Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167867.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68340
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Found at i:312 original size:7 final size:7
Alignment explanation
Indices: 296--336 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
286 TGACAATGAT
296 AAAATAAA
1 AAAAT-AA
304 AAAATAA
1 AAAATAA
*
311 AAGATAA
1 AAAATAA
*
318 AAGATAA
1 AAAATAA
325 AAAATAA
1 AAAATAA
332 AAAAT
1 AAAAT
337 TCCAAAACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:328 original size:21 final size:20
Alignment explanation
Indices: 293--333 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
283 AACTGACAAT
*
293 GATAAAATAAAAAAATAAAA
1 GATAAAAGAAAAAAATAAAA
313 GATAAAAGATAAAAAATAAAA
1 GATAAAAGA-AAAAAATAAAA
334 AATTCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (20 bp):
GATAAAAGAAAAAAATAAAA
Found at i:788 original size:18 final size:18
Alignment explanation
Indices: 746--788 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
736 TAAAAGAAAT
746 ATAAAAAAATTTAAAACA
1 ATAAAAAAATTTAAAACA
*
764 ATGAAAAAA-TTAAAACAA
1 ATAAAAAAATTTAAAAC-A
782 ATAAAAA
1 ATAAAAA
789 TGAAAGCATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (18 bp):
ATAAAAAAATTTAAAACA
Found at i:1159 original size:19 final size:19
Alignment explanation
Indices: 1131--1187 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
1121 AAAGATATAA
*
1131 AAAATCAAAGACAAAAAAT
1 AAAATAAAAGACAAAAAAT
*
1150 AAAATAAAAGTTAATAAAAAAT
1 AAAATAAAAG---ACAAAAAAT
1172 ATAAATAAAA-ACAAAA
1 A-AAATAAAAGACAAAA
1188 GAAAGTGCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
19 14 0.45
22 9 0.29
23 8 0.26
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (19 bp):
AAAATAAAAGACAAAAAAT
Found at i:1469 original size:25 final size:23
Alignment explanation
Indices: 1428--1477 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
1418 GAAAAATTAT
* * *
1428 AAAAATAGAATAGAAAATAGCAAA
1 AAAAATAGAACAAAAAAGAG-AAA
1452 AAAAATGAGAACAAAAAAGAGAAA
1 AAAAAT-AGAACAAAAAAGAGAAA
1476 AA
1 AA
1478 CCAAAAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.74, C:0.04, G:0.14, T:0.08
Consensus pattern (23 bp):
AAAAATAGAACAAAAAAGAGAAA
Found at i:1753 original size:27 final size:27
Alignment explanation
Indices: 1696--1754 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
1686 AAGTCAAAAG
* *
1696 AAAATTTTTAAAAATACAAAAAATAAT
1 AAAATTTTCAAAAATACAAAAAATAAC
** *
1723 AAAATTTTCAAAAATGGAAAAAATGAC
1 AAAATTTTCAAAAATACAAAAAATAAC
1750 AAAAT
1 AAAAT
1755 AGAAAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (27 bp):
AAAATTTTCAAAAATACAAAAAATAAC
Found at i:2191 original size:25 final size:24
Alignment explanation
Indices: 2148--2207 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
2138 AAAAAGGACT
2148 GAAAAAAAAAAGAGTTAAAAAAAG
1 GAAAAAAAAAAGAGTTAAAAAAAG
*
2172 GAAAAGAAAAAAGAAG-TAAATAAA-
1 GAAAA-AAAAAAG-AGTTAAAAAAAG
2196 GAAATAAAAAAA
1 GAAA-AAAAAAA
2208 TTCTACAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 15 0.47
25 15 0.47
26 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (24 bp):
GAAAAAAAAAAGAGTTAAAAAAAG
Found at i:2799 original size:24 final size:26
Alignment explanation
Indices: 2762--2817 Score: 64
Period size: 24 Copynumber: 2.2 Consensus size: 26
2752 AAAAAAAATT
*
2762 AAAAATAAACAAAAG-CACGAAATAGA
1 AAAAATAAACAAAAGTAACGAAAT-GA
*
2788 AAAAAT-AA-AAAAGTAAGGAAATGA
1 AAAAATAAACAAAAGTAACGAAATGA
2812 AAAAAT
1 AAAAAT
2818 GACAAGTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 13 0.48
25 8 0.30
26 6 0.22
ACGTcount: A:0.71, C:0.05, G:0.12, T:0.11
Consensus pattern (26 bp):
AAAAATAAACAAAAGTAACGAAATGA
Found at i:3012 original size:17 final size:15
Alignment explanation
Indices: 2971--3124 Score: 82
Period size: 15 Copynumber: 9.7 Consensus size: 15
2961 AAAATTTATG
*
2971 AAAATATAAATAAAGA
1 AAAAAATAAA-AAAGA
* *
2987 AAGAAATAAAAAATA
1 AAAAAATAAAAAAGA
3002 AACCAAAATAAAAAAGA
1 AA--AAAATAAAAAAGA
3019 AAAAAATAAAGCAGAAGA
1 AAAAAATAAA--A-AAGA
*
3037 AAAAGATAAATAAAGCA
1 AAAAAATAAA-AAAG-A
3054 CAAAAAATAAAAAA-A
1 -AAAAAATAAAAAAGA
* * *
3069 AACAAA-AATACA-A
1 AAAAAATAAAAAAGA
*
3082 TAAAAATATAAAAAGTA
1 AAAAAATA-AAAAAG-A
*
3099 AGAAAATAAAAATA-A
1 AAAAAATAAAAA-AGA
*
3114 AAAAAACAAAA
1 AAAAAATAAAA
3125 TTAAATAAAA
Statistics
Matches: 107, Mismatches: 19, Indels: 25
0.71 0.13 0.17
Matches are distributed among these distances:
13 9 0.08
14 6 0.06
15 28 0.26
16 15 0.14
17 27 0.25
18 22 0.21
ACGTcount: A:0.77, C:0.05, G:0.06, T:0.11
Consensus pattern (15 bp):
AAAAAATAAAAAAGA
Found at i:3086 original size:11 final size:11
Alignment explanation
Indices: 3057--3119 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
3047 TAAAGCACAA
3057 AAAATAAAAA-
1 AAAATAAAAAT
*
3067 AAAACAAAAAT
1 AAAATAAAAAT
*
3078 ACAATAAAAAT
1 AAAATAAAAAT
* *
3089 ATAAA-AAGTAAG
1 A-AAATAA-AAAT
3101 AAAATAAAAAT
1 AAAATAAAAAT
3112 AAAA-AAAA
1 AAAATAAAA
3120 CAAAATTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 13 0.32
11 21 0.51
12 7 0.17
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:3129 original size:15 final size:16
Alignment explanation
Indices: 2971--3135 Score: 72
Period size: 17 Copynumber: 9.9 Consensus size: 16
2961 AAAATTTATG
2971 AAAATATAAATAAAGAA-
1 AAAA-ATAAATAAA-AAC
* *
2988 AGAAATAAAAAATAAAC
1 AAAAATAAATAA-AAAC
*
3005 CAAAATAAA-AAAGAA-
1 AAAAATAAATAAA-AAC
*
3020 AAAAATAAAGCAGAAGAA-
1 AAAAATAAA-TA-AA-AAC
* *
3038 AAAGATAAATAAAGCAC
1 AAAAATAAATAAA-AAC
*
3055 AAAAAATAAAAAAAAAC
1 -AAAAATAAATAAAAAC
*
3072 AAAAATACAATAAAAAT
1 AAAAATA-AATAAAAAC
* * *
3089 ATAAA-AAGTAAGAAAAT
1 AAAAATAAAT-A-AAAAC
3106 AAAAATAAA-AAAAAC
1 AAAAATAAATAAAAAC
*
3121 AAAATTAAATAAAAA
1 AAAAATAAATAAAAA
3136 TTTCAAAAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 27
0.72 0.12 0.17
Matches are distributed among these distances:
15 23 0.20
16 32 0.28
17 35 0.30
18 26 0.22
ACGTcount: A:0.77, C:0.05, G:0.06, T:0.12
Consensus pattern (16 bp):
AAAAATAAATAAAAAC
Found at i:3181 original size:19 final size:18
Alignment explanation
Indices: 3159--3194 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
3149 ATGGAATGAC
3159 AAAATAAAAAAAAGTTGAA
1 AAAATAAAAAAAA-TTGAA
*
3178 AAAATACAAAAAATTGA
1 AAAATAAAAAAAATTGA
3195 GAAACGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.17
Consensus pattern (18 bp):
AAAATAAAAAAAATTGAA
Found at i:4890 original size:20 final size:20
Alignment explanation
Indices: 4853--4890 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4843 AAATATTTTG
*
4853 ATTTGAATTTATTGATTTAA
1 ATTTGAATTTATTAATTTAA
4873 ATTTAGAATTT-TTAATTT
1 ATTT-GAATTTATTAATTT
4891 TTAAATCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTGAATTTATTAATTTAA
Found at i:5071 original size:19 final size:19
Alignment explanation
Indices: 5033--5072 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
5023 TTTTAAAATC
*
5033 AATTTTAAATTTGAATTTA
1 AATTTTAAATTTGAACTTA
*
5052 AATTTTAAATTTTAACTTA
1 AATTTTAAATTTGAACTTA
5071 AA
1 AA
5073 AAATGAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
AATTTTAAATTTGAACTTA
Found at i:14195 original size:12 final size:12
Alignment explanation
Indices: 14180--14229 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
14170 TCTAATTAAG
14180 ATCTTGTATTTT
1 ATCTTGTATTTT
* *
14192 ATCTTGAAATTT
1 ATCTTGTATTTT
*
14204 AT-TTTTA-TTT
1 ATCTTGTATTTT
*
14214 ATCGTGTATTTT
1 ATCTTGTATTTT
14226 ATCT
1 ATCT
14230 AATTAACAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
10 5 0.17
11 6 0.21
12 18 0.62
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.62
Consensus pattern (12 bp):
ATCTTGTATTTT
Found at i:14313 original size:23 final size:23
Alignment explanation
Indices: 14283--14330 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
14273 ACAATTTGGA
14283 TTATTTTATTTATTACTTATTAT
1 TTATTTTATTTATTACTTATTAT
*
14306 TTATTTTATTTATTATTTATTAT
1 TTATTTTATTTATTACTTATTAT
14329 TT
1 TT
14331 TTCTATCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (23 bp):
TTATTTTATTTATTACTTATTAT
Found at i:14321 original size:7 final size:7
Alignment explanation
Indices: 14288--14330 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
14278 TTGGATTATT
14288 TTATTTA
1 TTATTTA
*
14295 TTACTTA
1 TTATTTA
14302 TTATTTA
1 TTATTTA
14309 TTTTATTTA
1 --TTATTTA
14318 TTATTTA
1 TTATTTA
14325 TTATTT
1 TTATTT
14331 TTCTATCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 25 0.78
9 7 0.22
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (7 bp):
TTATTTA
Found at i:14576 original size:23 final size:22
Alignment explanation
Indices: 14558--14604 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
14548 ACTTTTATTT
*
14558 TATTTTTTATATCTTTTTTTCTA
1 TATTTATTATAT-TTTTTTTCTA
14581 TATTTATTATA--TTTTTTCTA
1 TATTTATTATATTTTTTTTCTA
14601 TATT
1 TATT
14605 CTAAACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 13 0.57
23 10 0.43
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.72
Consensus pattern (22 bp):
TATTTATTATATTTTTTTTCTA
Found at i:14709 original size:24 final size:24
Alignment explanation
Indices: 14682--14755 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 24
14672 ATTTTCTTAC
14682 TTTTTTATTTTTTGTTTTT-GT-TT
1 TTTTTTATTTTTT-TTTTTAGTATT
*
14705 ATTTTTAATTGTTATTTTTTTAGTATT
1 -TTTTTTATT-TT-TTTTTTTAGTATT
*
14732 TTATTTTATTTTTTCTTTTA-TATT
1 TT-TTTTATTTTTTTTTTTAGTATT
14756 AATATTTTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
24 12 0.29
25 14 0.33
26 8 0.19
27 8 0.19
ACGTcount: A:0.15, C:0.01, G:0.05, T:0.78
Consensus pattern (24 bp):
TTTTTTATTTTTTTTTTTAGTATT
Found at i:14800 original size:13 final size:12
Alignment explanation
Indices: 14682--14802 Score: 51
Period size: 12 Copynumber: 10.3 Consensus size: 12
14672 ATTTTCTTAC
14682 TTTTTTATTTT-
1 TTTTTTATTTTA
14693 TTGTTTT-TGTTTA
1 TT-TTTTAT-TTTA
*
14706 TTTTTAATTGTTA
1 TTTTTTATT-TTA
**
14719 TTTTTT-TAGTA
1 TTTTTTATTTTA
14730 --TTTTATTTTA
1 TTTTTTATTTTA
*
14740 TTTTTTCTTTTA
1 TTTTTTATTTTA
* *
14752 -TATTAATATTT-
1 TTTTTTAT-TTTA
* * *
14763 TCTCTTAATTTA
1 TTTTTTATTTTA
*
14775 -TTTTTCTTTTA
1 TTTTTTATTTTA
14786 TTTTTTATTTATA
1 TTTTTTATTT-TA
14799 TTTT
1 TTTT
14803 AAAAAAATTG
Statistics
Matches: 77, Mismatches: 20, Indels: 24
0.64 0.17 0.20
Matches are distributed among these distances:
9 4 0.05
10 3 0.04
11 19 0.25
12 34 0.44
13 17 0.22
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:14969 original size:17 final size:17
Alignment explanation
Indices: 14945--15000 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
14935 TTTCATATGC
14945 TTTT-ATTTTTTATTTG
1 TTTTAATTTTTTATTTG
**
14961 TTTTAATTTTTTCGTTG
1 TTTTAATTTTTTATTTG
14978 TTTTAAAATTTTTTATTT-
1 TTTT--AATTTTTTATTTG
14996 TTTTA
1 TTTTA
15001 TTTCAAATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 5 0.15
17 14 0.42
18 4 0.12
19 10 0.30
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (17 bp):
TTTTAATTTTTTATTTG
Found at i:15465 original size:34 final size:35
Alignment explanation
Indices: 15427--15505 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 35
15417 CTATTTATCT
*
15427 TTTTTCTTTTGCTTTAATATTT-TTTCTTATTTTA
1 TTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
* * * *
15461 TTTTTATTTTGGTTTATTTTTTATTTCTTTTTTTA
1 TTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
*
15496 TTTATATTTT
1 TTTTTATTTT
15506 CATAAATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
34 18 0.47
35 20 0.53
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (35 bp):
TTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
Found at i:15465 original size:35 final size:36
Alignment explanation
Indices: 15426--15498 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 36
15416 TCTATTTATC
*
15426 TTTTTTCTTTTGCTTTAATATTT-TTTCTTATTTTA
1 TTTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
* * * *
15461 -TTTTTATTTTGGTTTATTTTTTATTTCTTTTTTTA
1 TTTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
15496 TTT
1 TTT
15499 ATATTTTCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
34 18 0.58
35 11 0.35
36 2 0.06
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.78
Consensus pattern (36 bp):
TTTTTTATTTTGCTTTAATATTTATTTCTTATTTTA
Found at i:15499 original size:23 final size:23
Alignment explanation
Indices: 15454--15505 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
15444 TATTTTTTCT
*
15454 TATTTTATTTTTATTTTGGTTTA
1 TATTTTATTTTTATTTTGATTTA
* *
15477 TTTTTTATTTCTT-TTTTTATTTA
1 TATTTTATTT-TTATTTTGATTTA
15500 TATTTT
1 TATTTT
15506 CATAAATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 22 0.92
24 2 0.08
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (23 bp):
TATTTTATTTTTATTTTGATTTA
Found at i:15515 original size:35 final size:35
Alignment explanation
Indices: 15449--15516 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
15439 TTTAATATTT
* ** **
15449 TTTCTTATTTTATTTTTATTTTGGTTTATTTTTTA
1 TTTCTTATTTTATTTATATTTTCATAAATTTTTTA
*
15484 TTTCTTTTTTTATTTATATTTTCATAAATTTTT
1 TTTCTTATTTTATTTATATTTTCATAAATTTTT
15517 ATAATGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (35 bp):
TTTCTTATTTTATTTATATTTTCATAAATTTTTTA
Found at i:15627 original size:16 final size:16
Alignment explanation
Indices: 15594--15626 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
15584 TAATTTTTCA
15594 TTAACTTTTTTTCCTT
1 TTAACTTTTTTTCCTT
*
15610 TTAA-TTTTTTTTCTT
1 TTAACTTTTTTTCCTT
15625 TT
1 TT
15627 TCTTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (16 bp):
TTAACTTTTTTTCCTT
Found at i:15778 original size:39 final size:37
Alignment explanation
Indices: 15730--15804 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 37
15720 TCTATAAACT
* *
15730 AAAT-TTTTTTCCTATTTTGTCATTTTTTCTTCATTTTTG
1 AAATATTTTTTACT-TTTTGT-ATTTTTT-TTAATTTTTG
15769 AAATATTTTTTACTTTTTGTATTTTTTTTAATTTTT
1 AAATATTTTTTACTTTTTGTATTTTTTTTAATTTTT
15805 TCTTTTGACT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 8 0.24
38 7 0.21
39 10 0.30
40 8 0.24
ACGTcount: A:0.19, C:0.08, G:0.04, T:0.69
Consensus pattern (37 bp):
AAATATTTTTTACTTTTTGTATTTTTTTTAATTTTTG
Found at i:15795 original size:18 final size:18
Alignment explanation
Indices: 15733--15804 Score: 56
Period size: 20 Copynumber: 3.8 Consensus size: 18
15723 ATAAACTAAA
*
15733 TTTTTTTCCTATTTTGTCAT
1 TTTTTTTACT-TTTTGT-AT
*
15753 TTTTTCTT-CATTTTTGAAAT
1 TTTTT-TTAC-TTTTTG-TAT
*
15773 ATTTTTTACTTTTTGTAT
1 TTTTTTTACTTTTTGTAT
*
15791 TTTTTTTAATTTTT
1 TTTTTTTACTTTTT
15805 TCTTTTGACT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
18 14 0.33
19 8 0.19
20 18 0.42
21 3 0.07
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.72
Consensus pattern (18 bp):
TTTTTTTACTTTTTGTAT
Found at i:16758 original size:9 final size:9
Alignment explanation
Indices: 16746--16776 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
16736 TTTTTCTTTT
16746 TTTTTGTAC
1 TTTTTGTAC
16755 TTTTTGTA-
1 TTTTTGTAC
16763 TTTTTGTAC
1 TTTTTGTAC
16772 TTTTT
1 TTTTT
16777 ATCTTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (9 bp):
TTTTTGTAC
Found at i:16765 original size:38 final size:37
Alignment explanation
Indices: 16723--16796 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
16713 ATTTATATTA
*
16723 TATTTTAT-TAATTTTTTTCTTTTTTTTTGTACTTTTTG
1 TATTTT-TGTAATTTTTATCTTTTTTTTT-TACTTTTTG
* *
16761 TATTTTTGTACTTTTTATCTTTTTTTTTTATTTTTT
1 TATTTTTGTAATTTTTATCTTTTTTTTTTACTTTTT
16797 CTTAAGGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 8 0.25
38 24 0.75
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.78
Consensus pattern (37 bp):
TATTTTTGTAATTTTTATCTTTTTTTTTTACTTTTTG
Found at i:16783 original size:17 final size:17
Alignment explanation
Indices: 16746--16784 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
16736 TTTTTCTTTT
*
16746 TTTTTGTACTTTTTGTA
1 TTTTTGTACTTTTTATA
*
16763 TTTTTGTACTTTTTATC
1 TTTTTGTACTTTTTATA
16780 TTTTT
1 TTTTT
16785 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.10, C:0.08, G:0.08, T:0.74
Consensus pattern (17 bp):
TTTTTGTACTTTTTATA
Found at i:16842 original size:29 final size:30
Alignment explanation
Indices: 16810--16881 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 30
16800 AAGGTTTTTC
**
16810 TTCCTTTTTTTTTTG-GGTTTTTTTGGCAT
1 TTCCTTTTTTTTTTGTGGTTTTTTTCACAT
** *
16839 TTCC-TTTTAATTTGTGTTTTTTTTCACAT
1 TTCCTTTTTTTTTTGTGGTTTTTTTCACAT
*
16868 TTCCTTTTGTTTTT
1 TTCCTTTTTTTTTT
16882 ATTTTTTATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
28 8 0.24
29 19 0.58
30 6 0.18
ACGTcount: A:0.07, C:0.12, G:0.11, T:0.69
Consensus pattern (30 bp):
TTCCTTTTTTTTTTGTGGTTTTTTTCACAT
Found at i:16886 original size:28 final size:29
Alignment explanation
Indices: 16827--16888 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
16817 TTTTTTTGGG
** *
16827 TTTTTTTGGCATTTCCTTTTAATTTGTGT
1 TTTTTTTCACATTTCCTTTTAATTTGTAT
* *
16856 TTTTTTTCACATTTCCTTTT-GTTTTTAT
1 TTTTTTTCACATTTCCTTTTAATTTGTAT
16884 TTTTT
1 TTTTT
16889 ATTTTGTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.10, C:0.11, G:0.08, T:0.71
Consensus pattern (29 bp):
TTTTTTTCACATTTCCTTTTAATTTGTAT
Found at i:16970 original size:19 final size:19
Alignment explanation
Indices: 16942--16978 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16932 TTTATATCTT
16942 TATTTCTTATTATTTGTTA
1 TATTTCTTATTATTTGTTA
* *
16961 TATTTTTTATTTTTTGTT
1 TATTTCTTATTATTTGTT
16979 TGTATTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (19 bp):
TATTTCTTATTATTTGTTA
Found at i:17521 original size:22 final size:22
Alignment explanation
Indices: 17463--17521 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
17453 TTTTGTGCAC
*
17463 TTTT-TTTTGTTTTTATTTATA
1 TTTTGTTTTGATTTTATTTATA
*
17484 TTTTGTATTGACTTTTATTT-TA
1 TTTTGTTTTGA-TTTTATTTATA
17506 TTTTGTCTTTGATTTT
1 TTTTGT-TTTGATTTT
17522 CTATTTCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 4 0.12
22 16 0.50
23 12 0.38
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.75
Consensus pattern (22 bp):
TTTTGTTTTGATTTTATTTATA
Found at i:17679 original size:25 final size:22
Alignment explanation
Indices: 17650--17703 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
17640 TTATCCTCTA
* *
17650 ATTTTTTATTTT-CTTACTTTTAT
1 ATTTTTTTTTTTGTTTA-TTTT-T
17673 ATTTTTTGTTTTTGTTTATTTTT
1 ATTTTTT-TTTTTGTTTATTTTT
17696 ATTTTTTT
1 ATTTTTTT
17704 AGTATTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 1 0.04
23 15 0.56
24 8 0.30
25 3 0.11
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.80
Consensus pattern (22 bp):
ATTTTTTTTTTTGTTTATTTTT
Found at i:17729 original size:34 final size:33
Alignment explanation
Indices: 17687--17769 Score: 87
Period size: 34 Copynumber: 2.5 Consensus size: 33
17677 TTTGTTTTTG
* **
17687 TTTA-TTTTTATTTTTTTAGTATTTTATGTTGT
1 TTTATTTTTTATTTTTTTAATATTTTATGTTAA
* * * *
17719 TTTATGTTTTTGTTATATTAATATTTTCTGTTAA
1 TTTAT-TTTTTATTTTTTTAATATTTTATGTTAA
17753 TTTATTTTTTATTTTTT
1 TTTATTTTTTATTTTTT
17770 ATTTTATTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
32 4 0.10
33 9 0.23
34 26 0.67
ACGTcount: A:0.18, C:0.01, G:0.07, T:0.73
Consensus pattern (33 bp):
TTTATTTTTTATTTTTTTAATATTTTATGTTAA
Found at i:17783 original size:18 final size:18
Alignment explanation
Indices: 17668--17785 Score: 52
Period size: 18 Copynumber: 6.6 Consensus size: 18
17658 TTTTCTTACT
*
17668 TTTATATTTTTTGTTTT-
1 TTTATATTTTTTATTTTA
17685 TGTT-TA-TTTTTATTTT-
1 T-TTATATTTTTTATTTTA
* *
17701 TTTAGTA--TTTTATGTTG
1 TTTA-TATTTTTTATTTTA
* *
17718 TTT-TATGTTTTTGTTATA
1 TTTATAT-TTTTTATTTTA
* *
17736 TTAATATTTTCTGTTAATTTA
1 TTTATA-TTT-T-TTATTTTA
*
17757 TTTTTTATTTTTTATTTTA
1 -TTTATATTTTTTATTTTA
17776 TTTATATTTT
1 TTTATATTTT
17786 AAAATTTTTT
Statistics
Matches: 75, Mismatches: 14, Indels: 23
0.67 0.12 0.21
Matches are distributed among these distances:
15 4 0.05
16 18 0.24
17 8 0.11
18 19 0.25
19 11 0.15
20 3 0.04
21 8 0.11
22 4 0.05
ACGTcount: A:0.18, C:0.01, G:0.07, T:0.75
Consensus pattern (18 bp):
TTTATATTTTTTATTTTA
Found at i:17868 original size:26 final size:28
Alignment explanation
Indices: 17837--17904 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
17827 GAATCTTTTT
*
17837 TATTTTATCATTTT-CTTATTTTTTG-TC
1 TATTTTATAATTTTGC-TATTTTTTGTTC
* **
17864 T-TTTTTTTGTTTTGCTATTTTTTGTTC
1 TATTTTATAATTTTGCTATTTTTTGTTC
17891 TATTTTATAATTTT
1 TATTTTATAATTTT
17905 TCAATAACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 18 0.56
27 5 0.16
28 9 0.28
ACGTcount: A:0.13, C:0.07, G:0.06, T:0.74
Consensus pattern (28 bp):
TATTTTATAATTTTGCTATTTTTTGTTC
Found at i:18336 original size:32 final size:32
Alignment explanation
Indices: 18271--18366 Score: 106
Period size: 32 Copynumber: 3.0 Consensus size: 32
18261 TCAAATTGTC
* * *
18271 TTTT-TTTATTTTTTATTTTTGATTCGTTTTTTA
1 TTTTCTTTAATTTTTATATTT-ATT-GTATTTTA
* *
18304 TTTTC-TTACTTTATTGTATTTATTGTATTTTA
1 TTTTCTTTAATTT-TTATATTTATTGTATTTTA
18336 TTTTCTTTAATTTTTATATTTATTGTATTTT
1 TTTTCTTTAATTTTTATATTTATTGTATTTT
18367 TGTTTATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
32 29 0.54
33 19 0.35
34 6 0.11
ACGTcount: A:0.17, C:0.04, G:0.05, T:0.74
Consensus pattern (32 bp):
TTTTCTTTAATTTTTATATTTATTGTATTTTA
Found at i:19023 original size:25 final size:24
Alignment explanation
Indices: 18995--19049 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
18985 TTTATCTTCG
*
18995 ATTTTTTATATCTTTTTATCTTTTT
1 ATTTGTTATATCTTTTTAT-TTTTT
*
19020 ATTTGTTATATTTTTTTATTTTTT
1 ATTTGTTATATCTTTTTATTTTTT
*
19044 GTTTGT
1 ATTTGT
19050 ATTTAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.15, C:0.04, G:0.05, T:0.76
Consensus pattern (24 bp):
ATTTGTTATATCTTTTTATTTTTT
Found at i:19034 original size:24 final size:24
Alignment explanation
Indices: 18981--19049 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
18971 ATCCCTTTTA
** *
18981 ATTTTTTATC-TTCGATTTTTTAT
1 ATTTTTTATCTTTTTATTTGTTAT
19004 ATCTTTTTATCTTTTTATTTGTTAT
1 AT-TTTTTATCTTTTTATTTGTTAT
*
19029 ATTTTTTTAT-TTTTTGTTTGT
1 A-TTTTTTATCTTTTTATTTGT
19050 ATTTAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
23 2 0.05
24 18 0.46
25 18 0.46
26 1 0.03
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (24 bp):
ATTTTTTATCTTTTTATTTGTTAT
Found at i:19194 original size:13 final size:12
Alignment explanation
Indices: 19178--19234 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 12
19168 TGCTTTAATA
19178 TTTTCTCTTTTTT
1 TTTTCT-TTTTTT
19191 TTTTCTTTTTTT
1 TTTTCTTTTTTT
*
19203 TTTATTTTTTATTT
1 TTT-TCTTTT-TTT
*
19217 TTGTTATTTTTGTT
1 TT-TTCTTTTT-TT
19231 TTTT
1 TTTT
19235 TATAAAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
12 9 0.24
13 14 0.37
14 14 0.37
15 1 0.03
ACGTcount: A:0.05, C:0.05, G:0.04, T:0.86
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:19210 original size:16 final size:15
Alignment explanation
Indices: 19185--19235 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
19175 ATATTTTCTC
*
19185 TTTTTTT-TTTCTTT
1 TTTTTTTATTTTTTT
19199 TTTTTTTATTTTTTAT
1 TTTTTTTATTTTTT-T
*
19215 TTTTGTTATTTTTGTT
1 TTTTTTTATTTTT-TT
19231 TTTTT
1 TTTTT
19236 ATAAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
14 7 0.23
15 5 0.16
16 18 0.58
17 1 0.03
ACGTcount: A:0.06, C:0.02, G:0.04, T:0.88
Consensus pattern (15 bp):
TTTTTTTATTTTTTT
Found at i:20191 original size:19 final size:19
Alignment explanation
Indices: 20149--20189 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
20139 TTTTTTTCTA
20149 TTTTGTCATTTTTATTAGT
1 TTTTGTCATTTTTATTAGT
* *
20168 TTTTGT-ATTTTTTTTAAT
1 TTTTGTCATTTTTATTAGT
20186 TTTT
1 TTTT
20190 TGACTCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.15, C:0.02, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTGTCATTTTTATTAGT
Found at i:20496 original size:23 final size:22
Alignment explanation
Indices: 20470--20519 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
20460 TTTTTTTATA
* *
20470 ATTTTTTCTTTTTCTTTTATCTT
1 ATTTTTTCATTTGCTTTTAT-TT
*
20493 ATTTGTTCATTTGCTTTTATTT
1 ATTTTTTCATTTGCTTTTATTT
20515 -TTTTT
1 ATTTTT
20520 GTTTTAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.17
22 2 0.09
23 17 0.74
ACGTcount: A:0.10, C:0.10, G:0.04, T:0.76
Consensus pattern (22 bp):
ATTTTTTCATTTGCTTTTATTT
Found at i:20613 original size:44 final size:42
Alignment explanation
Indices: 20459--20610 Score: 126
Period size: 44 Copynumber: 3.4 Consensus size: 42
20449 TCAGTAATTC
* *
20459 TTTTTTTTATAATTTTTT-CTTTTTCTTTTATCTTATTTGTTCA
1 TTTTTTTTAT-TTTTTTTGCTTTTTCTTATATCTT-TTTGTTCA
* * * *
20502 TTTGCTTTTATTTTTTTTGTTTTAATTTTTTTATATACTTTGTATTTTCA
1 TTT-TTTTTATTTTTTTTG--CT--TTTTCTTATAT-CTTT-T-TGTTCA
*
20552 TTTTTCTTATTTTTTCTTGCTTTTTCTTATATCTTTTTGTTCA
1 TTTTTTTTATTTTTT-TTGCTTTTTCTTATATCTTTTTGTTCA
20595 CTTTTTTTTATTTTTT
1 -TTTTTTTTATTTTTT
20611 CTTTACAATT
Statistics
Matches: 86, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
43 14 0.16
44 21 0.24
45 4 0.05
46 11 0.13
48 11 0.13
49 14 0.16
50 11 0.13
ACGTcount: A:0.12, C:0.09, G:0.04, T:0.74
Consensus pattern (42 bp):
TTTTTTTTATTTTTTTTGCTTTTTCTTATATCTTTTTGTTCA
Found at i:20855 original size:24 final size:22
Alignment explanation
Indices: 20828--20878 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
20818 GATTTGCTAA
*
20828 TTTTTGATTTTCTTTCTTTTTGAT
1 TTTTTGATTTTCTTT-ATTTT-AT
* *
20852 TTTTTGTTTTTGTTTATTTTAT
1 TTTTTGATTTTCTTTATTTTAT
20874 TTTTT
1 TTTTT
20879 CTTAATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.29
23 4 0.17
24 13 0.54
ACGTcount: A:0.08, C:0.04, G:0.08, T:0.80
Consensus pattern (22 bp):
TTTTTGATTTTCTTTATTTTAT
Found at i:20877 original size:16 final size:15
Alignment explanation
Indices: 20828--20899 Score: 54
Period size: 16 Copynumber: 4.5 Consensus size: 15
20818 GATTTGCTAA
* *
20828 TTTTTGATTTTCTTT
1 TTTTTTATTTTATTT
* *
20843 CTTTTTGATTTTTTGTT
1 -TTTTTTATTTTAT-TT
20860 TTTGTTTATTTTATTT
1 TTT-TTTATTTTATTT
* *
20876 TTTCTTAATTTATTT
1 TTTTTTATTTTATTT
20891 TTTATTTAT
1 TTT-TTTAT
20900 ATTTTGAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
15 13 0.28
16 23 0.50
17 10 0.22
ACGTcount: A:0.12, C:0.04, G:0.06, T:0.78
Consensus pattern (15 bp):
TTTTTTATTTTATTT
Found at i:20948 original size:8 final size:8
Alignment explanation
Indices: 20935--20978 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
20925 AAAAATTTTA
20935 TTTTTATT
1 TTTTTATT
20943 TTTTTAATCT
1 TTTTT-AT-T
20953 TTTTTATT
1 TTTTTATT
*
20961 TTTTCATT
1 TTTTTATT
*
20969 TTCTTATT
1 TTTTTATT
20977 TT
1 TT
20979 GCCTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
8 21 0.68
9 4 0.13
10 6 0.19
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTATT
Found at i:21141 original size:26 final size:25
Alignment explanation
Indices: 21111--21202 Score: 82
Period size: 26 Copynumber: 3.6 Consensus size: 25
21101 TTTTTTACTT
21111 TTTTTCTTTTTTATTTCAAATCTTG
1 TTTTTCTTTTTTATTTCAAATCTTG
* * *
21136 TCTTTTCATTTTTATTT-AATTTTTG
1 T-TTTTCTTTTTTATTTCAAATCTTG
*
21161 TTTTTCTTATTTT-TTTCACAAAT-TTC
1 TTTTTCTT-TTTTATTT--CAAATCTTG
*
21187 TTTTTATTTTTTATTT
1 TTTTTCTTTTTTATTT
21203 GAGTTTTTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
24 9 0.17
25 16 0.30
26 26 0.48
27 3 0.06
ACGTcount: A:0.16, C:0.10, G:0.02, T:0.72
Consensus pattern (25 bp):
TTTTTCTTTTTTATTTCAAATCTTG
Found at i:21319 original size:22 final size:22
Alignment explanation
Indices: 21294--21338 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
21284 TTTAATTTTG
21294 TCTT-TCACATTTTATATTGTTT
1 TCTTGTCACATTTTATA-TGTTT
* *
21316 TCTTGTTATATTTTATATGTTT
1 TCTTGTCACATTTTATATGTTT
21338 T
1 T
21339 TCAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.18, C:0.09, G:0.07, T:0.67
Consensus pattern (22 bp):
TCTTGTCACATTTTATATGTTT
Found at i:21430 original size:20 final size:20
Alignment explanation
Indices: 21403--21445 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
21393 TTTTTGAAAA
*
21403 TTTTATTCA-AATTTTTTAT
1 TTTTATTCATAATTTTTGAT
*
21422 TTTTGATTCATTATTTTTGAT
1 TTTT-ATTCATAATTTTTGAT
21443 TTT
1 TTT
21446 GTTACTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 5 0.25
21 11 0.55
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTATTCATAATTTTTGAT
Found at i:21501 original size:19 final size:18
Alignment explanation
Indices: 21442--21490 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 18
21432 TTATTTTTGA
21442 TTTTGTTACTTTTTGTATTT
1 TTTTG-TACTTTTTGTA-TT
21462 TTGTTGTA-TTTTTGTATT
1 TT-TTGTACTTTTTGTATT
21480 TTTTGTACTTT
1 TTTTGTACTTT
21491 GTTTATCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.19
18 7 0.26
19 8 0.30
20 4 0.15
21 3 0.11
ACGTcount: A:0.10, C:0.04, G:0.12, T:0.73
Consensus pattern (18 bp):
TTTTGTACTTTTTGTATT
Found at i:21786 original size:14 final size:12
Alignment explanation
Indices: 21734--21789 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
21724 TTTTCTTTTG
21734 TTTTTATTTATAT
1 TTTTTATTT-TAT
*
21747 TTTTTA--TTAA
1 TTTTTATTTTAT
*
21757 CTTTTATTTTAT
1 TTTTTATTTTAT
21769 TTTTTATCTTTGAT
1 TTTTTAT-TTT-AT
21783 TTTTTAT
1 TTTTTAT
21790 ATCTTTTTCC
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 7 0.20
11 1 0.03
12 9 0.26
13 9 0.26
14 9 0.26
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.75
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:21977 original size:23 final size:23
Alignment explanation
Indices: 21951--21995 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21941 TTTTCTCTTA
* * *
21951 ATTTATTTTTTCATAAATTTTTT
1 ATTTATATTTTAAAAAATTTTTT
21974 ATTTATATTTTAAAAAATTTTT
1 ATTTATATTTTAAAAAATTTTT
21996 GTAAAGTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
ATTTATATTTTAAAAAATTTTTT
Found at i:22087 original size:17 final size:16
Alignment explanation
Indices: 22067--22109 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
22057 CTTTTTTTTT
22067 TTTTTCATATGCTTTCA
1 TTTTT-ATATGCTTTCA
* *
22084 TTTTTATTTGTTTTCA
1 TTTTTATATGCTTTCA
22100 TTTTTTATAT
1 -TTTTTATAT
22110 TCCAAATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.16, C:0.09, G:0.05, T:0.70
Consensus pattern (16 bp):
TTTTTATATGCTTTCA
Found at i:22416 original size:21 final size:20
Alignment explanation
Indices: 22392--22436 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
22382 GTCGTCTTTA
* *
22392 TTTTTTT-TATTGTTTTATT
1 TTTTTTTCTTTTGCTTTATT
22411 GTTTTTTTCTTTTGCTTTATT
1 -TTTTTTTCTTTTGCTTTATT
22432 TTTTT
1 TTTTT
22437 CTTATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.82
Consensus pattern (20 bp):
TTTTTTTCTTTTGCTTTATT
Found at i:22418 original size:11 final size:10
Alignment explanation
Indices: 22388--22469 Score: 53
Period size: 11 Copynumber: 7.9 Consensus size: 10
22378 TTTTGTCGTC
22388 TTTA-TTTTT
1 TTTATTTTTT
*
22397 TTTA--TTGT
1 TTTATTTTTT
22405 TTTATTGTTTT
1 TTTATT-TTTT
* **
22416 TTTCTTTTGC
1 TTTATTTTTT
22426 TTTATTTTTT
1 TTTATTTTTT
22436 TCTTATTTTATT
1 T-TTATTTT-TT
22448 TTTATTTCTTT
1 TTTATTT-TTT
22459 ATTTATATTTT
1 -TTTAT-TTTT
22470 CAAAAATTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
8 7 0.12
9 4 0.07
10 10 0.18
11 23 0.40
12 11 0.19
13 2 0.04
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:22444 original size:21 final size:21
Alignment explanation
Indices: 22392--22444 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
22382 GTCGTCTTTA
* *
22392 TTTTTTT-TATTGTTTTATTG
1 TTTTTTTATTTTGCTTTATTG
*
22412 TTTTTTTCTTTTGCTTTATT-
1 TTTTTTTATTTTGCTTTATTG
22432 TTTTTCTTATTTT
1 TTTTT-TTATTTT
22445 ATTTTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.08, C:0.06, G:0.06, T:0.81
Consensus pattern (21 bp):
TTTTTTTATTTTGCTTTATTG
Found at i:22445 original size:37 final size:37
Alignment explanation
Indices: 22387--22458 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
22377 TTTTTGTCGT
* *
22387 CTTTATTTTTTTTATTGTTTTATTGTTTTTTTCTTTTG
1 CTTTATTTTTTTTATTATTTTATT-TTTATTTCTTTTG
*
22425 CTTTA-TTTTTTTCTTATTTTATTTTTATTTCTTT
1 CTTTATTTTTTTTATTATTTTATTTTTATTTCTTT
22459 ATTTATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
36 10 0.32
37 16 0.52
38 5 0.16
ACGTcount: A:0.10, C:0.07, G:0.04, T:0.79
Consensus pattern (37 bp):
CTTTATTTTTTTTATTATTTTATTTTTATTTCTTTTG
Found at i:22455 original size:18 final size:17
Alignment explanation
Indices: 22388--22469 Score: 67
Period size: 18 Copynumber: 4.5 Consensus size: 17
22378 TTTTGTCGTC
* *
22388 TTTATTTTTTTTATTGT
1 TTTATTTTTTTTCTTAT
*
22405 TTTATTGTTTTTTTCTTTT
1 TTTA-T-TTTTTTTCTTAT
22424 GCTTTA-TTTTTTTCTTAT
1 --TTTATTTTTTTTCTTAT
22442 TTTATTTTTATTTCTTTAT
1 TTTATTTTT-TTTC-TTAT
22461 TTATATTTT
1 TT-TATTTT
22470 CAAAAATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
16 4 0.07
17 8 0.15
18 16 0.30
19 16 0.30
20 6 0.11
21 4 0.07
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (17 bp):
TTTATTTTTTTTCTTAT
Found at i:22989 original size:16 final size:15
Alignment explanation
Indices: 22925--22991 Score: 62
Period size: 16 Copynumber: 4.3 Consensus size: 15
22915 TTTGATCTTC
*
22925 TTTTAATTTTTTTAT
1 TTTTATTTTTTTTAT
* * *
22940 CTTTGATTTTTTATAC
1 -TTTTATTTTTTTTAT
*
22956 TTTTATTTCTTATTAT
1 TTTTATTT-TTTTTAT
22972 TTGTTATTTTTTTTAT
1 TT-TTATTTTTTTTAT
22988 TTTT
1 TTTT
22992 TGTTCATATT
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
15 9 0.22
16 25 0.62
17 6 0.15
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTTTTAT
Found at i:23073 original size:19 final size:17
Alignment explanation
Indices: 23010--23073 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 17
23000 TTTTATAAAC
23010 TATTTTTTTTCTATTTTG
1 TATTTTTTTTCT-TTTTG
23028 TCATTTTTTCTTCATTTTTGG
1 T-ATTTTTT-TTC-TTTTT-G
* *
23049 AATTTTTATTACTTTTTG
1 TATTTTT-TTTCTTTTTG
23067 TATTTTT
1 TATTTTT
23074 CTAATTTTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
18 8 0.21
19 12 0.32
20 15 0.39
21 3 0.08
ACGTcount: A:0.14, C:0.08, G:0.06, T:0.72
Consensus pattern (17 bp):
TATTTTTTTTCTTTTTG
Found at i:23083 original size:29 final size:29
Alignment explanation
Indices: 23051--23110 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
23041 ATTTTTGGAA
23051 TTTTT-ATTACTTTTTGTA-TTTTTCTAAT
1 TTTTTCATTACTTTTTGTATTTTTTCT-AT
* *
23079 TTTTTCATTTCTTTTTTTATTTTTTCTAT
1 TTTTTCATTACTTTTTGTATTTTTTCTAT
23108 TTT
1 TTT
23111 GCGCTTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 5 0.18
29 16 0.57
30 7 0.25
ACGTcount: A:0.13, C:0.08, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTTCATTACTTTTTGTATTTTTTCTAT
Found at i:23094 original size:21 final size:21
Alignment explanation
Indices: 23069--23109 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
23059 ACTTTTTGTA
23069 TTTTTCTAATTTTTTC-ATTTC
1 TTTTT-TAATTTTTTCTATTTC
*
23090 TTTTTTTATTTTTTCTATTT
1 TTTTTTAATTTTTTCTATTT
23110 TGCGCTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTTAATTTTTTCTATTTC
Found at i:23147 original size:24 final size:24
Alignment explanation
Indices: 23120--23199 Score: 58
Period size: 25 Copynumber: 3.4 Consensus size: 24
23110 TGCGCTTTTG
23120 TTTATTTTTAATTTTTTTCTCTTT
1 TTTATTTTTAATTTTTTTCTCTTT
** * * *
23144 TTTAGTACTTATTTTTTTTTTC-CT
1 TTTA-TTTTTAATTTTTTTCTCTTT
* *
23168 TTTA-CTTTAA-TATTTTCTCTTAT
1 TTTATTTTTAATTTTTTTCTCTT-T
23191 TTTATTTTT
1 TTTATTTTT
23200 CCTTTTATTT
Statistics
Matches: 40, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
21 7 0.17
22 3 0.08
23 5 0.12
24 12 0.30
25 13 0.32
ACGTcount: A:0.15, C:0.10, G:0.01, T:0.74
Consensus pattern (24 bp):
TTTATTTTTAATTTTTTTCTCTTT
Found at i:24734 original size:14 final size:13
Alignment explanation
Indices: 24695--24736 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
24685 TAATATTATT
24695 TAAATAAATAATA
1 TAAATAAATAATA
**
24708 T-TCTAAATAATA
1 TAAATAAATAATA
24720 TAAATAAATTAATA
1 TAAATAAA-TAATA
24734 TAA
1 TAA
24737 TCATAATAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 10 0.43
13 5 0.22
14 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAATAAATAATA
Found at i:26186 original size:463 final size:465
Alignment explanation
Indices: 24827--27828 Score: 3604
Period size: 463 Copynumber: 6.5 Consensus size: 465
24817 ATAAATATTA
* ** * * *
24827 TATTTGCTTTAGAAGCATTTTTAGGAGAATTCATTAGTGCT-CAGGGAATTTGTTGGATGTTGTT
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGTT
* * * *
24891 GATACTTGGATGTCATCTGTGAAATCGTTATTGGCACTTGATGCGATTAATTGTGTGCTAACTTG
66 GATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTTG
* * ** **
24956 TTTTTGTACCTTATTCACAAACTCAAAGCTCGATGTTTTTGAAGCTTTTATGTTTTGCTTTGAAA
131 TTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGAAA
* * *
25021 ACCATTTCTGCTAGAGT-AGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTTAAATGGA
196 ACCATTTCTGCTGGAGTCA-AGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAAT-G-
* * * *
25085 AATGAATACATTGAATCCAATGTTTTAAACTCACTCAAATAGAGGAACATGATAACTCGTG--TT
258 ---G-A-A-A-TGAAT---A-GTTTTAAACTCGCTCAAACACAGAAACATGATAAC-C-TGCATT
* *
25148 GGTTTTAATTTTTCTCAGTATTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAAT
310 GGTTTTAATTTTTCACAGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAAT
* * *
25213 TTCATTTCTGAACAATTATGGGCATAAAACCATCTGCCCAATTTCAAATTGTGATAT-AAAACCA
375 TTCGTTTCTGAACAATTATGGGCGTAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCA
* * *
25277 TTTGTAAGGTTTTAATTTTTTATGCT
440 TTTGCACGGTTTTAATTTTTCATGCT
* * *
25303 TATTTGCTTTAGATGCATTTTTAGGAGAATCCATGGGTGCTCCAGGAAAATTGT-GAATTGCTGT
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGA-TGCTGT
* * * *
25367 TGATACTTGGATGTCATTTGTGAAATCATTATTGGCACTTGATGCGATTAATTGTGTGCTAACTT
65 TGATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTT
* * * * *
25432 GTTTTTATACCTTACGCACAAAGTCAAAGCTTGACATTTTTGCAGCTTTTATATTTTGCTTTGAA
130 GTTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGAA
* * * * *
25497 AACCATTTCTACTGGAGTCGAGCTTTAAACGTATGAAATGTTGTTTTAGCAAGCTTTTAAATGGA
195 AACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGA
*
25562 AATGAATAGTTTTAAACTCGCTCAAACACAGAAACGTGATAACCTGCATTGGTTTTAATTTTTCA
260 AATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTGCATTGGTTTTAATTTTTCA
** * * * *
25627 TGGTGTTAAGTGCAAGTCATGAAGGATTTTTGAGCTCAAAATATCAAAATTTCATTTCTGAGCAA
325 CAGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAA
* ** * * * * ** * *
25692 TTATGAGCAAAAAAACCATTTGTAAAATTTCAAATTGTGATACAAATGCTATTTGCATGGTTTTA
390 TTATGGGC-GTAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTA
*
25757 ATTTTTCATTCT
454 ATTTTTCATGCT
* * * * * *
25769 TATTTGCTTTAGATGCATTTTAAGGATAATTCATGGGTGTTCTA-GG-AATTAG-GGAAATGCAG
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATT-GTGG-GATGCTG
* * * * *
25831 TTGGTATTTTGATGTCATTTGTGAAATCGTTATT-GCGCTTGATGCAATTAACTATGTGCTAACT
64 TTGATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACT
* *
25895 TGTTTTTATATGTTACGCACAAACTCAAAGCTCCACATTTTTGAAGCTTTTATGTTTTGCTTTGA
129 TGTTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGA
* *
25960 AAACCATTTCTGCTGGAGTTAAGCGTTAAAAGTATGAAAT-TTGTTTTAGCAAGTTTTTAAATGA
194 AAACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGG
* * * *
26024 AAATTAATTGTTTTAAACTCGCTCAAACACAGAAATATGATAACCTACATTGGTTTTAA-TTTTC
259 AAATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTGCATTGGTTTTAATTTTTC
** * *
26088 ATGGTGTTAAGTATAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTTCGTTTCTGAAC
324 ACAGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAA-TTTCGTTTCTGAAC
* * *
26153 AATTATGGGCGTTAAAACCATTTGCACAATTTCAAATTGTGATACAAAAACCATTTGCATGGTTT
388 AATTATGGGCG-TAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTT
* *
26218 TAAATTTTAATGCT
452 TAATTTTTCATGCT
* * * *
26232 TATTTGCGTTAGATGCTTTTTTAGGAGAATTCATGAGTGCTCTAGGGAAATTGTGGGATGCTGTT
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGTT
* * ** *
26297 GATACTTCGATGTCATTCGGGAAAT-GTTTATTGGTACTTGATGCGATTAGCTGTGTGCTAACTT
66 GATACTTCGATGTCATTTGTGAAATCG-TTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTT
* * * * *
26361 GTTTTAATACGTTACGCACAAACTCAAAGTTCAACATTTTTTAAGCTTTTTTGTTTTGCTTTGAA
130 GTTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGAA
* * * *
26426 AACCATTTCTGCCGGAGTCAAGTGTTAAAAGTATGAAACGTTCTTTTAGCAAGTTTTTAAATGGA
195 AACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGA
* * *
26491 AATGAATAGTTTTAAACTCGCTCAAACACAAAAACATGATAACCTGCAATGGTTTTAGTTTTTCA
260 AATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTGCATTGGTTTTAATTTTTCA
* * *
26556 C-GATTTTTAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAAGATCAAAATTTCGTTTCTGAACA
325 CAG-TGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACA
* * * *
26620 ATTATGTGCGTAAAAAC-TCTGCACAA-TT---A-TGGGCGT-T-AAAACCATTTGCACGG-TTT
389 ATTATGGGCGTAAAACCATCTGCACAATTTCAAATTGTG-ATATAAAAACCATTTGCACGGTTTT
* *
26676 AATTTTTAATGAT
453 AATTTTTCATGCT
* *
26689 TATTTGCGTTAGATGCATTTTTAGGAGAATTCATGAGTGCTCCAGGGAAATTGTGGGATGCTGTT
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGTT
* * * *
26754 GATACTTCGATGTCATTTGGGAAATCTTTATTGGCGCTTGATGTGATTAGCTGTGTGCTAACTTG
66 GATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTTG
* * * * * * *
26819 TTTATATATGTTATGCACAAACTCAGAGCTTGACGTTTTTTAAGCTTTTTATGTTTTGCTTTGAA
131 TTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGC-TTTTATGTTTTGCTTTGAA
* * * ** *
26884 AACCATTTCTGCCGGAGTCGATCGTTAAAAGTATGAAACATTCTTTTAGCAAGTTTTTAAATGGA
195 AACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGA
* * * * *
26949 AATGAATAGTTTTAAACTCGCTCAAACACAAAAAAATGATAACTTGCAATGGTTTTAGTTTTTCA
260 AATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTGCATTGGTTTTAATTTTTCA
* * * *
27014 CAGTTTTAAGTGCAAGTCATTAAGGATTTTGGAGCTCAAAAGATC-AAATTTCGTTTCTGAACAA
325 CAGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAA
* * * * * *
27078 TTATGTGAGTAAAAAC-TCTGCACAATTTCAAATTGTGATATAAAAGCCATTTGCACAGTTTAAA
390 TTATGGGCGTAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAA
* *
27142 ATTTTCATGTT
455 TTTTTCATGCT
* *
27153 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGATGCTCCAGGGAAATTGTGGGCTGCTGTT
1 TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGTT
* * *
27218 GATACTT-GCATGTCATGTGTGAAATTGTTATTGTCGCTTGATGCGATTAACTGTGTGCTAACTT
66 GATACTTCG-ATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTT
* * * * *
27282 GTTTTTATACGTTACGCACAAACTCAAAGATCGACATTCTTAAAGCTTTTATATTTTGTTTTGAA
130 GTTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGAA
* * * * *
27347 AACCATTTCGGCTAGAGTCGAGCGTTAAAAGTATGAAATGTTTTTTTAGCAAGTTTTTAAATTGA
195 AACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGA
* * * * *
27412 AATGCATAGTTTTAAACTCACTCAAAACACACAAACATCATAACCTGCAGT-GTTTTCAATTTTT
260 AATGAATAGTTTTAAACTCGCTC-AAACACAGAAACATGATAACCTGCATTGGTTTT-AATTTTT
* * * * * *
27476 CACAGTGTTATGTGTAAGTCATTAAGGATTTTGGAGTTGAAAATATCAAAATCTCGTTTTTGAAC
323 CACAGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAAC
* * * * *
27541 AATTATGGGC---ATACCATCTACACAATTTCAAATTGTGATATAAAAACCGTGTGCACGATTTT
388 AATTATGGGCGTAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTT
27603 AATTTTTCATGCT
453 AATTTTTCATGCT
* * * * *
27616 TATTTTCTTTTGATGCATTTTT-GAGAGAATTCATGGGTACTCCAGGGAATTTGTGGGATGTTGT
1 TATTTGCTTTAGATGCATTTTTAG-GAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGT
* * * * * *
27680 TGATATTTGGATGTCATTTGTGAAATCGTTATTGGCACTTAATGCCATTAACTGTGTGATAACTT
65 TGATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTT
* * * * *
27745 GTTTTTATACATTACGCACAAACGCAAAGGTCG--ATGCTTTGAAAGCTTTTATGTTTTGATTTG
130 GTTTTTATACGTTACGCACAAACTCAAAGCTCGACAT-TTTTG-AAGCTTTTATGTTTTGCTTTG
*
27808 AAAACCATTTCTCCTGGAGTC
193 AAAACCATTTCTGCTGGAGTC
27829 GAGCTCTAAA
Statistics
Matches: 2211, Mismatches: 274, Indels: 95
0.86 0.11 0.04
Matches are distributed among these distances:
457 215 0.10
458 199 0.09
459 4 0.00
460 2 0.00
461 4 0.00
462 63 0.03
463 539 0.24
464 513 0.23
465 221 0.10
466 166 0.08
467 47 0.02
468 5 0.00
469 1 0.00
470 1 0.00
471 1 0.00
472 1 0.00
476 40 0.02
477 189 0.09
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (465 bp):
TATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGGAAATTGTGGGATGCTGTT
GATACTTCGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGCTAACTTG
TTTTTATACGTTACGCACAAACTCAAAGCTCGACATTTTTGAAGCTTTTATGTTTTGCTTTGAAA
ACCATTTCTGCTGGAGTCAAGCGTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAA
ATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTGCATTGGTTTTAATTTTTCAC
AGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAAT
TATGGGCGTAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAAT
TTTTCATGCT
Found at i:26646 original size:25 final size:25
Alignment explanation
Indices: 26612--26661 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26602 AAATTTCGTT
*
26612 TCTGAACAATTATGTGCGTAAAAAC
1 TCTGAACAATTATGGGCGTAAAAAC
* *
26637 TCTGCACAATTATGGGCGTTAAAAC
1 TCTGAACAATTATGGGCGTAAAAAC
26662 CATTTGCACG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (25 bp):
TCTGAACAATTATGGGCGTAAAAAC
Found at i:28774 original size:431 final size:424
Alignment explanation
Indices: 27952--28801 Score: 1226
Period size: 431 Copynumber: 2.0 Consensus size: 424
27942 AAAACAAGTT
*
27952 AGCACACAGTTAATCGCATCAAGCTCCAATAACGATTTCACAAATGACATCCAAATATCAACAGC
1 AGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGC
* * *
28017 ATCACACAAATTCCCTGGAGCACCCAAGAATTCTCCTAAAAATGCATAATAAGCATGAGAAATAA
66 ATCACACAAATTCCCTGGAGCACCCAAGAATTATCCTAAAAATGCATAATAAGAATGAAAAATAA
* **
28082 AAACCATGCAAATGGTTTTTATATCACAATTTGAGATTGCGCAGATGGTTTTTTTATGCCCATAA
131 AAACCATGCAAATGGTTTTTATATCACAATTTGAAATTGCGCAGATGACTTTTTTATGCCCATAA
* * * *
28147 TTGTTCAGAAAGGAAATTTTGATATTTTTAGCTCCAAAATCCTTCATGACTTGCACCTAACACCG
196 TTGTTCAGAAAGGAAATTTTGATATTTTTAACTCCAAAATACTTCATGACTTACACCTAACACCA
* ** * * *
28212 TGAAAAATTAAAATCAATGCAGGTGATCATATTTTTGTGTTTGAGCAAGTTTAAAACTATTGATT
261 TGAAAAAATAAAATCAATGCAGGTGATCATATTTTTGTGAATGAGCAAGTTTAAAACTAATCAGT
*
28277 TCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGAATCCAGCAGAAATGGTT
326 TCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGAATACAGCAGAAATGGTT
*
28342 TCCAAAGCAAAACATAAAAGCTTCAAAAGTAACA
391 TCCAAACCAAAACATAAAAGCTTCAAAAGTAACA
* * *
28376 AGCACACAGTTAATCGTATCAAAGCGCCAATAACGATTTCACAAATGATATCCAAATATCAAGAG
1 AGCACACAGTTAATCGCATC-AAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAG
* * *
28441 CATCCCACAAATTCCCTGGAGCACCTATGAATTATCCTAAAAATGCATCTAAAGCAAATAAGAAT
65 CATCACACAAATTCCCTGGAGCACCCAAGAATTATCCTAAAAATGCA--T------AATAAGAAT
* * *
28506 GAAAAATTAAAATCATGCAAATGGTTTTTATATCACAATTTGAAATTGTC-CATAT-ACTTTTTT
122 GAAAAATAAAAACCATGCAAATGGTTTTTATATCACAATTTGAAATTG-CGCAGATGACTTTTTT
** *
28569 -TGCCCATAATTGTTCAGAAATTAAATTTTGATTTTTTTAACTCCAAAATACTTCATGACTTACA
186 ATGCCCATAATTGTTCAGAAAGGAAATTTTGATATTTTTAACTCCAAAATACTTCATGACTTACA
*
28633 CCTAACACCATGAAAAAATAAAA-CAAATGCAGGTTATCAT-TTTTCTGTGAATGAGCAAGTTTA
251 CCTAACACCATGAAAAAATAAAATC-AATGCAGGTGATCATATTTT-TGTGAATGAGCAAGTTTA
*
28696 AAACTAATCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTC-AACTAC
314 AAACTAATCAGTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGAA-TAC
* *
28760 AGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAG
378 AGCAGAAATGGTTTCCAAACCAAAACATAAAAGCTTCAAAAG
28802 CGTGGAGCTT
Statistics
Matches: 378, Mismatches: 35, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
424 19 0.05
425 84 0.22
427 1 0.00
430 7 0.02
431 204 0.54
432 6 0.02
433 56 0.15
434 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (424 bp):
AGCACACAGTTAATCGCATCAAGCGCCAATAACGATTTCACAAATGACATCCAAATATCAACAGC
ATCACACAAATTCCCTGGAGCACCCAAGAATTATCCTAAAAATGCATAATAAGAATGAAAAATAA
AAACCATGCAAATGGTTTTTATATCACAATTTGAAATTGCGCAGATGACTTTTTTATGCCCATAA
TTGTTCAGAAAGGAAATTTTGATATTTTTAACTCCAAAATACTTCATGACTTACACCTAACACCA
TGAAAAAATAAAATCAATGCAGGTGATCATATTTTTGTGAATGAGCAAGTTTAAAACTAATCAGT
TCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCGAATACAGCAGAAATGGTT
TCCAAACCAAAACATAAAAGCTTCAAAAGTAACA
Found at i:29163 original size:433 final size:430
Alignment explanation
Indices: 28563--29432 Score: 1294
Period size: 433 Copynumber: 2.0 Consensus size: 430
28553 GTCCATATAC
* * *
28563 TTTTTTTGCCCATAATTGTTCAGAAATTAAATTTTGATTTTTTTAACTCCAAAATACTTCATGAC
1 TTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTTAACTCCAAAATACTTCATGAC
* *
28628 TTACACCTAACACCATGAAAAAATAAAACAAATGCAGGTTATCATTTTTCTGTGAATGAGCAAGT
66 TTACACCTAAAACCATGAAAAAATAAAACAAACGCAGGTTATCATTTTTCTGTGAATGAGCAAGT
*
28693 TTAAAACTAATCAGTTCCATTTAAAAACTTTCTAAAACAACATTTCATACTTTTAAAGCTCAACT
131 TTAAAACTAATCAGTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCAACT
* * *
28758 ACAGCATAAATGGTTTCCAAACCAAAACGTAAAAGCTTCAAAAGCGTGGAGCTTTGAGTTTGTGC
196 ACAGCAGAAATGGTTTCCAAACCAAAACATAAAAGCTTCAAAAGCATGGAGCTTTGAGTTTGTGC
* *
28823 GTAATGTATAAAAACAAGTTAGCATACAGTTAATCGCATCAAGCTCCAATAACGATTTCACAAAT
261 GTAATGTATAAAAACAAGTTAGCACACA---AATCGCATCAAGCACCAATAACGATTTCACAAAT
*
28888 GACATCCAAATATCAACAGCATCCCAAAAATTCCCTGGAGCACCCATCAATTCTCCTAAAATTTC
323 GACATCCAAATATCAACAGCATCCCAAAAATTCCCTGGAGCACCCATCAATTCTCCTAAAATTGC
* *
28953 AGCT-GATGCAAATAAGCATGAAAAATTAAAACTGTGCAGATGG
388 AGCTAGA-GCAAATAAGCATGAAAAATTAAAACTGTACAAATGG
* * *
28996 TTTTTATGCCCATAATTGCTT-AGAAATGAAATTTTGATATTTTTAGCTCCAAAATCCTTCTTGA
1 TTTTTATGCCCATAATTG-TTCAGAAATGAAATTTTGATATTTTTAACTCCAAAATACTTCATGA
** * * * ** *
29060 CTTGTACCTAAAACCGTGAAAAATTAAAACCAACGCAGGTTATCATTTTTCTGTGTTTGAGCGAG
65 CTTACACCTAAAACCATGAAAAAATAAAACAAACGCAGGTTATCATTTTTCTGTGAATGAGCAAG
* * * * *
29125 TTTGAAACTATTCATTTCCATTTAAAAACTTACTAAAACAATATTTCATACTTTTAAAGCTCGAC
130 TTTAAAACTAATCAGTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCAAC
* * * * *
29190 TCCAGCAGAAATGGTTTCCTAAGCAAAACATATAAGCTTCAAAAGCATTGAGCTTTGAGTTTGTG
195 TACAGCAGAAATGGTTTCCAAACCAAAACATAAAAGCTTCAAAAGCATGGAGCTTTGAGTTTGTG
** *
29255 CGTAATGTATAAAAACGTGTTAGCACACAATTCGCATCAAGCACCAATAACGATTTCACAAATGA
260 CGTAATGTATAAAAACAAGTTAGCACACAAATCGCATCAAGCACCAATAACGATTTCACAAATGA
* * * *
29320 CATCCAAATATCAGCAGCATCTCACAAATTCCCTGGAGCACCCATCAATTCTCCTAAAATTGCAT
325 CATCCAAATATCAACAGCATCCCAAAAATTCCCTGGAGCACCCATCAATTCTCCTAAAATTGCAG
*
29385 CTAGAGCAAATAAGCATGAAATATTAAAACTGTACAAATGG
390 CTAGAGCAAATAAGCATGAAAAATTAAAACTGTACAAATGG
29426 TTTTTAT
1 TTTTTAT
29433 ATCACAATTT
Statistics
Matches: 392, Mismatches: 43, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
430 136 0.35
431 2 0.01
433 252 0.64
434 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (430 bp):
TTTTTATGCCCATAATTGTTCAGAAATGAAATTTTGATATTTTTAACTCCAAAATACTTCATGAC
TTACACCTAAAACCATGAAAAAATAAAACAAACGCAGGTTATCATTTTTCTGTGAATGAGCAAGT
TTAAAACTAATCAGTTCCATTTAAAAACTTACTAAAACAACATTTCATACTTTTAAAGCTCAACT
ACAGCAGAAATGGTTTCCAAACCAAAACATAAAAGCTTCAAAAGCATGGAGCTTTGAGTTTGTGC
GTAATGTATAAAAACAAGTTAGCACACAAATCGCATCAAGCACCAATAACGATTTCACAAATGAC
ATCCAAATATCAACAGCATCCCAAAAATTCCCTGGAGCACCCATCAATTCTCCTAAAATTGCAGC
TAGAGCAAATAAGCATGAAAAATTAAAACTGTACAAATGG
Found at i:31974 original size:468 final size:470
Alignment explanation
Indices: 30426--32290 Score: 2239
Period size: 481 Copynumber: 4.0 Consensus size: 470
30416 TTATGGGCAT
* * *
30426 AAAAACCATTTGCACAGTTTTAATCTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGGGAATT
1 AAAAACCATTTGCACAGTTTTAATTTTTCATGCTTATTTACTTTAGATGCATTTTTAGGAGAATT
* * *
30491 CATGTGTGCTCTAGGGAATTTGTGGGATGCTGTTGATATTTGGATATCATTTGTGAAATCGTTAT
66 CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTAT
* * * * * * *
30556 TTGCACCTGATGCGA-TAATTGTGTGCTAACTTGTTTTTGTACCTTATGCGCAAACTCAAAGCTT
131 TGGCACTTGATGCGATTAACTGTGTGCTAACTTGTTTTTATACCTTACGCACAAACTCAAAGCTC
* *
30620 GACATTTTTGACGCTTTTCTATTTTGCTTTGAAAACCATATT-TGCTGGAGTCGAGCTTTAAAAG
196 GACATTTTTGAAGCTTTTATATTTTGCTTTGAAAACCAT-TTCTGCTGGAGTCGAGCTTTAAAAG
*
30684 TATGAAATGTTGTTTTAGCAAGTTTTTAAATTTAAATGAATACACTGAATCCAATGTTTTAAACT
260 TATGAAATGTTGTTTTAGCAAG---TT---TTTAAATGGA-ACACTGAAT-C-ATGTTTTAAACT
* * * * * *
30749 CCCTCAAGCATAGAAACATGATAACCTGCAATGGTTTTAATTTTTCACGGTGTTAATTGTAAGTC
316 CGCTCAAACACAGAAACATGATAACCTACATTGGTTTTAATTTTTCACGGTGTTAAGTGTAAGTC
* *
30814 ATGAAGGATTTTGGAGCTCAAAATATCAATATTTCGTTTCTGAACAATTATGTGCATAAAAACCA
381 ATGAAGGATTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCATAAAAACCA
* *
30879 TCTACACAATTTCAAATTGTGATAG
446 TCTGCACAATTTCAAATTGTGATAC
* * * **
30904 AAAAATCATTTGCACGGTTTTAATTTTTAATGCTTATTTACTTTAGATGCATTTTTAGGAGAGGT
1 AAAAACCATTTGCACAGTTTTAATTTTTCATGCTTATTTACTTTAGATGCATTTTTAGGAGAATT
* *
30969 CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATACTTGGATGTCATTTGTGAAATCATTAT
66 CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTAT
* * * * *
31034 TGGCACTTGATTCGATTAACTGTGTGCTAACTTGTTTTTATACCTTAAGCCCGAACTCAAAGCTT
131 TGGCACTTGATGCGATTAACTGTGTGCTAACTTGTTTTTATACCTTACGCACAAACTCAAAGCTC
** * * * * *
31099 GATGTTTTTGAACCTTTTATGTTTTGCTTTGAAAACTATTTCTGCTAGAGTAGAGCTTTAAAAGT
196 GACATTTTTGAAGCTTTTATATTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGT
* * * * *
31164 ACGGAATGTTGTTTTAGCATGTTTTTAAATGAAAATGAATGCATTGAATCCAATGTTTTAAATTC
261 ATGAAATGTTGTTTTAGCAAGTTTTTAAATG-----GAA--CACTGAAT-C-ATGTTTTAAACTC
* * * ** *
31229 GCTCAAATAGAGAAACATGATAA-CTCACATTGGTTTCAATTTTTCTTGGTATTAAGTGTAAGTC
317 GCTCAAACACAGAAACATGATAACCT-ACATTGGTTTTAATTTTTCACGGTGTTAAGTGTAAGTC
* * * **
31293 ATGTAGTATTTTTGGAGCTCAAAATATCAAAGTTTAATTTCTGAACAATTATGGG-ATTTAAAAA
381 ATGAAGGA-TTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCA--TAAAAA
* * *
31357 CCATCTGCACAATTTCAAATTCTGAAAT
443 CCATCTGCACAATTTCAAATTGTGATAC
* ** * * *
31385 AAAAACCATTTTCACCTTTTTAATATTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAACT
1 AAAAACCATTTGCACAGTTTTAATTTTTCATGCTTATTTACTTTAGATGCATTTTTAGGAGAATT
* * *
31450 CATGGGTGCCCCAGGGAATTTCTGGGATGCTGTTGATATTTGGATGTCACTTGTGAAATCGTTAT
66 CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTAT
* * *
31515 TGGCGCTTGATGTGATTAACTGTGTGCTAACTTGTTTTTTTACCTTACGCACAAACTCAAAGCTC
131 TGGCACTTGATGCGATTAACTGTGTGCTAACTTGTTTTTATACCTTACGCACAAACTCAAAGCTC
** * * *
31580 GATGTTTTTGAGGCTTTTATATTTTTCTTTGAAAACCATTTCTGTTGGAGTCGAGCTTTAAAAGT
196 GACATTTTTGAAGCTTTTATATTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGT
31645 ATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAA-A-TGAAT-A-GTTTTAAACTCGCTCAAACA
261 ATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAACACTGAATCATGTTTTAAACTCGCTCAAACA
* * * * *
31706 CAGAAACATGAAAACTTACATTGGTTTTAATTTCTT-ATGGTGTTAAGTGCAGGTCATGAAGGAT
326 CAGAAACATGATAACCTACATTGGTTTTAATTT-TTCACGGTGTTAAGTGTAAGTCATGAAGGA-
** * * * *
31770 TTTTTTTAGCTCAAAATATCAAAATTTCGTCTCTGAGCAATTATGGGCAAAAAAACCATTTGCAC
389 -TTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCATAAAAACCATCTGCAC
31835 AATTTCAAATTGTGATAC
453 AATTTCAAATTGTGATAC
* * *
31853 AAAAACCATTTGCACAGTTTTAATTTTTCATTCTTATTTACTTTAGATGCATGTTTAGGATAATT
1 AAAAACCATTTGCACAGTTTTAATTTTTCATGCTTATTTACTTTAGATGCATTTTTAGGAGAATT
* * * *
31918 CATGGGTGTTCCAGGGAATTTG-GGAAATGCTGTTGGTATTTTGATGTCATTTGTGAAATCGTTA
66 CATGGGTGCTCCAGGGAATTTGTGG-GATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTA
* * * * * *
31982 TTTGCACTTGATGCGATTAACTATGTGCTAACTTGTTTTTATACGTGACGCACAAACTCAACGCC
130 TTGGCACTTGATGCGATTAACTGTGTGCTAACTTGTTTTTATACCTTACGCACAAACTCAAAGCT
* *
32047 CGACATTTTTGAAGC-TTT-TA-TTT--TTTGAAAACCATTTCTGCTGGAGTTGAGCATTAAAAG
195 CGACATTTTTGAAGCTTTTATATTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAAG
* *
32107 TATGAAATGTTGTTTTAGCAAGTTTTTAATTGGAA-A-TTAAT--TGTTTTAAA----CTCAAAC
260 TATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAACACTGAATCATGTTTTAAACTCGCTCAAAC
* * *
32164 ACAGAAATATGATAACCTGCATTGGTTTTAATTTTTCACGGTGTT-AGATATAAGTCATGAAGGA
325 ACAGAAACATGATAACCTACATTGGTTTTAATTTTTCACGGTGTTAAG-TGTAAGTCATGAAGGA
* * * * * * *
32228 TTTTAGAGTTGAAAACATCAAAATTTCGTTTCTGGACAATTATGGGCATTAAAACCATTTGCA
389 TTTTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCATAAAAACCATCTGCA
32291 TGGTTTAATT
Statistics
Matches: 1200, Mismatches: 166, Indels: 63
0.84 0.12 0.04
Matches are distributed among these distances:
457 53 0.04
458 4 0.00
459 57 0.05
463 81 0.07
465 3 0.00
466 2 0.00
467 5 0.00
468 273 0.23
469 44 0.04
470 1 0.00
472 5 0.00
473 9 0.01
476 5 0.00
477 1 0.00
478 134 0.11
479 194 0.16
480 41 0.03
481 288 0.24
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (470 bp):
AAAAACCATTTGCACAGTTTTAATTTTTCATGCTTATTTACTTTAGATGCATTTTTAGGAGAATT
CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTAT
TGGCACTTGATGCGATTAACTGTGTGCTAACTTGTTTTTATACCTTACGCACAAACTCAAAGCTC
GACATTTTTGAAGCTTTTATATTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGT
ATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAACACTGAATCATGTTTTAAACTCGCTCAAACA
CAGAAACATGATAACCTACATTGGTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATT
TTGGAGCTCAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCATAAAAACCATCTGCACAAT
TTCAAATTGTGATAC
Found at i:33667 original size:470 final size:464
Alignment explanation
Indices: 32278--34802 Score: 2795
Period size: 469 Copynumber: 5.5 Consensus size: 464
32268 TATGGGCATT
* * *
32278 AAAACCATTTGCATGGTTTAATTTTTCATGCTTATTTG-TGTTTGATGCATTTTTAGGAGAATTG
1 AAAACCATTTGCACGGTTTAATTTTTCATGCTTATTTGCT-TTAGATGCATTTTTAGGAGAATTC
* * * * * * *
32342 ATGGGTGCTCCAGTGAAATTGTGGGATGCTATTGATACTTCGATGTCATTTGGGAAATCATTATT
65 ATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATT
* * ** *
32407 GGCGCTTGATGCAATTAGCTGTGTGC-TAGCTTGTTTTTATACGTTACAAACAAACTCAAAGCTT
130 GGCGCTTGATGCAATTAACTGTGTGCTTA-CTTGTTTTTATACATTACGCACAAACTCAAAGCTC
* * ** *
32471 GACTTTTTTGAAGCTTTTATGTTTTTCTTTGAAAACCATTTCAACCGGAGTCAAGCGTTAAAAGT
194 GACGTTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCAAGC-TTAAAAGT
** * * * * *
32536 ATGAAACATTCTTTTGGCAAGTTTTTAAGTGGAATTGAATAGTTTTAAACTCGCTCAAACACAAA
258 ATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGA
* * * * *
32601 AACATGATAACCTGCAATGATTTT-AGTTTTTCACGGTTTTAAGTGCAAGTCATGAAGGATTTTG
323 AACATGATAACCTGCATTGGTTTTCA-TTTTTCATGGTGTTAGGTGCAAGTCATGAAGGATTTTG
* * * * * * * *
32665 GAGCTCAAAAGATC-AAATTTCGTTTCTGAACAATTATGTGCGTAAAAA-C-TCTCCAGAATTTG
387 GAGCTAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACAATTTC
32727 AAATTGTGATATA
452 AAATTGTGATATA
* * * *
32740 AAAGCCATTTGCACAGTTTAAAATTTTCATGCTTATTTGCTTTAGATGCATTTTTAGCAGAATTC
1 AAAACCATTTGCACGGTTT-AATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTC
* * * * *
32805 ATTGATGCTCCAGGGAATTTGTGGGATGCTGTTGATACTTGGATGCCATTTGTGAAATTGTTATT
65 ATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATT
* * *
32870 GTCGCTTGATGCGATTAACTGTGTG-TTAACTTGTTTTTATACGTTACGCACAAACTCAAAGCTC
130 GGCGCTTGATGCAATTAACTGTGTGCTT-ACTTGTTTTTATACATTACGCACAAACTCAAAGCTC
* * * * *
32934 GACGTTTTTAAAGCTTTTATTTTTTTTTTCTTTGACAACCATTTCTGCTAGAGTCGAA-CGTTAA
194 GACGTTTTTGAAGCTTTTA---TGTTTTGCTTTGAAAACCATTTCTGCTGGAGTC-AAGC-TTAA
* * ** * *
32998 AAGTATGAAAT-TTTTTTTAGCAAGATTTTAAATTCAAATGCATAGTTTTAAACTCACTCAAAAC
254 AAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTC-AAAC
* * * * * *
33062 ACAGAAAGATGATAACCTACATTGG-TTTCAATTTTTCGTGGTATTATGTGTAAGTCATGAAGGA
318 ACAGAAACATGATAACCTGCATTGGTTTTC-ATTTTTCATGGTGTTAGGTGCAAGTCATGAAGGA
* * * *
33126 TTTTGGAGATGAAAATATCAAAATTTCGTTTCTGAACAATTATGGGCATAAAAACCATCTACACA
382 TTTTGGAGCTAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACA
33191 ATTTCAAATTGTGATATA
447 ATTTCAAATTGTGATATA
* ** *
33209 AAAACCATTTGCACGGTATTAATCTGCCACGCTTATTTGCTTTAGATGCATTTTTTAGGAGAATT
1 AAAACCATTTGCACGGT-TTAATTTTTCATGCTTATTTGCTTTAGATGCA-TTTTTAGGAGAATT
* * *
33274 CATGGGTGCTCCAGGGAATTTGTGTGATGTTGTCGATATATTTGGATGTCATTTGTGAAATCGTT
64 CATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTG--ATATTTGGATGTCATTTGTGAAATCGTT
* * * *
33339 ATTGGTGCTTGATGCAATTAACTGTGTGCTTGCTTGTTTTTATACATTATGCACAAACTCAAGGC
127 ATTGGCGCTTGATGCAATTAACTGTGTGCTTACTTGTTTTTATACATTACGCACAAACTCAAAGC
* * **
33404 TCAACGTTTTTGAAGCTTTTATATTTTGCTTTGAAAACTGTTTCTGCTGGAGTCAAGCTTGAAAA
192 TCGACGTTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCAAGCTT-AAAA
* * *
33469 GTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGTTCAATCATA
256 GTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACA
* * * *
33534 GAAACACGATAACCTGCGTTGGTTTTCATTTTTCATGGTGTTAGGTGCATGTCATGAAGTATTTT
321 GAAACATGATAACCTGCATTGGTTTTCATTTTTCATGGTGTTAGGTGCAAGTCATGAAGGATTTT
* * * *
33599 GGAGTTAAAAAAAATCAAAATTTCATTTCTCAACAATTATGGGCATAAAAACCATATGCACAATT
386 GGAGCT-AAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACAATT
33664 TCAAATTGTGATATA
450 TCAAATTGTGATATA
* * * * ** *
33679 AAAACCTTTTGCACGATTTTTATTTTTCATTCCCATTTGCTTTAGTTGCATTTTTAGGAGAATTC
1 AAAACCATTTGCACG-GTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTC
* *
33744 ATGGGTGCTCCAGGGAATTTGTGTGATGCTGTTGATATTTGGATGTCATTTGTGAAATCATTATT
65 ATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATT
* * *
33809 GGAGCTTTGATACAATTAACTGTGTGCTTACTTGTTTTTTATTCATTACGCACAAACTCAAAGCT
130 GGCGC-TTGATGCAATTAACTGTGTGCTTACTTG-TTTTTATACATTACGCACAAACTCAAAGCT
* * * * * *
33874 CGACGCTTTTGAAGCTTTTGTGTTCTGCTTTGGAAACCATTTTCTGGCTGGAATCGAGCTTTACA
193 CGACGTTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCA-TTTCT-GCTGGAGTCAAGC-TTA-A
* *
33939 AAGTATGAAAATGTTGTTTTAGTAACG-TTTTAAATGAAAAT-AATAG-TTTAAACTCGCTC-AA
254 AAGTATG-AAATGTTGTTTTAGCAA-GTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAA
* * *
34000 CACAGAAAAATGATAACCTGCATTGGTTTTAATTTTTCATGGTGTTAGGTGCAAGTCATGAACGA
317 CACAGAAACATGATAACCTGCATTGGTTTTCATTTTTCATGGTGTTAGGTGCAAGTCATGAAGGA
*
34065 TTTTGGAGCTAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCAAA
382 TTTTGGAGCTAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACA
*
34130 ATCTCAAATTGTGATATA
447 ATTTCAAATTGTGATATA
* * * * * * **
34148 AAAACCATTTGCATGGTTTTTATTTTTCATGCTTGTTTGCTTCAGCTGAATTTTTAATAGAATTC
1 AAAACCATTTGCACGG-TTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTC
* * *
34213 ATGGGT-CTTCCAAGGAATTTGTGGGATGCCGGTGATATTTGGATGTCATTTGTGAAATCGTTAT
65 ATGGGTGC-TCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTAT
* * *
34277 TGGCGCTTGATGCGATTAACTATGTGCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTC
129 TGGCGCTTGATGCAATTAACTGTGTGCTTACTTGTTTTTATACATTACGCACAAACTCAAAGCTC
* * * * *
34342 GACGCTTTTGAAGCTTTTACGTTTTGCTTCGGAAACCATTTATGCTGTG-GTCGAA-CTTTAAAA
194 GACGTTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTG-GAGTC-AAGC-TTAAAA
* * * *
34405 ATATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATAAATAGTTTTAAACTC-CGTC-ATCAC
256 GTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGC-TCAAACAC
* * * *
34468 A-AAGACATGAAAACCTG---T-GTTTGC--TTTTAAT--T-TT---T-C-A--C------GATG
320 AGAA-ACATGATAACCTGCATTGGTTTTCATTTTTCATGGTGTTAGGTGCAAGTCATGAAGGATT
* ** * * * *
34510 TT--AGGT-CCAA-GTCAAAATTTCATTTCTGACCAATTATGGGCATAAAAACCATATGCACGAT
384 TTGGAGCTAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACAAT
*
34571 GTCAAATTGTGATATA
449 TTCAAATTGTGATATA
* * ** * * *
34587 AAAACCATTTGCATGGTTTTAATTTTTCATGCTTATTTGCATCGGCTGAATTTTTAGAAGAATTC
1 AAAACCATTTGCACGG-TTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTC
* *
34652 ATGGGTGTTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTATGAAATCGTTATT
65 ATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATT
* * * * * * * * *
34717 GGCGCTTGTTGCGATTAACTATGTGCTAACATGGTTTTATACATTATGCACAAAGTCAAAGC-CA
130 GGCGCTTGATGCAATTAACTGTGTGCTTACTTGTTTTTATACATTACGCACAAACTCAAAGCTCG
*
34781 ACGCTTTTGAAGCTTTTATGTT
195 ACGTTTTTGAAGCTTTTATGTT
34803 GATGATATTT
Statistics
Matches: 1789, Mismatches: 231, Indels: 110
0.84 0.11 0.05
Matches are distributed among these distances:
438 22 0.01
439 236 0.13
440 2 0.00
441 3 0.00
443 5 0.00
449 1 0.00
451 1 0.00
452 1 0.00
453 1 0.00
456 2 0.00
457 1 0.00
459 6 0.00
461 4 0.00
462 18 0.01
463 195 0.11
464 17 0.01
465 80 0.04
466 117 0.07
467 133 0.07
468 56 0.03
469 451 0.25
470 266 0.15
471 25 0.01
472 114 0.06
473 31 0.02
474 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (464 bp):
AAAACCATTTGCACGGTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCA
TGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTG
GCGCTTGATGCAATTAACTGTGTGCTTACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGA
CGTTTTTGAAGCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCAAGCTTAAAAGTATG
AAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAC
ATGATAACCTGCATTGGTTTTCATTTTTCATGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGC
TAAAAATATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATCTGCACAATTTCAAAT
TGTGATATA
Found at i:34899 original size:121 final size:122
Alignment explanation
Indices: 34684--34921 Score: 345
Period size: 121 Copynumber: 2.0 Consensus size: 122
34674 GGGATGCTGT
* * *
34684 TGATATTTGGATGTCATTTATGAAATCGTTATTGGCGCTTGTTGCGATTAACTATGTGCTAACAT
1 TGATATTTGGATGTCATTTATGAAATCGTTATCGGAGCTTGATGCGATTAACTATGTGCTAACAT
*
34749 GGTTTTATACATTATGCACAAAGTCAAAGC-CAACGCTTTTGAAGCTTTTATGTTGA
66 GGTTTTATACATTATGCACAAAATCAAAGCTCAACGCTTTTGAAGCTTTTATGTTGA
* * * *
34805 TGATATTTGGATGTCATTTGTGAAATCGTTATCGGAGCTTGATGCGATTAACTGTGTTCTAACTT
1 TGATATTTGGATGTCATTTATGAAATCGTTATCGGAGCTTGATGCGATTAACTATGTGCTAACAT
* * **
34870 GTTTTTGTACATTATGCACAAACAT-AAAGCTCGTCGCTTTTGAAGCTTTTAT
66 GGTTTTATACATTATGCACAAA-ATCAAAGCTCAACGCTTTTGAAGCTTTTAT
34922 TTTTGCTTTG
Statistics
Matches: 103, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
121 83 0.81
122 20 0.19
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (122 bp):
TGATATTTGGATGTCATTTATGAAATCGTTATCGGAGCTTGATGCGATTAACTATGTGCTAACAT
GGTTTTATACATTATGCACAAAATCAAAGCTCAACGCTTTTGAAGCTTTTATGTTGA
Found at i:38082 original size:466 final size:466
Alignment explanation
Indices: 35944--39488 Score: 4245
Period size: 467 Copynumber: 7.7 Consensus size: 466
35934 AATTCATAGG
* * ** * *
35944 TGCTATTGATATTTGGATGTCATTTCTGAAATCACTATTGGCGTTTGATGCGATTAACTATGTGC
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGC
* ** * * *
36009 TAACTTGTTTTTATACATTACGCACAAACTGAAAGCTTAACGCTTTTGAATCTTTTATGTTTTGC
66 TAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTGC
* * * * *
36074 TTTGAAAACCATTTCTGCTGGAGTCGAGTTTTAAAAGTATAAAATGTTGTTTTAGCAAGTTTGTA
131 TTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTTA
* *
36139 AGTGGAAATGAATAGTTTTAAACTCGCTCAAACACA-AAAACATGATAACCTGCTTTGGTTTTAA
196 AATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAA-ATGATAACCTGCATTGGTTTTAA
*** * * * * * * * *
36203 TTTTTCGTTGCGTTAAGTGTAAGTCATAAAGGATTTTGGAGCTGAAAATAT-GAAAGTTCTATGT
260 TTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTC-ATTT
* *
36267 CTGAACAATTATGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTCCA
324 CTGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCA
* * *
36332 TGGTTTTAGTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATTGGTGCTCCAG
389 CGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAG
*
36397 GTAATTTGTGGGA
454 GGAATTTGTGGGA
* * ** * * * **
36410 TGCTGTTGATATTTTGGATGCCATTTGCGAAATTTTTGTTGGTGCTTAACACGATTAACTGTGTG
1 TGCTGTTGATA-TTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTG
* * *
36475 CTAACTTGTTTTTACACATTACGCACAAACTCAAAGCTCGACACTTTTGAATCTTTTATGTTTTG
65 CTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTG
* * * * * *
36540 CTTTGAAAACCATTTCTACTGGAGTAGAGCTTTAAAAGTATGAGATGTTGTTTTAGCATGTTTTT
130 CTTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTT
* *
36605 AAATGGAAATGAATAGTTTTAAACTCTCTCAAACACAGAAAAATGATAACCTGCATTAGTTTTAA
195 AAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAA
* * * ** * *
36670 TTTTTTATGGTATTAGGCACATGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTC
260 TTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTCATTTC
* ** * * *
36735 TTAACAATTATCAGCATAAAAACCATCTGCCCAATTTCAAATTGTGATATAAAAACCATTTGCAT
325 TGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCAC
* * * * ** * * * *
36800 GGTTTTAACTTTTCATACTTATTTGCTTCAGATGAATTTTTAATAGAATTCTTGGGCGCTGCATG
390 GGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGG
36865 GAATTTGTGGGA
455 GAATTTGTGGGA
* * *
36877 TACTGTTGATATTTGGA--TCATTTGTGAAATCGTTATTGGCTC-T--T--GA-T-AC-G-ATGC
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGC
* * * * * *
36931 TAAGTTCTTTTTATACATTATGCACAAACTCATAGCTCGACGCTTTT-AAGCTTTTACGTTTTGG
66 TAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTGC
* * *
36995 TTTGGAAACCATTTAC-GCTGTAGTCGAGCTTTAAAAGTATGAAATGTTATTTTAGAAAGTTTTT
131 TTTGGAAACCATTT-CTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTT
* * * * * *
37059 AAATGGAAATGATTA-TTTTAACCTCGCTTAATCACA-AAAATATGATAACCTGCGTTGGTTTAA
195 AAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAA-ATGATAACCTGCATTGGTTTTA
** * *
37122 ATTTTTCACAATGTTAGGTGCAAGTCATGAAGTATTTTGGA-CTTAAAAAAAATCAAAATTTCAT
259 ATTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGC-T-AAAAATATCAAAATTTCAT
* * * *
37186 TTCTGAACATTTATGGGCAAAAAAACCATATGCA-ACATCTCAAATTGTGATATAAAAACAATTT
322 TTCTGAACAATTATGGGCATAAAAACCATCTGCACA-ATCTCAAATTGTGATATAAAAACCATTT
* * *
37250 GCATGGTTTTTAATTTTTCATGCTTATTTGCATTAGATGCATTTTAAGGAGAATTCATGGGTGCT
386 GCACGG-TTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCT
* *
37315 CCATGGAATTTGTTGGA
450 CCAGGGAATTTGTGGGA
* * * * *
37332 TGCTGTTGATATTTGGATGTCATTTTTCAAATCGTTATTGGCACTTTGATGTGATTAAATGTGTG
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGC-TTGATGCGATTAACTGTGTG
* * * *
37397 CTTACTTGGTTTTATACATTACGCACAAACTCAAAG--CG-CA------AAAC---TATGTTTTG
65 CTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTG
* *
37450 CTTTAGAAACCATTTCTGCTGGAGTCGAGCTTTAAAACTATGAAATGTTGTTTTAGTAAGTTTTT
130 CTTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTT
* **
37515 AAATGGAAATGAATAGTTTTAAACTCGCTAAAACACAGAAAAATGATAAGTTGCATTGGTTTTAA
195 AAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAA
* *
37580 TTTTTTACGGTGTTAGGTGCAAGTCATGAAGGATTTTAGAGCTAAAAATATCAAAATTTCATTTC
260 TTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTCATTTC
* *
37645 TGAACAATAATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCCC
325 TGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCAC
* * * *
37710 AGTTTTAATTTTTCATGCTTATATGCTTTAGATGCATTTTTAGGACAATTCATAGGTGCTCCAGG
390 GGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGG
* *
37775 GATTTTGTGTGA
455 GAATTTGTGGGA
* *
37787 TGCTGTTTATATTTGGATGTTATTTGTGAAATCGTTATTGGCGCTTTGATGCGATTAACTGTGTG
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGC-TTGATGCGATTAACTGTGTG
* * * *
37852 CTAACTCGTTTTCATACATTACGCACAAACTCAAAGCTTGACACTTTTGAAG-TTTTACATTTTG
65 CTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTG
* * * ** * *
37916 CTTTGGAAACCATTTCTACTGGAGTCAAGTTTTAATTGTATGAAATGTTATTTTAGTACGTTTTT
130 CTTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTT
* * * * *
37981 AATTTGAAATGAATAGTTTTAAACTAGCTCAAACACAGACAAATGATTACCTGCATTGGTTTTAA
195 AAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAA
* * * * * *
38046 TTTTTCATGGTGTTATGTGGAACTCATGATGGATTTTCGAGCTAAAAATATCAAAATTTCATTTC
260 TTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTCATTTC
* * *
38111 GGAACAATTATGGGCATAAAAACCATCTGCACGATCTCAAATTGTGATATAAAAACCATTTGCAT
325 TGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCAC
* ** * * * *
38176 GGTTTTTAATTTTTCTTGCTTATTTGCTTCGGCTGC-CTTTTAGGACAATTCATAGGTGCTCCAG
390 GG-TTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAG
38240 GGAATTTGTGGGA
454 GGAATTTGTGGGA
* *
38253 AGCTGTTGATATTTGGATGTCATTTGTGAAATTC-TTATTGGCGCTTTGATGCGATTAACTATGT
1 TGCTGTTGATATTTGGATGTCATTTGTGAAA-TCGTTATTGGCGC-TTGATGCGATTAACTGTGT
* * * * * *
38317 GCTAACTTGTTCTTATACATTACACACAAATTCAAAGCTTGACTCTTTTGAAGCTTTTACATTTT
64 GCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTT
* * ** * *
38382 GCATTGGAAACCATTTATGCTGTTGTCAAGCTTTAAAAGTATGAAATGTTCTTTTAGTAAGTTTT
129 GCTTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTT
* * ** * *
38447 TAAATGGAAATGAGTAGTTTTAAACTTGCTCAATGATAGAAACATGATAACCTGCATTGGTTTTA
194 TAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTA
* * * * * * *
38512 ATTTCTCACGGTGCTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATGAAAATTTCGTTT
259 ATTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTCATTT
* * * * *
38577 CTGAACAATTATGGGCATAAAAACCATTTGCACAATTTCAAATTATGATATAAAAACCGTTGGCA
324 CTGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCA
* *
38642 CGGTTTTAATTTTTCATGCTTATTTGCTTTGGATGCATTTTTTGGAGAATTCATGGGTGCTCCAG
389 CGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAG
*
38707 GGATTTTGTGGGA
454 GGAATTTGTGGGA
* * * * *
38720 TGTTGTTGATATTTGGACGTCATTTGTGAAATCGTTATTGGAGCTTGATTCAATTAACTGTGTGC
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGC
* ** * ** * * *
38785 TAACTTTTTTTTATATGTTACGCACAAACTAAAAGCTCGATGCCTTTGAAGCCTTTACGTTTTGT
66 TAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTGC
* * * *
38850 TTTGGAAACCATTTATGCTGTAGTCGAGCTTTATAAGTATGAAATGTTGTTTTAGAAAGTTTTTA
131 TTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTTA
* * * * * * *
38915 ATTGGAAATGAATACTTTTAAACTCACTCAAACACAGAAAAATGATAACCCGCGTTGCTTTTAAG
196 AATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAAT
* * * * * * *
38980 TTTTCACAGTATTAGGTGCAAGTCATCAAGTATTTT-GAGTTAGAAAA-ATCAAATTTTAATTTC
261 TTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTA-AAAATATCAAAATTTCATTTC
* * *
39043 TGAACAATTATGGGCGTAAAAACCATATGCACAATCTCAAATTGTGATATAAAAACCATCTGCAC
325 TGAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCAC
* * * *
39108 TGTTTTAATTTTTCATGCTTATTTGCTTCAGCTGAATTTTTAGGAGAATTCATGGGTGCTCCAGG
390 GGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGG
*
39173 GAACTTGTGGGA
455 GAATTTGTGGGA
* *
39185 TGCTGTTGATATTTGGATGTCATTTGTGAAATTGTTATTGGAGCTTGATGCGATTAACTGTGTGC
1 TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGC
* * *
39250 TAACTTGTTTTTATACATTACACACAAAATCAAAGCTCGA-AGCTTTTGAAGCTTTTATGTTTTG
66 TAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACA-CTTTTGAAGCTTTTACGTTTTG
* * *
39314 CTTTTGAAACCATTTATGCTGTAGTCGAGCTTTAAAAGTATGAAATGTTG-TTT--T-A------
130 CTTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTT
* * * * * * *
39369 AAA-GGAAATGAATAGTTTTAAACTCGCTGAATCACGGAAACATGATAAGCTGCGTTGGTATTAA
195 AAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAA
* * * *
39433 TTTTTCTCGGTGTTAGGTGCAAGCCATGAAGTATTTTGGAGTTAAAAA-ATCAAAAT
260 TTTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAAT
39489 ACTTATTTTT
Statistics
Matches: 2636, Mismatches: 397, Indels: 104
0.84 0.13 0.03
Matches are distributed among these distances:
452 5 0.00
453 70 0.03
454 251 0.10
455 289 0.11
456 158 0.06
457 99 0.04
458 8 0.00
459 6 0.00
461 2 0.00
463 3 0.00
464 25 0.01
465 306 0.12
466 642 0.24
467 762 0.29
468 10 0.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (466 bp):
TGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTGTGTGC
TAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTACGTTTTGC
TTTGGAAACCATTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGTAAGTTTTTA
AATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATTGGTTTTAAT
TTTTCACGGTGTTAGGTGCAAGTCATGAAGGATTTTGGAGCTAAAAATATCAAAATTTCATTTCT
GAACAATTATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCACG
GTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCCAGGG
AATTTGTGGGA
Found at i:38747 original size:933 final size:930
Alignment explanation
Indices: 35123--39488 Score: 5123
Period size: 933 Copynumber: 4.7 Consensus size: 930
35113 TTTCGTTTCT
* * * *
35123 AAACTCAAAGCTCT-ACACTTTTGAAGGTTTTACGTGTTGGTTTGGAAACCATTTATGCTGTAGT
1 AAACTCAAAGCT-TGACGCTTTTGAA-GTTTTACGTTTTGCTTTGGAAACCATTTCTGCTGTAGT
* *
35187 CGAGCTTTAAAAGTATGAAATGTTGTTTTA-AAAGTTTTTAAATGGAAATAAATAGTTTTAAACT
64 CGAGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACT
** * ** * * *
35251 CAG-TC-GTCACAGACACTTGAAAACCTGCGTTGGTTTTAAATTTTCACGGTGTTAGGTGCAAGT
129 -AGCTCAAACACAGAAAAATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGT
* * *
35314 CATGAAGTATTTTGGAGTTAAAAAAAATCAAATTTTCATTTCTGACCAATTATGGGCATAAAAAC
193 CATGAAGTATTTTGGAGCT-AAAAAAATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAAC
* * *
35379 CATATGCACAATCTCAAATTGTGACATAAAAACCGTTTGCATGGTTTTAATATTTCATGCTTATT
257 CATATGCACAATCTCAAATTGTGATATAAAAACCATTTGCATGGTTTTAATTTTTCATGCTTATT
* * * *
35444 TGCTTCAGCAGTATTTTTAGGAGAATTCATGGGAGCTCCAGGGAATTTGTGGGACGCTGTTGATA
322 TGCTTCAGCTG-CTTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATA
* * *
35509 TTTTGATGTCGTTTGTGAAA-TCGTTATTGGAGCTTGATGTGATTAACTGTGTGCTAACTTG-TC
386 TTTGGATGTCATTTGTGAAATTC-TTATTGGAGCTTGATGCGATTAACTGTGTGCTAACTTGTTC
* * * * *
35572 TTTATACATTATGCATAAACTCAAAGCTCAACGCTTTTAAAGCTTTTATGTTTTTCTTTGGAAAC
450 -TTATACATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAC
* ** * * *
35637 CATTTATGCAGTCTTAAAGCTTTAAAAGTATGAAATGTTGTTTTAACAAGTTTTCAAAATGGAAA
514 CATTTATGCTGTAGTCAAGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTT-TAAATGGAAA
* *
35702 TGAATAGTTTTAAACTCGCTAAAACACAGAAATATGATAACAC-ACATTGGTTTTAATTTTTCAC
578 TGAATAGTTTTAAACTCGCTAAAACACAGAAAAATGATAAC-CTGCATTGGTTTTAATTTTTCAC
* * * * * *
35766 GGTGTTAAGTGTAAGGCATGAAGGATTTTGGAGATGAAAATATCGAAATTTCGTTTCTGAACAGT
642 GGTGTTAAGTGCAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTGAACAAT
*
35831 TATGGGCATAAAAACCATCTGCACAATGTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAA
707 TATGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAA
* * *
35896 TTTTTCATTCATATTTGCTTTAGATGCATTTATAGGAGAATTCATAGGTG---C----------T
772 TTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATAGGTGCTCCAGGGATTTTGT
* ** *
35948 ---A-----TTGATATTTGGATGTCATTTCTGAAATCACTATTGGCGTTTGATGCGATTAACTAT
837 GGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTAT
36005 GTGCTAACTTGTTTTTATACATTACGCAC
902 GTGCTAACTTGTTTTTATACATTACGCAC
* * * * * *
36034 AAACTGAAAGCTTAACGCTTTTGAATCTTTTATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTC
1 AAACTCAAAGCTTGACGCTTTTGAA-GTTTTACGTTTTGCTTTGGAAACCATTTCTGCTGTAGTC
* * * * *
36099 GAGTTTTAAAAGTATAAAATGTTGTTTTAGCAAGTTTGTAAGTGGAAATGAATAGTTTTAAACTC
65 GAGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACTA
* *** * * *
36164 GCTCAAACACA-AAAACATGATAACCTGCTTTGGTTTTAATTTTTCGTTGCGTTAAGTGTAAGTC
130 GCTCAAACACAGAAAA-ATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGTC
* * * * * * *
36228 ATAAAGGATTTTGGAGCTGAAAATAT-GAAAGTTCTATGTCTGAACAATTATGGGCATAAAAACC
194 ATGAAGTATTTTGGAGCTAAAAAAATCAAAATTTC-ATTTCTGAACAATTATGGGCATAAAAACC
* * * *
36292 ATCTGCACAATTTCAAATTGTGATATAAAAACCATTTCCATGGTTTTAGTTTTTCATGCTTATTT
258 ATATGCACAATCTCAAATTGTGATATAAAAACCATTTGCATGGTTTTAATTTTTCATGCTTATTT
* * * *
36357 GCTTTAGATGCATTTTTAGGAGAATTCATTGGTGCTCCAGGTAATTTGTGGGATGCTGTTGATAT
323 GCTTCAGCTGC-TTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATA-
* * * * * * ** *
36422 TTTGGATGCCATTTGCGAAATTTTTGTTGGTGCTTAACACGATTAACTGTGTGCTAACTTGTTTT
386 TTTGGATGTCATTTGTGAAATTCTTATTGGAGCTTGATGCGATTAACTGTGTGCTAACTTGTTCT
* * * *
36487 TACACATTACGCACAAACTCAAAGCTCGACACTTTTGAATCTTTTATGTTTTGCTTTGAAAACCA
451 TATACATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAACCA
* * * * *
36552 TTTCTACTGGAGT-AGAGCTTTAAAAGTATGAGATGTTGTTTTAGCATGTTTTTAAATGGAAATG
516 TTTATGCTGTAGTCA-AGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATG
* * * * *
36616 AATAGTTTTAAACTCTCTCAAACACAGAAAAATGATAACCTGCATTAGTTTTAATTTTTTATGGT
580 AATAGTTTTAAACTCGCTAAAACACAGAAAAATGATAACCTGCATTGGTTTTAATTTTTCACGGT
* *
36681 ATT-AG-GCACATGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTTAACAATT
645 GTTAAGTGCA-A-GTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTGAACAATT
** * * *
36744 ATCAGCATAAAAACCATCTGCCCAATTTCAAATTGTGATATAAAAACCATTTGCATGGTTTTAAC
708 ATGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAAT
* * * ** * * * * * *
36809 TTTTCATACTTATTTGCTTCAGATGAATTTTTAATAGAATTCTTGGGCGCTGCATGGAATTTGTG
773 TTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATAGGTGCTCCAGGGATTTTGTG
* * *
36874 GGATACTGTTGATATTTGGA--TCATTTGTGAAATCGTTATTGGCTC-T--T--GA-T-ACGA--
838 GGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTATG
* * *
36928 TGCTAAGTTCTTTTTATACATTATGCAC
903 TGCTAACTTGTTTTTATACATTACGCAC
* * *
36956 AAACTCATAGCTCGACGCTTTT-AAGCTTTTACGTTTTGGTTTGGAAACCATTTAC-GCTGTAGT
1 AAACTCAAAGCTTGACGCTTTTGAAG-TTTTACGTTTTGCTTTGGAAACCATTT-CTGCTGTAGT
* * * *
37019 CGAGCTTTAAAAGTATGAAATGTTATTTTAGAAAGTTTTTAAATGGAAATGATTA-TTTTAACCT
64 CGAGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACT
* * * * *
37083 CGCTTAATCACA-AAAATATGATAACCTGCGTTGGTTTAAATTTTTCACAATGTTAGGTGCAAGT
129 AGCTCAAACACAGAAAA-ATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGT
* *
37147 CATGAAGTATTTTGGA-CTTAAAAAAAATCAAAATTTCATTTCTGAACATTTATGGGCAAAAAAA
193 CATGAAGTATTTTGGAGC-T-AAAAAAATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAA
*
37211 CCATATGCA-ACATCTCAAATTGTGATATAAAAACAATTTGCATGGTTTTTAATTTTTCATGCTT
256 CCATATGCACA-ATCTCAAATTGTGATATAAAAACCATTTGCATGG-TTTTAATTTTTCATGCTT
* * * *
37275 ATTTGCATT-AGATGCATTTTAAGGAGAATTCATGGGTGCTCCATGGAATTTGTTGGATGCTGTT
319 ATTTGC-TTCAGCTGC-TTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTT
* * * * *
37339 GATATTTGGATGTCATTTTTCAAA-TCGTTATTGGCA-CTTTGATGTGATTAAATGTGTGCTTAC
382 GATATTTGGATGTCATTTGTGAAATTC-TTATTGG-AGC-TTGATGCGATTAACTGTGTGCTAAC
* *
37402 TTGGTT-TTATACATTACGCACAAACTCAAA----G-CGC----AAAAC---TATGTTTTGCTTT
444 TT-GTTCTTATACATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTT
* * * * * *
37454 AGAAACCATTTCTGCTGGAGTCGAGCTTTAAAACTATGAAATGTTGTTTTAGTAAGTTTTTAAAT
508 GGAAACCATTTATGCTGTAGTCAAGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAAT
**
37519 GGAAATGAATAGTTTTAAACTCGCTAAAACACAGAAAAATGATAAGTTGCATTGGTTTTAATTTT
573 GGAAATGAATAGTTTTAAACTCGCTAAAACACAGAAAAATGATAACCTGCATTGGTTTTAATTTT
* * * *
37584 TTACGGTGTTAGGTGCAAGTCATGAAGGATTTTAGAGCTAAAAATATCAAAATTTCATTTCTGAA
638 TCACGGTGTTAAGTGCAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTGAA
* * * *
37649 CAATAATGGGCATAAAAACCATCTGCACAATCTCAAATTGTGATATAAAAACCATTTGCCCAGTT
703 CAATTATGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTT
* *
37714 TTAATTTTTCATGCTTATATGCTTTAGATGCATTTTTAGGACAATTCATAGGTGCTCCAGGGATT
768 TTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATAGGTGCTCCAGGGATT
* * *
37779 TTGTGTGATGCTGTTTATATTTGGATGTTATTTGTGAAATCGTTATTGGCGCTTTGATGCGATTA
833 TTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGC-TTGATGCGATTA
* * *
37844 ACTGTGTGCTAACTCGTTTTCATACATTACGCAC
897 ACTATGTGCTAACTTGTTTTTATACATTACGCAC
* * * * *
37878 AAACTCAAAGCTTGACACTTTTGAAGTTTTACATTTTGCTTTGGAAACCATTTCTACTGGAGTCA
1 AAACTCAAAGCTTGACGCTTTTGAAGTTTTACGTTTTGCTTTGGAAACCATTTCTGCTGTAGTCG
** * * * * *
37943 AGTTTTAATTGTATGAAATGTTATTTTAGTACGTTTTTAATTTGAAATGAATAGTTTTAAACTAG
66 AGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACTAG
* * * ** * * *
38008 CTCAAACACAGACAAATGATTACCTGCATTGGTTTTAATTTTTCATGGTGTTATGTGGAACTCAT
131 CTCAAACACAGAAAAATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGTCAT
* * * * * *
38073 GATGGATTTTCGAGCTAAAAATATCAAAATTTCATTTCGGAACAATTATGGGCATAAAAACCATC
196 GAAGTATTTTGGAGCTAAAAAAATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATA
* *
38138 TGCACGATCTCAAATTGTGATATAAAAACCATTTGCATGGTTTTTAATTTTTCTTGCTTATTTGC
261 TGCACAATCTCAAATTGTGATATAAAAACCATTTGCATGG-TTTTAATTTTTCATGCTTATTTGC
* * * * *
38203 TTCGGCTGCCTTTTAGGACAATTCATAGGTGCTCCAGGGAATTTGTGGGAAGCTGTTGATATTTG
325 TTCAGCTGCTTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTG
* *
38268 GATGTCATTTGTGAAATTCTTATTGGCGCTTTGATGCGATTAACTATGTGCTAACTTGTTCTTAT
390 GATGTCATTTGTGAAATTCTTATTGGAGC-TTGATGCGATTAACTGTGTGCTAACTTGTTCTTAT
* * * * ** *
38333 ACATTACACACAAATTCAAAGCTTGACTCTTTTGAAGCTTTTACATTTTGCATTGGAAACCATTT
454 ACATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAACCATTT
* * * *
38398 ATGCTGTTGTCAAGCTTTAAAAGTATGAAATGTTCTTTTAGTAAGTTTTTAAATGGAAATGAGTA
519 ATGCTGTAGTCAAGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATA
* * ** * * * *
38463 GTTTTAAACTTGCTCAATGATAGAAACATGATAACCTGCATTGGTTTTAATTTCTCACGGTGCTA
584 GTTTTAAACTCGCTAAAACACAGAAAAATGATAACCTGCATTGGTTTTAATTTTTCACGGTGTTA
* * *
38528 AGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATGAAAATTTCGTTTCTGAACAATTATGGGC
649 AGTGCAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTGAACAATTATGGGC
* * * *
38593 ATAAAAACCATTTGCACAATTTCAAATTATGATATAAAAACCGTTGGCACGGTTTTAATTTTTCA
714 ATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAATTTTTCA
* * * *
38658 TGCTTATTTGCTTTGGATGCATTTTTTGGAGAATTCATGGGTGCTCCAGGGATTTTGTGGGATGT
779 TGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATAGGTGCTCCAGGGATTTTGTGGGATGC
* * * * *
38723 TGTTGATATTTGGACGTCATTTGTGAAATCGTTATTGGAGCTTGATTCAATTAACTGTGTGCTAA
844 TGTTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTATGTGCTAA
* **
38788 CTTTTTTTTATATGTTACGCAC
909 CTTGTTTTTATACATTACGCAC
* * * * * * *
38810 AAACTAAAAGCTCGATGCCTTTGAAGCCTTTACGTTTTGTTTTGGAAACCATTTATGCTGTAGTC
1 AAACTCAAAGCTTGACGCTTTTGAAG-TTTTACGTTTTGCTTTGGAAACCATTTCTGCTGTAGTC
* * * *
38875 GAGCTTTATAAGTATGAAATGTTGTTTTAGAAAGTTTTTAATTGGAAATGAATACTTTTAAACTC
65 GAGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACT-
* * * *
38940 A-CTCAAACACAGAAAAATGATAACCCGCGTTGCTTTTAAGTTTTCACAGTATTAGGTGCAAGTC
129 AGCTCAAACACAGAAAAATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGTC
* * * * * *
39004 ATCAAGTATTTT-GAGTTAGAAAAATCAAATTTTAATTTCTGAACAATTATGGGCGTAAAAACCA
194 ATGAAGTATTTTGGAGCTAAAAAAATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCA
*
39068 TATGCACAATCTCAAATTGTGATATAAAAACCATCTGCACT-GTTTTAATTTTTCATGCTTATTT
259 TATGCACAATCTCAAATTGTGATATAAAAACCATTTGCA-TGGTTTTAATTTTTCATGCTTATTT
* *
39132 GCTTCAGCTGAATTTTTAGGAGAATTCATGGGTGCTCCAGGGAACTTGTGGGATGCTGTTGATAT
323 GCTTCAGCTG-CTTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATAT
* *
39197 TTGGATGTCATTTGTGAAATTGTTATTGGAGCTTGATGCGATTAACTGTGTGCTAACTTGTTTTT
387 TTGGATGTCATTTGTGAAATTCTTATTGGAGCTTGATGCGATTAACTGTGTGCTAACTTGTTCTT
* * * *
39262 ATACATTACACACAAAATCAAAGCTCGAAGCTTTTGAAGCTTTTATGTTTTGCTTTTGAAACCAT
452 ATACATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAACCAT
*
39327 TTATGCTGTAGTCGAGCTTTAAAAGTATGAAATGTTGTTTT----A------AAA-GGAAATGAA
517 TTATGCTGTAGTCAAGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAA
* * * * * * * *
39381 TAGTTTTAAACTCGCTGAATCACGGAAACATGATAAGCTGCGTTGGTATTAATTTTTCTCGGTGT
582 TAGTTTTAAACTCGCTAAAACACAGAAAAATGATAACCTGCATTGGTTTTAATTTTTCACGGTGT
* * * * *
39446 TAGGTGCAAGCCATGAAGTATTTTGGAG-TTAAAAAATCAAAAT
647 TAAGTGCAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAAT
39489 ACTTATTTTT
Statistics
Matches: 2918, Mismatches: 449, Indels: 168
0.83 0.13 0.05
Matches are distributed among these distances:
910 314 0.11
911 92 0.03
912 420 0.14
913 206 0.07
914 3 0.00
915 1 0.00
916 1 0.00
917 2 0.00
918 3 0.00
919 14 0.00
920 168 0.06
921 296 0.10
922 401 0.14
923 77 0.03
924 7 0.00
925 3 0.00
926 4 0.00
927 1 0.00
928 2 0.00
930 4 0.00
931 176 0.06
932 220 0.08
933 502 0.17
934 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (930 bp):
AAACTCAAAGCTTGACGCTTTTGAAGTTTTACGTTTTGCTTTGGAAACCATTTCTGCTGTAGTCG
AGTTTTAAAAGTATGAAATGTTGTTTTAGAAAGTTTTTAAATGGAAATGAATAGTTTTAAACTAG
CTCAAACACAGAAAAATGATAACCTGCGTTGGTTTTAATTTTTCACAGTGTTAGGTGCAAGTCAT
GAAGTATTTTGGAGCTAAAAAAATCAAAATTTCATTTCTGAACAATTATGGGCATAAAAACCATA
TGCACAATCTCAAATTGTGATATAAAAACCATTTGCATGGTTTTAATTTTTCATGCTTATTTGCT
TCAGCTGCTTTTTAGGAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGTTGATATTTGG
ATGTCATTTGTGAAATTCTTATTGGAGCTTGATGCGATTAACTGTGTGCTAACTTGTTCTTATAC
ATTACGCACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAACCATTTAT
GCTGTAGTCAAGCTTTAAAAGTATGAAATGTTGTTTTAGCAAGTTTTTAAATGGAAATGAATAGT
TTTAAACTCGCTAAAACACAGAAAAATGATAACCTGCATTGGTTTTAATTTTTCACGGTGTTAAG
TGCAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATTTCATTTCTGAACAATTATGGGCAT
AAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTGCACGGTTTTAATTTTTCATG
CTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATAGGTGCTCCAGGGATTTTGTGGGATGCTG
TTGATATTTGGATGTCATTTGTGAAATCGTTATTGGCGCTTGATGCGATTAACTATGTGCTAACT
TGTTTTTATACATTACGCAC
Found at i:40376 original size:379 final size:377
Alignment explanation
Indices: 39631--40378 Score: 1002
Period size: 378 Copynumber: 2.0 Consensus size: 377
39621 TCAAAACCCG
* * *
39631 ATGTTTTGCATTGAAAGCCATTTCTGTTAGAGTCGAGCTTGAAAAGTATGACATGCTTTTTTAGC
1 ATGTTTTGCATTGAAAGCCATTTCTGCTAGAGTCAAGCTTGAAAAGTATGAAATGCTTTTTTAGC
* * * * **
39696 AAGTTTTTAAATGGAAATGAATCGTGTCAAACTCATTCAACCGCAGAAACATGATAATTTGCGTT
66 AAGTTTTTAAATGGAAATGAATAGTGTCAAACTCACTCAAACACAGAAACATGATAACCTGCGTT
* ** * * *
39761 GGTTTTAATTTTTATTGTGTTAAGTGTAAGTAATGAAAGATTTTGGAGCTGAAAATTTCGAAATT
131 GGTTTTAATTTTCACGGTGTTAAGTATAAGTAATGAAAGATTTTGGAGCTGAAAATATCAAAATT
** * * * * * *
39826 TCGTTTTTGAACAATTATGCGCATAAAAACCATCTGCACAATTTTAAATTTTGATATAGAAACCA
196 TAATTTCTGAACAATTATGCGCAAAAAAACCATCTGCACAATTTCAAATTGTGATACAAAAACCA
* *
39891 TTTGCAAGGTTTAATTTTTCATACTTATTTGCTTTTGATGCATTTTTAGGAGAATTCATTGGTGC
261 TTTGCAAGGTTTAATTTTTCATACTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGC
39956 TCCAGGTAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGAAGCTTTT
326 TCCAGGTAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGAAGCTTTT
* * * * **
40008 ATGTTTTGCTTTGGAAA-CCGTTTCTGCTGGAGTCAAGCTTTAAGGGTATGAAATG-TTGTTTTA
1 ATGTTTTGCATT-GAAAGCCATTTCTGCTAGAGTCAAGCTTGAAAAGTATGAAATGCTT-TTTTA
* * *
40071 G-AGAGTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTG-
64 GCA-AGTTTTTAAATGGAAATGAATAGTGTCAAACTCACTCAAACACAGAAACATGATAACCTGC
* * *
40134 GATTTGTTTTAAATTTTCACGGTGTTAAGTATAAGTCATGAATGATTTTGGAGCTGAAAATATCA
128 G-TTGGTTTT-AATTTTCACGGTGTTAAGTATAAGTAATGAAAGATTTTGGAGCTGAAAATATCA
*
40199 AAATTTAATTTCTGAACAATTATGGGCAAAAAAACCATCTGCACAATTTCAAATTGTGATACAAA
191 AAATTTAATTTCTGAACAATTATGCGCAAAAAAACCATCTGCACAATTTCAAATTGTGATACAAA
* *
40264 AACCATTTGCATGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCAT
256 AACCATTTGCAAGG-TTTAATTTTTCATACTTATTTGCTTTAGATGCATTTTTAGGAGAATTCAT
* * * *
40329 GGGTGGTCCAGAG-AATTTGTGGGATGTTGTTTATATTTGGCTGTCATTTG
320 GGGTGCTCCAG-GTAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTG
40379 TGAAATCGTT
Statistics
Matches: 320, Mismatches: 44, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
376 4 0.01
377 105 0.33
378 119 0.37
379 91 0.28
380 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.39
Consensus pattern (377 bp):
ATGTTTTGCATTGAAAGCCATTTCTGCTAGAGTCAAGCTTGAAAAGTATGAAATGCTTTTTTAGC
AAGTTTTTAAATGGAAATGAATAGTGTCAAACTCACTCAAACACAGAAACATGATAACCTGCGTT
GGTTTTAATTTTCACGGTGTTAAGTATAAGTAATGAAAGATTTTGGAGCTGAAAATATCAAAATT
TAATTTCTGAACAATTATGCGCAAAAAAACCATCTGCACAATTTCAAATTGTGATACAAAAACCA
TTTGCAAGGTTTAATTTTTCATACTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGC
TCCAGGTAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGAAGCTTTT
Found at i:41548 original size:366 final size:363
Alignment explanation
Indices: 40846--41558 Score: 1051
Period size: 366 Copynumber: 2.0 Consensus size: 363
40836 AGCTTTTATG
* *
40846 TTTTGATTTGAAAACCATTTTTTCTGGAGTCGAACTTTAAAAGTATGAAATGTTGTTTTAGGAAG
1 TTTTGATTTGAAAACCATTTTTGCTGGAGTCGAACTTTAAAAGTATGAAATGTTGTTTTAGCAAG
* *
40911 TTTTTAAATGGAAATGAAAATTTTTAAACTTACTCAAACACAAAAATATCTCACCTGCATTGGTA
66 TTTTTAAATGGAAATGAAAAGTTTTAAACTTACTCAAACACAAAAATATAT-ACCTGCATTGGTA
* * *
40976 TTAATTTTTCACGGTGTTAACTGTAAGTCATGAACGATTTTGGAGCTAAAAATATCAAAATTTCG
130 TTAATTTTTCACGGTGTTAACTGTAAGTAATGAACGATTTTGCAGCTAAAAACATCAAAATTTCG
*
41041 TTTCTAAACAATTTTGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATGAAAACCATTT
195 TTTCTAAACAATTTTGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATGAAAAACATTT
* *
41106 GCACGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGCGCTC
260 GCACGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGCAGAATTCATCGGCGCTC
41171 CATGGAATTTGTGGGATGCTATGGATTCAAACCTCGACA
325 CATGGAATTTGTGGGATGCTATGGATTCAAACCTCGACA
* *
41210 TTTTGCTTTGAAAACCATTTTCTGCTGGAGTCGAGCTTTAAAAGTATGAAATGTTGTTTTAGCAA
1 TTTTGATTTGAAAACCATTTT-TGCTGGAGTCGAACTTTAAAAGTATGAAATGTTGTTTTAGCAA
*
41275 GTTTTGT-AATGGAAATGAATAGTTTTAAACTCT-CTCAAACACAGAAACATGATAT-CCTGCAT
65 GTTTT-TAAATGGAAATGAAAAGTTTTAAACT-TACTCAAACACA-AAA-AT-ATATACCTGCAT
* * * * * *
41337 TGGTTTTAATTTTTCACGGTGTTAAGTGTAAGTAATGAAGGATTTTGCAGCTGAAAACATGAAAG
125 TGGTATTAATTTTTCACGGTGTTAACTGTAAGTAATGAACGATTTTGCAGCTAAAAACATCAAAA
* * * *
41402 TTTCGTTTCT-GACCATTTATTGGCATAAAAACCATCTGCCCAATTTCAAATTGTGATAT-AAAA
190 TTTCGTTTCTAAACAATTT-TGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATGAAAA
* *
41465 ACATTTGCACGGTTTTTACTTTTTCATGCTTATTTGCTTTATATGCATTTTTAGCAGAATTCATC
254 ACATTTGCACGG-TTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGCAGAATTCATC
* *
41530 GGTGTTCCA-GGAAATTTGTGGGATGCTAT
318 GGCGCTCCATGG-AATTTGTGGGATGCTAT
41559 TGATATTTGG
Statistics
Matches: 313, Mismatches: 27, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
364 20 0.06
365 100 0.32
366 188 0.60
367 2 0.01
368 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (363 bp):
TTTTGATTTGAAAACCATTTTTGCTGGAGTCGAACTTTAAAAGTATGAAATGTTGTTTTAGCAAG
TTTTTAAATGGAAATGAAAAGTTTTAAACTTACTCAAACACAAAAATATATACCTGCATTGGTAT
TAATTTTTCACGGTGTTAACTGTAAGTAATGAACGATTTTGCAGCTAAAAACATCAAAATTTCGT
TTCTAAACAATTTTGGGCATAAAAACCATCTGCACAATTTCAAATTGTGATATGAAAAACATTTG
CACGGTTTTAATTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGCAGAATTCATCGGCGCTCC
ATGGAATTTGTGGGATGCTATGGATTCAAACCTCGACA
Found at i:43241 original size:465 final size:465
Alignment explanation
Indices: 42322--43482 Score: 1713
Period size: 465 Copynumber: 2.5 Consensus size: 465
42312 TCAAAGCTCG
* * * *
42322 ATGTTTTGCTTTGAAAACCATTTCTGCCGGAGTTGAGCTTTAAA--A-GCAATGTTGTTTTGGCA
1 ATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAGTATGAAATGTTGTTTTAGCA
* *
42384 AGTTTTTAAATAGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACTTGCATTG
66 AGTTTTTAAATGGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTGCATTG
* *
42449 GTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATGAAATTT
131 GTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATT
*
42514 TCGTTTCT-AAACAATTATGGGCATAAAAATCATATGCAAAATTTCAAATTGTGATATAAAAACA
196 TCGTTTCTGAAA-AATTATGGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACA
**
42578 TTTGCGTGGTTTTTACTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATCGGT
260 TTTGCACGGTTTTTACTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATCGGT
* *
42643 GCTCTAGGAAATTTATGGGAAGCTGTTGATATTTGGATGTCATTTGTGAAATCATTATTGGCGTT
325 GCTCTAGGAAATTTATGGGAAGCTGTTGACATTTGGATGTCATTTGTGAAATCATTATTGGCGCT
* * *
42708 TGATGCGATTAACTGTGAGCTAACTTGTTTTTATACATTACACACAAACTCAAAGCTTGACACTT
390 TGATGCGATTAACAGTGAGCTAACTTGTTTTTATACATTACACACAAACTCAAAACTCGACACTT
42773 TTGAAGCGTTT
455 TTGAAGCGTTT
* * * *
42784 ATGTTTTGATTTGAAAACTATTTCTGCTGGAGTCGATCATTAAAGGTATGAAATGTTGTTTTAGC
1 ATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAA-GTATGAAATGTTGTTTTAGC
* * *
42849 AACTTTTTAAATGGAAATGAATAGTTTTAAACTCGCTCAAACACAGAAAAATGATAACCTGCATT
65 AAGTTTTTAAATGGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTGCATT
* *
42914 -GTTTAAATTTTTCACGATGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAAT
130 GGTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAAT
* * * * * *
42978 TTCATTTCTGAATAATTATGAGCATAAAAACCGTATGCACAATTTCAAATTGTGATATAAAAACT
195 TTCGTTTCTGAAAAATTATGGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACA
*
43043 TTTGCACGGTTTTTACTTTTTCATGTTTATTTGCTTTAGATGCATTTTTAGGAGAATTCA-CTGG
260 TTTGCACGGTTTTTACTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATC-GG
* * *
43107 TGCTGTAGGAAATTTGTGGGATGCTGTTGACATTTGGATGTCATTTGTGAAATCATTATTGGCGC
324 TGCTCTAGGAAATTTATGGGAAGCTGTTGACATTTGGATGTCATTTGTGAAATCATTATTGGCGC
** * * * **
43172 TTGATGCGATTAACAGTTTGCTAACTTGTTTTTATATATTACGCACAAAGTCAAAACTCGATGCT
389 TTGATGCGATTAACAGTGAGCTAACTTGTTTTTATACATTACACACAAACTCAAAACTCGACACT
*
43237 TTTGAAGCTTTT
454 TTTGAAGCGTTT
* ** * *
43249 ATATTTTGCTTTGGTAACCATTTCTGCTGGAGTGGAGCTTTAAAAGTATGAAATGTTGTTTTAGT
1 ATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTT-AAAGTATGAAATGTTGTTTTAGC
* * * * *
43314 AAGTTTTTAAATGGAAGTGAATAATTTTAAGCTCACTCAAACATAGAAACATGATAACCTGCTTT
65 AAGTTTTTAAATGGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTGCATT
* * *
43379 GGTTTTAATTTTTCACGGTGGTAACTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAAA
130 GGTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAAT
* * *
43444 TTCGTTTATGAAAAACTATGGGCATAAAAACCATTTGCA
195 TTCGTTTCTGAAAAATTATGGGCATAAAAACCATATGCA
43483 CGGCTTTTAA
Statistics
Matches: 619, Mismatches: 72, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
462 38 0.06
464 1 0.00
465 410 0.66
466 170 0.27
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (465 bp):
ATGTTTTGCTTTGAAAACCATTTCTGCTGGAGTCGAGCTTTAAAGTATGAAATGTTGTTTTAGCA
AGTTTTTAAATGGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTGCATTG
GTTTTAATTTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGCTGAAAATATCAAAATT
TCGTTTCTGAAAAATTATGGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACAT
TTGCACGGTTTTTACTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATCGGTG
CTCTAGGAAATTTATGGGAAGCTGTTGACATTTGGATGTCATTTGTGAAATCATTATTGGCGCTT
GATGCGATTAACAGTGAGCTAACTTGTTTTTATACATTACACACAAACTCAAAACTCGACACTTT
TGAAGCGTTT
Found at i:45524 original size:454 final size:453
Alignment explanation
Indices: 44871--45750 Score: 1226
Period size: 454 Copynumber: 1.9 Consensus size: 453
44861 TTGCTTTAGC
* *
44871 AAGTTTTTAAATGGAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTGCATT
1 AAGTTTTTAAATGGAAATGAATAATTTTAAACTCACTCAAACACAGAAACATGATAACCAGCATT
* ** * * *
44936 TGTTTTTATTTTTCATGGCGTTAAGCGTAAGTCATTAAGGATTTTGGAGCTCAAAATAACAAAAG
66 TGTTTTAATTTTTCACAGCGGTAAGCGTAAGTCATGAAGGATTTCGGAGCTCAAAATAACAAAAG
*
45001 TTCGTTTCTGAACAATTATAGGCGTAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACA
131 TTCGTTTCTGAACAATTATAGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACA
* * *
45066 TTTGCACGGTTTTTACTTTTTCATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATCGGT
196 TTTGCACGGTTTTTAATTTTTCATGCATATTTGCTTTACATGCATTTTTAGGAGAATTCATCGGT
* * * * *
45131 GCTCTAGGAAATTTGTGGGATG-TTGTTGATATTTGGCTATTATTTGTGAAATCGTTATTGGCGC
261 GCTCCAGGAAATTTGTGGGATGCAT-TTGATATTTGGATATCATTTGTGAAATCATTATTGGCGC
* * * * ***
45195 TTGATGCAATTAACAGTTTGCTAACTTGTTTTTATATAATACGCACAAAGTCAAAACTTGACGCT
325 TTGATGCAATTAACAGTGTGCTAACTTGTTTTTATACAATACACACAAACTCAAAACGCAACGCT
* *
45260 TTTGAAGCTTTAATATTTTGCTTTGGTAACCATTTCTGCTGGAGTGGAGCTTTAAAAGTATGAA
390 TATGAAGCTTTAATATTTTGCTTTGGAAACCATTTCTGCTGGAGTGGAGCTTTAAAAGTATGAA
* * *
45324 AAGTTTTTAAATGGAAATGAATAATTTTAAGCTCACTTTAAACATAGAAACATGATAACCAGC-T
1 AAGTTTTTAAATGGAAATGAATAATTTTAAACTCAC-TCAAACACAGAAACATGATAACCAGCAT
* * * * *
45388 TTGGTTTTAATTTTTCACAGTGGTAAGTGTAAGTCATGAAGGATTTCGGAGCTGAAAATATCAAT
65 TT-GTTTTAATTTTTCACAGCGGTAAGCGTAAGTCATGAAGGATTTCGGAGCTCAAAATAACAAA
* * * * *
45453 ATTTCGTTTCTGAACAATTATGGGCATAAAAATCATTTGCACAATTTCAAATTGTGAT-TAAAAA
129 AGTTCGTTTCTGAACAATTATAGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAA
* * *
45517 CCATTTGCACGGTTTTTAATTTTTCATGCATATTTGCTTTACATGCGTTTTTAGGAGAATTCTTG
194 -CATTTGCACGGTTTTTAATTTTTCATGCATATTTGCTTTACATGCATTTTTAGGAGAATTCATC
* *
45582 GGTGCTCCAGGGAATTTGTGGGATGCATTTGATATTTGGATATCATTTTTGAAATCATTATTGGC
258 GGTGCTCCAGGAAATTTGTGGGATGCATTTGATATTTGGATATCATTTGTGAAATCATTATTGGC
** *** * * *
45647 GCTTGATGGGATTAGTTGTGTGCTAACTTGTTTTTATACATTACACACAAACTGAAAGCGCAACG
323 GCTTGATGCAATTAACAGTGTGCTAACTTGTTTTTATACAATACACACAAACTCAAAACGCAACG
*
45712 CTTATGAAGCTTTAATGTTTTGCTTTGGAAACCATTTCT
388 CTTATGAAGCTTTAATATTTTGCTTTGGAAACCATTTCT
45751 ACTGCTTTAA
Statistics
Matches: 370, Mismatches: 53, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
453 43 0.12
454 326 0.88
455 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (453 bp):
AAGTTTTTAAATGGAAATGAATAATTTTAAACTCACTCAAACACAGAAACATGATAACCAGCATT
TGTTTTAATTTTTCACAGCGGTAAGCGTAAGTCATGAAGGATTTCGGAGCTCAAAATAACAAAAG
TTCGTTTCTGAACAATTATAGGCATAAAAACCATATGCAAAATTTCAAATTGTGATATAAAAACA
TTTGCACGGTTTTTAATTTTTCATGCATATTTGCTTTACATGCATTTTTAGGAGAATTCATCGGT
GCTCCAGGAAATTTGTGGGATGCATTTGATATTTGGATATCATTTGTGAAATCATTATTGGCGCT
TGATGCAATTAACAGTGTGCTAACTTGTTTTTATACAATACACACAAACTCAAAACGCAACGCTT
ATGAAGCTTTAATATTTTGCTTTGGAAACCATTTCTGCTGGAGTGGAGCTTTAAAAGTATGAA
Found at i:47941 original size:467 final size:465
Alignment explanation
Indices: 47064--48022 Score: 1447
Period size: 467 Copynumber: 2.1 Consensus size: 465
47054 AAGCTTGACA
* * * * *
47064 TTTTGCTTTGAAAACCATTTTTGCTAGAGTCGATCATTATAAGTATGAAATATTGTTTTAGCAAG
1 TTTTGCTTTGAAAACCATTTCTGCTGGAATCGATCATTAAAAGTATGAAATATTATTTTAGCAAG
** * *
47129 TTTTTAAATGAAAGTGAATAGTTTTAAACTCACTCAAACACAGAAAAATGATAACCTGCATTGTT
66 TTTTTAAATGAAAGCAAATAGTTTTAAACTCACTCAAACACAAAAAAATGATAACCTACATTGTT
* * *
47194 TTAAATTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGGAGTTGAAAATATCAAATTTTCG
131 TTAAATTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGAAGCTGAAAATATCAAAATTTCG
* *
47259 TTTCTGAACAATTAGGGGCATAAGAACCATATGCACAATTTCAAATTGTGATATAAAAACATTTG
196 TTTCTGAACAATTAGGGGCATAAAAACCATATGCACAATTTCAAATTGTGATATAAAAACATTTA
* *
47324 CACGGTTTTTACTTTTTCATGTTTATTTGCTTTAGATGCATTTTTAAGAGAATTCATCGGCGCTC
261 CACGGTTTTTACTTTTTAATGCTTATTTGCTTTAGATGCATTTTTAAGAGAATTCATCGGCGCTC
* * * ***
47389 TAGGAAATTTGTGGGTTGCTGTTGATATTTGGATATCATTTGTGAAATCGTTATTGGTGTTTGAT
326 TAGGAAATTTGTGGGATGCTGTTGATATTTGGATATCATTTGTGAAATCATTACTGGCACTTGAT
*
47454 GCGATTAACTGTGCGCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGA
391 GCGATTAACAGTGCGCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGA
47519 AGCTTTTATG
456 AGCTTTTATG
* * * *
47529 TTTTGCTTTGAAAATCATTTCTGCTGGAATGGATCTTTAAAAGTATGAAATGTTATTTTAGCAAG
1 TTTTGCTTTGAAAACCATTTCTGCTGGAATCGATCATTAAAAGTATGAAATATTATTTTAGCAAG
47594 TTTTTAAATGGAAA-CAAATAGTTTTAAACTCACTCAAACACAAAAAAAAATGATAACCTACATT
66 TTTTTAAAT-GAAAGCAAATAGTTTTAAACTCACTCAAACAC--AAAAAAATGATAACCTACATT
* *
47658 GTTTTAATTTTTCACGGTGTTCAGTGTAAGTCATGAAGGA-TTTGAAGCTGAAAATATCAAAATT
128 GTTTTAAATTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGAAGCTGAAAATATCAAAATT
* * *
47722 TCGTTT-TCGAACAATTATGGGCTTAAAAACCATATGCACAATTTCAAATTGTGATATAGAAACC
193 TCGTTTCT-GAACAATTAGGGGCATAAAAACCATATGCACAATTTCAAATTGTGATATA-AAAAC
* * *
47786 ATTTACATGGTTTTTACTTTTTAATGCTTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGG
256 ATTTACACGGTTTTTACTTTTTAATGCTTATTTGCTTTAGATGCATTTTTAAGAGAATTCATCGG
* *
47851 TGCTCTAGGAAATTTGTGGGATGCTGTTGATATTTGGATGTCATTTGTGAAATCATTACTGGCAC
321 CGCTCTAGGAAATTTGTGGGATGCTGTTGATATTTGGATATCATTTGTGAAATCATTACTGGCAC
** * * * **
47916 TTGATGCGATTAACAGTTTGCTAACTTGTTTTTATACATTATGCACAAAGTCAAAGCTTGATGCT
386 TTGATGCGATTAACAGTGCGCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACT
47981 TTTGAAGCTTTTATG
451 TTTGAAGCTTTTATG
*
47996 TTTTGCCTTGAAAACCATTTCTGCTGG
1 TTTTGCTTTGAAAACCATTTCTGCTGG
48023 TTTAATTTTT
Statistics
Matches: 443, Mismatches: 46, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
465 91 0.21
466 78 0.18
467 274 0.62
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (465 bp):
TTTTGCTTTGAAAACCATTTCTGCTGGAATCGATCATTAAAAGTATGAAATATTATTTTAGCAAG
TTTTTAAATGAAAGCAAATAGTTTTAAACTCACTCAAACACAAAAAAATGATAACCTACATTGTT
TTAAATTTTCACGGTGTTAAGTGTAAGTCATGAAGGATTTTGAAGCTGAAAATATCAAAATTTCG
TTTCTGAACAATTAGGGGCATAAAAACCATATGCACAATTTCAAATTGTGATATAAAAACATTTA
CACGGTTTTTACTTTTTAATGCTTATTTGCTTTAGATGCATTTTTAAGAGAATTCATCGGCGCTC
TAGGAAATTTGTGGGATGCTGTTGATATTTGGATATCATTTGTGAAATCATTACTGGCACTTGAT
GCGATTAACAGTGCGCTAACTTGTTTTTATACATTACGCACAAACTCAAAGCTCGACACTTTTGA
AGCTTTTATG
Found at i:48669 original size:652 final size:651
Alignment explanation
Indices: 47423--48650 Score: 1701
Period size: 652 Copynumber: 1.9 Consensus size: 651
47413 ATATTTGGAT
** * * * *
47423 ATCATTTGTGAAATCGTTATTGGTGTTTGATGCGATTAACTGTGCGCTAACTTGTTTTTATACAT
1 ATCATTTGTGAAATCGTTATTGACGCTTGATGCGATTAACTCTGCGCTAACTTATTCTTATACAT
* * *
47488 TACGCACAAACTCAAAGCTCGACACTTTTGAAGCTTTTATGTTTTGCTTTGAAAATCATTTCTGC
66 TACGAACAAACTCAAAGCTCAACACTTTTGAAGCTTTTATGTTTTGCTTTGAAAATCATTTCTCC
* * * *
47553 TGGAATGGATCTTTAAAAGTATGAAATGTTATTTTAGCAAGTTTTTAAATGGAAACAAATAGTTT
131 AGGAATCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGGAAACAAATAGTTT
*
47618 TAAACTCACTCAAACACAAAAAAAAATGATAACCTACATTGTTTTAATTTTTCACGGTGTTCAGT
196 TAAACTCACTCAAACAC-AAAAAAAATGATAACCTACATTGTTTTAATTTTTCACGGTGTTAAGT
* * **
47683 GTAAGTCATGAAGGATTTGAAGCTGAAAATATCAAAATTTCGTTTTCGAACAATTATGGGCTTAA
260 GTAAGTCATGAAAGATTTGAAGCTGAAAATATCAAAATTTCATTTTCGAACAATTATGGGCAGAA
* * * * * * *
47748 AAACCATATGCACAATTTCAAATTGTGATATAGAAACCATTTACATGGTTTTTACTTTTTAATGC
325 AAACCATATACACAATTTCAAATTGTGATAGAAAAACCATTTACATCGATTTTAATTTTTAATAC
* *
47813 TTATTTGCTTTAGATGCATTTTTAGGAGAATTCATGGGTGCTCTAGGAAATTTGTGGGATGCTGT
390 TTATTTGCTTTAGATGCATTTTTAGAAGAATTCATGGGTGCTCCAGGAAATTTGTGGGATGCTGT
* * *
47878 TGATATTTGGATGTCATTTGTGAAATCATTACTGGCACTTGATGCGATTAACAGTTTGCTAACTT
455 TGATATTTGCATGTCATTTGTGAAATCATTACTGGCACTTGATGCGATTAACACTGTGCTAACTT
* * * * *
47943 GTTTTTATACATTATGCACAAAGTCAAAGCTTGATGCTTTTGAAGCTTTTATGTTTTGCCTTGAA
520 ATTCTTATACATTACGCACAAACTCAAAGCTTGACGCTTTTGAAGCTTTTATGTTTTGCCTTGAA
48008 AACCATTTCTGCTGGTTTAATTTTTCATGCTTATTTGCTTTAGATACACTTTTAAGAGAATTCAT
585 AACCATTTCTGCTGGTTTAATTTTTCATGCTTATTTGCTTTAGATACACTTTTAAGAGAATTCAT
48073 GG
650 GG
* * * * *
48075 ATCATTTTTGAAATTGTTATTGACGCTTGATGTGATTTACTCTGTGCTAACTTATTCTTATACAT
1 ATCATTTGTGAAATCGTTATTGACGCTTGATGCGATTAACTCTGCGCTAACTTATTCTTATACAT
* *
48140 TATGAACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAA-CATTTCTC
66 TACGAACAAACTCAAAGCTCAACACTTTTGAAGCTTTTATGTTTTGCTTT-GAAAATCATTTCTC
* * *
48204 CAGGATTCGAGCTTTAAAAGTATGAAATATTGTTTTAGCAAGTTTTTAAATGGAAATAAATAGTT
130 CAGGAATCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGGAAACAAATAGTT
** * * ** *
48269 TTAAACTTGCTCAAACAC-AAAAACATGATAACTTGTATTGGTTTTAATTTTTTACGGTGTTAAG
195 TTAAACTCACTCAAACACAAAAAAAATGATAACCTACATT-GTTTTAATTTTTCACGGTGTTAAG
* * * * * *
48333 TGTAAGTCATGAAAGATTTTGATGTTGAAAATATGAAAGTTTCA-TTTCTGAACAGTTGTGGGCA
259 TGTAAGTCATGAAAGA-TTTGAAGCTGAAAATATCAAAATTTCATTTTC-GAACAATTATGGGCA
* * * * ** *
48397 GAGAAACCATCTACATAATTTCAAATTGTGATAGAAAAATCATTTGTA-CGATTTTAATTTTTCA
322 GAAAAACCATATACACAATTTCAAATTGTGATAGAAAAACCATTTACATCGATTTTAATTTTTAA
*
48461 TACTTATTTGCTTTAGATGCATTTTTAGAAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGC
387 TACTTATTTGCTTTAGATGCATTTTTAGAAGAATTCATGGGTGCTCCAGGAAATTTGTGGGATGC
* * * * * *
48526 TGTTGATATTTGCTTGTCATTTTTTAAATCGTTATTGGCACTTGATGCGATTAACTCTGTGCTAA
452 TGTTGATATTTGCATGTCATTTGTGAAATCATTACTGGCACTTGATGCGATTAACACTGTGCTAA
* *
48591 CTTATTCTTATACGTTACGCACAAACTCAAAGCTCT-ACGCTTTTGAAGCTTTTTTGTTTT
517 CTTATTCTTATACATTACGCACAAACTCAAAGCT-TGACGCTTTTGAAGCTTTTATGTTTT
48651 TGTTTTGGAA
Statistics
Matches: 497, Mismatches: 74, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
650 17 0.03
651 221 0.44
652 254 0.51
653 5 0.01
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (651 bp):
ATCATTTGTGAAATCGTTATTGACGCTTGATGCGATTAACTCTGCGCTAACTTATTCTTATACAT
TACGAACAAACTCAAAGCTCAACACTTTTGAAGCTTTTATGTTTTGCTTTGAAAATCATTTCTCC
AGGAATCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGGAAACAAATAGTTT
TAAACTCACTCAAACACAAAAAAAATGATAACCTACATTGTTTTAATTTTTCACGGTGTTAAGTG
TAAGTCATGAAAGATTTGAAGCTGAAAATATCAAAATTTCATTTTCGAACAATTATGGGCAGAAA
AACCATATACACAATTTCAAATTGTGATAGAAAAACCATTTACATCGATTTTAATTTTTAATACT
TATTTGCTTTAGATGCATTTTTAGAAGAATTCATGGGTGCTCCAGGAAATTTGTGGGATGCTGTT
GATATTTGCATGTCATTTGTGAAATCATTACTGGCACTTGATGCGATTAACACTGTGCTAACTTA
TTCTTATACATTACGCACAAACTCAAAGCTTGACGCTTTTGAAGCTTTTATGTTTTGCCTTGAAA
ACCATTTCTGCTGGTTTAATTTTTCATGCTTATTTGCTTTAGATACACTTTTAAGAGAATTCATG
G
Found at i:48947 original size:466 final size:464
Alignment explanation
Indices: 48076--49606 Score: 2048
Period size: 466 Copynumber: 3.3 Consensus size: 464
48066 AATTCATGGA
* ** * *
48076 TCATTTTTGAAATTGTTATTGACGCTTGATGTGATTTACTCTGTGCTAACTTATTCTTATACATT
1 TCATTTGTGAAATCATTATTGACGCTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACATT
* * *
48141 ATGA-ACAAACTCAAAGCTCAACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAACATTTCTCC
66 A-CACACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAACATTTCTAC
* * * * *
48205 AGGATTCGAGCTTTAAAAGTATGAAATATTGTTTTAGCAAGTTTTTAAATGGAAATAAATAGTTT
130 TGGAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGAAAATGAATAGTTT
*
48270 TAAACTTGCTCAAACACAAAAACATGATAACTTGTATTGGTTTTAATTTTTTACGGTGTTAAGTG
195 TAAACTTGCTCAAACAC-AAAACATGATAACTTGTATTAGTTTTAATTTTTTACGGTGTTAAGTG
* * * *
48335 TAAGTCATGAAAGATTTT-GATGTTGAAAATATGAAAGTTTCATTTCTGAACAGTTGTGGGCAGA
259 TAAGTCATGAAAGATTTTGGA-G-TGAAAATATCAAAATTTCATTTCTAAACAGTTGTGGGCATA
* * * * *
48399 GAAACCATCTACATAATTTCAAATTGTGATAGAAAAATCATTTGTACGATTTTAATTTTTCATAC
322 AAAACCATCTGCACAATTTCAAATTGTGATAGAAAAACCATTTGCACGATTTTAATTTTTCATAC
* * * *
48464 TTATTTGCTTTAGATGCATTTTTAGAAGAATTCATGGGTGCTCCAGGGAATTTGTGGGATGCTGT
387 TTATTTGCTTTAGATGCATTTTTAGAAGAATTAATGTGTGCTCCAAGAAATTTGTGGGATGCTGT
**
48529 TGATATTTGCTTG
452 TGATATTTGGATG
* * * * * *
48542 TCATTTTTTAAATCGTTATTGGCACTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACGTT
1 TCATTTGTGAAATCATTATTGACGCTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACATT
* * * *
48607 ACGCACAAACTCAAAGCTCTACGCTTTTGAAGCTTTTTTGTTTTTGTTTTGGAAAACATTTCTAC
66 ACACACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATG-TTTTGCTTTGGAAAACATTTCTAC
* * * *
48672 TGAAGTCGAGCTTTAAAAGTACGAAATATTATTTTAGCAAATTTTTAAATGAAAATGAATAATTT
130 TGGAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGAAAATGAATAGTTT
** *
48737 TAAACTCACTCAAACACAAAACATGATAACTTGTATTAGTTGTAATTTTTTACGGTGTTAAGTGT
195 TAAACTTGCTCAAACACAAAACATGATAACTTGTATTAGTTTTAATTTTTTACGGTGTTAAGTGT
*
48802 AAGTCATGAAAGATTTTGGAGCTAAAAATATCAAAATTTCATTTCTAAACAGTTGTGGGCATAAA
260 AAGTCATGAAAGATTTTGGAG-TGAAAATATCAAAATTTCATTTCTAAACAGTTGTGGGCATAAA
* * * * * * *
48867 AACCATCTGCACAATTTCATATTATGATAGGAAAACCATTTGCATGGTTTAAATTTTTCGTAAC-
324 AACCATCTGCACAATTTCAAATTGTGATAGAAAAACCATTTGCACGATTTTAATTTTTCAT-ACT
*
48931 TATTTGCTTTAGATGCATTTTTAGGAGAATTAATGTGTGCTCCAAGAAATTTGTGGGATGCTGTT
388 TATTTGCTTTAGATGCATTTTTAGAAGAATTAATGTGTGCTCCAAGAAATTTGTGGGATGCTGTT
*
48996 TATATTTGGATG
453 GATATTTGGATG
* * * * *
49008 TCATTTGTGAAATCATTTTTGGCGCTTGATGCGATTAACTATGTGCTAACTTGTTTTTATACATT
1 TCATTTGTGAAATCATTATTGACGCTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACATT
* * *
49073 ACACACAAACTCAAAGCTCGACACTTTCGAAGCTTTTATGTTTTGCTTT-GAAAACAATTTCTGC
66 ACACACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAAC-ATTTCTAC
49137 TGGAGT-GAAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGAAAATGAATAGTT
130 TGGAGTCG-AGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGAAAATGAATAGTT
* * * * * * * *
49201 TTAAACTTGCTCAAACATAAAAACATGATAACCTGCATTTGTTTTAATTTTTCACGATGCTAATT
194 TTAAACTTGCTCAAACA-CAAAACATGATAACTTGTATTAGTTTTAATTTTTTACGGTGTTAAGT
* ** * * *
49266 GTAAGTCATGAAAGATTTTGGAGTCGAAAATATCAAAATTTCGTTTCTAAACAACTATGAGAATA
258 GTAAGTCATGAAAGATTTTGGAGT-GAAAATATCAAAATTTCATTTCTAAACAGTTGTGGGCATA
* * * *
49331 AAAACTATCTGCACAATTTCAAATTGTGATATAAAAACCATTTTTCACGATTTTAATTTTTCATG
322 AAAACCATCTGCACAATTTCAAATTGTGATAGAAAAACCA-TTTGCACGATTTTAATTTTTCATA
* * *
49396 CTTATTTGCTTCAGATGCATTTTTA-AGAGAATTAATGTGTGCTCCAAGAAATTTGTGAGATGTT
386 CTTATTTGCTTTAGATGCATTTTTAGA-AGAATTAATGTGTGCTCCAAGAAATTTGTGGGATGCT
*
49460 TTTGATATTTGGATG
450 GTTGATATTTGGATG
* * * ** *
49475 TAATTTGTGAAATCATTATTAACGCTTGATGTGATTAACAGTGTGCTAACTTATTTTTATACATT
1 TCATTTGTGAAATCATTATTGACGCTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACATT
* * *
49540 ACACACAAACTCAAAGCTCGATGCTTTTGAAGCTTTTATGTTTTGCTTTAGAAACCATTTCTACT
66 ACACACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAACATTTCTACT
49605 GG
131 GG
49607 TTTAATTTTT
Statistics
Matches: 933, Mismatches: 120, Indels: 23
0.87 0.11 0.02
Matches are distributed among these distances:
464 7 0.01
465 89 0.10
466 534 0.57
467 298 0.32
468 5 0.01
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (464 bp):
TCATTTGTGAAATCATTATTGACGCTTGATGCGATTAACTCTGTGCTAACTTATTCTTATACATT
ACACACAAACTCAAAGCTCGACGCTTTTGAAGCTTTTATGTTTTGCTTTGGAAAACATTTCTACT
GGAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAGTTTTTAAATGAAAATGAATAGTTTT
AAACTTGCTCAAACACAAAACATGATAACTTGTATTAGTTTTAATTTTTTACGGTGTTAAGTGTA
AGTCATGAAAGATTTTGGAGTGAAAATATCAAAATTTCATTTCTAAACAGTTGTGGGCATAAAAA
CCATCTGCACAATTTCAAATTGTGATAGAAAAACCATTTGCACGATTTTAATTTTTCATACTTAT
TTGCTTTAGATGCATTTTTAGAAGAATTAATGTGTGCTCCAAGAAATTTGTGGGATGCTGTTGAT
ATTTGGATG
Found at i:51194 original size:466 final size:465
Alignment explanation
Indices: 49788--51942 Score: 2354
Period size: 466 Copynumber: 4.6 Consensus size: 465
49778 AAGCTCGACC
* * * * * *
49788 TTTTGCTTTGAAAACCATTTCTGCCGGAGTCAAG-TAATAAAATTATGAAATATTATTTTAGCAA
1 TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCT-TTAAAAGTATGAAATATTATTTTAGCAA
* * *
49852 GTTTTTAAATGAAAATAAATAGTTTTAAACTCGCT-AAACAC-GAAAACGTGATAACCTACATTT
65 GTTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACACAG-AAACATGATAACCTACATTG
* * * ** *
49915 GTTTTAATTTTT-CAGTGTGTTATGTGTAAGTCATTACGGATTTTGGAGTTGAAAATATCAAAAT
129 GTTTTAATTTTTACA--GTGTTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATC-AAAT
* * * *
49979 TTT-ATTTCTAAA-AAGTTACGGGCATAAAAACGATCTGCACAATTTCATATTGCGATATAAAAA
191 TTTCATTTCTAAACAA-TTA-GGACATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAA
* * * ** * *
50042 CCATTTGTAC-AATTTTAATTTTTTATGCGAATTTGCTCTATTATATGCATTTTAAAGAGAATTC
254 CCATTTGCACGATTTTTAATTTTTCATGCTTATTTGCT-T-TT-GATGCATTTTTAAGAGAATTC
** ** * * * *
50106 ATGGGTGCTCCAGGAAATTTGTGAGATGCTATTGATATTTGAATGTTATTTTTGAAATCGTTACT
316 ATAAGTGCTCCAAAAAATTTGTGAGATGCTATTGATATTTGGATGTCATTTGTGAAATCGTTATT
* * * * * *
50171 AGCGCTTGTTGTGATTAAACTATGTGCTAATTTATTTTTATACATTACATACAAACTCAAAGTTC
381 AGCACTTGATATGATT-AACTATGTGCTAACTTATTTTTATACATTACACACAAACTCAAAGCTC
* * * **
50236 AACACTTTTGATTCTTTTATG
445 GACGCTTTTAAAGCTTTTATG
* * * * * * *
50257 TTTTGCTTTGAAAATCGTTTCTACTGGAGTCGAGCTTTAAAAGGATGAAATATTGTTTTAACAAA
1 TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAG
* *
50322 TTTTTAAATGAAAATTAATAGTTTTAAACTCGCTCAAACACA-AAAGCATGATAACCTTCACTT-
66 TTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACACAGAAA-CATGATAACCTACA-TTG
* *
50385 ATTTTAATTTTTACAGTGTTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATCAAAATTT
129 GTTTTAATTTTTACAGTGTTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATCAAATTTT
* * *
50450 CGTTTCTGAACAATTAGGACATAAAAACCATCTCCACAATTTCAAATTGTG--AT---AACCATT
194 CATTTCTAAACAATTAGGACATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATT
* * * * * *
50510 TGCACG-CTTTTAATTTTTCATGATTATTTGCTCTAGAGGCATTTTTAAAAGAATTCATAAGTGC
259 TGCACGATTTTTAATTTTTCATGCTTATTTGCTTTTGATGCATTTTTAAGAGAATTCATAAGTGC
* * * * *
50574 TCTAAAAAATTTGTGAGACGCTGTTGATATTTGGATGTCATTTGTGAAATTGTTATTGGC-CTTG
324 TCCAAAAAATTTGTGAGATGCTATTGATATTTGGATGTCATTTGTGAAATCGTTATTAGCACTTG
* * * * * *
50638 ATGTGATTAAATGTGTTACTAACTTGTTTTTATACATTACACACAAACTCAAAGCTCGATGCTTT
389 ATATGATTAACTATG-TGCTAACTTATTTTTATACATTACACACAAACTCAAAGCTCGACGCTTT
50703 TAAAGCTTTTATG
453 TAAAGCTTTTATG
* * *
50716 TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAACTGTTGTTTTAGCAAG
1 TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAG
* *
50781 TTTTTAAATGAAAATGAATAGTTTTAAACTCACTCAAACACAGAAACATGATAACCTATATTGGT
66 TTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTACATTGGT
* * * *
50846 TTAAATTTTTACGGTGTTAAGTGTAACTCATGAAAGATTTTGCAGCTGAGAATATCAAATTTTCA
131 TTTAATTTTTACAGTGTTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATCAAATTTTCA
* * ** * *
50911 TTTTTAAAAAATTATGGATGTAAAAACTATCTGCACAATTTCAAATTGTGATATAAAAATCATTT
196 TTTCTAAACAATTA-GGACATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTT
* * *
50976 GCACGATTTTTACTTTTTCATGCTTATTTGCTTTTGATGTATTTTTAAGAGAATTCATGAGTGCT
260 GCACGATTTTTAATTTTTCATGCTTATTTGCTTTTGATGCATTTTTAAGAGAATTCATAAGTGCT
* * * * * *
51041 CCAAAAAATTTGTGATATGCTATTAATATTTAGATATCATTTGTGAAATTGTTATT-GACACTTA
325 CCAAAAAATTTGTGAGATGCTATTGATATTTGGATGTCATTTGTGAAATCGTTATTAG-CACTTG
* ** * * * *
51105 ATACGATTAGTTGTGTGCTAACTTGTTTTTATACATTACACACAAATTCAAAGCTCGACGCTTAT
389 ATATGATTAACTATGTGCTAACTTATTTTTATACATTACACACAAACTCAAAGCTCGACGCTTTT
*
51170 GAAG-TTTTAATG
454 AAAGCTTTT-ATG
* * * * *
51182 TTTTACTTTGAAAACCATTTATGCTGAAATCGAGCTTTAAAAGTATGAAATATTATTTTAGTAAG
1 TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAG
* * * *
51247 TTTTAAAATGAAAATGAATAGTTTTACACTCGCTAAAACACAAAGAAA-ATGATCAA-TTACATT
66 TTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACAC--AGAAACATGAT-AACCTACATT
* * ** * *
51310 GATTTTAATTTTTCACAGTGTTTAAGTGTAAGTCACAAAAAATTTTAGAGCTGAAAATATCAAAA
128 GGTTTTAATTTTT-ACAGTG-TTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATC-AAA
* * * * * *
51375 TTTT-GTTTTTAAACAATTATGGGCATAAAATCCATCTGTATAATTTCAAATTGTGAT-TAAAAA
190 TTTTCATTTCTAAACAATTA-GGACATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAA
* *
51438 CCATTTGCACGATTTTTAATTTTTCATACTTATTTGCTTTAT-ATACATTTTTAAGAGAATTCAT
254 CCATTTGCACGATTTTTAATTTTTCATGCTTATTTGCTTT-TGATGCATTTTTAAGAGAATTCAT
** * * * *
51502 AAGTGCTCCAAGGAATTTGTGAGATGCTGTTGCTATTTGGATGTCATTTTTGAAATCCTTATTAG
318 AAGTGCTCCAAAAAATTTGTGAGATGCTATTGATATTTGGATGTCATTTGTGAAATCGTTATTAG
* *
51567 CACTTGATGA-GATTTAACTATTTGCTAACTTATTTTTATATATTACA-A-AAACTCAAAGCTCG
383 CACTTGAT-ATGA-TTAACTATGTGCTAACTTATTTTTATACATTACACACAAACTCAAAGCTCG
*
51629 ACGTTTTTAAAGCTTTTATG
446 ACGCTTTTAAAGCTTTTATG
** * *
51649 TTTTGCTTT-ATAAATAATTTCTACTGAAATCGAGCTTTAAAAGTATGAAATGTTATTTTAGCAA
1 TTTTGCTTTGA-AAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAA
* * *
51713 GTTTTTAAATGAAAATGAATAATTTTAAACTCGCTCAAACACAGAAACATGATAATCTACATTTG
65 GTTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTACATTGG
* * * *
51778 TTTTAATTTTTCACTA-TGTT-AGATGTAAATCATGAAAGATTTTGGAGTTAAAAATATCAAAAT
130 TTTTAATTTTT-AC-AGTGTTAAG-TGTAACTCATGAAAGATTTTGGAGCTGAAAATATCAAATT
* ** * * * *
51841 TTCATTTCTGAACAATTACAAGCATAAAAACCATATGCACAATTTTATATTGTGATATAAAAATC
192 TTCATTTCTAAACAATTAGGA-CATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACC
* * * *
51906 ATTTGTAC-ATTTTTAATTTTTTACGTTTATTTGCTTT
256 ATTTGCACGATTTTTAATTTTTCATGCTTATTTGCTTT
51943 AAAAGTTCTT
Statistics
Matches: 1423, Mismatches: 222, Indels: 86
0.82 0.13 0.05
Matches are distributed among these distances:
458 7 0.00
459 242 0.17
460 106 0.07
461 1 0.00
462 2 0.00
463 32 0.02
464 8 0.01
465 119 0.08
466 290 0.20
467 154 0.11
468 176 0.12
469 243 0.17
470 39 0.03
471 4 0.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (465 bp):
TTTTGCTTTGAAAACCATTTCTACTGAAGTCGAGCTTTAAAAGTATGAAATATTATTTTAGCAAG
TTTTTAAATGAAAATGAATAGTTTTAAACTCGCTCAAACACAGAAACATGATAACCTACATTGGT
TTTAATTTTTACAGTGTTAAGTGTAACTCATGAAAGATTTTGGAGCTGAAAATATCAAATTTTCA
TTTCTAAACAATTAGGACATAAAAACCATCTGCACAATTTCAAATTGTGATATAAAAACCATTTG
CACGATTTTTAATTTTTCATGCTTATTTGCTTTTGATGCATTTTTAAGAGAATTCATAAGTGCTC
CAAAAAATTTGTGAGATGCTATTGATATTTGGATGTCATTTGTGAAATCGTTATTAGCACTTGAT
ATGATTAACTATGTGCTAACTTATTTTTATACATTACACACAAACTCAAAGCTCGACGCTTTTAA
AGCTTTTATG
Found at i:52449 original size:7 final size:7
Alignment explanation
Indices: 52434--52636 Score: 51
Period size: 7 Copynumber: 27.1 Consensus size: 7
52424 TAAAATTTTT
52434 ATAAAAA
1 ATAAAAA
*
52441 ATAACAA
1 ATAAAAA
* *
52448 ATTAACA
1 ATAAAAA
52455 ATAAAAA
1 ATAAAAA
52462 ATAAAATA
1 ATAAAA-A
52470 A-AAAAA
1 ATAAAAA
*
52476 ATATTAAA
1 ATA-AAAA
* *
52484 ACAAAAGG
1 ATAAAA-A
*
52492 A-AAAAG
1 ATAAAAA
52498 ATAAAATA
1 ATAAAA-A
*
52506 AGTACCAAA
1 A-TA-AAAA
*
52515 A-AAGAA
1 ATAAAAA
52521 A-AAAAA
1 ATAAAAA
52527 AT-AAAA
1 ATAAAAA
52533 ATAAACAA
1 ATAAA-AA
*
52541 A-AACACA
1 ATAA-AAA
52548 ATAGAAAA
1 ATA-AAAA
52556 A-AAGAAA
1 ATAA-AAA
* *
52563 GTACGAAA
1 ATA-AAAA
52571 ATGAAAAA
1 AT-AAAAA
*
52579 ATAGTCAAA
1 ATA--AAAA
*
52588 AGAAAAA
1 ATAAAAA
52595 ATTAAAAA
1 A-TAAAAA
52603 ATACAAAA
1 ATA-AAAA
52611 ACTAAAAAA
1 A-T-AAAAA
52620 ATGAAAAA
1 AT-AAAAA
52628 ATAGAAAA
1 ATA-AAAA
52636 A
1 A
52637 AAATTAGTTT
Statistics
Matches: 145, Mismatches: 26, Indels: 49
0.66 0.12 0.22
Matches are distributed among these distances:
6 19 0.13
7 55 0.38
8 51 0.35
9 17 0.12
10 3 0.02
ACGTcount: A:0.74, C:0.06, G:0.07, T:0.13
Consensus pattern (7 bp):
ATAAAAA
Found at i:52579 original size:8 final size:8
Alignment explanation
Indices: 52568--52637 Score: 54
Period size: 8 Copynumber: 8.5 Consensus size: 8
52558 AGAAAGTACG
52568 AAAATGAA
1 AAAATGAA
**
52576 AAAATAGTC
1 AAAAT-GAA
52585 AAAA-GAA
1 AAAATGAA
*
52592 AAAATTAA
1 AAAATGAA
52600 AAAAT-ACA
1 AAAATGA-A
*
52608 AAAACTAAA
1 AAAA-TGAA
52617 AAAATGAA
1 AAAATGAA
52625 AAAATAGAA
1 AAAAT-GAA
52634 AAAA
1 AAAA
52638 AATTAGTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
7 6 0.12
8 25 0.50
9 18 0.36
10 1 0.02
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (8 bp):
AAAATGAA
Found at i:52635 original size:24 final size:22
Alignment explanation
Indices: 52568--52639 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 22
52558 AGAAAGTACG
*
52568 AAAATGAAAAAATAGTCAAAAGAA
1 AAAATGAAAAAATAG--AAAAAAA
* *
52592 AAAATTAAAAAATACAAAAACTAAA
1 AAAATGAAAAAATA-GAAAA--AAA
52617 AAAATGAAAAAATAGAAAAAAA
1 AAAATGAAAAAATAGAAAAAAA
52639 A
1 A
52640 TTAGTTTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
22 4 0.10
23 4 0.10
24 17 0.43
25 15 0.38
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAATGAAAAAATAGAAAAAAA
Found at i:52833 original size:16 final size:17
Alignment explanation
Indices: 52803--52834 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
52793 AAGAAATGCC
52803 AAAAAAAAACTCAAAAA
1 AAAAAAAAACTCAAAAA
52820 AAAAAAAAAC-CAAAA
1 AAAAAAAAACTCAAAA
52835 CCTTAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.84, C:0.12, G:0.00, T:0.03
Consensus pattern (17 bp):
AAAAAAAAACTCAAAAA
Found at i:53539 original size:12 final size:12
Alignment explanation
Indices: 53492--53541 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
53482 TTTGTTAATT
53492 AGATAAAATACA
1 AGATAAAATACA
*
53504 CGAT-AAATA-A
1 AGATAAAATACA
* * *
53514 AAATAAATTTCA
1 AGATAAAATACA
53526 AGATAAAATACA
1 AGATAAAATACA
53538 AGAT
1 AGAT
53542 CTTAATTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
10 3 0.11
11 8 0.29
12 17 0.61
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (12 bp):
AGATAAAATACA
Found at i:56108 original size:349 final size:346
Alignment explanation
Indices: 55400--56075 Score: 838
Period size: 349 Copynumber: 1.9 Consensus size: 346
55390 CAACATATAT
* *
55400 TTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAGCATTCAACCATAATGCAT
1 TTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTCAACCACAATGCAT
* * *
55465 GTCAAAATTAAATTGCAGAAATTGAACCTAGCAAACCACTCTGTCCTGTAACAAACAGAGTGAAA
66 GTCAAAATTAAATTGCACAAATTGAACCCAACAAACCACTCTGTCCTGTAACAAACAGAGTGAAA
* * * *
55530 CCAACAAAATAAAAACCTCCCTAAACACATACCTACACACACAGAGGCACAGAAATTGAATTCAC
131 CCAACAAAACAAAAAACTCCCTAAACACACACCTACACACACACAGGCACAGAAATTGAATTCAC
*
55595 TGCTTGAAGCACACAAAGAGAAAAACAACAGGAAAACTCCCATACACAGCCACATAAATTTTTAA
196 TGCTTGAAGCACACAAAGAGAAAAACAACAGGAAAACTCCCATACACAGCCACACAAATTTTTAA
* *
55660 TCCTTAAATACTTACACACAACCATAGAAATTTAGAATCCTTAATTACCCCTACACTACAAAACA
261 TCCTTAAATACCTA-ACACAACCATACAAATTTAGAATCCTTAATTACCCCTACACTACAAAACA
* * *
55725 AGAAGGAAACTCCCATACACATA
325 ACAAGGAAACACACATACACA-A
**
55748 TTTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTTGACCACAATGCA
1 -TTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTCAACCACAATGCA
* * *
55813 TGTCAAAATTAAGTTTCACAAATTGAACCCAACAAACCAAC-CTGTTCTGTAACAAACAGAGTGA
65 TGTCAAAATTAAATTGCACAAATTGAACCCAACAAACC-ACTCTGTCCTGTAACAAACAGAGTGA
* *
55877 AATCAACAAAACAAAAAACTCCC-AAA-ATACACCTACACACACATCAGGCACAGAAATTGAATT
129 AACCAACAAAACAAAAAACTCCCTAAACACACACCTACACACACA-CAGGCACAGAAATTGAATT
55940 CAGCTAATCATGCAAGCCATTAGCTTAGAGCACACAAAGAGAAAAAC-A-A-G-AAACT-CC-TA
193 ---C--A-C-T----G-C-TT-G---A-AGCACACAAAGAGAAAAACAACAGGAAAACTCCCATA
*
55999 CACAGCCACACAAATTTTTAATCCTTAAAT-CCT-ACAC-A-CATACAACTTTAGAATCCTTAAT
240 CACAGCCACACAAATTTTTAATCCTTAAATACCTAACACAACCATACAAATTTAGAATCCTTAAT
*
56060 TCCCCCTACACTACAA
305 TACCCCTACACTACAA
56076 GTCGTTCTTG
Statistics
Matches: 286, Mismatches: 21, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
347 15 0.05
348 21 0.07
349 135 0.47
350 2 0.01
351 1 0.00
353 1 0.00
354 1 0.00
355 37 0.13
356 1 0.00
357 4 0.01
359 3 0.01
360 32 0.11
361 4 0.01
362 6 0.02
363 1 0.00
364 1 0.00
365 2 0.01
366 19 0.07
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.22
Consensus pattern (346 bp):
TTAGAGTTTCAAAGAATCCAGCAAAAGGAAATAATCTTCCTTTTAAACATTCAACCACAATGCAT
GTCAAAATTAAATTGCACAAATTGAACCCAACAAACCACTCTGTCCTGTAACAAACAGAGTGAAA
CCAACAAAACAAAAAACTCCCTAAACACACACCTACACACACACAGGCACAGAAATTGAATTCAC
TGCTTGAAGCACACAAAGAGAAAAACAACAGGAAAACTCCCATACACAGCCACACAAATTTTTAA
TCCTTAAATACCTAACACAACCATACAAATTTAGAATCCTTAATTACCCCTACACTACAAAACAA
CAAGGAAACACACATACACAA
Found at i:66248 original size:26 final size:26
Alignment explanation
Indices: 66202--66253 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
66192 TGTAAAAAAA
66202 TTTAAAAATAAGAGAAGTTATCTTATT
1 TTTAAAAATAAGAGAAGTTAT-TTATT
*
66229 TTTAAAAATTAATA-AA-TTATTTATT
1 TTTAAAAA-TAAGAGAAGTTATTTATT
66254 AATAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 5 0.22
26 4 0.17
27 10 0.43
28 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (26 bp):
TTTAAAAATAAGAGAAGTTATTTATT
Found at i:66570 original size:24 final size:23
Alignment explanation
Indices: 66542--66605 Score: 58
Period size: 24 Copynumber: 2.6 Consensus size: 23
66532 TGCAATTTAA
*
66542 TTAAATTTTAATTTAGTCAAAT-TT
1 TTAAATTTTAATTT-G-AAAATATT
*
66566 TTAAAATTATAAATTTGAAAATATT
1 TT-AAATT-TTAATTTGAAAATATT
66591 TTAAATGTTTAATTT
1 TTAAAT-TTTAATTT
66606 TTTTTCATAG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
24 16 0.48
25 11 0.33
26 6 0.18
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
TTAAATTTTAATTTGAAAATATT
Found at i:66819 original size:6 final size:6
Alignment explanation
Indices: 66808--66845 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
66798 TACCATTAAA
66808 AATTAT AATTAT AATTAT AATTA- AATTAT AATTAT AAT
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AAT
66846 CAAATAACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:66836 original size:17 final size:17
Alignment explanation
Indices: 66808--66850 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
66798 TACCATTAAA
66808 AATTATAATTATAATTAT
1 AATTA-AATTATAATTAT
66826 AATTAAATTATAATTAT
1 AATTAAATTATAATTAT
*
66843 AATCAAAT
1 AATTAAAT
66851 AACTTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTAAATTATAATTAT
Found at i:68067 original size:444 final size:446
Alignment explanation
Indices: 67238--68340 Score: 2176
Period size: 444 Copynumber: 2.5 Consensus size: 446
67228 AAAAATAATT
67238 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
1 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
67303 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
66 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
67368 ATAAGAGACGAGACTTAGAACAACAAAACTGGGAATTTTTGATAGCCACTCTTGTCAGCTCCATA
131 ATAAGAGACGAGACTTAGAACAACAAAACTGGGAATTTTTGATAGCCACTCTTGTCAGCTCCATA
67433 GCAAAATTTTCCACATTATGTGGTGTTTATAAATGGCAACTAATAAAAGGGGCGAAGTACAACAT
196 GCAAAATTTTCCACATTATGTGGTGTTTATAAATGGCAACTAATAAAAGGGGCGAAGTACAACAT
67498 GCTCCAAAGGCAAAGATTAGCTCTAAAACAGTGTTCTTCCCATGCTGACCAGAAGATTTCATCAG
261 GCTCCAAAGGCAAAGATTAGCTCTAAAACAGTGTTCTTCCCATGCTGACCAGAAGATTTCATCAG
67563 CAGTACCCAAAAATTTTCTATAGCGCCTCAAATTTTGGGGCAAACCTATGGAGCCAGATATCTCT
326 CAGTACCCAAAAATTTTCTATAGCGCCTCAAATTTTGGGGCAAACCTATGGAGCCAGATATCTCT
67628 AAAGATCTCAACCAAATGGTAAGCAAATTAAAAG-A-ATATATATATATATATATA
391 AAAGATCTCAACCAAATGGTAAGCAAATTAAAAGAATATATATATATATATATATA
67682 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
1 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
67747 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
66 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
67812 ATAAGAGACGAGACTTAGAACAACAAAACTGGGAATTTTTGATAGCCACTCTTGTCAGCTCCATA
131 ATAAGAGACGAGACTTAGAACAACAAAACTGGGAATTTTTGATAGCCACTCTTGTCAGCTCCATA
67877 GCAAAATTTTCCACATTATGTGGTGTTTATAAATGGCAACTAATAAAAGGGGCGAAGTACAACAT
196 GCAAAATTTTCCACATTATGTGGTGTTTATAAATGGCAACTAATAAAAGGGGCGAAGTACAACAT
67942 GCTCCAAAGGCAAAGATTAGCTCTAAAACAGTGTTCTTCCCATGCTGACCAGAAGATTTCATCAG
261 GCTCCAAAGGCAAAGATTAGCTCTAAAACAGTGTTCTTCCCATGCTGACCAGAAGATTTCATCAG
68007 CAGTACCCAAAAATTTTCTATAGCGCCTCAAATTTTGGGGCAAACCTATGGAGCCAGATATCTCT
326 CAGTACCCAAAAATTTTCTATAGCGCCTCAAATTTTGGGGCAAACCTATGGAGCCAGATATCTCT
68072 AAAGATCTCAACCAAATGGTAAGCAAATTAAAAGAATATATATATATATATATATA
391 AAAGATCTCAACCAAATGGTAAGCAAATTAAAAGAATATATATATATATATATATA
68128 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
1 TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
68193 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
66 TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
68258 ATAAGAGACGAGACTTAGAACAAC-AAACTGGGAATTTTTTGATAGCCACTCTTGTCAGCTCCAT
131 ATAAGAGACGAGACTTAGAACAACAAAACTGGGAA-TTTTTGATAGCCACTCTTGTCAGCTCCAT
68322 AGCAAAATTTTCCACATTA
195 AGCAAAATTTTCCACATTA
Statistics
Matches: 656, Mismatches: 0, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
444 424 0.65
445 11 0.02
446 221 0.34
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (446 bp):
TTATGTAGCATCTCAATAAGATTTGGTTAACCTTTTTCAACTAATAATAAAATTTTATAATCCAA
TCAAAATCCACTTTTTGTTGCTAATTATCAACCTTTCCTCCATAATAAAATTCAAACAGCAAACC
ATAAGAGACGAGACTTAGAACAACAAAACTGGGAATTTTTGATAGCCACTCTTGTCAGCTCCATA
GCAAAATTTTCCACATTATGTGGTGTTTATAAATGGCAACTAATAAAAGGGGCGAAGTACAACAT
GCTCCAAAGGCAAAGATTAGCTCTAAAACAGTGTTCTTCCCATGCTGACCAGAAGATTTCATCAG
CAGTACCCAAAAATTTTCTATAGCGCCTCAAATTTTGGGGCAAACCTATGGAGCCAGATATCTCT
AAAGATCTCAACCAAATGGTAAGCAAATTAAAAGAATATATATATATATATATATA
Done.