCTACTGGCAGTAAACCTAT
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14528 AAAATCTCAAATGCTCTTTAAGGGGGTGTGCA-TTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
14592 TATAAGGGCCAAGTA-C--CA-CC-T-----A--A--T-CG------------T-------T-G-
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCTCCCCCAATCGC
* * ** * * *
14621 -GAACCCCAATGCTGT-GATCAGGTTCTCCGATGATGCTTCGGC-ACTGGTGCCCCAGGCGAAAA
583 CGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGA-TGGTGCCCCGGGCG-AAA
* * * * **
14683 AAAAATGCGGCACTAGCACATGCCCGAGCCCAG-AGTGTGCACTCGCAACCCTCGGTCCG-TCTA
646 AAGAATGCGGCACCAGCACATGCCCGAGCCCAGCA-TGTGCACCCGCAACCATCGGTCCGTTCCG
* * *
14746 ATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGC
710 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA-A
* * * * * * * *
14811 CCACGAAATGAGCGTGCGGGCGTTCAGCCGACCAGAAGGGTAGGATACGCAAGTCGGGGATCGG-
774 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
** * * * * * * **
14875 CCGAG-TCCCCCCTACGTGCTATCGATCCTGCTTCCGCAACCCTCAATCCGGTCCGAT
839 CCG-GTTCCCCCCTGTGTGCTACCAATCCTGCTACCGCAACCTTCAGTCTGGTCTAAT
* * * * ** *
14932 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCACCGACGATATGAGCGGGCGGGCAAGCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
* * * *
14997 ACGCCGGCCAAAGAGGTGGGATGCGCAAGTCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
15062 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
15127 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* *
15192 TTACGGTTCAGGATTTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGCTAGACATG
261 TTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
*
15257 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
326 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
15322 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
15387 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
15452 AAGGGCCATGTACCAGCACCCATCGCACATCAAGTGCGCAC-CACCCCCTCGCCCCCATAATCGT
521 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCTCTCCCCC--AATCGC
* ** * ** **
15516 CGAAGCCCCAATGCTGTCGGTCAGGTTCTCCGATGATGGTCTGGCGATGGTGCCCCGGTTGAAAA
583 CGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAA
* ** * * *
15581 AGAAATGTGGCACCAGCACATGCTTGAGCACAGCATGTGCACCCGCAACCTTTGGTCCGGTT-CG
647 AG-AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCATCGGTCC-GTTCCG
* * * *
15645 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCATTTGCCTAAGTGAAC
710 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA-
* * ** *
15710 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGTC-GAGGGGCAGGATGCGTAAGCCGAGGATCGGT
774 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGT
15774 TGAGTCCGCA
Statistics
Matches: 3815, Mismatches: 449, Indels: 204
0.85 0.10 0.05
Matches are distributed among these distances:
846 10 0.00
847 14 0.00
849 1 0.00
850 1 0.00
851 2 0.00
854 1 0.00
855 3 0.00
856 278 0.07
857 379 0.10
858 59 0.02
860 2 0.00
861 2 0.00
862 1 0.00
867 1 0.00
868 1 0.00
869 2 0.00
871 2 0.00
872 2 0.00
873 1 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 2 0.00
882 14 0.00
883 482 0.13
884 219 0.06
886 2 0.00
888 2 0.00
889 158 0.04
890 7 0.00
891 433 0.11
892 184 0.05
893 256 0.07
894 359 0.09
895 2 0.00
896 474 0.12
897 258 0.07
898 107 0.03
899 90 0.02
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCACT
ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCTCCCCCAATCGCCGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCGAAAAAGAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCATCGGTCCGTTCCGATCTTA
CACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCCGGTTC
CCCCCTGTGTGCTACCAATCCTGCTACCGCAACCTTCAGTCTGGTCTAAT
Found at i:14784 original size:26 final size:26
Alignment explanation
Indices: 14748--14800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14738 TCCGTCTAAT
*
14748 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
14774 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14800 C
1 C
14801 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22405 original size:26 final size:26
Alignment explanation
Indices: 22376--22425 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
22366 CTGGTCCGAT
22376 CTTACACTAGCAATGAACTCCGTATG
1 CTTACACTAGCAATGAACTCCGTATG
* * * *
22402 CTTAGACTGGGAATGAATTCCGTA
1 CTTACACTAGCAATGAACTCCGTA
22426 AGCCTAAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTACACTAGCAATGAACTCCGTATG
Found at i:23583 original size:895 final size:886
Alignment explanation
Indices: 21632--24369 Score: 4180
Period size: 895 Copynumber: 3.1 Consensus size: 886
21622 GCCCGTGACA
* * * * * *
21632 CCTGCGTGCTATCGATCCTGTTGTCATAACCCTT-GGTCCGGTCCGATCTTAGACTGGGAATGAA
1 CCTGCGTGCTGTCGATCCTGCTGCCACAA-CCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
* * * *
21696 CTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCACT-ACCGGCCAGAGAGGCG
65 CTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGGC-GGCACTCGCCGGCCAGAGAGGCG
** *
21760 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTTGCCA
129 GGATGAACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTTTGCCA
21824 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
194 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
21889 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTT
259 CATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTT
21953 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
324 TTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
22018 GCATGCAAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
389 GCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
22083 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
454 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
22148 GGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
519 GGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
22213 CATCGCACATCATGTGCGCACACCCCCCCCCCCCAATCGTCGGAACCCCAATG-C-CCGGTCAGG
584 CATCGCACATCATGTGCGCACACCCCCCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG
*
22276 TTCTCCGCGATGCTC-GATGATGGTGCCCCGCA--AAAAAAATATGGTACCAGCACATGCCCGAG
649 TTCTCCGCGATGCTCTGA-GATGGTGCCCCG-AGGAAAAAAATATGGCACCAGCACATGCCCGAG
* * * * * *
22338 CCCAGCAAGTGTACCCACAACCCTCGGTCTGGTCCGATCTTACACTAGCAATGAACTCCGTATGC
712 CCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACTCTGGGAATGAACTCCGTATGC
* * * * * * *
22403 TTAGACTGGGAATGAATTCCGTAAGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACC
777 TTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCC
** * * * *
22468 GGCCAGAGGGGCAGGATGTGCAAGCTGGGGATCGACTGGGTCCAC
842 GGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCC
* * *
22513 CCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGGAC
1 CCTGCGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
* * * *
22578 TCCGTATGCCTAAGCTAACCGACGAAACAAGCGGACGGGCGAGCACTACGTCGGCTAGAGAGGCG
66 TCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGGCG-GCACT-CGCCGGCCAGAGAGGCG
*
22643 GGAT-AAGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAAATTTTGCC
129 GGATGAA-CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTTTGCC
* *
22707 ATGCCAATGCCATTTTTACGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCATGTGAAGTT
193 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* *
22772 TCATGGCAAGACGACGCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGA-TTT
258 TCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTT
* * *
22836 TTTAAAACTTTTTTCAGACGGAGTTTTGCCCCCAAACTTGCTAGACGTGATCCTTGTATTTTTGT
323 TTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
22901 TGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATGTGAAAA
387 TGGCATGC--AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
22966 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
450 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
23031 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCGAAGTACCA
515 TTAAGGGGGTGTGAGTTC-TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
23096 GCACCCATCGTACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGCC
579 GCACCCATCGCACATCATGTGCGCACA-CCCCC-CCCCCCCAATCGTCGGAACCCCAATGCCGCC
* *
23161 GATCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGAGTGAAAAAAATACGGCACCAGCACA
642 GGTCAGGTTCTCC-GCGATGCTCTGA-GATGGTGCCCCGAG-GAAAAAAATATGGCACCAGCACA
* * * *
23226 TGCTCAAGCCCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACTCTGGGAATGAACT
704 TGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACTCTGGGAATGAACT
* *
23291 CCATATGCTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGT
769 CCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGT
**
23356 GCTCAGCCGGCCAGA-GGGCAGGATGCACAAGCCGGGGATCGGCCAAGTCCCC
834 GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCC
* * * * * *
23408 CCTACGTGCTGTCGATGCTGCTGCCACAACCTTCGGTTTGATCCTATCCTAGACTGGGAATGAAC
1 CCTGCGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
* *
23473 TCCGTATGCCTAAGCCAATCGATGAAACAAGCGGACAGGCAGGCACTGCGCCGGCCAGAGAGGCG
66 TCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGGC-GGCACT-CGCCGGCCAGAGAGGCG
*
23538 GGATGTACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-AATATTTCTGCC
129 GGATGAACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTT-TGCC
23602 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
193 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* ** *
23667 TCATGGCAAGACGACCCGTTTTCTATTTTTTACGATTTTTTTAACTTTTTACTGTTCGAGATTTT
258 TCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTT
23732 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TT
323 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
23796 GGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
388 GGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
23861 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
453 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
23926 AGGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
518 AGGGGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
23991 CCATCGCACATCATGTGCGCACACCCCCTACCCCCCAATCG-CTAGAACCCCAATGCCGTCGGTC
583 CCATCGCACATCATGTGCGCACACCCCC-CCCCCCCAATCGTC-GGAACCCCAATGCCGCCGGTC
* * * *
24055 AGGATCT-C-CG--G---T--GATGGTGCCCCGAGCGAAAAAAATGTGACACCGGCACATGCCCG
646 AGGTTCTCCGCGATGCTCTGAGATGGTGCCCCGAG-GAAAAAAATATGGCACCAGCACATGCCCG
* *
24111 AGCCCATCATGTGCACCCACAACCCTCGGTCCGGT-CGATCTTACTCTGGGAATGAACTTCGTAT
710 AGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACTCTGGGAATGAACTCCGTAT
*
24175 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-ATGCAGGTGCTCAG
775 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAG
* * *
24239 CCGGCCAGAGGGGTAGGATGCACAAGCCGAGGATCGGTCGGGTCCCC
840 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCC
* * * * * *
24286 CCTGTGTGCTATCAATCCTGCTACCACAACCGTT-GGTCTGGTCCGATCTTAGAATGGGAATGAA
1 CCTGCGTGCTGTCGATCCTGCTGCCACAACC-TTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
*
24350 CTTCGTATGCCTAAGCCAAC
65 CTCCGTATGCCTAAGCCAAC
24370 TAACGAAACA
Statistics
Matches: 1691, Mismatches: 139, Indels: 57
0.90 0.07 0.03
Matches are distributed among these distances:
877 22 0.01
878 176 0.10
879 71 0.04
880 4 0.00
881 92 0.05
882 1 0.00
883 62 0.04
884 136 0.08
885 65 0.04
887 137 0.08
888 70 0.04
889 7 0.00
890 66 0.04
891 71 0.04
892 150 0.09
893 10 0.01
894 29 0.02
895 364 0.22
896 158 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CCTGCGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACGGGCGGCACTCGCCGGCCAGAGAGGCGGG
ATGAACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAATATTTTGCCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
CTCCGCGATGCTCTGAGATGGTGCCCCGAGGAAAAAAATATGGCACCAGCACATGCCCGAGCCCA
GCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACTCTGGGAATGAACTCCGTATGCTTAG
ACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCC
AGAGGGGCAGGATGCACAAGCCGGGGATCGGCCGGGTCCCC
Found at i:25590 original size:26 final size:26
Alignment explanation
Indices: 25561--25613 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25551 CCAGTCCGAT
* *
25561 CTTACATTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
25587 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
25613 C
1 C
25614 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Done.