Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168234.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25834
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:1664 original size:26 final size:26
Alignment explanation
Indices: 1628--1680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1618 CCGATCTGAT
1628 CTTACACTGGGAATGAACACCATATG
1 CTTACACTGGGAATGAACACCATATG
* * *
1654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACACCATATG
1680 C
1 C
1681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCATATG
Found at i:8234 original size:20 final size:20
Alignment explanation
Indices: 8209--8251 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
8199 CATGCTCGAG
8209 CCCAACATGTGCACCCGTAA
1 CCCAACATGTGCACCCGTAA
8229 CCCAACATGTGCACCCGTAA
1 CCCAACATGTGCACCCGTAA
8249 CCC
1 CCC
8252 TCGATCCGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.44, G:0.14, T:0.14
Consensus pattern (20 bp):
CCCAACATGTGCACCCGTAA
Found at i:8318 original size:26 final size:26
Alignment explanation
Indices: 8267--8319 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8257 CCGATTCGAT
* *
8267 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTAGGAATAAACTCCATATG
* *
8293 CTTAGACTAGGAATAAACTTCATATG
1 CTTACACTAGGAATAAACTCCATATG
8319 C
1 C
8320 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATAAACTCCATATG
Found at i:9712 original size:656 final size:656
Alignment explanation
Indices: 8433--9722 Score: 1890
Period size: 656 Copynumber: 2.0 Consensus size: 656
8423 GCTACGTAAC
* * ** * *
8433 CCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTTCGTACACCTAAGCCAACTGATGAAACGA
1 CCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTACACCTAAGCCAACCGATGAAACGA
* * * * * * * *
8498 GCGGGCGGGCGGGCACCACGTTGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATTGATAAGTTGG
66 GCGGACGGGCAGGCACCACGCTGACCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAAGGTGG
* *
8563 TAGGTGGTTTTAGGCACATATTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
131 TAGGTGGGTTTAGGCACATATTCATATTTTTGCCATCCCAATGCCATTTTTATGGCTTGTAAATT
*
8628 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTC
196 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACAACTCATTTTCTATTTTTC
* * * * *
8693 ATGATTTTTGAAAATTTTTATGGTTCGAGATTTTTTAAAAATTTTTTAGAAGGATTTTTGGCCCC
261 ACGATTTTTGAAAACTTTTACGGTTCAAGATTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCC
* * * *
8758 AAACTTGTTAGACATGATCCTTTTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCG
326 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATCCACAAAAAAATTCAGCAAAAAACTCG
**
8823 AAGTGTACAAGATTTTGTGACCAATTTAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
391 AAGTGTACAAGATTTTGCAACCAATTTAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
8888 GGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGG
456 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGG
* * * * *
8953 GATAGGGGGCCAATATAAGGGCCAAGTATAAGAACCCATCGCACATCATGTGCGCCCCACCCCCC
521 GACAGGGGGCCAATATAAGGGCCAAGTACAAGAACCCATCACACATCATGTGCGACACACCCCCC
* **
9018 GACCCCCAATTGCCAGAACCCCAATCCACCGGTCAGGTTCTCCGGTGATCTGCCAATCCTGCTGC
586 GACCCCCAATCGCCAGAACCCCAATCCACCAATCAGGTTCTCCGGTGATCTGCCAATCCTGCTGC
9083 CACAAT
651 CACAAT
**
9089 CCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA
1 CCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTACACCTAAGCCAACCGATGAAACGA
* *
9154 GCGGACGGGCAGGCACTACGCTGACCAGAGAGGAGGGATGCGCAAGTCGTGGATCGAT-AGCGTG
66 GCGGACGGGCAGGCACCACGCTGACCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAAG-GTG
* *
9218 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTCCCAATGCCATTTTTATGGCTTGTAAAT
130 GTAGGTGGGTTTAGGCACATATTCATATTTTTGCCATCCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
9283 TCATACATTGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTT
195 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACAACTCATTTTCTATTTTT
* ** *
9348 CACGA-TTTTGAAACCTTTTACGGTTCAAGATTTTTTTCAATTTTTTTCAGAAGGAGTTTTGGCC
260 CACGATTTTTGAAAACTTTTACGGTTCAAGATTTTTTAAAAATTTTTT-AGAAGGAGTTTTGGCC
* * * *
9412 CCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTCCATAAAAAAATTCAGCAAAAAACT
324 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATCCACAAAAAAATTCAGCAAAAAACT
*
9477 CGAAGTGTACAGGATTTTGCAACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
389 CGAAGTGTACAAGATTTTGCAACCAATTT-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
9541 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
453 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATG
* *
9606 AGGGACA-GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGC-ACACACCC
518 AGGGACAGGGGGCCAATATAAGGGCCAAGTACAAGAACCCATCACACATCATGTGCGACACACCC
** * * **
9669 CCCTTCCCCCCAATCGTC-GAAACCCGAATGCTGCCAATCAGGTTCTCCGGTGAT
583 CCC-GACCCCCAATCGCCAG-AACCCCAAT-CCACCAATCAGGTTCTCCGGTGAT
9723 GCTCCGGTGA
Statistics
Matches: 562, Mismatches: 66, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
654 10 0.02
655 103 0.18
656 449 0.80
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (656 bp):
CCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTACACCTAAGCCAACCGATGAAACGA
GCGGACGGGCAGGCACCACGCTGACCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAAGGTGG
TAGGTGGGTTTAGGCACATATTCATATTTTTGCCATCCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCACGGCAAGACAACTCATTTTCTATTTTTC
ACGATTTTTGAAAACTTTTACGGTTCAAGATTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCC
AAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATCCACAAAAAAATTCAGCAAAAAACTCG
AAGTGTACAAGATTTTGCAACCAATTTAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGG
GACAGGGGGCCAATATAAGGGCCAAGTACAAGAACCCATCACACATCATGTGCGACACACCCCCC
GACCCCCAATCGCCAGAACCCCAATCCACCAATCAGGTTCTCCGGTGATCTGCCAATCCTGCTGC
CACAAT
Found at i:11609 original size:26 final size:26
Alignment explanation
Indices: 11580--11632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11570 CCGATCTGAT
*
11580 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
11606 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
11632 C
1 C
11633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:11777 original size:894 final size:891
Alignment explanation
Indices: 9073--18754 Score: 11542
Period size: 869 Copynumber: 11.0 Consensus size: 891
9063 TGATCTGCCA
* * * **
9073 ATCCTGCTGCCA-CAATCCTCAGTCCGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCTAA
1 ATCCTGCTG-CAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
9137 GCCAACCGATGAAACGAGCGGACGGGCAGGCACTACGCTGACCAGAGAGG-AGGGATGCGCAAGT
65 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCA-GGATGCGCAAGC
* * * *
9201 CGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTCCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * *
9266 TTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACA
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * ** * *
9331 ACTCGTTTTCTATTTTTCACGA-TTTTGAAACCTTTTACGGTTCAAGATTTTTTTCAATTTTTTT
259 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
* * * *
9395 CAGAAGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTCCATAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* **
9460 AAATTCAGCAAAAAACTCGAAGTGTACAGGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
9525 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
9590 TTCTCAAGGTTTGATGAGGGACA-GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACAT
519 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * ** *
9654 CATGTGCACACACCCCCCTTCCCCCCAATCGTCGAAACCCGAATGCTGCCAATCAGGTTCTCCGG
584 CATGTGCGCACACCCCCC-ACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * * * *
9719 TGATGCTCCGGTGATGGTGCCCCGGGCCAAAAAAAAATGTGGCA-CAGCACAAGCTCGAGCCCAA
648 CGATGCTCTGGCGATGGTGCCCCGGG-CAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* ** * *
9783 CACGTGCACCCATAACCCTC-G---G---G----T--C----A-G---TCCG-AT-CTTACACGG
712 CATGTGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTTAGACTG
* * * ** * *
9825 GGAATGAACTCCGTATGCCTAAGTCATCCCATGAAACGAACGTGCGGATGCTCAACCGGCCAGAA
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* ** * * **
9890 GGGCAGGATGCGCAAGCCAGGGATATCTCGAGTCCCCCCTACATGCTGTCG
842 GGGCAGGATGCGCAAGCCGGGGATCGCT-GGGTCCCCCCTACGTGCTACCG
* * * * * * *
9941 ATCCTGCTACTGCAACCTTCAG-TCTGGTCCAATCTTAGACTGGGAATGAACTTCGTGTGCCTAA
1 ATCCTGCTGCAGCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * * *
10005 GCCAATCGACGGAACGAGCGGGCCAGCGGGCACTACGTCTGCTAGAGAGACAGGATGCGCAAGCC
65 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCC
* * *
10070 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCGTGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
10135 TTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA-TTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
10199 CTCGTTTTCGATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTGAAAATTCTTTC
260 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTC
* *
10264 AGAAGGAGTTTTTGCCCCAAACTTGGTAGACATGAT-CTTGTATTTTTGTTGGCATGCA-TAAAA
325 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
10327 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTTC
390 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC
*
10392 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
10457 TTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCCCAT
519 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
10522 CATGTGCGCACACCCCCCCCGCCCCCCCAATCGCTGGAACCCCAATGCCG-CTGGTCAGGTTCTC
584 CATGTGCGCACA--CCCCCC-ACCCCCCAATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * * * * *
10586 CGACGATGCTCTGGTGATGGTGCCCTGGACAAAAAAAAATGTGGCATCGGAACATGCCTGAGCCC
645 CGACGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** *
10651 AGCATGTGCACCTGTAACCCTCGGTTTGATCCGATCTTACACTGGGAATGAACTCCATATGCTTA
710 AGCATGTGCACCCGCAACCCTCGGTCCGAT-CGATCTTAC-CT-GGAATGAACTCCGTATGCTTA
* * ** * *
10716 GACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGAACACTCAGCCGAC
772 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
** * * * * *
10781 CAGAGGGGCAGGATGCGCAAGCCAAGGATATGTTCGGTCCCCCCTATGTGCTGCCG
837 CAGAGGGGCAGGATGCGCAAGCCGGGGAT-CGCTGGGTCCCCCCTACGTGCTACCG
* * * * *
10837 ATCCTGCTACCA-CAACCCTCGGTTC-AGTCCAATGTTAGATTGGGAATGAACTCCGTATGCCTA
1 ATCCTGCT-GCAGCAACCCTCAGTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
10900 AGCCAACTGACGAAACGAGCTGGCCGGCGAGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGC
64 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGC
* * * *
10965 CATGGATCGATAGGGTGGTAGGCGGGTTTTGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * *
11030 TTTCATGTCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * ** *
11095 ACTCATTTTCTATTTTTGATGA-TTTTGAAACTTTTTACGGTTCAGGATTTGGTTAAAATTTTTC
259 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
*
11159 CAGAAGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
11224 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
11289 AGACACTTTAATGGCTTCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
11354 TTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
11419 CATGTGCGCACACCCCCCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGT
584 CATGTGCGCACACCCCCCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * * *
11484 GATGCTCTGACGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGCCCTATCCCAGCA
649 GATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
11549 TGTGCACCCGCAACCCTCAGTCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
714 TGTGCACCCGCAACCCTCGGTCCGATC-GATCTTAC-CT-GGAATGAACTCCGTATGCTTAGACT
* * * * * * *
11614 GGGAATGAACTCCATATGCCTAAGTCAACCAATGAAACGAACGTGCAGGTGCTCAGCCGGCCATA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** *
11679 GGGGCAGGATGTACAAG-CGGAGGATCGACTGGGTCCCCCCTACGTGCTACTG
841 GGGGCAGGATGCGCAAGCCGG-GGATCG-CTGGGTCCCCCCTACGTGCTACCG
* * * * *
11731 ATCCTACTGTAGCAGCCCTCAGTTCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
11796 CCAACCGACGGAACGAGTGGGCGGGCGGGCACTACGTCGGCCAGAAAGG-AGGGACGCGCAAGCC
66 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCA-GGATGCGCAAGCC
* * *
11860 GTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCATCATATTT-TGTCATGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * * **
11924 TTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGACAAGATAA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
11989 CTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTTAAAAATTTTTT
260 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAAATTTTTT
* * * * *
12054 CAGAAGGGGTTTTGGCCCCACACTTGCTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
12119 GAATTTAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
12184 AGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
12249 TTCTCAAGGTTGGATGATTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
12314 CATGTGCACACACCCCCTCCACCCCCCAAT-GCCGGAACCCGAATGCCGTCGGTCAGGTTCTCCG
584 CATGTGCGCACA-CCCC-CCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-
* ** * * * * *
12378 GA-GATGCTCCGATGATGGTGCCTCGAGC-AAAAAAAATGCGGCACCAGCACATCCCCAAGCACA
646 GACGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
12441 GCATATGCACCCACAA-CC-C--T-CG---G---TT--C--G---G---TCCG-AT-CTTACACT
711 GCATGTGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTTAGACT
* * * * * *
12483 GGGAATGAACTCCGTATACCTAAGTCAACCTACGAAACGAGTGTGCGGACGCTCAGTCGACCAGA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * ** *
12548 GGGGCAGGATGCGTAGGCCGGGGATCAGC-CGGTCCCCTCTTGTGTGCTACCA
841 GGGGCAGGATGCGCAAGCCGGGGATC-GCTGGGTCCCC-CCTACGTGCTACCG
* * * * * *
12600 ATCCTACTACCA-CAACCCTC-GATCCAGTCCGATCTTAAACTGGGAATGAGCTCCGTATGCCTA
1 ATCCTGCT-GCAGCAACCCTCAGTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
12663 AGCCAACCGACGAAACAAACGGGCGGGCGGGCACTACGTCGGCTAGAGAGG-TGAGATGCGCAAG
64 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAG-GATGCGCAAG
* *
12727 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGTCA
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
12792 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAATTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * * * **
12857 TACTTGTTCTCTATTTTTCTTGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTTAAAATTTTT
258 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTT
* * * ** * *
12922 TCAGAAGGGGTTTTGGCCCCACACTTGCTAGATGTGATCCTCGTATTTTTGTTGGCATGCATAAA
323 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
12987 ATAATTCAGGTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAATAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
13052 CAAACACTTTAATGACTACTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGAGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
13117 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
13182 TCATGTGCGCACACCCCCTACCCCCCAATCACCGAAACCCTAATGCCGCCGGTCAGGTTCTCTGG
583 TCATGTGCGCACACCCCCCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * *
13247 CAATGCT-TCGGTGATGGTGCCCCGGGCGAAAAAATAGTGCGGCACCAGCACATGCCTGAGCCCA
648 CGATGCTCT-GGCGATGGTGCCCCGGGC-AAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
13311 GCATGTGCACTCGCAACCCTCGGTCCAATTTGATCTTACGCTGAGAATGAACTCCATATGCTTAG
711 GCATGTGCACCCGCAACCCTCGGTCCGA-TCGATCTTAC-CTG-GAATGAACTCCGTATGCTTAG
*
13376 -CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-CCAGCC
773 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
13439 AGAGGGGCAGGATGCGTATGTCGGGGATCGCTCGGGTCCCCCCTACGTGCTACCA
838 AGAGGGGCAGGATGCGCAAGCCGGGGATCGCT-GGGTCCCCCCTACGTGCTACCG
* ** * ** **
13494 ATCCTGTTGCCA-CAACTTTCAG-TCTATTTTGATCTTAGTTTGGGAATGAACTCCGTATGCCTA
1 ATCCTGCTG-CAGCAACCCTCAGTTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
13557 AGCCAACCGATGAAATGAGAGGGTGGGCGGGCACTACGCCGGCCAGAGAGGC-GTGATGCACAAG
64 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAG-GATGCGCAAG
* * *
13621 CCGTGGATCGATAGGATGG-AAGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTCA
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
13685 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
13750 GACTTGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACAGTTCGGGATATTTTTAAAATTTTT
258 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTT
*** * * * *
13815 TCAGAAGGAGTTTTGGCTTGAAAATTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAA
323 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
13880 AAAATGCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
13945 CAAACACTTTAATGGCTACTGACAGCAAACCTGTAAAAGCTCAAATGCTCTTTAA-AGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14009 GTTCCCAAGGTTTCATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14074 TCATGTGCGCACACCCCCC-CGCCCCCATTCGCTGGAACCCTAATGTCGCCGGTTAGGTTCTCCA
583 TCATGTGCGCACACCCCCCAC-CCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
14138 ACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAG
647 ACGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
14203 CATGTGCACCCACAA-CC-C--T-CG---G-TC-T---T-G--T---CT--G-AT-ATTAGACTG
712 CATGTGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
14245 GGAATGAACTTCGTATGCCTATGTGAATCCACGAAACGAGCGTCCGGGCGCTCAGCCGACTAGAG
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * *
14310 GGGCAGGATGCACAAGCCGGGGATCGACGGGGTCCACCCTACGTGCTATCG
842 GGGCAGGATGCGCAAGCCGGGGATCG-CTGGGTCCCCCCTACGTGCTACCG
* * ** * ** * **
14361 ATCTTGCTATC-GCAA-CCTTTGGTCTGATCTAATCTTTGAAAGGGAATGAACTCCGTATGCCTA
1 ATCCTGCT-GCAGCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * ** *
14424 AGCCAATCGATGAAACGAGAGGGCGGGCGGGCACTACGCCAGCTAGAGAGGTGGGATGTGCAAGC
64 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGC
*
14489 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* * * * * *
14554 TTTAAGGGCTTGTAAATTAACACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATGGCAAGATG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
14619 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTCCGATTCGGGATTTTTTTTAAATTTATT
259 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
* * *
14684 CAGAAGGAGTTTTTGGCCCCAAACTTGGTAGAGATGATCCTTGTATTTTTGTTGGCATACATAAA
324 CAGAAGGAG-TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
14749 AAACTTCAGCTAAAAACTAGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14814 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGTGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14879 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCA-CAACCAATCGCAC
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCAC
* * * * * *
14942 ATCATGTGCGTACACGCCCCTCTGCCCCCCTAATCGCCGGAACCCCAA-CCCATCAGTTAGGTTC
582 ATCATGTGCGCACAC-CCCC-C-ACCCCCC-AATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* ** * * * * *
15006 TCCGACCATGCTCCAGCGGTGGCTGCCCTGGGTGAAAAAAAAATGCAGCACCAGCACATGCCTGA
643 TCCGACGATGCTCTGGCGATGG-TGCCCCGGG-CAAAAAAAAATGCGGCACCAGCACATGCCCGA
* *
15071 GCCCATCATGTGCACCCACAACCCTCGGTCCG---G----T--CT-G-AT---CT---T-T-C--
706 GCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTT
* * * * *
15115 --ACTAGGGAATGAACT-CGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGACGCTCAGTCG
771 AGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
15177 GCCAGAGGGGCAAGATGCGTAA-CCTAGGGATATGTCT-GGTCCCCCATACATGCTGCTG
835 GCCAGAGGGGCAGGATGCGCAAGCC-GGGGAT-CG-CTGGGTCCCCCCTACGTGCTACCG
* * * * * * * * *
15235 ATCCTGTTGCCGTAACCCTCAGTCCGATCTGATCGTAGACAGGGAATGAACTCCATATGCCTAAA
1 ATCCTGCTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
15300 CCAATCGACGAAACGAGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACCGGATGCGCAAGCCG
66 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
*
15365 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGACATGCCAATGCCATTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
15430 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
15495 TTC-TTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTATTTT
261 -TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT-TTTT
15559 -AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
15623 ACATTCAGCTAAAAACTTGAAGTGTACAGTATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
* *
15688 CAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
15753 GTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
15818 TCATGTGCGCAGACCCCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-
583 TCATGTGCGC--A-CACCCCCCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * * * *
15882 CAAGCGATGCTCCGGTGATCGTGCCCTGGGC-AAAAAAAATACGACACCAGCATATGCCCGAG-C
645 CGA-CGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
15945 CATGCATGTGCACCCGTAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCATATGCT
709 CA-GCATGTGCACCCGCAACCCTCGGTCCGAT-CGATCTTAC-CT-GGAATGAACTCCGTATGCT
* *
16010 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCG
770 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * ** * *
16075 GCCAGAGGGGTAGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCCCTATGTATTTCCA
835 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGCT-GGGT-CCCCCCTACGTGCTACCG
* * * * * *
16134 ATCTTGCTGCTGCAATCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 ATCCTGCTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * ** *
16199 CGAACCGACAAAACGAGCGGGCGGGCGGGCATTATGCAGGCCAGATAGGTGGGATGCGCAAGCTG
66 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
* * * *
16264 TGGATTGATAGGGTGGTAGGTGGGTTTTGGCACATCGTCATATTTTTGCCATGCCAATGCCATTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
16329 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATCGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
16394 TCGTTTTCTATTTTTGATGATTTTTGAAACTTTTTATGGTTCGAGATTTGTTTAAAATTTTTCCA
261 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
* * *
16459 AAAGGGGTTTTGGCCCCAAACTTGTTAGACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAA
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
16523 ATTTAGCTAAAAACTTGAAGTGTACAGGATTTTGTAACCATTTGAAAAAAGTTTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16588 ACACTTTAATGGCTACTGGCAGCAAACCTAT-AAATCTCAAATGCTCTTTAAGAGGGTGTGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
16652 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
521 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * **
16717 TGTGCGCACACCCCCTCGTCCCCCCCAA-CACCTAAACGCCAATGCCACCGGTCAGGTTCTCCGA
586 TGTGCGCACACCCCC-C--ACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* **
16781 TGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATTAGGCACCAGCACATGCCCGAGCCCAGC
648 CGATGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
16846 ATGTGCAGCCGCAA--C-C-GT-CG---G----T--CT-G---G--C-CCG-AT-CTTACACTGG
713 ATGTGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
16888 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAGCTCAACCGACCAGA-G
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
16952 GGCAGGATGCGTAAGCCGGGGATCGGTCGGGACCCCCCTTACGTACTGCTG
843 GGCAGGATGCGCAAGCCGGGGATCGCT-GGGTCCCCCC-TACGTGCTACCG
* * ** * *
17003 ATCCTGCTGCTGCAACCCTTAG-TCTGATTTGAT-TTAAACTAGGAATGAACTCCGTATGCCTAA
1 ATCCTGCTGCAGCAACCCTCAGTTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
17066 GCCAACCGACGAAATGAGCGGGCGGGTGGGCACTACGCAGGCCAGAGAGACGGGATGCGCAAGCC
65 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCC
* * *
17131 ATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCCATGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
17196 TTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** **
17261 CTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTC
260 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTC
* * * * *
17326 AGAAGGCGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAA
325 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17391 CATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCG
390 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
17456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
455 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
17520 TCTCAAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
520 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
17585 ATGTGCGCACACCCCCCGTCCCCCCAATCGCC-G----CC---G-C--CGGTCAGGTTCTCCGAC
585 ATGTGCGCACACCCCCC-ACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * **
17639 GATGCT-TCGACGATGGTGCCCTGGGCAAAAAAAAAT-CTGGCACCAGCACATGTCTAAGCCCAG
649 GATGCTCT-GGCGATGGTGCCCCGGGCAAAAAAAAATGC-GGCACCAGCACATGCCCGAGCCCAG
* * * * *
17702 CATGTGCACCTGTAACCCTCGGTCCGGTCCAATTTTACACTGGGAATGAACTCCGTATGCTTAGA
712 CATGTGCACCCGCAACCCTCGGTCCGAT-CGATCTTAC-CT-GGAATGAACTCCGTATGCTTAGA
* * *
17767 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGCGCTCAACCGGCCA
774 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
17832 AAGGGGTAGGATGCGCAAGCCGAGGATCGGCCGTGTCCCCCCTACGTGCTGCCA
839 GAGGGGCAGGATGCGCAAGCCGGGGATC-GCTGGGTCCCCCCTACGTGCTACCG
* * * * * *
17886 ATCCTACTGCCGCAACCCTCGGTTTGATCCGATCGTAGACTGGGAATGAACT-CTTATGCCTAAG
1 ATCCTGCTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
17950 CCAACCGATGAAATGAGCGAGTGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCG
66 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
*
18015 TGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCACGCCAATGCCATTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
18079 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
196 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
18144 TCATTTTCTATTTTTCACGATTTTAGAAACTTTTTACAGTTCGGGAATTTTTTAAAATTTTTTCA
261 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
* * * * * *
18209 GAAAGAGTTTTGGCCCTAAACTTGGTAGACTTGATCGTTGTATTTTTGTTGGCATGCATAAAAAC
326 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
18274 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAG
391 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
18339 ACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
456 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
18404 CACAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCATATCA
521 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* **
18469 TGTGCGCACACCACCCC-CGCCCACAATCGTGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
586 TGTGCGCACACC-CCCCAC-CCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** * * * * *
18533 GTTGCTCCAGCGATGGTGCCCCAGGCAAAAAAAAAATGCGGCACTAGCACATGCTCGAGCCCTGA
649 GATGCTCTGGCGATGGTGCCCCGGGC-AAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
*
18598 ATGTGCACCCGTAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
713 ATGTGCACCCGCAACCCTCGGTCCGAT-CGATCTTAC-CT-GGAATGAACTCCGTATGCTTAGAC
* * * * *
18663 TGGGAATGAACTCCGTATGCC-AAGTCAACCCACGAAACCAGCTTACGGGTGCTCAGTCGGCCAG
775 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
18727 AGGGGTAGGATGCGCATGCCAGGGATCG
840 AGGGGCAGGATGCGCAAGCCGGGGATCG
18755 GCCGATCCCC
Statistics
Matches: 7615, Mismatches: 963, Indels: 447
0.84 0.11 0.05
Matches are distributed among these distances:
856 1 0.00
857 82 0.01
859 2 0.00
860 2 0.00
861 2 0.00
862 2 0.00
863 2 0.00
865 4 0.00
866 117 0.02
867 325 0.04
868 867 0.11
869 976 0.13
870 379 0.05
871 13 0.00
872 87 0.01
873 135 0.02
874 521 0.07
875 106 0.01
876 5 0.00
877 7 0.00
878 9 0.00
879 7 0.00
880 6 0.00
881 5 0.00
882 351 0.05
883 274 0.04
884 51 0.01
885 4 0.00
886 4 0.00
887 2 0.00
888 3 0.00
889 3 0.00
890 5 0.00
891 51 0.01
892 149 0.02
893 435 0.06
894 678 0.09
895 539 0.07
896 595 0.08
897 263 0.03
898 212 0.03
899 334 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATCCTGCTGCAGCAACCCTCAGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCACCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
TGCTCTGGCGATGGTGCCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCACCCGCAACCCTCGGTCCGATCGATCTTACCTGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
AGGATGCGCAAGCCGGGGATCGCTGGGTCCCCCCTACGTGCTACCG
Found at i:13383 original size:25 final size:26
Alignment explanation
Indices: 13345--13396 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
13335 CCAATTTGAT
13345 CTTACGCTGAGAATGAACTCCATATG
1 CTTACGCTGAGAATGAACTCCATATG
* *
13371 CTTA-GCTGGGAATGAACTCCGTATG
1 CTTACGCTGAGAATGAACTCCATATG
13396 C
1 C
13397 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACGCTGAGAATGAACTCCATATG
Found at i:16018 original size:26 final size:26
Alignment explanation
Indices: 15982--16034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972 CTGATCCGAT
15982 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
16008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
16034 C
1 C
16035 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:18659 original size:26 final size:26
Alignment explanation
Indices: 18630--18682 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18620 CCGATCCGAT
18630 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18682 C
1 C
18683 CAAGTCAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Done.