genome.fa.s41.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167866.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68447

Tables:   1   2   

This is table  1  of  2  ( 145 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1121	443	2.5	446	98	1	2182	37	18	14	28	1.90
2858--3068	106	2.0	105	95	0	377	40	19	21	18	1.92
12369--12677	163	1.9	163	93	0	537	36	13	21	28	1.92
17030--17127	50	2.0	50	87	2	144	32	32	10	24	1.89
17861--17885	12	2.1	12	100	0	50	48	0	0	52	1.00
18165--18208	21	2.1	21	82	0	52	36	0	4	59	1.18
18227--18270	23	1.9	23	81	9	54	45	2	2	50	1.27
18425--18504	20	4.0	20	80	11	74	50	1	0	48	1.08
18415--18506	15	6.2	15	76	17	77	50	1	0	48	1.08
18427--18506	30	2.7	29	83	9	90	50	1	0	48	1.08
18527--18570	19	2.4	19	80	3	54	52	0	2	45	1.13
18469--18597	57	2.2	57	80	14	140	47	1	2	48	1.24
18563--18641	18	4.3	18	70	20	58	46	2	1	49	1.23
19331--19375	23	1.9	24	86	13	67	48	0	0	51	1.00
19408--19464	29	2.0	29	80	12	66	45	5	0	49	1.24
19747--19800	20	2.8	20	74	2	56	44	0	3	51	1.19
19750--19822	18	4.0	18	73	7	58	47	0	2	49	1.15
20514--20556	13	3.4	13	84	15	63	46	4	0	48	1.22
20498--20578	27	3.1	25	81	12	92	44	3	0	51	1.19
20601--20653	19	2.8	19	86	11	65	32	0	1	66	1.03
20595--20653	28	2.1	29	83	3	75	32	0	3	64	1.10
20883--20931	24	2.0	24	85	14	66	51	2	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21160--21229	13	5.4	13	75	20	58	50	1	0	48	1.09
21182--21246	19	3.5	19	74	18	64	53	0	0	46	1.00
21182--21267	36	2.3	35	78	11	91	51	1	0	47	1.08
21278--21330	14	3.9	14	76	18	58	43	0	1	54	1.11
21359--21399	22	1.9	21	90	5	64	56	2	0	41	1.13
21505--21717	20	10.9	20	67	23	75	47	0	0	51	1.10
21535--21588	29	1.9	29	85	7	76	46	0	1	51	1.11
21606--21656	17	3.1	17	85	5	68	49	0	0	50	1.00
21648--21709	15	4.0	16	75	12	58	48	0	0	51	1.00
21614--21817	53	3.7	52	72	19	148	47	1	1	49	1.21
21783--21840	17	3.4	17	80	4	55	44	0	0	55	0.99
21995--22045	18	2.8	19	77	11	54	54	0	0	45	0.99
22278--22331	23	2.3	24	75	12	58	53	0	3	42	1.18
25473--25982	174	2.9	173	80	5	508	40	8	8	42	1.65
25580--26145	174	3.2	173	78	7	411	41	8	9	39	1.70
26172--26248	26	3.0	26	74	18	63	49	3	0	46	1.20
26534--26604	36	2.0	38	83	10	96	57	1	1	39	1.16
26583--26634	17	3.2	16	76	17	54	42	0	5	51	1.25
26602--26640	20	2.0	20	85	10	53	41	0	5	53	1.23
26653--26703	16	3.3	15	83	5	59	47	0	0	52	1.00
26641--26797	52	3.0	54	74	20	138	47	0	0	50	1.10
26703--26804	22	4.8	22	69	21	58	50	0	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26676--26780	37	2.8	37	76	13	90	47	0	0	50	1.14
26824--26918	29	3.3	28	75	15	88	53	2	0	44	1.12
26830--26870	13	2.7	16	75	25	52	48	0	0	51	1.00
26894--26923	15	2.0	15	93	0	51	63	0	0	36	0.95
26996--27034	19	2.0	21	85	10	55	43	2	2	51	1.29
27197--27246	22	2.3	21	80	6	55	48	0	2	50	1.12
27496--27531	18	2.0	18	88	0	54	69	2	13	13	1.30
27897--27949	24	2.2	25	83	10	65	79	0	5	15	0.91
27897--28063	34	5.1	33	67	15	96	75	3	5	15	1.12
27919--27987	20	3.5	20	75	20	65	75	1	7	15	1.09
27997--28062	22	2.9	22	82	14	73	74	6	3	16	1.15
28010--28064	23	2.5	22	77	16	51	74	3	5	16	1.15
28144--28203	23	2.7	23	82	10	63	73	6	5	15	1.22
28474--28504	16	1.9	16	100	0	62	83	3	6	6	0.88
29647--29716	8	9.2	8	76	20	53	68	4	5	21	1.28
29633--29717	29	3.1	29	77	17	110	69	5	4	20	1.28
29645--29717	7	9.9	7	72	21	51	68	4	5	21	1.27
29676--29717	17	2.6	16	78	10	50	69	2	4	23	1.20
29926--29984	26	2.3	26	76	5	66	76	3	11	8	1.13
30085--30131	18	2.7	17	81	12	60	82	0	6	10	0.82
30216--30270	19	2.9	19	82	12	60	78	5	3	12	1.06
30203--30261	20	2.9	20	77	10	66	76	5	5	13	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30278--30347	7	9.3	7	72	18	52	77	2	7	12	1.09
30803--30855	8	6.6	8	77	16	56	81	1	3	13	0.92
30780--30855	16	4.9	16	69	18	54	78	3	5	11	1.04
30803--30846	18	2.6	17	86	13	56	81	2	4	11	0.92
30889--30965	16	4.7	15	71	16	55	75	2	5	16	1.10
30941--30975	16	2.2	16	89	0	52	80	2	2	14	0.95
31429--31462	16	2.2	16	89	5	52	67	2	8	20	1.31
31556--31601	18	2.5	18	86	10	58	82	2	8	6	0.91
32070--32114	13	3.6	12	87	6	63	86	0	2	11	0.65
32091--32213	27	5.2	22	68	17	70	76	3	5	14	1.10
32072--32107	6	5.8	6	87	6	54	86	0	0	13	0.58
32071--32212	7	18.9	7	69	22	67	77	2	4	14	1.05
32511--32556	9	5.2	8	82	17	56	82	2	2	13	0.85
32511--32556	18	2.6	18	86	6	67	82	2	2	13	0.85
32509--32561	25	2.2	24	86	6	72	77	1	5	15	1.04
32614--32660	20	2.3	20	81	0	67	74	2	4	19	1.09
32758--32829	25	2.9	24	82	13	69	75	2	5	16	1.12
33215--33393	8	20.4	8	65	20	58	76	3	6	13	1.11
33215--33271	18	3.2	17	80	9	69	82	3	3	10	0.91
33215--33348	29	4.6	29	69	18	73	76	5	5	12	1.11
33214--33324	11	10.8	10	68	17	50	78	3	6	11	1.06
33355--33404	13	3.6	14	76	12	59	78	0	6	16	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33333--33405	8	8.0	9	72	18	53	75	0	6	17	1.02
33342--33405	27	2.3	28	89	5	94	75	0	7	17	1.04
33902--33943	8	5.2	8	85	0	57	83	0	4	11	0.79
33902--33959	24	2.5	23	88	2	80	81	0	8	10	0.89
34076--34127	23	2.3	21	76	23	52	71	5	7	15	1.29
34438--34508	31	2.3	30	74	11	72	74	4	7	14	1.18
34972--35024	22	2.4	21	77	22	56	75	5	13	5	1.16
35760--35886	23	5.7	21	70	15	76	75	4	3	16	1.10
35760--35886	22	5.7	20	71	19	74	75	4	3	16	1.10
35769--35854	20	4.2	19	71	19	57	75	5	2	16	1.10
35773--35886	53	2.2	53	82	6	133	76	4	3	15	1.09
35760--35886	7	17.0	7	68	16	69	75	4	3	16	1.10
35826--35894	23	3.0	22	78	17	70	76	1	5	15	1.04
35826--35895	21	3.1	22	74	22	65	75	1	5	17	1.06
36508--36549	15	2.7	16	88	3	59	76	0	9	14	1.02
36947--36997	6	8.5	6	79	14	52	80	0	3	15	0.86
36947--37117	17	9.1	18	70	16	80	77	4	5	12	1.10
36952--37022	29	2.4	28	77	11	72	78	4	4	12	1.03
36997--37041	20	2.3	20	85	11	58	77	8	4	8	1.10
37038--37078	19	2.1	20	86	4	57	78	7	4	9	1.10
37051--37122	30	2.5	29	78	17	78	76	2	8	12	1.11
37677--37733	17	3.3	17	83	11	80	82	7	3	7	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37876--37909	15	2.4	14	90	5	50	76	2	0	20	0.92
38120--38202	30	2.8	28	76	18	80	72	1	10	15	1.18
38164--38231	22	3.2	21	82	12	68	82	2	4	10	0.92
38181--38231	15	3.5	15	86	2	68	86	3	1	7	0.77
38181--38231	7	7.1	7	77	18	52	86	3	1	7	0.77
38593--38632	19	2.1	19	90	0	62	80	5	2	12	0.98
38623--38667	23	1.9	24	90	4	74	73	4	6	15	1.21
39109--39189	11	7.3	10	75	15	63	79	3	4	12	1.03
39109--39177	17	4.1	17	73	17	56	79	2	4	13	0.99
39695--39738	11	4.1	10	80	13	52	79	2	9	9	1.02

Tables:   1   2