Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168244.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25641
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.53
Found at i:2445 original size:349 final size:349
Alignment explanation
Indices: 1803--2479 Score: 870
Period size: 349 Copynumber: 1.9 Consensus size: 349
1793 AACGACTTGC
* * *
1803 AGTGTAGGGGGAATTAAGGATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTG
1 AGTGTAGGGGGAATTAAGGATTCTAAAGTTCTATGTGTGTAGCATTTAAGGATTAAAAATTTATG
** * *
1868 TGGTTGTGTATGGGAGTTTCCTTGTTGTTTTTCTCTTTGTGTTCTAAGCTAATGGCTTGCATGAT
66 TGGTTGTGTATGACAGTTTCCTTGTTGTTTTTCTCTCTGTG-T-T-AG---ATGGCTTGCA-GAG
* * * ** *
1933 TAGCTGAATTCAATTTCTGTGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTT
124 CAGCTGAATTCAATTTCTGTGCCTCATGTGTGTGTAGGTGTATTTAGGGAGGGTTTTATTTTGTT
* * * *
1998 GATTTCACTCTGTTACAGAACAGGTTGGTTTGTTGGGTTCAATTTTCTGAAACTTAATTTTGACA
189 GATTTCACTCTGTTACAGAACAGATTGGTTTGCTAGGTTCAATTTTCTGAAACTTAATTTTAACA
* *
2063 TGCATTGTGGTCAAATGTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAA
254 TGCATTGTGCTCAAATGCTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAA
2128 TATGTGTATGGGAGTTTCCTTGTTGCTTTGT
319 TATGTGTATGGGAGTTTCCTTGTTGCTTTGT
*
2159 AGTGTAGGGGGAATTAAGGATTCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTA
1 AGTGTAGGGGGAATTAAGGATTCTAAAGTTCTAT-G-TGTGTAGCATTTAAGGATTAAAAATTTA
2224 TGTGGCTGTGTGTATGACAGTTTCCTTGTTGTTTTTCTC-CT-TG-T-G-T-GCTT-CA-AGCAG
64 TGTGG-T-TGTGTATGACAGTTTCCTTGTTGTTTTTCTCTCTGTGTTAGATGGCTTGCAGAGCAG
* *
2281 -TGAATTCAATTTCTGTGCCTCTTGTGTGTGTAGGTATGTGTTTAGGGAGGGTTTTATTTTGTTG
127 CTGAATTCAATTTCTGTGCCTCATGTGTGTGTAGG--TGTATTTAGGGAGGGTTTTATTTTGTTG
* * * *
2345 GTTTCACTCTATTTGTTACAGGACAGATTGGTTTGCTAGGTTCAA-TTTCTGTAATTTAATTTTA
190 ATTTCACTC----TGTTACAGAACAGATTGGTTTGCTAGGTTCAATTTTCTGAAACTTAATTTTA
** *
2409 ACATGCATTGTGCTTGAATGCTTGAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCT
251 ACATGCATTGTGCTCAAATGCTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCT
2474 AAATAT
316 AAATAT
2480 ATGTTGTCAT
Statistics
Matches: 282, Mismatches: 29, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
344 32 0.11
345 3 0.01
346 31 0.11
347 2 0.01
348 4 0.01
349 83 0.29
350 28 0.10
353 1 0.00
355 1 0.00
356 32 0.11
357 1 0.00
358 33 0.12
359 2 0.01
360 29 0.10
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.44
Consensus pattern (349 bp):
AGTGTAGGGGGAATTAAGGATTCTAAAGTTCTATGTGTGTAGCATTTAAGGATTAAAAATTTATG
TGGTTGTGTATGACAGTTTCCTTGTTGTTTTTCTCTCTGTGTTAGATGGCTTGCAGAGCAGCTGA
ATTCAATTTCTGTGCCTCATGTGTGTGTAGGTGTATTTAGGGAGGGTTTTATTTTGTTGATTTCA
CTCTGTTACAGAACAGATTGGTTTGCTAGGTTCAATTTTCTGAAACTTAATTTTAACATGCATTG
TGCTCAAATGCTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGT
ATGGGAGTTTCCTTGTTGCTTTGT
Found at i:3290 original size:875 final size:875
Alignment explanation
Indices: 1301--8038 Score: 11432
Period size: 879 Copynumber: 7.7 Consensus size: 875
1291 TTAGGGTTAG
* *
1301 TCTAAATTTCCATGGTTGTGTACCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAG-
* *
1366 TTTCTTGTTGTTTTTCTCCTTGTGTGCTTCAAGAAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
65 TTTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
* *
1431 GTAGATATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGGCAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
* *
1496 GTTTACTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGCTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
1561 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
*
1626 GTCTTTTTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
*
1691 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTTGTTCTTCCTTTAGTGTGGTTTGTGATTCG
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGG-TGTTCTTCCTTTAGTGTGGTTTGTGATTCA
* * *
1756 TTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGGGGGAATTAAG
454 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAG
*
1821 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGTTGTGTATGGGAGTT
519 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
1886 TCCTTGTTGTTTTTCTCTTTGTGT-TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTC
584 TCC---TTGTTTTTCTCTTTGTGTCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTC
1950 TGTGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC-TGTTAC
646 TGTGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTTGTTAC
2014 AGAACAGGTTGGTTTGTTGGGTTCAATTTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
711 AGAACAGGTTGGTTTGTTGGGTTCAA-TTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
2079 GTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTT
775 GTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTT
*
2144 TCCTTGTTGCTTTGTAGTGTAGGGGGAATTAAGGAT
840 TCCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
**
2180 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGACAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
2245 TTCCTTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
66 TTCC-TGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
*
2310 GTAGGTATGTGTTTAGGGAGGGTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
* *
2375 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTAACATGCATTGTGCTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
2440 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
*
2505 GTCTTTTTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
* *
2570 GGCTTTGTAACTTTATTTTGGAAAATTCCTTGGGTTGTTCTTCCTTTAGTGTGGTTTGTGATTCG
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGG-TGTTCTTCCTTTAGTGTGGTTTGTGATTCA
* * *
2635 TTGGTCTCTATGAAACTTATGCGCTATGTGCTCCAAGAACGACTTGCAGTGTAGGGGGAATTAAG
454 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAG
*
2700 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGTTGTGTATGGGAGTT
519 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
*
2765 TCCTTATTTTTCTCTTTGTGT-TCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTGT
584 TCCTTGTTTTTCTCTTTGTGTCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTGT
2829 GCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC-TGTTACAGA
649 GCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTTGTTACAGA
2893 ACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAATGTTT
714 ACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAATGTTT
2958 AAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTTTCCT
779 AAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTTTCCT
*
3023 TGTTGCTTTGTAGTGTAGGGGGAATTAAGGAT
844 TGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
**
3055 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGACAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
3120 ATTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
66 -TTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
*
3185 GTAGGTATGTGTTTAGGGAGGGTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
3250 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
*
3315 GATTATTTCCTTTTGTTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
* **
3380 GTCTTTTTCATTGAGATTGTCTCTGGATTCTTCTCATGTCATTTTTAAA--TTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
*
3443 GGCTTTGTAACTTTACTTTGGAAAATTCCATGGGT-TT-TTCCTTTAGTGTGGTTTGTGATTCAT
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTGTTCTTCCTTTAGTGTGGTTTGTGATTCAT
*
3506 TGGTCTCTATGAAACTTATGCGCGATGTGCTTCGAGAATGACTTGCAGTGTAGGGGGAATTAAGG
455 TGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAGG
* *
3571 ATTCTAAAGTTGTATGTGTGTAAGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGAGAGTTT
520 ATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTTT
3636 CCTTGTTGTGTTTCTCTTTGTGTGCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTC
585 CCTTG-T-T-TTTCTCTTTGTGT-CTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTC
* *
3701 TGTGCTTGATGTGTGTGTAGGTGTCTTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGT
646 TGTGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC---TTGT
* *
3766 TACAGAACAAGTTGGTTTGTTGGGTTCAATTTCTAAAACTTAATTTTGACATGCATTGTGGTCAA
708 TACAGAACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAA
3831 ATGTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAG
773 ATGTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAG
3896 TTTCC---TTGTTTTGTAGTGTAGGGGGAATTAAGGAT
838 TTTCCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
*
3931 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGCGTGTATGGGAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAG-
3996 TTTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTC-T-TGTGT
65 TTTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
* *
4059 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTTACTCTATTTGTTACAGGGCAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
*
4124 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGCTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
4189 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
*
4254 GTCTTTCTTATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
4319 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTTGTTCTTCCTTTAGTGTGGTTTGTGATTCA
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGG-TGTTCTTCCTTTAGTGTGGTTTGTGATTCA
*
4384 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAAGGGGAATTAAG
454 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAG
*
4449 GATTCTAAAGTAGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
519 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
4514 TCCTTGTTTTTCTCTTTGTGTGCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTG
584 TCCTTGTTTTTCTCTTTGTGT-CTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTG
4579 TGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTA
648 TGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC---TTGTTA
* *
4644 CAGAACAGGTTGGTTCGTTGGGTTCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
710 CAGAACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
* *
4709 GTCTAAAAGGAAGATTATTTCCTTTTGCTGAATTCTTTGAAACTCTAAATATGTGTATGGGAGTT
775 GTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTT
* *
4774 TCCTTGTTGTTTTGTAGTGTAGGAGGAATTAAAGAT
840 TCCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
*
4810 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAGAAATTTATGTGGCTGTGTGTATGGGAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
* * * *
4875 TTCCCTATTATTTTTCTCCTTGTGTGCTTTAAGCAGTGAATTCAATTTTTGTGCCTCTTGTGT-T
66 TT-CCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
* *
4939 CGTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTTTATTTGTTACAGGGCAGATT
130 -GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATT
*
5004 GGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGTATTGTGGTTGAATGCTTGAAAGGA
194 GGTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGA
* *** *
5069 AGATTATTTCCTTTTGTTTTTTTATTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGG
259 AGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGG
5134 TGTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTA
324 TGTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTA
*
5199 GGGCTTTGTAACTTTACTTTGTAAAATTCCTT-GG-GTTCTTCCTTTAGTGTGGTTTGTGATTCA
389 GGGCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTGTTCTTCCTTTAGTGTGGTTTGTGATTCA
* *
5262 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGCAGAGGGAATTAAG
454 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAG
5327 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
519 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
* *
5392 TCCTTGTGTTTCTCTTTGTGTGCTCTAAGCTAGTGGCTTGCATGATTAGCTGAATTCAATTTCTG
584 TCCTTGTTTTTCTCTTTGTGT-CTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTG
* *
5457 TGCTTGA--TGTGTGTAGGTGTCTTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTA
648 TGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC---TTGTTA
*
5520 CAGAACAAGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
710 CAGAACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAAT
* *
5585 GTTTAAAAGGAAGGTTATTTTCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAG-T
775 GTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTT
* *
5649 T--TTCTTGTTTTGTAGTGTAGGGGGAATTAAAGAT
840 TCCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
* * *
5683 TTTAAATTTTTATGGTTGTCTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAG-
*
5748 TTTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTCT
65 TTTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
*
5813 GTAGGTATGTGTTTAGGTAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
5878 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
5943 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
6008 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
*
6073 GGCTTTGTAACTTTACTTTGGAAAATTCTTTGGGTTGTTCTTCCTTTAGTGTGGTTTGTGATTCA
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGG-TGTTCTTCCTTTAGTGTGGTTTGTGATTCA
*
6138 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAAGGGGAATTAAG
454 TTGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAG
*
6203 GATTCTAAAGTTGTACGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTT
519 GATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAG-T
6268 TTCTTCTTGTTTTTCTCTTTGTGTGCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTT
583 TTC--CTTGTTTTTCTCTTTGTGT-CTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTT
* *
6333 CTGTACCTAATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTG
645 CTGTGCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC---TTG
* *
6398 TTACAGAACAGGTTGGTTCGTTGGGTTCAATTTTTGAAACTTAATTTTGACATGCATTGTGGTCA
707 TTACAGAACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCA
6463 AATGTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGA
772 AATGTTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGA
*
6528 GTTTCCTTGTTGTTTTGTAGTGTAGGAGGAATTAAGGAT
837 GTTTCCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
* *
6567 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGAC--TGTGTATGGCAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
* * * *
6630 TTCCCTATTGTTTTTCTCCTTGTGTGCTTCAAGTAGTGAATTCAATTTTTGTGCCTCTTGTGTTT
66 TT-CCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
*
6695 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGGCAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
6760 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
*
6825 GATTATTTCCTTTTGTTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
*
6890 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTCGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
6955 GGCTTTGTAACTTTACTTTGGAAAATTCCTT-GG-GTTCTTCCTTTAGTGTGGTTTGTGATTCAT
390 GGCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTGTTCTTCCTTTAGTGTGGTTTGTGATTCAT
7018 TGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAGG
455 TGGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAGG
* *
7083 ATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTTGTTGTGTATGGGAGTTT
520 ATTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTTT
* * * *
7148 CCTTGTGTTTCTCTGTGTGTGCTTTAAGCTAATGACTTGCATGATTAGCTGAATTCAATTTCTGT
585 CCTTGTTTTTCTCTTTGTGT-CTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTGT
** * *
7213 GATTAATGTGTGTGTAGGTGTATTTTGAGAGTTTTTTGTTTTGTTGATTTCACTCTGTTTGTTAC
649 GCCTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTC---TTGTTAC
* * *
7278 AGAACAAGTTGGTTTGTTGGGTTCAATTTTTGAAACTTAATTTTGACATGCGTTGTGGTCAAATG
711 AGAACAGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAATG
7343 TTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCT-AA-ATGTGTATGGGAGTTT
776 TTTAAAAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTTT
7406 CCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
841 CCTTGTTGTTTTGTAGTGTAGGGGGAATTAAGGAT
7441 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
1 TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
* *
7506 TTCCTTGTTGTTTTTCTCTTTGTGTGCTTCAAGCAGTGAATTTAATTTCTGTGCCTC--GTGTGT
66 TTCC-TGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGT
7569 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
130 GTAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTG
* *
7634 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTAACATGCATTGTGGTTGAATGCTTAAAAGGAA
195 GTTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAA
*
7699 TATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
260 GATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGT
7764 GTCTTTCTCATTGAGATTGTCTCTGGATT-TTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
325 GTCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAG
*
7828 GGCTTTGT-A----ACTTTGGCAAAATTCCCTT-GG-GTTCAT--TTT-GTGTGG-TTGTGATCT
390 GGCTTTGTAACTTTACTTTGG-AAAATT-CCTTGGGTGTTCTTCCTTTAGTGTGGTTTGTGAT-T
* * * *
7882 GA-TGGTCTGTATGAAACTTAATGCGCTG-TGTGGTCCAAGAATGAC-T----TGTA-GGGGAAT
452 CATTGGTCTCTATGAAACTT-ATGCGC-GATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAAT
* *
7939 TATGGATTCTAAATTTGTATGGCTGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTCTGTG
515 TAAGGATTCTAAAGTTGTA----TGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGG--C--TG
*
8004 TGTATGTGAGTTTTCTTCTTGTTTTTCTCTTTGTG
572 TGTATGGGAG-TTTC--CTTGTTTTTCTCTTTGTG
8039 GCATGACAGA
Statistics
Matches: 5613, Mismatches: 189, Indels: 121
0.95 0.03 0.02
Matches are distributed among these distances:
861 24 0.00
862 4 0.00
865 34 0.01
866 24 0.00
867 29 0.01
868 11 0.00
869 17 0.00
870 167 0.03
871 3 0.00
872 19 0.00
873 528 0.09
874 569 0.10
875 606 0.11
876 1209 0.22
877 7 0.00
878 238 0.04
879 1221 0.22
880 4 0.00
881 466 0.08
882 357 0.06
884 76 0.01
ACGTcount: A:0.21, C:0.11, G:0.23, T:0.44
Consensus pattern (875 bp):
TCTAAATTTCTATGGTTGTGTAGCATTTAAGGATTAAAAATTTATGTGGCTGTGTGTATGGGAGT
TTCCTGTTGTTTTTCTCCTTGTGTGCTTCAAGCAGTGAATTCAATTTCTGTGCCTCTTGTGTGTG
TAGGTATGTGTTTAGGGAGGTTTTTATTTTGTTGGTTTCACTCTATTTGTTACAGGACAGATTGG
TTTGCTAGGTTCAATTTCTGTAATTTAATTTTGACATGCATTGTGGTTGAATGCTTGAAAGGAAG
ATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATATGTTGTCATAGGCTCTCAGTTGGTG
TCTTTCTCATTGAGATTGTCTCTGGATTCTTCTTGTGTCATTTTTAAATTTTTACATAAATTAGG
GCTTTGTAACTTTACTTTGGAAAATTCCTTGGGTGTTCTTCCTTTAGTGTGGTTTGTGATTCATT
GGTCTCTATGAAACTTATGCGCGATGTGCTCCGAGAATGACTTGCAGTGTAGGGGGAATTAAGGA
TTCTAAAGTTGTATGTGTGTAGGATTTAAGGATTAAAAATTTGTGTGGCTGTGTATGGGAGTTTC
CTTGTTTTTCTCTTTGTGTCTCTAAGCTAATGGCTTGCATGATTAGCTGAATTCAATTTCTGTGC
CTGATGTGTGTGTAGGTGTATTTTGGGAGTTTTTTGTTTTGTTGATTTCACTCTTGTTACAGAAC
AGGTTGGTTTGTTGGGTTCAATTTCTGAAACTTAATTTTGACATGCATTGTGGTCAAATGTTTAA
AAGGAAGATTATTTCCTTTTGCTGGATTCTTTGAAACTCTAAATATGTGTATGGGAGTTTCCTTG
TTGTTTTGTAGTGTAGGGGGAATTAAGGAT
Found at i:9829 original size:23 final size:22
Alignment explanation
Indices: 9803--9851 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
9793 TTTGTCTTTG
*
9803 ATTTTTTATATTGTTTTTTTATT
1 ATTTTTTATA-TGTTTTTTAATT
*
9826 ATTTCTTATATGTTTTTTAATT
1 ATTTTTTATATGTTTTTTAATT
9848 -TTTT
1 ATTTT
9852 GTATTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 11 0.48
23 9 0.39
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (22 bp):
ATTTTTTATATGTTTTTTAATT
Found at i:9977 original size:27 final size:26
Alignment explanation
Indices: 9921--9988 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 26
9911 TCAATTTGCC
9921 TTTTTTTATTTTTTATTTTTGATTCAT
1 TTTTTTTATTTTTTATTTTTGATT-AT
9948 TTTTTTTATTTTCTTACTTTTT-A-TAT
1 TTTTTTTATTTT-TTA-TTTTTGATTAT
9974 TTTTATTGTATTTTT
1 TTTT-TT-TATTTTT
9989 GTTTATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
26 6 0.16
27 16 0.43
28 10 0.27
29 5 0.14
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.78
Consensus pattern (26 bp):
TTTTTTTATTTTTTATTTTTGATTAT
Found at i:10005 original size:35 final size:34
Alignment explanation
Indices: 9922--10032 Score: 111
Period size: 37 Copynumber: 3.2 Consensus size: 34
9912 CAATTTGCCT
* *
9922 TTTTTTATTTTTTATTTTTGATT-CATTTTTTTTA
1 TTTTTTATTTTATATTTTT-ATTGTATTTTTTTTA
9956 TTTTCTTACTTTTTATATTTTTATTGTATTTTTGTTTA
1 TTTT-TTA--TTTTATATTTTTATTGTATTTTT-TTTA
* *
9994 TTTTATATTTTATA-TTTT-TTGTATTTTATTTA
1 TTTTTTATTTTATATTTTTATTGTATTTTTTTTA
10026 TCTTTTT
1 T-TTTTT
10033 TGTTTTGCTT
Statistics
Matches: 66, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
32 5 0.08
33 13 0.20
34 8 0.12
35 10 0.15
36 3 0.05
37 19 0.29
38 8 0.12
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (34 bp):
TTTTTTATTTTATATTTTTATTGTATTTTTTTTA
Found at i:10044 original size:19 final size:20
Alignment explanation
Indices: 10002--10092 Score: 53
Period size: 20 Copynumber: 4.5 Consensus size: 20
9992 TATTTTATAT
*
10002 TTTATATTTTTTGTATTTTA
1 TTTATATTTTTTGTATTTGA
* *
10022 TTTATCTTTTTTGT-TTTGC
1 TTTATATTTTTTGTATTTGA
* * *
10041 TTTAAAATTTTTTTCTTATTTTA
1 TTT-ATA-TTTTTT-GTATTTGA
* * *
10064 TTTTTATTTTTTAT-TTTGG
1 TTTATATTTTTTGTATTTGA
10083 TTTAT-TTTTT
1 TTTATATTTTT
10093 ATTTCTTTCT
Statistics
Matches: 53, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
18 5 0.09
19 13 0.25
20 15 0.28
21 12 0.23
22 2 0.04
23 6 0.11
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.76
Consensus pattern (20 bp):
TTTATATTTTTTGTATTTGA
Found at i:10074 original size:23 final size:23
Alignment explanation
Indices: 10047--10115 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
10037 TTGCTTTAAA
10047 ATTTTTTTCTTATTTTA-TTTTT
1 ATTTTTTTCTTATTTTATTTTTT
* **
10069 ATTTTTTATTTTGGTTTATTTTTT
1 ATTTTTT-TCTTATTTTATTTTTT
*
10093 ATTTCTTTCTCTATTTATATTTT
1 ATTTTTTTCT-TATTT-TATTTT
10116 CATAAATTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
22 7 0.19
23 9 0.25
24 14 0.39
25 6 0.17
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (23 bp):
ATTTTTTTCTTATTTTATTTTTT
Found at i:10743 original size:7 final size:7
Alignment explanation
Indices: 10731--10811 Score: 65
Period size: 7 Copynumber: 11.6 Consensus size: 7
10721 ATTTCTGTCT
10731 TTTTTTA
1 TTTTTTA
10738 TTTTTTA
1 TTTTTTA
*
10745 TTTTTGA
1 TTTTTTA
**
10752 TTCATTA
1 TTTTTTA
*
10759 TTTTTGA
1 TTTTTTA
10766 TTTTTTGA
1 TTTTTT-A
*
10774 CTTTTTA
1 TTTTTTA
*
10781 TATTTTA
1 TTTTTTA
*
10788 TATTTTA
1 TTTTTTA
*
10795 -TTTATA
1 TTTTTTA
*
10801 TTTTTTG
1 TTTTTTA
10808 TTTT
1 TTTT
10812 GCTTTAATAT
Statistics
Matches: 57, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
6 4 0.07
7 47 0.82
8 6 0.11
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:10811 original size:18 final size:19
Alignment explanation
Indices: 10736--10826 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 19
10726 TGTCTTTTTT
*
10736 TATTTTTTATTTTTGATTCA
1 TATTTTTTA-TTTTGATTTA
*
10756 TTATTTTTGATTTTTTGACTTTTTA
1 -TATTTTT--TATTTTGA---TTTA
*
10781 TATTTTATATTTT-ATTTA
1 TATTTTTTATTTTGATTTA
* *
10799 TATTTTTTGTTTTGCTTTAA
1 TATTTTTTATTTTGATTT-A
10819 TATTTTTT
1 TATTTTTT
10827 TCTTTTTTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 15
0.72 0.09 0.19
Matches are distributed among these distances:
18 15 0.27
19 3 0.05
20 9 0.16
21 8 0.14
22 11 0.20
23 1 0.02
24 6 0.11
25 3 0.05
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (19 bp):
TATTTTTTATTTTGATTTA
Found at i:10845 original size:23 final size:24
Alignment explanation
Indices: 10819--10866 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
10809 TTTGCTTTAA
* *
10819 TATTTTTTTCTTT-TTTTTATTTT
1 TATTTCTTTCTTTATTTATATTTT
10842 TATTTCTTTCTTTATTTATATTTT
1 TATTTCTTTCTTTATTTATATTTT
10866 T
1 T
10867 CATAAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (24 bp):
TATTTCTTTCTTTATTTATATTTT
Found at i:10855 original size:18 final size:19
Alignment explanation
Indices: 10790--10864 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 19
10780 ATATTTTATA
* * *
10790 TTTTATTTATATTT-TTTG
1 TTTTCTTTATTTTTATTTC
10808 TTTTGCTTTAATATTTT-TTTC
1 TTTT-CTTT-AT-TTTTATTTC
*
10829 TTTTTTTTATTTTTATTTC
1 TTTTCTTTATTTTTATTTC
*
10848 -TTTCTTTATTTATATTT
1 TTTTCTTTATTTTTATTT
10865 TTCATAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
18 23 0.49
19 9 0.19
20 5 0.11
21 10 0.21
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (19 bp):
TTTTCTTTATTTTTATTTC
Found at i:10912 original size:17 final size:17
Alignment explanation
Indices: 10891--10924 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10881 ATGTTTTGAA
*
10891 TTTTTTTATTTTTTTATC
1 TTTTTTT-TTTATTTATC
10909 TTTTTTTTTTATTTAT
1 TTTTTTTTTTATTTAT
10925 TGTTGTTGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTTTTATTTATC
Found at i:11069 original size:21 final size:21
Alignment explanation
Indices: 11028--11069 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 21
11018 TGCTTTCATA
* **
11028 TTTTCTTTTGTTTTCACTTTT
1 TTTTCTTTTGTTTTAAAATTT
11049 TTTTC-TTTGTTTTAAAATTT
1 TTTTCTTTTGTTTTAAAATTT
11069 T
1 T
11070 CTACAGAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.12, C:0.10, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTCTTTTGTTTTAAAATTT
Found at i:11474 original size:15 final size:15
Alignment explanation
Indices: 11451--11481 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11441 CATTTTTGTC
*
11451 TTTTTTTACTTTTTA
1 TTTTCTTACTTTTTA
11466 TTTTCTTACTTTTTA
1 TTTTCTTACTTTTTA
11481 T
1 T
11482 ATTTTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTCTTACTTTTTA
Found at i:12166 original size:23 final size:23
Alignment explanation
Indices: 12114--12166 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
12104 CTTATATGTT
*
12114 TTCATTTTTTGTATTTTTTCAAA
1 TTCATTTTTTGTATATTTTCAAA
* **
12137 TAT-ATTTTTTTTATATTTTCTCA
1 T-TCATTTTTTGTATATTTTCAAA
12160 TTCATTT
1 TTCATTT
12167 CATTTTTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
22 1 0.04
23 22 0.92
24 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.68
Consensus pattern (23 bp):
TTCATTTTTTGTATATTTTCAAA
Found at i:12898 original size:7 final size:7
Alignment explanation
Indices: 12888--12932 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
12878 TTTTGTCTTT
12888 TTTTTTA
1 TTTTTTA
12895 TTTTTTA
1 TTTTTTA
12902 TTTTCTTA
1 TTTT-TTA
*
12910 CTTTTTA
1 TTTTTTA
*
12917 TATTTTA
1 TTTTTTA
*
12924 TATTTTA
1 TTTTTTA
12931 TT
1 TT
12933 GCATTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:12914 original size:22 final size:23
Alignment explanation
Indices: 12889--12952 Score: 67
Period size: 24 Copynumber: 2.8 Consensus size: 23
12879 TTTGTCTTTT
*
12889 TTTTTATTTTT-TATTTTCTTAC
1 TTTTTATTTTTATATTTTATTAC
*
12911 TTTTTATATTTTATATTTTATTGC
1 TTTTTAT-TTTTATATTTTATTAC
* * *
12935 ATTTTATTTATATTTTTT
1 TTTTTATTTTTATATTTT
12953 GTTTTGCTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 7 0.20
23 13 0.37
24 15 0.43
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTTATTTTTATATTTTATTAC
Found at i:12914 original size:24 final size:25
Alignment explanation
Indices: 12887--12988 Score: 71
Period size: 28 Copynumber: 3.9 Consensus size: 25
12877 TTTTTGTCTT
12887 TTTTTTTATTTTTTATTTTCTT-AC
1 TTTTTTTATTTTTTATTTTCTTAAC
* * * * *
12911 TTTTTATATTTTATATTTTATTGCAT
1 TTTTTTTATTTTTTATTTTCTT-AAC
* *
12937 TTTATTTATATTTTTTGTTTTGCTTTAATA
1 TTT-TTT-TATTTTTTATTTT-C-TTAA-C
*
12967 TTTTTTTCTTTTTTATTTTCTT
1 TTTTTTTATTTTTTATTTTCTT
12989 TCTTTATTTA
Statistics
Matches: 59, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
24 19 0.32
26 6 0.10
27 3 0.05
28 22 0.37
29 4 0.07
30 5 0.08
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.75
Consensus pattern (25 bp):
TTTTTTTATTTTTTATTTTCTTAAC
Found at i:12990 original size:16 final size:16
Alignment explanation
Indices: 12965--13004 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
12955 TTTGCTTTAA
12965 TATTTTTTTCTTT-TT
1 TATTTTTTTCTTTATT
12980 TATTTTCTTTCTTTATT
1 TATTTT-TTTCTTTATT
12997 TATATTTT
1 TAT-TTTT
13005 CATAAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.27
16 7 0.32
17 6 0.27
18 3 0.14
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
TATTTTTTTCTTTATT
Found at i:13005 original size:19 final size:18
Alignment explanation
Indices: 12937--13004 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 18
12927 TTTATTGCAT
12937 TTTATTTATATTTTTTGT-
1 TTTATTTATATTTTTT-TC
*
12955 TTTGCTTTAATATTTTTTTC
1 TTT-ATTT-ATATTTTTTTC
*
12975 TTT-TTTAT-TTTCTTTC
1 TTTATTTATATTTTTTTC
12991 TTTATTTATATTTT
1 TTTATTTATATTTT
13005 CATAAATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
16 10 0.24
17 7 0.17
18 9 0.21
19 4 0.10
20 12 0.29
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTATTTATATTTTTTTC
Found at i:13625 original size:7 final size:7
Alignment explanation
Indices: 13615--13736 Score: 52
Period size: 7 Copynumber: 16.7 Consensus size: 7
13605 ATTTTTGTCT
13615 TTTTTTA
1 TTTTTTA
*
13622 TTTTTGA
1 TTTTTTA
13629 TTTTCTTA
1 TTTT-TTA
*
13637 CTTTTTA
1 TTTTTTA
*
13644 TATTTTA
1 TTTTTTA
*
13651 TATTTTA
1 TTTTTTA
13658 TTGTATTT-
1 TT-T-TTTA
*
13666 TATTTATA
1 T-TTTTTA
13674 TTTTTT-
1 TTTTTTA
* **
13680 CTTTTGC
1 TTTTTTA
**
13687 TTTAATA
1 TTTTTTA
13694 TTTTTT-
1 TTTTTTA
13700 TCTTTTTA
1 T-TTTTTA
13708 TTTTTTA
1 TTTTTTA
*
13715 TTTCTTTC
1 TTT-TTTA
13723 TTTATTTA
1 TTT-TTTA
13731 TATTTT
1 T-TTTT
13737 CATAAATTTT
Statistics
Matches: 85, Mismatches: 20, Indels: 19
0.69 0.16 0.15
Matches are distributed among these distances:
6 5 0.06
7 52 0.61
8 22 0.26
9 6 0.07
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.75
Consensus pattern (7 bp):
TTTTTTA
Found at i:13716 original size:21 final size:21
Alignment explanation
Indices: 13616--13725 Score: 80
Period size: 21 Copynumber: 5.1 Consensus size: 21
13606 TTTTTGTCTT
* *
13616 TTTTTATTTTTGATTTTCTTAC
1 TTTTTATTTTTTATTTT-TTTC
* *
13638 TTTTTATATTTTATATTTTATTG
1 TTTTTAT-TTTT-TATTTTTTTC
*
13661 TATTTTA-TTTATA-TTTTTTC
1 T-TTTTATTTTTTATTTTTTTC
** **
13681 TTTTGCTTTAATATTTTTTTC
1 TTTTTATTTTTTATTTTTTTC
*
13702 TTTTTATTTTTTATTTCTTTC
1 TTTTTATTTTTTATTTTTTTC
13723 TTT
1 TTT
13726 ATTTATATTT
Statistics
Matches: 68, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
19 3 0.04
20 11 0.16
21 28 0.41
22 10 0.15
23 6 0.09
24 10 0.15
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTTTATTTTTTATTTTTTTC
Found at i:14916 original size:32 final size:33
Alignment explanation
Indices: 14862--14931 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 33
14852 TTCTTATAGT
* ** * *
14862 TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCA
1 TTTTTATTGTTGCATTAACTTTTCTCGTTTTAA
*
14895 TTTTTATT-TTGCATTAACTTTTCTCTTTTTAA
1 TTTTTATTGTTGCATTAACTTTTCTCGTTTTAA
14927 TTTTT
1 TTTTT
14932 GTCTTTGAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 24 0.77
33 7 0.23
ACGTcount: A:0.11, C:0.11, G:0.06, T:0.71
Consensus pattern (33 bp):
TTTTTATTGTTGCATTAACTTTTCTCGTTTTAA
Found at i:15049 original size:7 final size:7
Alignment explanation
Indices: 15039--15143 Score: 61
Period size: 7 Copynumber: 14.7 Consensus size: 7
15029 ATTTTTGTCT
15039 TTTTTTA
1 TTTTTTA
15046 TTTTTTA
1 TTTTTTA
15053 TTTTTTA
1 TTTTTTA
*
15060 TATTTTA
1 TTTTTTA
*
15067 TATTTTA
1 TTTTTTA
*
15074 TTTATT-
1 TTTTTTA
*
15080 TTATTTA
1 TTTTTTA
15087 TATTTTT-
1 T-TTTTTA
* **
15094 TGTTTGC
1 TTTTTTA
**
15101 TTTAATA
1 TTTTTTA
*
15108 TTTTTTC
1 TTTTTTA
15115 TTTTTTA
1 TTTTTTA
*
15122 TTTCTTTC
1 TTT-TTTA
15130 TTTATTTA
1 TTT-TTTA
15138 TATTTT
1 T-TTTT
15144 CATAAATTTT
Statistics
Matches: 73, Mismatches: 20, Indels: 9
0.72 0.20 0.09
Matches are distributed among these distances:
6 7 0.10
7 48 0.66
8 16 0.22
9 2 0.03
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (7 bp):
TTTTTTA
Found at i:15050 original size:16 final size:16
Alignment explanation
Indices: 15039--15143 Score: 72
Period size: 19 Copynumber: 6.2 Consensus size: 16
15029 ATTTTTGTCT
15039 TTTTTTA-TTTTT-TA
1 TTTTTTATTTTTTATA
*
15053 TTTTTTATATTTTATA
1 TTTTTTATTTTTTATA
15069 TTTTATTTATTTTATTTATA
1 -TTT-TTTA-TTT-TTTATA
*
15089 TTTTTTGTTTGCTTTAATA
1 TTTTTTATTT--TTT-ATA
*
15108 TTTTTTCTTTTTTAT-
1 TTTTTTATTTTTTATA
* *
15123 TTCTTTCTTTATTTATA
1 TTTTTTATTT-TTTATA
15140 TTTT
1 TTTT
15144 CATAAATTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.09
15 13 0.18
16 9 0.12
17 12 0.16
18 10 0.14
19 17 0.23
20 6 0.08
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTTTATTTTTTATA
Found at i:15143 original size:25 final size:27
Alignment explanation
Indices: 15074--15143 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 27
15064 TTATATTTTA
* *
15074 TTTATTTTATTTATATTTTTTGTTTGC
1 TTTAATTTATTTATATTTTTTATTTGC
*
15101 TTTAATATT-TTT-TCTTTTTTATTT-C
1 TTTAAT-TTATTTATATTTTTTATTTGC
*
15126 TTT-CTTTATTTATATTTT
1 TTTAATTTATTTATATTTT
15144 CATAAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
23 2 0.06
24 4 0.11
25 9 0.26
26 10 0.29
27 8 0.23
28 2 0.06
ACGTcount: A:0.16, C:0.06, G:0.03, T:0.76
Consensus pattern (27 bp):
TTTAATTTATTTATATTTTTTATTTGC
Found at i:15417 original size:711 final size:717
Alignment explanation
Indices: 10087--22053 Score: 18375
Period size: 711 Copynumber: 16.8 Consensus size: 717
10077 TTTTGGTTTA
*
10087 TTTTTTATTTCTTTCTCTATTTATATTTTCATAAATTTTTATAATGTTTTGGAATTTTTTAATTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG-ATTTTTT-A-TT
* ** *
10152 TCTATCTTTTTTTTTTTTTTATTTATCGTTGTTGGTTATTTTCTGTTGTA-TTTTATAATTTTTC
63 T-T-TC----TTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTC
* *
10216 ATTAACTATTTTTCC-TTTAAA---AT-TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATAT
122 ATTAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATAT-T
* * *
10276 ATTTTTTTGTTTTCAC-TTTTTTCTTTGTTTTAAAAATTTCTATAAAAC----TTT-TTTTTATT
186 -TTCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATT
*
10335 TTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCACAAAAT
250 TTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAAT
* *
10400 TTTTTTTATTTCTTGTTTCCATTTTTTTTTTACA----CTTGGATTTTTTATTTTTCATAAATCT
315 TCTTTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCT
*
10461 TTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAAATTTTTTTTATTTTTTTATTTTC
380 TTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCAC-AAATTTCTTTTA-TTTTTTATTTTC
* * *
10526 ATTTTTAAATTCTTATA-TTTTTTTT-TTGCATTTTTTTTTTTGGTTTTCATTTTTATGTTGCAT
443 ATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCAT
10589 TAACTTTTCTCTTTTTTAATTTTTTGT-CTATGAATTTTTATATTGTTTTCTTATTATATCTTAT
508 TAACTTTTCTCTTTTTTAATTTTTTGTCCT-TGAATTTTTATATTGTTTTCTTATTATATCTTAT
* *
10653 ATGTTTTTCAATTTTTTGTATTTTTTAAAATA-TTTTTTCTATTTTTTCCTTTCATTTCATTTCA
572 ATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTA--TTTT-C--TCGTTTCATTTCA
10717 TTTCATTTCTGTCTTTTTTTATTTTTTATTTTTGATTCATTATTTTTGATTTTTTGACTTTTTAT
632 --T--TTT-TGTCTTTTTTTATTTTTTA-TTTT--TT-A-TA-TTTT-A-----T-A---TTT-T
10782 ATTTTATATTTTATTTATATTTTTTGTTTTGCTTTAATATTTTTTTC
675 A--TT-TATTTTATTTATATTTTTTGTTTTGCTTTAATA-TTTTTTC
* *
10829 TTTTTTTTATTTTTATTTCTTTCTTTATTTATATTTTTCATAAAATTTTATAATGTTTTGAATTT
1 -------T-TTTTTATTTCTTTCTTTATTTATA-TTTTCATAAATTTTTATAATGTTTTGGA-TT
* * ** *
10894 TTTTATTTTTTTATCTTTTTTTTTTATTTATTGTTGTTGGTTATTTTCTATTGTATTTCTATAAT
56 TTTTA---TTTT-TCTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAAT
10959 TTTTCATTAACTCTTTTTCCTTTTAAATTTTTCCTTTTTTTTTTACTTATTTTTTCATGTGCTTT
117 TTTTCATTAACTCTTTTTCCTTTTAAATTTTT-C-TTTTTTTTTACTTATTTTTTCATGTGCTTT
* * *
11024 CATATTTTCTTTTGTTTTCACTTTTTTTTCTTTGTTTTAAAATTTTCTACAGAACA---TTT-TT
180 CATATTTTCTTTTGTTTTCAC-TTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTT
*
11085 TTTATTTTATTTCATATTTTTGCCTTTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCG
244 TTTATTTTATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCG
* *
11150 TAAAATTCTTTTTATTTCTTGTTTCCAATTTTTTTTTTTACACTTCCTTGGATTTTTTATTTTTC
309 CAAAATTCTTTTTATTTCTTGTTTCC-A-TTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTC
* *
11215 ATAAATC--TTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTTACAAATTTTTTTTTATTTTT
372 ATAAATCTTTTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAA-TTTCTTTTATTTTT
* *
11278 TATTTTCATTTTTAAATTCTTATA-TTTTTTTTGTTGCATTTTCTTTTTTGGTATTCA-TTTTAT
436 TATTTTCATTTTTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTAT
*
11341 TTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCTTTGAATTTTTATATTGTTTTCTTATTATA
501 TTTGCATTAACTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATA
* * * **
11406 TCTTATA------T-ATTTTTTTCTATTTTCTC--AT-TTCATTTC-ATTTT-T-G--TC--TT-
566 TCTTATATGTTTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTC
* * *
11453 -TTTTT-AC--TTTTTATTTTCTTACTTTTTATATTTTATATTTTATTGTATTTTATTTACA-TT
631 ATTTTTGTCTTTTTTTATTTT-TTATTTTTTATATTTTATATTTTATT-TATTTTATTTATATTT
11513 TTTGTTTTGCTTTAATATTTTTGT-
694 TTTGTTTTGCTTTAATATTTTT-TC
* *
11537 TTTTCTTACTTTTCATCTTTCTTTAATTATATTTTCATAAATTTTTATACTGTTTTGGATTTTTT
1 TTTT-TTA---TT--TCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTT
* * * * *
11602 TATTTTTGTTTTCTTTTTTTATTTATCGCTGTTTCTTATTTTTTATTATATTTTTACAATTTTTC
59 TATTTTT-CTTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTC
*
11667 ATTAACTCTTTTTCCATTTAAA-TTTT-TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTT
122 ATTAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTT
*
11730 TCTTTTGTTTTCACTTTTTTT-TT-GTTTTAAAAATTTCTATAAAACA---TTT-TTTTTATTTT
187 TCTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTT
* *
11789 ATTTCATATTTTTGCATCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGTAAAATTC
252 ATTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTC
*
11854 TTTTTATTTCTTGTTTCCATTTTTTTTTTTACACTTCCTTGGATTTTTTATTTTTCATAAATCTT
317 TTTTTATTTCTTGTTTCCA-TTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTT
*
11919 TTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTT-ACAAATTTTTTTTATTTTTTATTTTCATT
381 TTGTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATT
* * *
11983 TTTAAATTCTTCATAGTTTTTTTTTTTTGGCATTTTCTTTTTTGCCTTTCCATTTTTA-TTTGCA
446 TTTAAATTCTT-ATAG-TTTTTTTTGTT-GCATTTTCTTTTTT-CGTTTTCATTTTTATTTTGCA
*
12047 TTAACTTTTGCTC-TTTTT-A-TTTTTATCCTTGAA-TTTTATATTGTTTTCTTATTATATCTTA
507 TTAACTTTT-CTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTA
* *
12108 TATG-TTTTC-ATTTTTTGTATTTTTTCAAATATATTTTTTTTATATTTTCTC-ATTCATTTCAT
571 TATGTTTTTCAATTTTTTGTATTTTTTC-AA-ATA-TTTTTTTCTATTTTCTCGTTTCATTTCA-
* * * *
12170 TTTTTTGTCCTTTTTTA-TTTTT-TTTTTGATATTTCCT-TACTTCATTTA---TATTTAT-TTT
632 -TTTTTGTCTTTTTTTATTTTTTATTTTTTATATTT--TATATTTTATTTATTTTATTTATATTT
*
12228 TTATATTTTGCTTTAATATTTTTTTC
694 TT-TGTTTTGCTTTAATA-TTTTTTC
12254 TTTTTTATTTCTTTC-TTATTTATA-TTTCATAAATTTTTATAATGTTTTGGA----TT-TTTTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
12312 C-TTCTTTTTTA-TTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
66 CTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
12375 TTTTCCTTTTAAATTTTTC-TTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTTGT
131 TTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTC-TTTTGT
*
12439 TTTCCACTTTTTTTCTTCGTTTTAAAAATTTCTAC-AAACATTTTTTC-TTTTATTTTATTTCAA
195 TTT-CACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCAT
*
12502 ATTTTTTGCCTCTTCA-TTTTTA-TTTTTCTTGTTTTTCTAATTTTTTTTGCAAAATTCTTTTTA
259 A-TTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTA
12565 TTTCTTGTTTCCATTTTTTTTT-ACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTT
323 TTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTT
*
12629 TCCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTT-TATTTTTATTTTCATTTTTAAA
388 TTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTAT-TTTTTATTTTCATTTTTAAA
12693 TTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTC
452 TTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTC
*
12758 TCTTTTTTAATTTTTTGTCTTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCA
517 TCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCA
* *
12823 ATTTTTTGTATTTTTTAAAATATTTTTTTCTATTTTCTCATTTCATTCATTTCATTTTTGTCTTT
582 ATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTC--GT--TTCATTTCATTTTTGTC--T
*
12888 TTTTTTATTTTTTATTTTCTTACTTTTTATATTTTATATTTTATTGCATTTTATTTATATTTTTT
641 TTTTTTATTTTTTA------T--TTTTTATATTTTATATTTTATT-TATTTTATTTATATTTTTT
12953 GTTTTGCTTTAATATTTTTTTC
697 GTTTTGCTTTAATA-TTTTTTC
12975 TTTTTTATTTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT-TTTT
1 TTTTTTA-TTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTT
13039 TCTTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
65 TC-TTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
13104 CTTTTTCCTTTTAAA-TTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTG
129 CTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTG
*
13168 TTTTCACTTTTTTTCTTTGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCAT
194 TTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCAT
13233 ATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTAT
259 ATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTAT
13298 TTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTT
324 TTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTT
13363 TCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTT-TATTTTTATTTTCATTTTTAAAT
389 TCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTAT-TTTTTATTTTCATTTTTAAAT
13427 TCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCT
453 TCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCT
*
13492 CTTTTTTAATTTTTTGTCTTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAA
518 CTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAA
* * *
13557 TTTTTTGCATTTTTTAAAATATTTTTTTCTATTTTCTCATTTCATTTCATTTTTGTCTTTTTTTA
583 TTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-----TT-
* *
13622 TTTTTGATTTTCTTACTTTTTATATTTTATATTTTATTGTATTTTATTTATATTTTTTCTTTTGC
642 TTTTT-ATTTT-TTATTTTTTATATTTTATATTTTATT-TATTTTATTTATATTTTTTGTTTTGC
13687 TTTAATATTTTTTTC
704 TTTAATA-TTTTTTC
*
13702 TTTTTATTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTATTGGATTTTTT
1 ------TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT
* *
13767 -TTTCT-TTTCTTTTTTTATTTATCGTTGTTTGTTATTTTCTATTGTA-TTTTAT-A-TTTTCAT
60 ATTTTTCTTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCAT
13827 TAA-TCTTTTTCC-TTT-AA-TTTTC---TTTTTTACTTATTTTTTTCATGTGCTTTCATATTTT
124 TAACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTA-TTTTTTCATGTGCTTTCATATTTT
* * *
13885 CTTTTCTTTTCACTTTTCTTCTTTGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTA
188 CTTTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTA
13950 TTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCT
253 TTTCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCT
14015 TTTTATTTCTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTT
318 TTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTT
14079 GTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTT
383 GTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC-TTTTATTTTTTATTTTCATTT
14144 TTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
447 TTAAATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
*
14209 TTTTCTCTTTTTTAATTTTTTGTCTTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTT
512 TTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTT
14274 TTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTT
577 TTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC--
*
14338 TTTTTTTATTTTCTTACTTTTTATATTTTATATTTTATTGTATTTTATTTATATTTTTTGTTTTG
640 TTTTTTTATTTT-TTATTTTTTATATTTTATATTTTATT-TATTTTATTTATATTTTTTGTTTTG
14403 CTTTAATATTTTTTTC
703 CTTTAATA-TTTTTTC
*
14419 TTTTTTTTTTTTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTTAT
1 ---TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGA-TTTTTTAT
14484 TTTTCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAA-TTTTCATT
62 TTTTC-TTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATT
14548 AA---------C-----------TCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCT
125 AACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCT
*
14593 TTTGTTTTCACTTTTTTTCTTTGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATT
190 TTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATT
14658 TCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTC-TT
255 TCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTT
14722 TTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGA-TTTTTATTTTTCATAAATCTTTTGT
320 TTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGT
14786 C-TTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATTTTTA
385 CTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATTTTTA
14850 AATTCTTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
450 AATTCTTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
*
14915 TTCTC-TTTTTAA-TTTTTGTCTTTGAATTTTTATATTGTTTTCTTATTATATCTTATATG-TTT
514 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTT
14977 TCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTT
579 TCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTT
15042 TTTATTTTTTATTTTTTATATTTTATATTTTATTTATTTTATTTATATTTTTTG-TTTGCTTTAA
644 TTTATTTTTTATTTTTTATATTTTATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTAA
15106 TATTTTTTC
709 TATTTTTTC
15115 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
15180 CTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
66 CTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
15245 TTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTT
131 TTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTT
*
15310 TTCACTTTTTTTCTTTGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATAT
196 TTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATAT
15375 TTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTT
261 TTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTT
15440 CTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTC
326 CTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTC
15504 ATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTT-TATTTTTATTTTCATTTTTAAATTC
391 ATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTAT-TTTTTATTTTCATTTTTAAATTC
15568 TTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCT
455 TTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCT
15633 TTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATT
520 TTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATT
15698 TTTTGTATTTTTTCAAATA-TTTTTTCTATTTTCTCGTTTCATTTCA-TTTTGTCTTTTTTTTAT
585 TTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-TTTTTTTAT
* * * *
15761 TTTTTATTTCTGAT-TTTCT-TA-CTT-TTTA-TAT-TTTATATTTTTTGTTTTGCTTTAATATT
649 TTTTTATTTTTTATATTT-TATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTAATATT
*
15820 TTTTT
713 TTTTC
15825 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT-TATTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTAT-TTT
15889 TCTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTA-TTTTATAA-TTTTCATTAAC
65 TC-TTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAAC
15952 TC-TTTTCCTTTTAAATTTTTC-TTTTTTTTACTTA-TTTTTCATGTGCTTTCATATTTTCTTTT
128 TCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTT
*
16014 GTTTTCACTTTTTTTCTTTGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCA
193 GTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCA
16079 TATTTTTGCCTCTTCATTTTTTA-TTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTA
258 TATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTA
16143 TTTCTTGTTTCCATTTTTTTTT-ACACTTCCTTGGATTTTTTATTTTTCATAAATC--TTGTCTT
323 TTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTT
16205 TTCATTTTTATTCTTTTCTTAA-TTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAA
388 TTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC-TTTTATTTTTTATTTTCATTTTTAAA
16269 TTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC-TTTC
452 TTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTC
16333 TCTTTTTTAATTTTTTGT-CTTGAA-TTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCA
517 TCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCA
16396 ATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTT
582 ATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-TTTTTT
* *
16461 TATTTTTTATTTTTTAT-TTTCT-TA-CTT-TTTA-TAT-TTTATATTTTTTGTTTTGCTTTAAT
646 TATTTTTTATTTTTTATATTT-TATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTAAT
16520 ATTTTTTTC
710 A-TTTTTTC
16529 TTTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT-TCAT
1 -TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTAT--T
16593 TTTCTTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAA
63 TTTC-TTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAA
16658 CTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTT
127 CTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTT
16723 TGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTC-TTTTATTTTATTTC
192 TGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTC
16787 ATATTTTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTT
257 ATATTTTTGCCTCTTCA-TTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTT
16852 TATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTC
321 TATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTC
*
16917 TTTCCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTA-TTTTTATTTTCA-TTTT-A
386 TTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATTTTTAA
16979 ATTCTTATAGTTTTTTTTGTTGCATTTTCTTATTTTTCGTTTTCATTTTTATTTTGCATTAAC-T
451 ATTCTTATAGTTTTTTTTGTTGCATTTTC-T-TTTTTCGTTTTCATTTTTATTTTGCATTAACTT
* *
17043 TTCTC-TTTTTAATTTTTTGTCTTTGAATTTTTATATTGTTTTCCTTATTATATCTTATATGCTT
514 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTT-CTTATTATATCTTATATGTTT
* *
17107 TTCAATTTTTTCTA-TTTTTCAAATA-TTTTTTCTATTTTCTCGTTTCATTTCATTTTTATCTTT
578 TTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTT
17170 TTTTATTTTTTATTTTCTTACT-TTTTATATTTTATATTTTATTGTATTTATTTATATTTTTT-T
643 TTTTATTTTTTATTTT-TTA-TATTTTATA-TTT-TA-TTTA---T-TTTATTTATATTTTTTGT
17233 TTTGCTTTAATA-TTTTTC
699 TTTGCTTTAATATTTTTTC
17251 -TTTTTA-TTCTTTC-TTATTTATA-TTTCATAAATTTTTATAATGTTTTTGGA-TTTTT-TTTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATG-TTTTGGATTTTTTATTTT
*
17310 TCTTTCTTTTTTATTTATCGTT-CTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTC
65 TCTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTC
*
17374 TTTTTCCTTTCAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTC-TTTGT
130 TTTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGT
17438 TTTCAC-TTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATA
195 TTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATA
17502 TTTTTGCCTCTTCATTTTTTATTTTTT-TT-TTTTTCTAATTTTTTTCGCAAAATTCTTTTTATT
260 TTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATT
17565 TCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTT
325 TCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTT
17630 CA-TTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTA-TTTTTATTTTCATTTTTAAATTC
390 CATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATTTTTAAATTC
17693 TTATAGTTTTTTTTGTTGCATTTTC-TTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTC-
455 TTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCT
17756 TTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATT
520 TTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATT
17821 TTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATT
585 TTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATT
* *
17886 TTTTATTTTCT-TA----CT-TTTTA--TA---T-TTTATA-TTTTTGTTTTGC-TTAATATTTT
650 TTTTATTTTTTATATTTTATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTAATATTTT
17937 TTC
715 TTC
17940 TTTTTTTCTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG-------A
1 ----TTT-TTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTA
17998 --------T-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTA
61 TTTTTCTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTA
18054 ACTCTTTTTCCTTTTAAATTTTTCTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCT
126 ACTCTTTTTCCTTTTAAATTTTTC-TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCT
18119 TTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATT
190 TTTGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATT
18184 TCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTT
255 TCATATTTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTT
18249 TTATTTCTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGT
320 TTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGT
18313 CTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTT-TATTTTTATTTTCATTTTT
385 CTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTAT-TTTTTATTTTCATTTTT
18377 AAATTCTTATAGTTTTTTTTTGTTGCATTTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
449 AAATTCTTATAG-TTTTTTTTGTTGCA-TTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAAC
18442 TTTTCTC-TTTTTAATTTTTTGTCCTTGAA-TTTTATATTG-TTTCTTATTATATCTTATATG-T
512 TTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTT
18503 TTTCAATTTTTTGTA-TTTTTCAAATA-TTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTT
577 TTTCAATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTT
* * *
18566 TTTTTAATTTTTTA-TTTTT-GA-TTT-T-CTTTACTTT-TTATATTTATATTTTTTGTTTTGCT
642 TTTTT-ATTTTTTATTTTTTATATTTTATATTTTA-TTTATTTTATTTATATTTTTTGTTTTGCT
18625 TTAATATTTTTTC
705 TTAATATTTTTTC
18638 TTTTTTTATTTCTTTCTTTATTTATATTTTCAT-AATTTTTATAATGTTTTGGATTTTTTATTTT
1 -TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTT
18702 TCTTTTCTTTTTTTATTTATCGTTG-TTCTTATTTTCTATTGTA-TTTTATAA-TTTTCATTAAC
65 TC-TTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAAC
18764 TCTTTTTCC-TTTAAATTTTTCTTTTTTTTTTTAACTTATTTTTTCATGTGCTTTCATATTTTCT
128 TCTTTTTCCTTTTAAATTTTTC--TTTTTTTTT-ACTTATTTTTTCATGTGCTTTCATATTTTCT
18828 TTTGTTTTCACTTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACA-TTTTTCTTTTTATTTTAT
190 TTTGTTTTCAC-TTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTAT
18892 TTCATATTTTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCT
254 TTCATATTTTTGCCTCTTCA-TTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCT
18957 TTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTT
318 TTTTATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTT
19022 GTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTT
383 GTCTTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC-TTTTATTTTTTATTTTCATTT
19087 TTAAATTCTTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAA
447 TTAAATTCTTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAA
19152 CTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGT
511 CTTTTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGT
19217 TTTTCAATTTTTTGTATTTTTTCAAATATTTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC
576 TTTTCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC
* *
19282 TTTTTTTATTTTTTA-TTTTTAT-TTTCT-TA-CTT-TTTA-TAT-TTTATATTTTTTGTTTTGC
640 TTTTTTTATTTTTTATTTTTTATATTT-TATATTTTATTTATTTTATTTATATTTTTTGTTTTGC
19340 TTTAATATTTTTTC
704 TTTAATATTTTTTC
19354 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGG-------A-----
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
19407 ---T-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAA-TTTTCATTAACTCT
66 CTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
19467 TTTTCCTTTTAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTG
131 TTTTCCTTTTAAATTTTTC--TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTG
19532 TTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCAT
194 TTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCAT
19597 ATTTTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTA
259 ATTTTTGCCTCTTCA-TTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTA
19662 TTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTT
323 TTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTT
19727 TTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTAAA
388 TTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC-TTTTATTTTTTATTTTCATTTTTAAA
19792 TTCTTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTT
452 TTCTTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTT
19857 CTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTG-TTTCTTATTATATCTTATATGTTTTTC
516 CTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTC
19921 AATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTT
581 AATTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTT
* *
19986 TATTTTTTCATTATTTT-TATTTCT-TA-CTT-TTTA-TAT-TTTATA-TTTTTGTTTTGCTTTA
646 TATTTTTT-ATT-TTTTATATTT-TATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTA
20044 ATATTTTTTTC
708 ATA-TTTTTTC
20055 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
20120 CTTT-TCTTTTTATTTATC---G-----T-TTTTCTATTGTATTTTTATAA-TTTTCATTAACTC
66 CTTTCT-TTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTC
20174 TTTTTCCTTTTAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTT
130 TTTTTCCTTTTAAATTTTTC--TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTT
*
20239 GTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTATTTTTATTTTATTTCA
193 GTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCA
20304 TA-TTTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTTCGCAAAATTCTTTT
258 TATTTTTGCCTCTTCA-TTTTTTATTTTTTCTTGTTTTTCTAA-TTTTTTTCGCAAAATTCTTTT
20368 TATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTC
321 TATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTC
20433 TTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTT-TATTTTTATTTTCA-TTTTA
386 TTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTAT-TTTTTATTTTCATTTTTA
20496 AATTCTTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
450 AATTCTTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
20561 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTT
514 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTT
20626 TCAATTTTTTTGTA-TTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTT
579 TCAA-TTTTTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC-TT
* ** * *
20690 TTTTTATTTTTGATTCATTAT-TTTTATTTTCTTACTTT-TTATATTT-TATATTTTTGTTTTGC
642 TTTTTATTTTTTATTTTTTATATTTTATATT-TTA-TTTATTTTATTTATAT-TTTTTGTTTTGC
*
20752 TTTAATATTTTTTT
704 TTTAATATTTTTTC
20766 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTT-TATTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTAT-TTT
20830 TCTTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
65 TC-TTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
* *
20895 CCTTTTCCTTTTAAATTTTTTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTT
129 CTTTTTCCTTTTAAA-TTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTT
20960 GTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCA
193 GTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCA
21025 TATTTTTGCCTCTTCATTTTTTATTTTTTTCTTG-TTTTCTAATTTTTTTCGCAAAATTCTTTTT
258 TATTTTTGCCTCTTCATTTTTTA-TTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTT
21089 ATTTCTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCT
322 ATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCT
21153 TTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTTTATTTTTTATTTTCATTTTTA
387 TTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC--TTTTATTTTTTATTTTCATTTTTA
21218 AATTCTTATAGTTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
450 AATTCTTATAG-TTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTT
21283 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTT
514 TTCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTT
21348 TCAA-TTTTTGTATTTTTTCAAATATTTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTT
579 TCAATTTTTTGTATTTTTTCAAATA-TTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTC--T
* ** * *
21412 TTTTTTATTTTTGATTCATTAT-TTTTGATTTTCTTACTTT-TTATATTTTATATTTTTTGTTTT
641 TTTTTTATTTTTTATTTTTTATATTTT-ATATT-TTA-TTTATTTTA-TTTATATTTTTTGTTTT
21475 GCTTTAATA-----T-
702 GCTTTAATATTTTTTC
*
21485 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAA-TTTTAT-ATG-TTTGAATTTTTTA-TTTT
1 TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
21546 CTTTTCTTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
66 C-TTTC-TTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACT
21611 CTTTTTCCTTTTAAATTTTTCTTTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTT
129 CTTTTTCCTTTTAAATTTTTC--TTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTT
*
21676 TGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACATAACATTTTTTCTTTTTATTTTATTTC
192 TGTTTTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTC
21741 ATATTTTTGCCTCTTCATTTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTT
257 ATATTTTTGCCTCTTCA-TTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTT
*
21806 TATTTCTTGTTTCCA-TTTTTTTTCACACTTCCTTGGATTTTTTATTTTTAATAAATCTTTTGTC
321 TATTTCTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTC
21870 TTTTCATTTTTATTCTTTTCTTAA-TTTTTCACAAATTTCTTTTTATTTTTTATTTTCATTTTTA
386 TTTTCATTTTTATTCTTTTCTTAATTTTTTCACAAATTTC-TTTTATTTTTTATTTTCATTTTTA
21934 AATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTT
450 AATTCTTATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTT
*
21999 TCTCGTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTT
515 TCTCTTTTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTT
22054 TAAGGGGTTG
Statistics
Matches: 10650, Mismatches: 177, Indels: 816
0.91 0.02 0.07
Matches are distributed among these distances:
683 16 0.00
684 61 0.01
685 39 0.00
686 11 0.00
687 85 0.01
688 115 0.01
689 119 0.01
690 96 0.01
691 49 0.00
692 28 0.00
693 132 0.01
694 31 0.00
695 89 0.01
696 142 0.01
697 108 0.01
698 149 0.01
699 254 0.02
700 519 0.05
701 260 0.02
702 162 0.02
703 330 0.03
704 319 0.03
705 234 0.02
706 462 0.04
707 373 0.04
708 508 0.05
709 381 0.04
710 358 0.03
711 582 0.05
712 364 0.03
713 299 0.03
714 256 0.02
715 269 0.03
716 210 0.02
717 299 0.03
718 262 0.02
719 159 0.01
720 67 0.01
721 214 0.02
722 379 0.04
723 390 0.04
724 63 0.01
725 42 0.00
726 8 0.00
727 71 0.01
728 31 0.00
729 51 0.00
730 61 0.01
731 162 0.02
732 124 0.01
733 285 0.03
734 6 0.00
735 3 0.00
738 2 0.00
740 2 0.00
743 1 0.00
747 42 0.00
748 27 0.00
749 8 0.00
750 32 0.00
751 35 0.00
752 19 0.00
753 15 0.00
754 1 0.00
755 64 0.01
756 92 0.01
757 1 0.00
758 13 0.00
759 114 0.01
760 69 0.01
762 26 0.00
ACGTcount: A:0.17, C:0.11, G:0.04, T:0.67
Consensus pattern (717 bp):
TTTTTTATTTCTTTCTTTATTTATATTTTCATAAATTTTTATAATGTTTTGGATTTTTTATTTTT
CTTTCTTTTTTATTTATCGTTGTTTCTTATTTTCTATTGTATTTTTATAATTTTTCATTAACTCT
TTTTCCTTTTAAATTTTTCTTTTTTTTTACTTATTTTTTCATGTGCTTTCATATTTTCTTTTGTT
TTCACTTTTTTTCTTCGTTTTAAAAATTTCTACAAAACATTTTTTCTTTTTATTTTATTTCATAT
TTTTGCCTCTTCATTTTTTATTTTTTCTTGTTTTTCTAATTTTTTTCGCAAAATTCTTTTTATTT
CTTGTTTCCATTTTTTTTTCACACTTCCTTGGATTTTTTATTTTTCATAAATCTTTTGTCTTTTC
ATTTTTATTCTTTTCTTAATTTTTTCACAAATTTCTTTTATTTTTTATTTTCATTTTTAAATTCT
TATAGTTTTTTTTGTTGCATTTTCTTTTTTCGTTTTCATTTTTATTTTGCATTAACTTTTCTCTT
TTTTAATTTTTTGTCCTTGAATTTTTATATTGTTTTCTTATTATATCTTATATGTTTTTCAATTT
TTTGTATTTTTTCAAATATTTTTTTCTATTTTCTCGTTTCATTTCATTTTTGTCTTTTTTTATTT
TTTATTTTTTATATTTTATATTTTATTTATTTTATTTATATTTTTTGTTTTGCTTTAATATTTTT
TC
Found at i:15763 original size:7 final size:7
Alignment explanation
Indices: 15753--15853 Score: 51
Period size: 7 Copynumber: 13.7 Consensus size: 7
15743 ATTTTGTCTT
15753 TTTTTTA
1 TTTTTTA
15760 TTTTTTA
1 TTTTTTA
* *
15767 TTTCTGA
1 TTTTTTA
15774 TTTTCTTA
1 TTTT-TTA
15782 CTTTTTATA
1 -TTTTT-TA
*
15791 TTTTATA
1 TTTTTTA
15798 TTTTTT-
1 TTTTTTA
* **
15804 GTTTTGC
1 TTTTTTA
**
15811 TTTAATA
1 TTTTTTA
*
15818 TTTTTTT
1 TTTTTTA
15825 TTTTTTA
1 TTTTTTA
*
15832 TTTCTTTC
1 TTT-TTTA
15840 TTTATTTA
1 TTT-TTTA
15848 TATTTT
1 T-TTTT
15854 CATAAATTTT
Statistics
Matches: 68, Mismatches: 20, Indels: 11
0.69 0.20 0.11
Matches are distributed among these distances:
6 4 0.06
7 37 0.54
8 19 0.28
9 8 0.12
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTTTA
Found at i:15988 original size:19 final size:19
Alignment explanation
Indices: 15966--16038 Score: 62
Period size: 19 Copynumber: 3.8 Consensus size: 19
15956 TTCCTTTTAA
*
15966 ATTTTTCTTTTTTTTACTT
1 ATTTTTCTTTGTTTTACTT
* * *
15985 ATTTTTCATGTGCTTT-CAT
1 ATTTTTC-TTTGTTTTACTT
16004 A-TTTTCTTTTGTTTTCACTT
1 ATTTTTC-TTTGTTTT-ACTT
16024 -TTTTTCTTTGTTTTA
1 ATTTTTCTTTGTTTTA
16039 AAAATTTCTA
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
18 12 0.29
19 18 0.43
20 12 0.29
ACGTcount: A:0.11, C:0.12, G:0.05, T:0.71
Consensus pattern (19 bp):
ATTTTTCTTTGTTTTACTT
Found at i:16480 original size:22 final size:22
Alignment explanation
Indices: 16455--16511 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
16445 ATTTTTGTCT
*
16455 TTTTTTTATTTTTTATTTTTTA
1 TTTTTTTATTTTTTATATTTTA
* *
16477 TTTTCTTACTTTTTATATTTTA
1 TTTTTTTATTTTTTATATTTTA
*
16499 TATTTTTTGTTTT
1 T-TTTTTTATTTT
16512 GCTTTAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTTTTATTTTTTATATTTTA
Found at i:16497 original size:7 final size:7
Alignment explanation
Indices: 16456--16511 Score: 67
Period size: 7 Copynumber: 7.6 Consensus size: 7
16446 TTTTTGTCTT
16456 TTTTTTA
1 TTTTTTA
16463 TTTTTTA
1 TTTTTTA
16470 TTTTTTA
1 TTTTTTA
16477 TTTTCTTA
1 TTTT-TTA
16485 CTTTTTATA
1 -TTTTT-TA
*
16494 TTTTATA
1 TTTTTTA
*
16501 TTTTTTG
1 TTTTTTA
16508 TTTT
1 TTTT
16512 GCTTTAATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
7 29 0.67
8 8 0.19
9 6 0.14
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:16538 original size:16 final size:18
Alignment explanation
Indices: 16495--16558 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 18
16485 CTTTTTATAT
*
16495 TTTATATTTTTTGT-TTTGC
1 TTTATATTTTTT-TCTTT-A
16514 TTTAATATTTTTTTCTTT-
1 TTT-ATATTTTTTTCTTTA
*
16532 TTT-TATTTCTTTCTTTA
1 TTTATATTTTTTTCTTTA
16549 TTTATATTTT
1 TTTATATTTT
16559 CATAAATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 12 0.31
17 3 0.08
18 8 0.21
19 4 0.10
20 12 0.31
ACGTcount: A:0.14, C:0.06, G:0.03, T:0.77
Consensus pattern (18 bp):
TTTATATTTTTTTCTTTA
Found at i:17200 original size:24 final size:26
Alignment explanation
Indices: 17166--17235 Score: 74
Period size: 24 Copynumber: 2.8 Consensus size: 26
17156 TCATTTTTAT
*
17166 CTTTTTTTATTTTTTATTTT-CT-TA
1 CTTTTTATATTTTTTATTTTACTGTA
* *
17190 CTTTTTATATTTTATATTTTATTGTA
1 CTTTTTATATTTTTTATTTTACTGTA
*
17216 TTTATTTATATTTTTT-TTTT
1 CTT-TTTATATTTTTTATTTT
17236 GCTTTAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
24 18 0.47
25 1 0.03
26 8 0.21
27 11 0.29
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.77
Consensus pattern (26 bp):
CTTTTTATATTTTTTATTTTACTGTA
Found at i:17231 original size:29 final size:29
Alignment explanation
Indices: 17168--17231 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
17158 ATTTTTATCT
* *
17168 TTTTTTATTTTTTATTTTCTTACTTTTTA
1 TTTTTTATATTTTATTTTCTTACTTTATA
*
17197 TATTTTATATTTTATTGTAT-TTA-TTTATA
1 TTTTTTATATTTTATT-T-TCTTACTTTATA
17226 TTTTTT
1 TTTTTT
17232 TTTTGCTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
29 24 0.83
30 4 0.14
31 1 0.03
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTTTATATTTTATTTTCTTACTTTATA
Found at i:17735 original size:31 final size:31
Alignment explanation
Indices: 17700--17768 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
17690 TTCTTATAGT
** *
17700 TTTTTTTGTTGCATTTTCTTTT-TCGTTTTCA
1 TTTTTTT-TTGCATTAACTTTTCTCGTTTTAA
*
17731 TTTTTATTTTGCATTAACTTTTCTCTTTTTAA
1 TTTTT-TTTTGCATTAACTTTTCTCGTTTTAA
17763 TTTTTT
1 TTTTTT
17769 GTCCTTGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 18 0.56
32 14 0.44
ACGTcount: A:0.12, C:0.12, G:0.06, T:0.71
Consensus pattern (31 bp):
TTTTTTTTTGCATTAACTTTTCTCGTTTTAA
Found at i:17887 original size:7 final size:7
Alignment explanation
Indices: 17877--17924 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
17867 ATTTTTGTCT
17877 TTTTTTA
1 TTTTTTA
17884 TTTTTTA
1 TTTTTTA
17891 TTTTCTTA
1 TTTT-TTA
*
17899 CTTTTTA
1 TTTTTTA
*
17906 TATTTTA
1 TTTTTTA
*
17913 TATTTTTG
1 T-TTTTTA
17921 TTTT
1 TTTT
17925 GCTTAATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
7 23 0.68
8 11 0.32
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (7 bp):
TTTTTTA
Found at i:17894 original size:15 final size:15
Alignment explanation
Indices: 17876--17919 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
17866 CATTTTTGTC
17876 TTTTTTTATTTTTTA
1 TTTTTTTATTTTTTA
* *
17891 TTTTCTTACTTTTTA
1 TTTTTTTATTTTTTA
*
17906 TATTTTATATTTTT
1 T-TTTTTTATTTTT
17920 GTTTTGCTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTATTTTTTA
Found at i:18595 original size:24 final size:25
Alignment explanation
Indices: 18555--18607 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
18545 GTTTCATTTC
*
18555 ATTTTTGTCTTTTTTTAATTTTT-T
1 ATTTTTGTCTTTCTTTAATTTTTAT
*
18579 ATTTTTGAT-TTTCTTTACTTTTTAT
1 ATTTTTG-TCTTTCTTTAATTTTTAT
18604 ATTT
1 ATTT
18608 ATATTTTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (25 bp):
ATTTTTGTCTTTCTTTAATTTTTAT
Found at i:18613 original size:24 final size:23
Alignment explanation
Indices: 18564--18616 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
18554 CATTTTTGTC
*
18564 TTTTTTTAATTTTTTATTTTTGA
1 TTTTTTTAATTTTTTATTTATGA
*
18587 TTTTCTTTACTTTTTATATTTAT-A
1 TTTT-TTTAATTTTT-TATTTATGA
18611 TTTTTT
1 TTTTTT
18617 GTTTTGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 6 0.23
24 14 0.54
25 6 0.23
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTTTTAATTTTTTATTTATGA
Found at i:18655 original size:16 final size:15
Alignment explanation
Indices: 18629--18668 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
18619 TTTGCTTTAA
*
18629 TATTTTTTCTTTTTT
1 TATTTTTTCTTTATT
18644 TATTTCTTTCTTTATT
1 TATTT-TTTCTTTATT
*
18660 TATATTTTC
1 TATTTTTTC
18669 ATAATTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (15 bp):
TATTTTTTCTTTATT
Found at i:18736 original size:23 final size:20
Alignment explanation
Indices: 18654--18741 Score: 54
Period size: 19 Copynumber: 4.3 Consensus size: 20
18644 TATTTCTTTC
* *
18654 TTTATTTATATTTTCATAATT
1 TTTATTTATCTTTTC-TATTT
* * **
18675 TTTA-TAATGTTTTGGATTT
1 TTTATTTATCTTTTCTATTT
*
18694 TTTATTTTTCTTTTCT-TTT
1 TTTATTTATCTTTTCTATTT
18713 TTTATTTATCGTTGTTCTTATTT
1 TTTATTTATC-TT-TTC-TATTT
*
18736 TCTATT
1 TTTATT
18742 GTATTTTATA
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
19 19 0.38
20 15 0.30
21 7 0.14
22 1 0.02
23 8 0.16
ACGTcount: A:0.17, C:0.07, G:0.06, T:0.70
Consensus pattern (20 bp):
TTTATTTATCTTTTCTATTT
Found at i:19306 original size:28 final size:30
Alignment explanation
Indices: 19273--19331 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
19263 GTTTCATTTC
* * *
19273 ATTTTTGT-CTTTTTTTATTTTTTATTTTT
1 ATTTTCGTACTTTTTATATTTTATATTTTT
*
19302 ATTTTCTTACTTTTTATATTTTATATTTTT
1 ATTTTCGTACTTTTTATATTTTATATTTTT
19332 TGTTTTGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (30 bp):
ATTTTCGTACTTTTTATATTTTATATTTTT
Found at i:19322 original size:30 final size:29
Alignment explanation
Indices: 19281--19382 Score: 91
Period size: 30 Copynumber: 3.4 Consensus size: 29
19271 TCATTTTTGT
*
19281 CTTTTTTTATTTTTTATTTTTATTTTCTTA
1 CTTTTTATATTTTTTATTTTT-TTTTCTTA
* * *
19311 CTTTTTATATTTTATATTTTTTGTT-TTG
1 CTTTTTATATTTTTTATTTTTTTTTCTTA
* * *
19339 C-TTTAATATTTTTTCTTTTTTATTTCTTT
1 CTTTTTATATTTTTTATTTTTT-TTTCTTA
19368 CTTTATTTATATTTT
1 C-TT-TTTATATTTT
19383 CATAAATTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 17 0.30
28 5 0.09
29 6 0.11
30 19 0.33
31 1 0.02
32 9 0.16
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (29 bp):
CTTTTTATATTTTTTATTTTTTTTTCTTA
Found at i:21982 original size:32 final size:32
Alignment explanation
Indices: 21946--22018 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
21936 TTCTTATAGT
** *
21946 TTTTTTTGTTGCATTTTCTTTTTTCGTTTTCA
1 TTTTTTTGTTGCATTAACTTTTCTCGTTTTCA
*
21978 TTTTTATT-TTGCATTAACTTTTCTCGTTTTTA
1 TTTTT-TTGTTGCATTAACTTTTCTCGTTTTCA
*
22010 ATTTTTTGT
1 TTTTTTTGT
22019 CCTTGAATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
31 2 0.06
32 30 0.88
33 2 0.06
ACGTcount: A:0.11, C:0.11, G:0.08, T:0.70
Consensus pattern (32 bp):
TTTTTTTGTTGCATTAACTTTTCTCGTTTTCA
Found at i:24065 original size:26 final size:26
Alignment explanation
Indices: 24036--24088 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
24026 CCGGTCTGAT
24036 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24062 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24088 C
1 C
24089 CTAAGTCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24947 original size:25 final size:25
Alignment explanation
Indices: 24919--24967 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
24909 CGATCTGATC
24919 TAGACT-GAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACT-CGTATGCT
*
24944 TAGACTGGGAATGAACTCGTATGC
1 TAGACTGGAAATGAACTCGTATGC
24968 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
TAGACTGGAAATGAACTCGTATGCT
Done.