Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168233.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25836
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:73 original size:41 final size:41
Alignment explanation
Indices: 5--114 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
1 AAAA
* * * *
5 TAAATTGCTCCTCTACACAAAGGCACCACGACTTTTGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAG
*
46 TAAATTGCTCCTCTAAACAGAGCCACCACAACTTTGGAAAG
1 TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAG
*
87 TAAATTGCTCCTCTAAATAGAGGCACCA
1 TAAATTGCTCCTCTAAACAGAGGCACCA
115 AATTGCTCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (41 bp):
TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGGAAAG
Found at i:117 original size:26 final size:26
Alignment explanation
Indices: 88--140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
78 TTTGGAAAGT
*
88 AAATTGCTCCTCTAAATAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
114 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
140 A
1 A
141 CGACTTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:205 original size:39 final size:42
Alignment explanation
Indices: 114--205 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
104 TAGAGGCACC
*
114 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGT
1 AAATTGCTCCTCTAAACAGAGGCAACACGACTTTGGAAAAGT
156 AAATTGCTCCTCTAAACAGA-GCAACA-GACTTTGG-AAAGT
1 AAATTGCTCCTCTAAACAGAGGCAACACGACTTTGGAAAAGT
195 AAATTGCTCCT
1 AAATTGCTCCT
206 TGACAATCAT
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
39 16 0.33
40 8 0.16
41 5 0.10
42 20 0.41
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
AAATTGCTCCTCTAAACAGAGGCAACACGACTTTGGAAAAGT
Found at i:1446 original size:28 final size:24
Alignment explanation
Indices: 1415--1476 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 24
1405 AATTTGAATC
1415 TCTTTTTTTCATTTTCTCATTTCTTTCT
1 TCTTTTTTTC-TTTTCT--TTT-TTTCT
*
1443 TCTTTTTTTCTTTTGTTTTTTTCT
1 TCTTTTTTTCTTTTCTTTTTTTCT
1467 TCTTTCTTTT
1 TCTTT-TTTT
1477 TTCATCATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
24 10 0.31
25 7 0.22
27 5 0.16
28 10 0.31
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (24 bp):
TCTTTTTTTCTTTTCTTTTTTTCT
Found at i:1454 original size:15 final size:14
Alignment explanation
Indices: 1434--1491 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
1424 CATTTTCTCA
1434 TTTCTTTCTTCTTTT
1 TTTC-TTCTTCTTTT
*
1449 TTTCTT-TTGTTTT
1 TTTCTTCTTCTTTT
1462 TTTCTTCTT-TCTTT
1 TTTCTTCTTCT-TTT
* *
1476 TTTCATCATCTTTT
1 TTTCTTCTTCTTTT
1490 TT
1 TT
1492 CATTTTTCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 13 0.35
14 19 0.51
15 5 0.14
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTCTTCTTCTTTT
Found at i:1487 original size:20 final size:20
Alignment explanation
Indices: 1464--1502 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1454 TTTGTTTTTT
*
1464 TCTTCTTTCTTTTTTCATCA
1 TCTTCTTTCATTTTTCATCA
*
1484 TCTTTTTTCATTTTTCATC
1 TCTTCTTTCATTTTTCATC
1503 CGTTGTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (20 bp):
TCTTCTTTCATTTTTCATCA
Found at i:5496 original size:59 final size:58
Alignment explanation
Indices: 5372--5703 Score: 490
Period size: 59 Copynumber: 5.7 Consensus size: 58
5362 TTTTGTGCAG
5372 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
5428 GGAAAATTGATACATTCAACTTTTCCCCAAAAATGTTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTTGAAAATTTATTTTTAA
* *
5487 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAATGTTTTTTTGAAAATTTATTTTTAG
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAAATATTTTTTTGAAAATTTATTTTTAA
* * * * *
5546 GGAAAATTGCTACTTTCAACTTTTCCCTAAAAATATTTTTTAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
* ***
5605 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
5662 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
5704 TTGGAAATTT
Statistics
Matches: 244, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
56 23 0.09
57 47 0.19
58 43 0.18
59 125 0.51
60 6 0.02
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:5749 original size:14 final size:14
Alignment explanation
Indices: 5730--5787 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
5720 TTATTTAAAG
*
5730 AAAATAGAATAATA
1 AAAATAGAAAAATA
5744 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
5758 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
5773 AAAAT--AAAAATA
1 AAAATAGAAAAATA
5785 AAA
1 AAA
5788 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:5757 original size:17 final size:17
Alignment explanation
Indices: 5737--5787 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
5727 AAGAAAATAG
5737 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
5754 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
5772 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
5788 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:5796 original size:17 final size:16
Alignment explanation
Indices: 5774--5813 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5764 AGTAAAACAA
*
5774 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
5790 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
5807 AAATAAA
1 AAATAAA
5814 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:5962 original size:10 final size:10
Alignment explanation
Indices: 5947--5971 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
5937 GGCATTGGAA
5947 GCTCGGCTTG
1 GCTCGGCTTG
5957 GCTCGGCTTG
1 GCTCGGCTTG
5967 GCTCG
1 GCTCG
5972 AAGGGGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.32, G:0.40, T:0.28
Consensus pattern (10 bp):
GCTCGGCTTG
Found at i:6837 original size:8 final size:7
Alignment explanation
Indices: 6824--6941 Score: 55
Period size: 8 Copynumber: 16.1 Consensus size: 7
6814 AAAAAAAATT
6824 ATAATATA
1 ATAATA-A
6832 ATAATAA
1 ATAATAA
6839 ATACATAA
1 ATA-ATAA
*
6847 CTATATAA
1 ATA-ATAA
*
6855 ATAAATTAC
1 AT-AA-TAA
6864 AT-ATAA
1 ATAATAA
*
6870 ATATTAA
1 ATAATAA
* *
6877 TAGAAAAA
1 -ATAATAA
*
6885 AAAATAA
1 ATAATAA
* *
6892 AGATATAC
1 ATA-ATAA
6900 ATAAT-A
1 ATAATAA
6906 ATAAT-A
1 ATAATAA
6912 ATAAT-A
1 ATAATAA
6918 ATAATAATA
1 ATAAT-A-A
6927 ATAATAA
1 ATAATAA
6934 ATAATAA
1 ATAATAA
6941 A
1 A
6942 ATACATAAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
6 21 0.24
7 26 0.30
8 28 0.33
9 11 0.13
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (7 bp):
ATAATAA
Found at i:6906 original size:3 final size:3
Alignment explanation
Indices: 6900--6953 Score: 76
Period size: 3 Copynumber: 18.0 Consensus size: 3
6890 AAAGATATAC
6900 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA
6945 CATA A-A ATA
1 -ATA ATA ATA
6954 CAAAAGAAGG
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.09
3 37 0.79
4 6 0.13
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:8679 original size:26 final size:26
Alignment explanation
Indices: 8650--8702 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8640 GTTGACTTAG
*
8650 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8676 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8702 G
1 G
8703 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:8769 original size:876 final size:879
Alignment explanation
Indices: 7068--9418 Score: 3219
Period size: 899 Copynumber: 2.7 Consensus size: 879
7058 GATGTCTACA
7068 GGGGGCC-GG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTTAATATTGG
1 GGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCCTT-ATATTGG
* *
7131 -CCCCTATCCCTCATCAGACCTCGAGGACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
64 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
7194 TTTGCCTGCCAGTAGCAATTAAAGTGTCTCG-AATGGGGACACTTTTTTCAAATGGTCA-AACAT
129 TTTG-CTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTAAAATGGTCACAAAAT
* *
7257 CTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAG-GCCAAAAAAATACAAGGATCCACG
192 CTTGTACACTTCGAGTTTTTAGCTAATTTTTTTAG-GC-GTGCCAAAAAAATACAAGGAT-CACG
* * * *
7321 TCTACCAAGTTTGGGAACAAAATGCCTTCGAAAAAAATTTTAAAAAATCATGAA-CTC-AAAAGT
254 TCTACCAAGTTTGGGACCAAAATTCCTTC-CAAAAAATTTTAAAAAATCATGAACCGCAAAAAGT
* **
7384 TTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTTGCGTGAAGGCTTAAGG
318 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
7449 GACCATTGTATAAATTTACAAGCCAT-AAAATGGCATT-GCAATGCAAAAATATG-AGATGTGCC
383 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGCAGAAATATGAAGATGTGCC
* *
7511 -AAACCC-CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGTATAGTAC
447 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-A-CGTA-
* * ** * * * * *
7574 CCGCCCGCCAGCCTACCCGCTCATTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCCTGTAT
508 GCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * *
7639 AGGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCAGTAGCACGCAGAGGGAAACTCGATCGA
573 AAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGAAACCCGACCGA
* *
7704 TCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGCTTGA
638 TCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGCTTGA
*
7769 CTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATTGGAC
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATTGGAC
* * ** **
7834 TGGATCGAGGGTTACAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTTCGT
768 CGGACCGAGGGTTACAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCAC
* *
7899 TGGGGCACCAT-C-G-T-C-G-GA-GGCATTGGGGTTCCGGCGATCGG
833 CGGGGCACCATCCGGATCCGGAGACGGCATTGGGGTTCCGACGATC-G
*
7940 GGGGGCCGGGTGGGTGTGCGCACATGATGTACGAAT-GGTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGGCCGGGTGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTACTTGGCCCTTATATTGGC
8004 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
65 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
8069 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTT
130 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTT
*
8134 GTACACTTCGAGTTTTTAGCTAAATTTTTTTAGGCGTGCCAACAAAAATACAAGGATCATGTCTA
195 GTACACTTCGAGTTTTTAGCT-AATTTTTTTAGGCGTGCCAA-AAAAATACAAGGATCACGTCTA
* * * * *
8199 CCAAGTCTGGGGCCAAAATTCCTTCCAAAAAAGGTTTAAAAAATCCTGAACCGCAAAAAGTTTTA
258 CCAAGTTTGGGACCAAAATTCCTTCCAAAAAA-TTTTAAAAAATCATGAACCGCAAAAAGTTTCA
*
8264 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
322 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
8329 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAAC
387 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
8394 CCACCTACCACCCTAACGATCCACGGCTTACGCATCCCATCTCTCTGGCCGACGTAGGGCCCTCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCC
8459 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GA
517 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-
** ** * ** *
8523 ACC-GAACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGT
581 ACCAG-ACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGAAACCCGACCGATCCCCGG
* * ** *
8587 CTTGCGCATCCTGCCCCTA-TGGCCGGCTGAGCGCCCGCATGCTAGTTTTGTGGGTTGACTTAGG
645 CTTGCGCATCCCGCCCC-ACTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGCTTGACTTAGG
* * *
8651 CATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC
709 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATTGGACCGGACC
* *
8716 GAGGGTTGC-GACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
774 GAGGGTTACAG-CAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
*
8780 CACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCG
838 CACCAT--CC-G-G-ATC-C--G-G-A---GA----CGGCATTGGGGTTCCGACGATCG
*
8839 GGGGGCCGGGTGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
8904 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
66 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
8969 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAA-GGTCACAAAATCTT
131 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-AAAATGGTCACAAAATCTT
* * *
9033 GTACACTTCGAGCTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTA
195 GTACACTTCGAGTTTTTAGCT-AATTTTTTTAGGCGTGCC-AAAAAAATACAAGGATCACGTCTA
* * * * *
9098 CCAAGTTTGGGACCAAAACTCCATCCGAAAAAATTTTAAAAAATCTTGAACCGTAGAAAGTTTCA
258 CCAAGTTTGGGACCAAAATTCCTTCC-AAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTCA
*
9163 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
322 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
9228 ATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
387 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
9293 CCACCTACCACCCTATCGATCCACGG-ATGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCC
* * * * *
9357 CGTCCGCCAGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
517 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
9419 TGACTGGGCC
Statistics
Matches: 1317, Mismatches: 112, Indels: 74
0.88 0.07 0.05
Matches are distributed among these distances:
872 15 0.01
873 94 0.07
874 148 0.11
875 30 0.02
876 375 0.28
877 26 0.02
878 12 0.01
879 8 0.01
880 43 0.03
882 1 0.00
884 1 0.00
886 1 0.00
890 1 0.00
895 2 0.00
898 91 0.07
899 438 0.33
900 31 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
GGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTAATTTTTTTAGGCGTGCCAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGACCAAAATTCCTTCCAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGAAACCCGACCGATCCCCGGCTTGCG
CATCCCGCCCCACTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGCTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
ACAGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCC
GGATCCGGAGACGGCATTGGGGTTCCGACGATCG
Found at i:11525 original size:4 final size:4
Alignment explanation
Indices: 11516--11549 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
11506 TCGGCGTAGT
* *
11516 GCCC GCCC GCCC ACCC GCCT GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
11550 TCTTTTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.03, C:0.71, G:0.24, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:11767 original size:26 final size:26
Alignment explanation
Indices: 11731--11781 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
11721 TGACTTAGGT
* *
11731 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCAATCCCAATCTAAGC
11757 ATACGGAGTTCAATCCCAATCTAAG
1 ATACGGAGTTCAATCCCAATCTAAG
11782 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCAATCCCAATCTAAGC
Found at i:13392 original size:26 final size:26
Alignment explanation
Indices: 13350--13402 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13340 GTTAACTTAG
* *
13350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATAATTCCCAGTCTAA
13376 GCATACGGAGATAATTCCCAGTCTAA
1 GCATACGGAGATAATTCCCAGTCTAA
13402 G
1 G
13403 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATAATTCCCAGTCTAA
Found at i:15642 original size:876 final size:875
Alignment explanation
Indices: 12371--17493 Score: 6500
Period size: 894 Copynumber: 5.8 Consensus size: 875
12361 ACAAGGGTTA
* * * *
12371 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGTCCCTCTGGCCGGCTA
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
12436 AGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
12501 GACCGGACCGAGGATTGAAGCAGCACATACTGGGCTAGGGCATGTGCTGGTGTCGTATTTTTCTT
131 AATCGGACCAAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
12566 CATCGGGGCACCATCGTCGAAGCATCGTCAGAGAACCTGATCGATGGCATTGGGATTCCAGCGAT
196 CATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGAT
* * * * *
12631 TGGGGGGGCCGGGGGGTTTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG
261 CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
12696 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
326 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
12761 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAGTCT
391 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
12826 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGCCAACAAAAATACAAGGATCACGGCT
456 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * * * *
12891 ACCAAGTTTGGCACCAAAATGCCTTTCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTT
521 ACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
*
12956 GAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
586 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
13021 CATT-TATGAATTTCCAAGCCATAAAAATGGCATTGGCACGTAGAAATACGAAGATGTGCCTAAA
651 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * ** *
13085 CCCACCTACCACCCTATCTATCCATGGCTTGCACATCTTGCCTCTCTGGCTGGCGTAGAGCCCAC
716 CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGC-GGCGTAGTG----C
* * *
13150 CCGTCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCT
776 CCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* *
13215 AAGATGGGACGAGACTGAGGGTTGCAGTAGTAGGAT
840 AAGATCGGACCAGACTGAGGGTTGCAGTAGTAGGAT
** * * * * * * * * *
13251 CGATAGCACACAGATGGGGACCCGATTGATCCCCGGCTTGTGCGTCTCGCCCTTTTGGCCTGCTG
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
13316 AGCGCCCGCACGCTCCTTTCGTGTGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-
* * * *
13381 CGGAGATAATTCCCAGTCTAAGATCGGATAGGACTGAGGGTTGCGGCAGCACATGCTTGGCTCGA
129 C----A-AA-T--C-G-----GA-C-CA-A-G---GA---TTGAGGCAGCACATGCTGGGCTCGG
* * * *
13446 GAATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGCCGGAGAACTTG
170 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* *
13511 A-CG-GGCGACATTGGGGTTCC-GACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
235 ATCGATG-G-CATTGGGATTCCAG-CGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
*
13573 TGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
297 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
13638 CCCCTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTATGAAATGGG
362 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
13703 GACATTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTGTTGTCC
427 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
13768 ATGCCAACAAAAATACAACGATCATGTCTACCAAGTTCGGGGCCAAAACGCCTT-CGAAAAAAAT
492 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCTTCCG-AAAAAAT
* * * *
13832 TTTAAAAAATTCCGAACCGTAGAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCATCTTGC
556 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
*
13897 CATGAAAC-TCAACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
621 CATGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
13961 TGGCATGCAGAAATATGAAGATGTACCCAAACCCACCTACCACCCTATCGTTCCATGGCTTGCAC
685 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
* * * * * *
14026 TTCCCGCCTCTCTGGACGGCGTCGTGCCCACCCGCCCGCCCGTCCGCTCGTTTTGTTGGTTGGCT
750 ATCCCGCCTCTCTGG-CGGCGTAGTGCCC-GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *** *** *
14091 TAGGCATACGGAGTTCATTTCCAGTCTAGGATCAGACCAGACTGATTTTTATGGTAGCAGGAT
813 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGTAGGAT
* * *
14154 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTG
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
14219 -GATGCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAGC
66 AG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * *
14283 GGATCGGACCCAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCAGCATTTTTCT
130 AAATCGGACCAAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* *
14348 TCA-CTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATTGATGGCATTAGGATTCCAGCG
195 TCATC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAGCG
*
14412 ATCGGGGGGG-C-GGGGGTGTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
259 ATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
14475 GGCCCCCTATGCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
324 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
**
14540 GGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
389 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
14605 CTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
454 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
*
14670 CTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
519 CTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
** * *
14735 TGGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
584 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
14800 ACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCACACAGAAACATGAAGATGTGCCTA
649 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * * * *
14865 AACCCACCTACCACCCTATGGATCCATGACTTACGCATCCCGCCTCTTTGGTCGACGTAGTGCCC
714 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGG-CGGCGTAGTGCCC
* * * *
14930 GCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCTCAGTCTAAG
778 GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
14995 ATTGGACTAGACTGAGGGTCGCGGCAGCAGGAT
843 ATCGGACCAGACTGAGGGTTGCAGTAGTAGGAT
* * * * * *
15028 CGCCAGCACGCAGAGGGGAACCCGGTCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * *
15093 AGCGTTCGCACGTTCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
*
15158 AATCGGACCAAGGATTGAAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
131 AATCGGACCAAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
15223 AATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCTATGGCATTGAGATTCCAGCGAT
196 CATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGAT
* * **
15288 CGGGGGGGTCGGGGGGTGTGCGCACATAATGTGCAATGGGTG-TCGGTGTTTGGCCCTTATATTG
261 CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTG
* *
15352 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAA
325 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
15417 GTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGG-CACAAAGT
390 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TGGTCACAAAAT
* * *
15481 CTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTATACATGCCAACAAAAATACAAGGATCACGT
454 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** ** **
15546 CTACCAAGTTTGGCACCAAAATGCCTTTTGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTT
519 CTACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
15611 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
584 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15676 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTA
649 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
*
15741 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTG--C
714 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGG-CGGCGTAGTGCCC
15804 -CCGCCCGCCCG---GC-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
778 GCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
15864 ATTGGACCAGATTCAGTGTTGCAGTGGTAGGAT
843 ATCGGACCAGACTGAGGGTTGCAGTAGTAGGAT
* * * * *
15897 CGGCAACACGCAGAGGGGGACCTGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * **
15962 AGCGCCCACACGCTCGTTTCGTCGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCACA
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT------A
* *
16027 CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCA-CACATGCTGGGCTCGG
125 ---AG---------A-TC-AA-ATCGGACC--A---AGGATTGAGGCAGCACATGCTGGGCTCGG
* * * * * ** * *
16091 CCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGTCACTATCACCGGAGCATCACCGGACAACCTG
170 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
** * ** * *
16156 ATCGGCGGCATTGGGGTTCCATTGAT-TGGGGGGTCGGGGGGGTGTGCGCACATGATGTGTGATG
235 ATCGATGGCATTGGGATTCCAGCGATCGGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
16220 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTAACTCCCC
299 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
16285 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
364 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
16350 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTCTGTGCAT
429 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
16415 GCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAA-GTCATTCCGAAAAAATTT
494 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATG-CCTTCCGAAAAAATTT
* * *
16479 TAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCATCTTGCAA
558 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
* *
16544 TTAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
623 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * * *
16609 CACACAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTCGCACTTC
688 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
* * **
16674 CCGTCTCTCTGGCTGGCGTAGT-----------GCCTGCCCGCTCGTTTCGTTAGTTGGCTTAGG
753 CCGCCTCTCTGGC-GGCGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
16728 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCAGCAATAGGAT
817 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCAGTAGTAGGAT
* ** * * ** * * ** *
16787 CAGCAGCACATAGAGGTGGACTCGATCGATCCCCTACTTGCACTTTTCGTCCCTCTGGCCGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
16852 AGCACCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * *
16917 GACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTCCCGTATTTTTCTT
131 AATCGGACCAAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * ** * * * *
16982 CGTCGAGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTTC-GACAA
196 CATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAG-CGA
*
17046 TCGGGGGGCTCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
260 TCGGGGGGGTCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
17111 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAAAAAGCATTTGAGATTTTACA
324 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
17176 GGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAAT
389 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
17241 CTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
454 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
17306 CTAGCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGT
519 CTACCAAGTTTGGGGCC-AAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * * * * * * * *
17370 TTAAAAAATCATGAAAAACAGAAAACGAGTCGTCTTACCGTGAAACTTTACGTGAAGACTTATGA
583 TTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
17435 GACCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCACGCAGAAATATGAAGAT
648 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
17494 CGGATCGAAC
Statistics
Matches: 3700, Mismatches: 455, Indels: 190
0.85 0.10 0.04
Matches are distributed among these distances:
864 12 0.00
865 90 0.02
866 404 0.11
867 4 0.00
869 179 0.05
870 2 0.00
871 2 0.00
872 1 0.00
873 10 0.00
874 313 0.08
875 462 0.12
876 466 0.13
877 107 0.03
878 5 0.00
879 1 0.00
880 109 0.03
881 4 0.00
882 1 0.00
883 1 0.00
884 2 0.00
886 6 0.00
887 4 0.00
888 2 0.00
889 4 0.00
890 176 0.05
891 1 0.00
892 2 0.00
893 14 0.00
894 544 0.15
895 11 0.00
896 3 0.00
897 1 0.00
899 1 0.00
900 1 0.00
901 1 0.00
902 2 0.00
903 190 0.05
904 1 0.00
905 7 0.00
906 449 0.12
907 104 0.03
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
AATCGGACCAAGGATTGAGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGATGGCATTGGGATTCCAGCGAT
CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAATGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCGGCGTAGTGCCCGCC
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAGACTGAGGGTTGCAGTAGTAGGAT
Found at i:19779 original size:26 final size:26
Alignment explanation
Indices: 19743--19795 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19733 GTTGACTTAG
*
19743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19769 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
19795 G
1 G
19796 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21646 original size:26 final size:26
Alignment explanation
Indices: 21597--21648 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21587 GTTGACTTAG
**
21597 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21649 TATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22557 original size:26 final size:27
Alignment explanation
Indices: 22506--22557 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
22496 GGCTTAGGCA
*
22506 ATACGGAGTTCATTCCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCCAGTCTAAGC
22533 ATACAGAGTTCATT-CCCAGTCTAAG
1 ATACAGAGTTCATTCCCCAGTCTAAG
22558 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (27 bp):
ATACAGAGTTCATTCCCCAGTCTAAGC
Found at i:23767 original size:26 final size:26
Alignment explanation
Indices: 23737--23789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23727 GTTGACTTAG
23737 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
23763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
23789 G
1 G
23790 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:24633 original size:900 final size:883
Alignment explanation
Indices: 22846--25836 Score: 3550
Period size: 856 Copynumber: 3.4 Consensus size: 883
22836 TGCCAGTCTA
* * * *
22846 AAGCATACGGAGTTCGTTCCTAGTCCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCT
1 AAGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCT
* * * * * *
22911 GGGCTCGGACATGTGGTGGTGCCCGCATTTTTCTTCGTCGGGGCACCAATAATCGGAGCATTGCC
65 GGGCTCGGGCATGTGCTGGTG-CCACATTTTTCTTCGTCGGGGCACC-ATCATCGGAGCATCGAC
* * * *** **
22976 GGAGAACCTGCCCGACGGCATTGGGGTTCCGATGATAGCTCGCTGGGGGCGCGTGTGCGCACATG
128 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGC-CAGGG-G-GTGTGCGCACATG
*
23041 ATGTACGATGGGGTGCTGGTACTTGGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAG
190 ATGTACGAT-GGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* ** *
23106 AACTCACACCCCCCTGTAAGAGGATTTGAGATTTTACAGGTTTGCTG-CAACAACCATTAAAGTG
253 AACTCACA-CCCCCT-TAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
23170 TCTGAAATGGGGAACACTTTTTTCAAAATGGTAACAAAATCTTTGTACACTTCGGGTTTTTAGCT
316 TCTGAAATGGGG-ACACTTTTTTC-AAATGGTCACAAAATC-TTGTACACTTCGAGTTTTTAGCT
* * * * *
23235 GAATTGTTTTGTGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGTCCAAAACTT
378 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTC
*
23300 CTTTCGAAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTGAAAAAATAGA
443 CTTTC-AAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAAATAGA
*
23365 AAACGAGTCGTCTTGCAATGAAACTTCACGTGAAAGGCTTAAGGGACCATTGTATGAATTTACAA
505 AAACGAGTCGTCTTGCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAA
** *
23430 GCCATAAAAAATGGCATTCCCACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CATGTT
569 GCCAT-AAAAATGGCATTGGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTC-T-AT
* * * * * *
23494 CGATCCACGCTTGCGCATTCCCGTCTCTTTGGCCGGCGTAATGCCCGCTCGCCCGCCCACCCAGT
631 CGATCCACGCTTGCGCA-TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCC-GT
* *
23559 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGG
694 CCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
* * * * * * * *
23624 TTACAGCAGTAAGATTGGCAGCACGC-AAGGGGGAACCGGCCGATCCCCGGCTTGTGCATCCTGC
759 TTGCAGCAGCAGGATTGGTAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
23688 CCCTCTGGCCGACTGAGCGCCTGCACGCTAGTTTCATACGTTGACTTAGGCATACGAAGTTCATT
824 CCCTCTGGCCGGCTGA--GCCTGCACGCTCGTCTC-T--GTTGACTTAGGCATACG-AGTTCA--
23753 CCCAATCT
881 --C--T-T
*
23761 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG
* * * * *
23826 GGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGAGCACCATCGTCGGAGCATCGATGGA
66 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGACGGA
* * *
23891 GAACCTGACCGACGGCATTTGGGTTCC-AGCGATCGGGGGCCAGGGGGTGAGCGCACATGATGTT
131 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGCCAGGGGGTGTGCGCACATGATGTA
* * *
23955 CGATGGTTGTTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
24020 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAAAT
260 ACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
24085 GGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
24150 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTTCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCAAAAAA
** *
24215 ATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCGTAAATCATGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
24279 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
24344 ATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACTCTATCGATCCACAGCTTGT
583 ATTGGCA--CAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCAC-GCTTGC
* * * *
24409 GCATCCCGTCTGTCTAGCCGACGTAGTGCTCGCCCGCTCGCCCGCCCGCTCCTTTCGTCGGTAGG
645 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCG-TCCTTTCGTCGGTTGG
* *
24474 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGCAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGAT
* * * *
24539 TGGTAGCACGCAAAGAGGGACCCGACCGATCCCCAGCTTGCGCATCCCG-CCCTTTGGTCGGCTG
774 TGGTAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
24603 AGCACTTGCACGCTCGTCTC----G---T--G-----G-GTTGACTT
839 AGC-C-TGCACGCTCGTCTCTGTTGACTTAGGCATACGAGTTCACTT
* * * * **
24635 AGGCATACGGAGTTCACTTCCCAGTCAAAGATCAGACCGGACCGAGGGTTGTGGCAATACATGCT
1 AAGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCT
* *
24700 GGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCG-CTGGGGCA-C--CATC---G---C-A-G
65 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCATCGGAGCATCGACG
* * **
24753 GAGAACCTGACCGGCGACATTGGGGTTCCGGTGATC----G---GGGGGTGTGCGCACATGATGT
129 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCAGGGGGTGTGCGCACATGATGT
* *
24811 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCG
194 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
24876 CACCCCCTTAAGAAGCATTTGAGATTTTATAGGCTTGTTGCCAGTAGCAATTAAATTGTCTGAAA
259 CACCCCCTTAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
24941 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
25005 GTGCATGCCAACAAAATTACAAGGATCATGTTTACCAAGG-TTGGGGCCAAAACTCCTTTCGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACC-AGGTTTGGGGCCAAAACTCCTTTCAAAA
* * *
25069 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
25134 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
25199 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACT-TATCGATCCACGGCTTG
582 CATTGG--CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCAC-GCTTG
* * * *
25263 CGCATCCCGTTTCTCTTA-CC-AGCATAGTGCCCGCCCGCCCGCCCGCCTGTCCGTTTCATCGGT
644 CGCATCCCGTCTCTC-TAGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCCCGTCC-TTTCGTCGGT
* * * *
25326 TGGGTCAGGCATACGGATTTCATTCCCAATCTAAGATCAGA-TCGGACCGAGGGTTGC-GACAGC
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCAG-CAGC
* * * ** * * *
25389 AGGATCGATAACACATAGAGGGGGACCCGACCGATCCCTGGCTTTCGCATCCCGCCCCTCTGGCC
769 AGGATTGGTAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
25454 GGTTGAG-C-GCCCGCACG-CTC-G-T---TT---CAT--GGGTTGACTT
834 GGCTGAGCCTGCACGCTCGTCTCTGTTGACTTAGGCATACGAGTTCACTT
* * * * **
25491 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGGGGTAGCACATGCTG
1 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG
* * * ** * *
25556 GGCTCGGGCATGTGCTCGTTCCATATTTTTCTTCGTCGGGGTTCCATCACCGGAGCATCGCCGGA
66 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGACGGA
*
25621 GAACCTGACCTG-CGGCATTGGGGTTCCGACGATCGGGGGGCCAAGGGGGTTGTGCGTACATGAT
131 GAACCTGACC-GACGGCATTGGGGTTCCGACGATC-GGGGGCC-AGGGGG-TGTGCGCACATGAT
* * * **
25685 GTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCGATCCCTTATCAAACCTTAAGAACT
192 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
25750 CAC-CCCGTCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTCGCCATTAAAGTGTCTG
257 CACACCC-CCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
25814 AAATGGGGACACTTTTTTCAAAT
320 AAATGGGGACACTTTTTTCAAAT
Statistics
Matches: 1818, Mismatches: 200, Indels: 155
0.84 0.09 0.07
Matches are distributed among these distances:
851 3 0.00
852 7 0.00
853 1 0.00
854 7 0.00
855 237 0.13
856 266 0.15
857 194 0.11
858 5 0.00
860 1 0.00
861 1 0.00
864 32 0.02
865 1 0.00
866 33 0.02
867 1 0.00
869 1 0.00
871 1 0.00
872 3 0.00
874 18 0.01
875 88 0.05
876 143 0.08
877 4 0.00
881 4 0.00
883 1 0.00
888 1 0.00
890 1 0.00
893 1 0.00
898 2 0.00
899 15 0.01
900 188 0.10
901 116 0.06
902 33 0.02
903 11 0.01
904 85 0.05
905 16 0.01
906 46 0.03
907 69 0.04
908 12 0.01
909 20 0.01
910 1 0.00
911 4 0.00
912 46 0.03
913 22 0.01
914 55 0.03
915 22 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGACGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCAGGGGGTGTGCGCACATGATGTAC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGCTTGCGCATCC
CGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTCCTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAGGATTGGTAGC
ACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCTGC
ACGCTCGTCTCTGTTGACTTAGGCATACGAGTTCACTT
Done.