Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168235.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25816
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Found at i:153 original size:17 final size:18
Alignment explanation
Indices: 122--163 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
112 CACAATTATT
*
122 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
140 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
157 AACTATT
1 AATTATT
164 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:260 original size:20 final size:19
Alignment explanation
Indices: 235--274 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
225 TTCATAATTA
235 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
255 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
274 A
1 A
275 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:460 original size:17 final size:16
Alignment explanation
Indices: 420--469 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
410 ATCTATACAG
420 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
435 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
449 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
467 TTA
1 TTA
470 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:1372 original size:16 final size:17
Alignment explanation
Indices: 1351--1383 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1341 TATTGATTTC
1351 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
1367 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
1384 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:1548 original size:15 final size:17
Alignment explanation
Indices: 1517--1548 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
1507 ACAAAAGATC
1517 ATAATGATTCTAAATAG
1 ATAATGATTCTAAATAG
1534 ATAAT-ATTC-AAATAG
1 ATAATGATTCTAAATAG
1549 CCCTAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.34
Consensus pattern (17 bp):
ATAATGATTCTAAATAG
Found at i:1549 original size:176 final size:178
Alignment explanation
Indices: 1329--1747 Score: 497
Period size: 180 Copynumber: 2.3 Consensus size: 178
1319 TATATGACTG
* * * *
1329 AACAAAAGGTAATATTGATTTCAAATAGATAATTATTGAAATAGCCATAATTATTTGAACTAATT
1 AACAAAAGGTCATAATGATTT-AAATAGATAATTATTCAAATAGCCATAACTATTTGAACTAATT
*** * *
1394 CTGTAAACAAAATCA-TTTTTTAAATCACTTG-TTAATTTTTGAAATATTAATAAATTACTATTA
65 AAATAAACAAAATAATTTTTTTAAA-CACTTGCTTAATTTTTGAAATATTAAGAAATTACTATTA
1457 TTTTAT-TTCGAATAAGCTTGTATGAACTGAAACAATTG-TTTTATGACAA
129 TTTTATCTT-GAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
* * * * **
1506 AACAAAAGATCATAATGATTCTAAATAGATAA-TATTCAAATAGCCCTAACTATTTAAATTTGTT
1 AACAAAAGGTCATAATGATT-TAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTAATT
* * *
1570 AAATAAACAAATTAATTTTTTTAAACTCTTGCTCATTAATTTTTGAAATATTAAGAAATTAGTAT
65 AAATAAACAAAATAATTTTTTTAAACACTTG--C-TTAATTTTTGAAATATTAAGAAATTACTAT
* * * *
1635 TATTTTATCTTGGATAAGCTTTTATGAACTGAAACAATTGTTTTTTTGTCAA
127 TATTTTATCTTGAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
* * * *
1687 AACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATAGTCACAACTATTTGAACT
1 AACAAAAGGTCATAATGA-TTTAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
1748 TGATTGGTAA
Statistics
Matches: 202, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
176 40 0.20
177 36 0.18
178 1 0.00
180 63 0.31
181 38 0.19
182 24 0.12
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
AACAAAAGGTCATAATGATTTAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTAATTA
AATAAACAAAATAATTTTTTTAAACACTTGCTTAATTTTTGAAATATTAAGAAATTACTATTATT
TTATCTTGAATAAGCTTGTATGAACTGAAACAATTGTTTTTATGACAA
Found at i:1934 original size:13 final size:13
Alignment explanation
Indices: 1918--1943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1908 GAATTTTGTT
1918 AAATAATTATAAA
1 AAATAATTATAAA
1931 AAATAATTATAAA
1 AAATAATTATAAA
1944 TATTTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATAATTATAAA
Found at i:3197 original size:17 final size:18
Alignment explanation
Indices: 3166--3207 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
3156 CACAGTTATT
*
3166 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
3184 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
3201 AACTATT
1 AATTATT
3208 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:3233 original size:13 final size:13
Alignment explanation
Indices: 3217--3241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3207 TTGTTATGTG
3217 ATATAATTATATT
1 ATATAATTATATT
3230 ATATAATTATAT
1 ATATAATTATAT
3242 AAATTTATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATAATTATATT
Found at i:3507 original size:17 final size:16
Alignment explanation
Indices: 3467--3516 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
3457 ATCTATACAG
3467 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
3482 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
3496 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
3514 TTA
1 TTA
3517 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:4424 original size:16 final size:17
Alignment explanation
Indices: 4403--4435 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
4393 TATTGATTTC
4403 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
4419 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
4436 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:6225 original size:17 final size:18
Alignment explanation
Indices: 6194--6230 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
6184 CACAGTTATT
*
6194 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
6212 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
6229 AA
1 AA
6231 CTTTTTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:7149 original size:18 final size:18
Alignment explanation
Indices: 7126--7167 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
7116 CACAATTATT
* *
7126 AATTATTACTTAAAAATA
1 AATTATTAATAAAAAATA
7144 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
7161 AACTATT
1 AATTATT
7168 TGTTATGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:8329 original size:16 final size:17
Alignment explanation
Indices: 8308--8340 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8298 TATTGATTTC
8308 AAATAG-ATAATTATTG
1 AAATAGCATAATTATTG
8324 AAATAGCCATAATTATT
1 AAATAG-CATAATTATT
8341 TGAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAGCATAATTATTG
Found at i:8549 original size:177 final size:178
Alignment explanation
Indices: 8187--8704 Score: 562
Period size: 177 Copynumber: 2.9 Consensus size: 178
8177 AAATAAATTT
* * * ** * *
8187 ATTTTTTAAATTTCTTACTTACTAACTTTTGAAAGGTTAATAAATTAGTGTTATTTTA-TTC-AG
1 ATTTTTTAAA-CTC-TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAT
** * * ** * * *
8250 AAGCTTGTATGATA-AAAAACAATTATTATATGACCGAACAAAAGGTAATATTGATTTCAAATAG
64 AAGCTTGTATGA-ACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAG
* * * * * *
8314 ATAATTATTGAAATAGCCATAATTATTTGAACTAATTCAGTAAACAAAATC
128 ATAATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATA
*
8365 ATTTTTTAAA-TC-ACTTATTAATTTTTGAAATATTAATAAATTACTATTATTTTATTTCGAATA
1 ATTTTTTAAACTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCG-ATA
*
8428 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTTAAATAGAT
65 AGCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGAT
* ** *
8493 AA-TATTCAAATAGCCATAACTATTTAAATTTGTTAAATAAACAAATTA
130 AATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATA
* * * *
8541 ATTTTTTTAAACTCTTGCTCATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATCTTGGA
1 A-TTTTTTAAACTC-TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TTCGA
* * *
8606 TAAGCTTTTATGAACTGAAACAATTGTTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATA
63 TAAGCTTGTATGAACTGAAACAATTG-TTTTATGACAAAACAAAAGGTCATAATGATTTTAAATA
* * * * *
8671 AATAATTGTTCAAATAGTCACAACTATTTGAACT
127 GATAATTATTCAAATAGCCATAACTATTTAAACT
8705 TGATTGGTAA
Statistics
Matches: 287, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
174 36 0.13
175 3 0.01
176 40 0.14
177 66 0.23
178 12 0.04
180 65 0.23
181 42 0.15
182 23 0.08
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (178 bp):
ATTTTTTAAACTCTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGATAA
GCTTGTATGAACTGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATA
ATTATTCAAATAGCCATAACTATTTAAACTAATTAAATAAACAAAATA
Found at i:8620 original size:180 final size:177
Alignment explanation
Indices: 8266--8704 Score: 531
Period size: 180 Copynumber: 2.5 Consensus size: 177
8256 GTATGATAAA
* * ** * * * *
8266 AAACAATTATTATATGACCGAACAAAAGGTAATATTGATTTCAAATAGATAATTATTGAAATAGC
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
* * * * * *
8331 CATAATTATTTGAACTAATTCAGTAAACAAAATCATTTTTTAAATCACTTATTAATTTTTGAAAT
66 CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAAT
*
8396 ATTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
131 ATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
*
8443 AAACAATTGTTTTATGACAAAACAAAAGATCATAATGATTTTAAATAGATAA-TATTCAAATAGC
1 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
* ** * *
8507 CATAACTATTTAAATTTGTTAAATAAACAAATTAATTTTTTTAAACTCTTGCTCATTAATTTTTG
66 CATAACTATTTAAACTAATTAAATAAACAAAATAA-TTTTTTAAA-TC--ACTCATTAATTTTTG
* * *
8572 AAATATTAAGAAATTAGTATTATTTTATCTT-GGATAAGCTTTTATGAACTG
127 AAATATTAAGAAATTACTATTATTTTAT-TTCGAATAAGCTTGTATGAACTG
* * * *
8623 AAACAATTGTTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATAG
1 AAACAATTG-TTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAG
* * *
8688 TCACAACTATTTGAACT
65 CCATAACTATTTAAACT
8705 TGATTGGTAA
Statistics
Matches: 222, Mismatches: 33, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
176 37 0.17
177 53 0.24
178 2 0.01
180 66 0.30
181 41 0.18
182 23 0.10
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (177 bp):
AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGC
CATAACTATTTAAACTAATTAAATAAACAAAATAATTTTTTAAATCACTCATTAATTTTTGAAAT
ATTAAGAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
Found at i:9500 original size:173 final size:176
Alignment explanation
Indices: 9068--9502 Score: 427
Period size: 173 Copynumber: 2.5 Consensus size: 176
9058 AATAGCGACC
* * ** *
9068 AATTGTCTATTTAAAATTGTTATGACCTTTCG-TTTGTCATAAAACAATTGTTTT-AGTTCATAC
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCA--ACATAC
*
9131 AAGCTTATTCAAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTAATAACTAAGTGATTT
64 AAGCTTATT--AAATAAAATAAAACTAATTTATTAATATTCCAAAAATT-ATAACTAAGAGATTT
* * **** * * * *
9196 AAAAAGTTAATTTTTTTATCGAATCAGTTCAAATAGTCATGTCCATTTGAAT
126 AAAAAATAAATCAGCTTACCAAATCAGTTCAAATAATCATGGCCA-TTGAAT
* * * * * ** *
9248 AGTTATCTATTTCAAATCGTTATGACCTTTTGTTTTTTCATAAAATAATTG-TTTCAGTATAAAA
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCAACATACAA
* * * *
9312 GCTTATGCAAAATAAAATAATACTACTTTATTAATATTTCAAAAA-T-TAA-TAAGAGATTTAAA
66 GCTTAT--TAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTATAACTAAGAGATTTAAA
* * *
9374 AAATAAATCAGCTTGCCAAATTA-TATCAAATAATTATGGCC-TTGAAT
129 AAATAAATCAGCTTACCAAATCAGT-TCAAATAATCATGGCCATTGAAT
* *
9421 AATTATCTATTTCCAATCATTATTACCTTTCGTTTTGTCATAAAACAATTGTTTTCCAACATACA
1 AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTT-CAACATACA
9486 AGCTTATTAAATAAAAT
65 AGCTTATTAAATAAAAT
9503 TGTTATTACC
Statistics
Matches: 209, Mismatches: 39, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
173 59 0.28
174 4 0.02
175 51 0.24
176 3 0.01
178 1 0.00
179 44 0.21
180 30 0.14
181 17 0.08
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (176 bp):
AATTATCTATTTCAAATCATTATGACCTTTCGTTTTGTCATAAAACAATTGTTTTCAACATACAA
GCTTATTAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTATAACTAAGAGATTTAAAAA
ATAAATCAGCTTACCAAATCAGTTCAAATAATCATGGCCATTGAAT
Found at i:10139 original size:17 final size:18
Alignment explanation
Indices: 10108--10149 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
10098 CACAGTTATT
*
10108 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
10126 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
10143 AACTATT
1 AATTATT
10150 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:11074 original size:17 final size:18
Alignment explanation
Indices: 11043--11084 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
11033 CACAGTTATT
*
11043 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
11061 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
11078 AACTATT
1 AATTATT
11085 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:11337 original size:14 final size:13
Alignment explanation
Indices: 11306--11346 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
11296 TGAATTATCT
11306 AATAA-AATA-TA
1 AATAACAATATTA
*
11317 TATAACAATAATTA
1 AATAACAAT-ATTA
11331 AATAACAATATTA
1 AATAACAATATTA
11344 AAT
1 AAT
11347 TCTTAGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 4 0.16
12 3 0.12
13 8 0.32
14 10 0.40
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAACAATATTA
Found at i:11393 original size:13 final size:13
Alignment explanation
Indices: 11375--11400 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11365 TAGTTATAAT
11375 TAATTTAATTAAA
1 TAATTTAATTAAA
11388 TAATTTAATTAAA
1 TAATTTAATTAAA
11401 ACAATTGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATTTAATTAAA
Found at i:11397 original size:935 final size:935
Alignment explanation
Indices: 9527--12309 Score: 5055
Period size: 935 Copynumber: 3.0 Consensus size: 935
9517 CTTTTTGTCA
*
9527 TAAAACAATTGATTTTCAACTTATAAACTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
* * *
9592 CAAGAATTAGTAAGAGATTTAAAAAATAAATTTATTTACCAAACCGGTTTAAATAATTATGACCA
66 CAAGAATTAGTAAAAGATTTAAAAAATAAATTAATTTACCAAACCGGTTTAAATAATTATAACCA
* *
9657 CTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAAT-AAAAAAGGCAT
131 GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
* * *
9721 ATAGATAATAATTATGATTTAAAACGTCAGATTTTGTTTCTGAACAATTTTGGGCTTAAAAACCA
196 ATAGATAATAATTATGATTTAAAACATCAGAATTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
*
9786 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTATTTCATACTTATTTGCTTTTAGATACA
261 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAGATACA
* *
9851 TTTTTAGGTGCTCTAAGAATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTAGAAAT
326 TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAAAT
*
9916 TTCAAATATTAGTATCTTATTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
391 TTCAAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
* *
9981 AATAGTTATGAATATTTGAATGCATTAACATAACCATATTTATTGTTATAAATAATTTTTAATTA
456 AATAGTTATGAATATTT-AATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTA
10046 GCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAAT
520 GCTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAAT
10111 TATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACAT
585 TATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACAT
10176 AATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAA
650 AATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAA
10241 AAATTAATATTTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAATTTGTCC
715 AAATTAATATTTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAATTTGTCC
10306 TGAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTA
780 TGAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTA
10371 ATAAAATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTAT
845 ATAAAATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTAT
10436 AATTAATTTAATTAAATAATTTTAAT
910 AATTAATTTAATTAAATAATTTTAAT
10462 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
10527 CAAGAATTAGTAAAAGATTTAAAAAATAAATTAATTTACCAAACCGGTTTAAATAATTATAACCA
66 CAAGAATTAGTAAAAGATTTAAAAAATAAATTAATTTACCAAACCGGTTTAAATAATTATAACCA
10592 GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
131 GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
10657 ATAGATAATAATTATGATTTAAAACATCAGAATTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
196 ATAGATAATAATTATGATTTAAAACATCAGAATTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
*
10722 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTGATACTTATTTGCTTTTAGATACA
261 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAGATACA
*
10787 TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATTATGGAATTTTTTGAAAT
326 TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAAAT
*
10852 TTCGAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
391 TTCAAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
10917 AATAGTTATGAATATTTAATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTAG
456 AATAGTTATGAATATTTAATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTAG
10982 CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAATT
521 CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAATT
11047 ATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATA
586 ATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATA
11112 ATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAAA
651 ATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAAA
11177 AATTAATATTTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAATTTTGTCC
716 AATTAATATTTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAA-TTTGTCC
11242 TGAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTA
780 TGAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTA
* *
11307 ATAAAATATATATAACAATAATTAAATAACAATATTAAATTCTTAGTTATAATCTATATAGTTAT
845 ATAAAATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTAT
11372 AATTAATTTAATTAAATAA-TTTAAT
910 AATTAATTTAATTAAATAATTTTAAT
11397 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
1 TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
*
11462 CAAGAATTAGTAAAAGATTTAAAAAATAAATTGATTTACCAAACCGGTTTAAATAATTATAACCA
66 CAAGAATTAGTAAAAGATTTAAAAAATAAATTAATTTACCAAACCGGTTTAAATAATTATAACCA
11527 GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
131 GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
*
11592 ATAGATAATAATTATGATTTAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
196 ATAGATAATAATTATGATTTAAAACATCAGAATTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
11657 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAGATACA
261 TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAGATACA
11722 TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAAAT
326 TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAAAT
*
11787 TTCAAATGTTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
391 TTCAAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
11852 AATAGTTATGAATATTTAATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTAG
456 AATAGTTATGAATATTTAATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTAG
*
11917 CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAATTATTAATT
521 CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAATT
*
11982 ATTAATTAAAAATAAATTATAAT-AAAAATAAACTATTTGTTATGTGATATAATTATATTACGTA
586 ATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATA
* *
12046 ATTATATAAATTTATAAGCAATCCAATAAATTTATTCATAATT---AA-TAA-AT-AA--TTAAA
651 ATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAAA
** *
12103 AATTAATA--TAAATCA----TAAAAATTAATAATTATATTATGAATAAAAGCTTTAAATTTGTC
716 AATTAATATTTAAAT-ATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTT-AATTTGTC
12162 CTGAGATCTTATATCTACTATTATCTAATTTATCATAAAT--A---AA-T----TT-AATTATCT
779 CTGAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCT
*
12216 AATAAAATATATATAATAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTA
844 AATAAAATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTA
12281 TAATTAATTTAATTAAATAATTTTAAT
909 TAATTAATTTAATTAAATAATTTTAAT
12308 TA
1 TA
12310 TCAATTAATT
Statistics
Matches: 1807, Mismatches: 36, Indels: 34
0.96 0.02 0.02
Matches are distributed among these distances:
910 90 0.05
911 10 0.01
915 1 0.00
916 2 0.00
919 1 0.00
921 78 0.04
922 2 0.00
924 5 0.00
925 1 0.00
926 13 0.01
928 2 0.00
929 2 0.00
930 3 0.00
931 2 0.00
934 81 0.04
935 1083 0.60
936 431 0.24
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (935 bp):
TAAAACAATTGATTTTCAACTTATAAGCTTATTTGAAACAAAATAATACTAATTTTTTAATACTT
CAAGAATTAGTAAAAGATTTAAAAAATAAATTAATTTACCAAACCGGTTTAAATAATTATAACCA
GTTCAAATAGTTATTACTATTTGAACAATTATCTATTTCAAATTATTATAAATAAAAAAAGCCAT
ATAGATAATAATTATGATTTAAAACATCAGAATTTGTTTCTGAACAATTCTGGGCTTAAAAACCA
TTCGCACAATTATTGCACGATTTTAATTTTTCATTGTGTTTCATACTTATTTGCTTTTAGATACA
TTTTTAGGTGCTCTAAGGATGTTGAGAATAAATAATAATTATCCAATGATGGAATTTTTTGAAAT
TTCAAATATTAGTATCTTGTTATTTAAAATTAAACAAATTGAAACTTAAATTAGAATAATATTCA
AATAGTTATGAATATTTAATGCATTGACATAACTATATTTATTGTTATAAATAATTTTTAATTAG
CTACTTAATAAATCAAATAATATATATATTTAACAAAATAGCTACAATTAACACAGTTATTAATT
ATTAATTAAAAATAAATTATAATAAAAAATAAACTATTTGTTATGTGATATAATTATATTACATA
ATTATATAAATTTATACGCTATCCAATAAATTTATTCATAATTAAAAATTAATATAAATCTTAAA
AATTAATATTTAAATATGTTTACCAATTAATAATTATATTCTGAATAAAAGCTTTAATTTGTCCT
GAGATCTTATATCTACTATTATCTAATTTATCATAAATAAATTTAATTCAAATTGAATTATCTAA
TAAAATATATATAACAATAATTAAATAAGAATATTAAATTCTTAGTTATAATCTATACAGTTATA
ATTAATTTAATTAAATAATTTTAAT
Found at i:12009 original size:16 final size:18
Alignment explanation
Indices: 11978--12018 Score: 59
Period size: 16 Copynumber: 2.4 Consensus size: 18
11968 CACAATTATT
11978 AATTATTAATTAAAAATA
1 AATTATTAATTAAAAATA
11996 AATTA-TAA-TAAAAATA
1 AATTATTAATTAAAAATA
*
12012 AACTATT
1 AATTATT
12019 TGTTATGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 12 0.57
17 4 0.19
18 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
AATTATTAATTAAAAATA
Found at i:12115 original size:20 final size:19
Alignment explanation
Indices: 12090--12129 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
12080 TTCATAATTA
12090 ATAAATAATTAAAAATTAAT
1 ATAAATAA-TAAAAATTAAT
*
12110 ATAAATCATAAAAATTAAT
1 ATAAATAATAAAAATTAAT
12129 A
1 A
12130 ATTATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAATAATAAAAATTAAT
Found at i:12318 original size:17 final size:16
Alignment explanation
Indices: 12278--12327 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
12268 ATCTATACAG
12278 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
12293 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
12307 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
12325 TTA
1 TTA
12328 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:13708 original size:22 final size:22
Alignment explanation
Indices: 13670--13711 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13660 GAATGTTAAT
*
13670 AATTAAAAGTTTTAAATATTTA
1 AATTAAAAGTTTAAAATATTTA
13692 AATTAAAA-TATTAAAATATT
1 AATTAAAAGT-TTAAAATATT
13712 ATTAGTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATTAAAAGTTTAAAATATTTA
Found at i:15065 original size:26 final size:26
Alignment explanation
Indices: 15036--15088 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15026 CCGATCCCAT
15036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15088 C
1 C
15089 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15365 original size:26 final size:26
Alignment explanation
Indices: 15327--15378 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15317 CCGGTCTGAT
15327 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
15353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
15379 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:16272 original size:26 final size:26
Alignment explanation
Indices: 16222--16274 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16212 CCGGTCCGAT
* *
16222 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTAGGAATGAAACTCGTATG
16248 CTTAGACTAGGAATG-AACTCGGTATG
1 CTTAGACTAGGAATGAAACTC-GTATG
16274 C
1 C
16275 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAACTCGTATG
Found at i:17173 original size:26 final size:26
Alignment explanation
Indices: 17122--17174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17112 CCAGTCCGAT
**
17122 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17148 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17174 C
1 C
17175 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:19244 original size:903 final size:901
Alignment explanation
Indices: 15317--21474 Score: 8301
Period size: 900 Copynumber: 6.9 Consensus size: 901
15307 CATGCTCGAG
* * * *
15317 CCGGTCTGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * * *
15382 AAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAATCAGCCAGAGGGGTGGGATGCGCAAGCCGA
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTG-
*** * * * * *
15447 GGATCGGTTGGGTGCCCCTCTGTGTGCTGCCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGAA
130 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* * * *
15512 ATTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAC-A------AGCGGGCGGGC
195 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGC
* * * * *
15570 GGGCATTACGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGTGTGGTAGGTGGGTT
260 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
15635 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
325 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
15700 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACAACACGTTTTTTATTTTTCACGATTTTTGA
390 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
* * *
15765 AACTTTTTGCGGTT-TGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTTCCCCAAACTTGGTA
455 AACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTA
* * *
15829 GACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
15893 GATTTTCTGACCATTTGAAAATACTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
15958 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCCAAGTTTGATGAGGCATAGGGGGA
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
16023 TAATATAAGGGCCAGGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGACCCCTCAG
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTC-G
* * * * * * *
16088 ATCGTCGAAAACCCAATGCCGTCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACG
778 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACG
* * *
16153 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGT
843 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
16212 CCGGTCCGATCTTAGACTGGGAATGAAATTCGTATGCTTAGACTAGGAATGAACTCGGTATGCCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** *
16277 AAGTCAACCCA-GAAAATGAACGTGCGGGCGCTCAACCGGCCAGAGGGGATGGATGCGCAAGCCA
66 AAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CT
* * ** * *
16341 GGGATCGACCGAGTCCCCCTCTGCATGCTATCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGA
129 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* * *
16406 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGA---GCGGACGGGCGGG
194 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGG
* *
16468 CGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
16533 TTAGGCACACCTTCGTATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
16598 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGGTTTTCA
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* *
16663 AAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGT
454 AAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGT
* * * *
16727 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGC-AAAAGACTCGAAGTGTAT
518 AGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAA-ACTCGAAGTGTAC
* * *
16791 GAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACATTTTAATGGCTACTGGCAGCAA
582 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* **
16856 ACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGCACTCGAGGTTTGATGAGGGATAGGGG
647 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
16921 GCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCC
712 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCC
* * *
16986 -CGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACT-ATGCTCCGGCGATGGTGCCCC
775 TCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGTGCCCC
* * * ** *
17049 GATGAAGAAAAATGCAGCACCAACACATGGTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
839 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
17112 CCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCAT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
17177 AAGTCAACCCACGAAACGATCGTGCTGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCATGTCGG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CTG
** * * * *
17242 GGATCGACCGGGTCCCCCTCTATGTG-TGGCTGATCCTGCTGCCACAACCCTCGGTCTGGTCCGA
130 GGATCGACCGGGTCCCCCTCTGCGTGCT-GCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGA
* * * ****
17306 TCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAACCTATGAAACGA---ATAAGCGGGCGGG
194 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGG
* * *
17368 CGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17433 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
17498 TCCCTTAAGCTTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * *
17563 AAACATTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
454 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTA
* * *
17628 GACGTGATCCTTATAATTTTGTTGGCCTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
17693 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
17758 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTCATGATGGATAGGGGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * ***
17822 AAATATAGGGGCCAAGTATTGGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCCCCC-CGA
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGA
* * * ** * * * **
17885 TCGCCGAAAGCCTAATGCTACCGGTCAAGTTCTCCGACGATGCTCCAACGATGGTGCCCCGGGGA
779 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
17950 AGAGAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTACTGCAACCCTCAGT
844 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
18008 TCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATACGCCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * ** *
18073 AAGTCAACCCACGAAATGAGCATACGGGCGCTTAGCCAGCCAGAGGGGTGACATGCGCAAGCCGG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CTG
** * * * * * * * **
18138 GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACTCTCAGCCCGATCCAAT
130 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* * *
18203 CTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGTCGGG
195 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGGCGGG
* * * *
18268 CGGGCGCTACGCCGGCCAGAGAGACGGGATGCACAACCCGTGGATCGGTAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
18333 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18398 TCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* * * *
18463 AAACATTATGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACATGGTG
454 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTA
* *
18528 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTTAGCTAAAAACTCGAACTGTACAA
519 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
18593 GAGTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAAC
584 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
18658 TTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGATGGATAGAGGGC
649 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
18723 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCAAGTGCGCACACCCCCTGGCCCCCTCGA
714 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGA
* * * *
18788 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATAATTCTCCGACGATGGTGCCCCGGCGA
779 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
18853 AAAAAAATACGGTACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
844 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
18911 CCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
18976 AAGTCAACCCACGGAACGAGCGTACGGGCGCTCAGCCGGGCAGAGGGGCAGGATGCGCAAGCTGG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGG
* * * *
19041 CGATCGACCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTACCGTAACCCTTGGTCTGGTCTGAT
131 -GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
* *
19106 CTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
195 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGGCGGG
* *
19171 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAACCCGTGGATCAATAGGGTGGTAGGTGGGT
259 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
19236 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATTG
324 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
19301 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
389 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
*
19366 AAA-TGTTATGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGT
454 AAACT-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGT
* *
19430 AGATGTGATCCTTGTATATTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
518 AGACGTGATCCTTGTAT-TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
19494 AAGAGTTTGTGACCATTTGAAAAAGGTATCCCCATTTCAGACACTTTAATCGCTACTGGTAGCAA
582 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
19559 ACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
647 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
19624 GCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACATCCCCCCGGCCCCCT
712 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCT
* * *
19689 --ATCGCCGGAACCCCAATGCCGCCGGTAAGGTTCTCC----A-------ACGAT-GCGCCCCAA
776 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * *
19740 CAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGAT
841 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
19801 CCGGTCCGATCTTAGACT--G-A-G-A------ATG---A-AC------T---CT--GTATGCCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
19840 AAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAG-TCG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-G
* * * * * * *
19904 AGGATTAGTA--GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGATCC
130 -GGA-TCG-ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCT
* * * *
19967 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGGGCGGGTGGGC
192 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGGC
* *
20032 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTACGTG
256 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * **
20097 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCACTTGTAAATTCATACAA
321 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
20162 TGGTCCTTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTT
386 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
20227 TTGAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCGAAACTT
451 TTAAAACTTTTTGCGGTTCA-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTT
* * * *
20291 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGTAGTGT
515 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
20356 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGC
580 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20421 AAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
645 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
20486 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC
710 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * *
20551 TCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-AGCGATGCTCCGGCGATGGAGCCCC
775 TCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGACGATGGTGCCCC
* * * *
20615 GACGAAGAAAAATACGGCACCAGCACATGCCCAACCCCAGCATGTGCTGCCACAACCCTCGGT
839 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* ** * *
20678 CCAGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAACGAACTTCGTATGCCT
1 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
20743 AAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCAG
66 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CTG
* * * * * * *
20808 GGATCGACCAGGTCCCCTTCTACGTGCTGCTGATCTTGC-AGCCGCAACCCTCGGTCTGTTCTAA
130 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTA-CCGCAACCCTCGGTCTGGTCTGA
* * * * *
20872 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACCCA-AAAACGAGTGGGC-GGCGGACGG
194 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCGGGCGG
* *
20935 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGG
258 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
21000 TTTAGCCACATCTTCATCTTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATATAATG
323 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
21065 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTC-CTGATTTT
388 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTT
* * * *
21129 TAAAACTTTTTGCGATTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
452 TAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGG
* * * * * *
21194 TAGACATGATCCTCGTATTTTTATTGGCATGCATAAAAAAATTCAACTAAAAACTCGAAGTGGAC
517 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
21259 AAGATTTTGTGTCCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGTAA
582 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
21324 GCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
647 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
21389 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCACCC-
712 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCT
*
21453 CGATCGCCAGAACCCCAATGCC
776 CGATCGCCGGAACCCCAATGCC
21475 CCGACGAAGA
Statistics
Matches: 4661, Mismatches: 518, Indels: 162
0.87 0.10 0.03
Matches are distributed among these distances:
863 19 0.00
864 634 0.14
865 38 0.01
866 3 0.00
869 2 0.00
875 2 0.00
876 5 0.00
877 78 0.02
879 4 0.00
880 1 0.00
881 1 0.00
882 1 0.00
885 1 0.00
886 1 0.00
887 1 0.00
888 4 0.00
890 77 0.02
891 6 0.00
892 2 0.00
894 1 0.00
895 201 0.04
896 316 0.07
897 9 0.00
898 1 0.00
899 362 0.08
900 1277 0.27
901 589 0.13
902 69 0.01
903 938 0.20
904 18 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGG
GATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATC
GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
Found at i:20719 original size:26 final size:26
Alignment explanation
Indices: 20688--20740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20678 CCAGTATGAT
*
20688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
20714 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
20740 C
1 C
20741 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:22413 original size:26 final size:26
Alignment explanation
Indices: 22384--22436 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22374 CCGATCTGAT
22384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22436 C
1 C
22437 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23466 original size:893 final size:892
Alignment explanation
Indices: 21631--23523 Score: 2871
Period size: 893 Copynumber: 2.1 Consensus size: 892
21621 TGAGCGTGCG
* * * *
21631 TGCTACCGATCCTGCTGCCGTAACCCTCGATCCGATTCGATCTTAAACTGGTAATGAACTCCGTA
1 TGCTACCAATCCTGCTGCCGCAACCCTCGATCCG-TTCGATCTTAGACTGGGAATGAACTCCGTA
* * *
21696 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGGCACTACATCGACCAGAGAGATGGG
65 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGGCACTACACCGACCAAAGAGACGGG
* * *
21761 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCGTGC
126 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
21826 CGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAT
191 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAT
* *
21891 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAA
256 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAA
*
21956 AATTTTTTTGGAGTGAGATTTTGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCAT
321 AATTTTTTTGGAGTGAGATTTTGCCCCAAACTTGGTAGACATGATCCTTGTACTTTTGTTGGCAT
* * * *
22021 GCATAAAACAATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACGATTTGAAAAAAATGTC
386 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTC
* * *
22086 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
451 CCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGG
22151 GGTGTGAGTTCTCAAGGTTTGATGAGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
516 GGTGTGAGTTCTCAAGGTTTGATGAGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * *
22216 TGCACATCATGTTCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCTCAATGCTGTCGGTCAGG
581 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGG
* * *
22281 TTCTCCGGCATGCTCCGACGATGGTGCCACGATGAAGAAAAATGTGGCACCAGCACATGCCTGAG
646 TTCTCCGACATGCTCCGACGATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG
* * * * *
22346 CCTAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
711 CCCAACATGTGCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGC
* * * * *
22411 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACAAAACGAGCGTACGGGCGCTCAGTC
776 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACCAGCGTACCGGCACTCAGTC
* *
22476 GGCCAGAAGGGCGGGATGCGCAAGAGGGGGATCGGCCTGGTCCCCCTCTACA
841 GGCCAGAAGGGCGGGATGCGCAAGACGGGGATCGGACTGGTCCCCCTCTACA
* ** * * * *
22528 TGCTACCGATCCTGCTGTTGCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCGTA
1 TGCTACCAATCCTGCTGCCGCAACCCTCGATCC-GTTCGATCTTAGACTGGGAATGAACTCCGTA
* * *
22593 TGGCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACACCGGCCAAAGAGACGGGATGC
65 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGACCAAAGAGACGGGATGC
* * *
22658 GTAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAAT
130 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
22723 GCTATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTGACGTGAAGTTTCATGGCA
195 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCA
* * * *
22788 AGAGGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
260 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATT
* *
22853 TTTTTGGAAG-GAG-TTTTATCCCCAAACTTGGTAGACATGATCCTTGTACTTTTTTTGGCATGC
325 TTTTTGG-AGTGAGATTTT-GCCCCAAACTTGGTAGACATGATCCTTGTACTTTTGTTGGCATGC
* *
22916 ACAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCC
388 ACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCC
22981 CATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGG
453 CATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGG
*
23046 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
518 TGTGAGTTCTCAAGGTTTGATGA-GAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
23111 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGT
582 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGT
* *
23175 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGGG
647 TCTCCGAC-ATGCTCCGACGATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG
* *
23240 CCCAACATGTGCTGCCGCAACCCTTGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
711 CCCAACATGTGCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGC
* * *
23305 TTAGACTAGGAATGAACTCTC-TATGCGTAAGTCAACCCGCGAAACCAGCGTACCGGCACTCAGT
776 TTAGACTAGGAATGAACTC-CGTATGCCTAAGTCAACCCACAAAACCAGCGTACCGGCACTCAGT
* * *
23369 CGGCCAG-AGGGCGGGATGTGCAAGTCGGGGATC-GATTAGGTCCCCCTCTACA
840 CGGCCAGAAGGGCGGGATGCGCAAGACGGGGATCGGACT-GGTCCCCCTCTACA
** * * * *
23421 TGCTGTCAATCCTACTGCCGCAACCATCGGTCCTGTTCGATCTTAGGCTGGGAATGAACTCCGTA
1 TGCTACCAATCCTGCTGCCGCAACCCTCGATCC-GTTCGATCTTAGACTGGGAATGAACTCCGTA
*
23486 TGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGC
65 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
23524 GGGCGGGCGG
Statistics
Matches: 897, Mismatches: 92, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
892 6 0.01
893 566 0.63
894 237 0.26
895 1 0.00
897 87 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGCTACCAATCCTGCTGCCGCAACCCTCGATCCGTTCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACCGACCAAAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAA
GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTT
TTTTGGAGTGAGATTTTGCCCCAAACTTGGTAGACATGATCCTTGTACTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
TCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGT
GAGTTCTCAAGGTTTGATGAGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTC
CGACATGCTCCGACGATGGTGCCACGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAA
CATGTGCTGCCGCAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACCAGCGTACCGGCACTCAGTCGGCCA
GAAGGGCGGGATGCGCAAGACGGGGATCGGACTGGTCCCCCTCTACA
Found at i:24839 original size:26 final size:26
Alignment explanation
Indices: 24810--24862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24800 CTGGTCCGAT
24810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24836 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24862 C
1 C
24863 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25310 original size:896 final size:894
Alignment explanation
Indices: 23535--25811 Score: 3114
Period size: 896 Copynumber: 2.5 Consensus size: 894
23525 GGCGGGCGGG
*
23535 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
23600 ACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATTGCTACTGGCAGCAAGCCTATAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
*
23665 CTCAAATGCT-TCTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 CTCAAATGCTCT-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAA
* * *
23729 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACATCCCCCGGCCCCCCCGATCGTCGAA
194 GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCGG-CCCCCCGATCGTCGGA
* *
23794 ACCCCAATGCCGCCGGTCAGGTTCT-C-CA-----G-CGATGGTGCCCAAGCAAAGAAAAATGTG
257 ACCCCAATGCCGTCGGTCAGGTTCTCCGCATGCTCGACGATGGTGCCCAAG--AAGAAAAATGAG
* * *
23851 GCACCAGCACATGCCCGAGCCCAGCATGTACTGCCACAACCCTCGGTCTGATCTGATCTGATCTT
320 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG----G-TCTGATCTT
* * *
23916 TGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCACG
380 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA
* * * * * * * *
23980 AGACGAGCGTGCGAGTGTTCAACCGGCCATA-GGGCGGGATGAGCAAGCTGGGGATCGGTCGGGT
445 AAACGAGCGTGCG-GCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCAGCCGGGT
* * * * * *
24044 CTCTCTTTGCGTGCTACTAATCCTGCTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAA
509 CTCCCCTTGCATGCTACCAATCCTGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAA
* * * *
24109 TGAGCTCCATATGCCTAAGCCTACCGACGAAAGTAGCGGGCGGGCGAGCGGGTGGGCACTACGCC
574 TGAACTCCATATGCCTAAGCCAACCGACGAAAGTAGCGGGCGGGCGAGCGAGCGGGCACTACGCC
* * * ** *
24174 GGCCAGAAAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTT
639 AGCCAGAAAGACGGGATGCACAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCACAACTT
*
24239 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTT
704 CATATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTT
* * * **
24304 CACGTGAAGTTTCATGGCAAGACAACTTTGTTTTCTATTTTCATGATTTGCGAAACTTTTTGTGG
769 CACGTGAAGTTTCATGGCAAGACAACTTCGTTTTCTATTTTCACGATTTGCAAAACTTTTTACGG
* * * * *
24369 TTCAGGATTTTTTAAAAATTTTTTGAAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATC
834 TTCAGGATTTTTTAAAAATTTTTTGAAAGAAGTTTTGGACCCAAACCTGGTAGACATCATC
24430 CTTGTATTTTT-TTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
24493 ACCATTTGAAAAAAGTGTCACCATTTGAAACACTTTAGTGGCTATTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
*
24558 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGACAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CAATATAAG
* *
24623 GGCCAAGTACCAGCACCCATC-AACATCATGTGTGCACACCCCCTGGCCCCCCGATCGCCGGAAC
195 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCC-GGCCCCCCGATCGTCGGAAC
24687 CCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCTGACGATGGTGCTCCAATGAAGAAAAATGA
259 CCCAATGCCGTCGGTCAGGTTCTCC-GC-ATGCTC-GACGATGGTGC-CCAA-GAAGAAAAATGA
*
24752 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGAC
319 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
24817 TGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACGCACAAAAC
384 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC
* * ** *
24882 TAGTGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCCGGGTC-CC
449 GAGCGTGC-GGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCAGCCGGGTCTCC
* *
24946 CCTTGCATGCTGCCAATCTTGCTACTGC-ACCCTCGGTCCAG-CCGATCTTAGACTGGGAATGAA
513 CCTTGCATGCTACCAATCCTGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
** * * *
25009 CTCGGTATGCCTAAGCCAACCGACGAAACG-A-CTGGGTGGGCGGGCGAGCGGGCACTATGCCAG
578 CTCCATATGCCTAAGCCAACCGACGAAA-GTAGC-GGGCGGGCGAGCGAGCGGGCACTACGCCAG
* * *
25072 CCAGAGAGACGGGATGCACAAGCCATGGATCGACATGGTGGTAGGTGGGTTTAGGCACATCTTCA
641 CCAGAAAGACGGGATGCACAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCACAACTTCA
** * * *
25137 TATTTCTATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCA
706 TATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
25202 CGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTG-AAAACTTTTTACGG
771 CGTGAAGTTTCATGGCAAGACAACTTCGTTTTCTA-TTTTCACGA-TTTGCAAAACTTTTTACGG
*
25265 TTC-GAGATTTTTT-AAAATTTTTTCGAAAGAAGTTTTGGACCCAAACTTGGTAGACATCATC
834 TTCAG-GATTTTTTAAAAATTTTTT-GAAAGAAGTTTTGGACCCAAACCTGGTAGACATCATC
* * *
25326 CTTGTATTTTTGTTGGCATCCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTT
1 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
25391 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGTTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
* *
25456 CTCAAATCCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAG
131 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC-AATATAAG
* * *
25521 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACACGCCC-CCAGCCCCCTATCATCGG
195 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAC-C-CCCGGC--CCCCCGATCGTCGG
* *
25585 AACCCCAATGCCGTCGGGCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCTGACGAAGAAAAA
256 AACCCCAATGCCGTCGGTCAGGTTCTCC-GC-ATGCT-CGACGATGGTGCCC--AAGAAGAAAAA
* * *
25650 TGCA-GCACCACCACATGTCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGT-TCGGTCTGATCT
316 TG-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCTGATCT
*
25713 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCA-
379 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
25777 AAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGG
444 AAAACGAGCGTGC-GGCGCTCAACCGGCCAGAGGG
25812 CACGA
Statistics
Matches: 1227, Mismatches: 118, Indels: 69
0.87 0.08 0.05
Matches are distributed among these distances:
891 43 0.04
892 17 0.01
893 178 0.15
894 12 0.01
895 33 0.03
896 281 0.23
897 40 0.03
898 281 0.23
899 48 0.04
900 34 0.03
901 185 0.15
902 70 0.06
903 4 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCGGCCCCCCGATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGCATGCTCGACGATGGTGCCCAAGAAGAAAAATGAGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTG
CGGCGCTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCAGCCGGGTCTCCCCTTGCAT
GCTACCAATCCTGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
GCCTAAGCCAACCGACGAAAGTAGCGGGCGGGCGAGCGAGCGGGCACTACGCCAGCCAGAAAGAC
GGGATGCACAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTACA
TGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACAACTTCGTTTTCTATTTTCACGATTTGCAAAACTTTTTACGGTTCAGGATTTTT
TAAAAATTTTTTGAAAGAAGTTTTGGACCCAAACCTGGTAGACATCATC
Found at i:25751 original size:26 final size:26
Alignment explanation
Indices: 25711--25763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25701 TCGGTCTGAT
*
25711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
25737 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
25763 C
1 C
25764 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Done.