Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168249.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25492
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Found at i:146 original size:26 final size:26
Alignment explanation
Indices: 99--151 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
89 GTTGACTTAG
* *
99 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* * *
125 GCATACGGAGTTGATACGCAGTGTAA
1 GCATACGGAGTTCATACCCAGTCTAA
151 G
1 G
152 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:2669 original size:26 final size:26
Alignment explanation
Indices: 2639--2691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2629 GTTGACTTAG
2639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2665 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2691 G
1 G
2692 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3620 original size:895 final size:893
Alignment explanation
Indices: 1841--5269 Score: 4652
Period size: 895 Copynumber: 3.9 Consensus size: 893
1831 ATCAACTCAA
* * * * *
1841 GCATTTGCTGGTGCTGCATTTTTTTTCGCCGGGGGCACCATCGTCGGGGCATCACCGGAGAACTT
1 GCATGTGCTGGTGC-ACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTT
*
1906 GACTGACGGCATTTGGGTTCTGGCGATT-AGGGGCGGGGGGTGTGCGCACATGATGTACGATTGG
65 GACCGACGGCATTTGGGTTCTGGCGATTGAGGGGCGGGGGGTGTGCGCACATGATGTACGATTGG
* *
1970 TGCTGGAACTTGGCCCATATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCT
130 TGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
2035 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
2100 CTTTTTTCAAATGGTCATAAAATCCTATACACTTCAAGTTTTGAGCTGAATTTTTTTGTGCATGC
260 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
2165 CAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAT-CTTCTGAAAAAATTTTA
325 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTTTA
* * * * * *
2229 AAAAAATCTTGAACCATAAAAAGTTTCAAAGATCATAAAAAATACAAAACAAGTCGTCTTGCCAT
389 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
2294 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGT
454 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * **
2359 ATGGCAGAAATAGGAAGATATGCCT-AACCCACCTACCACCCTATCGATCCACCGG-TTATGCAT
519 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCAT
* * *
2422 CCCGCCTCTCTAGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGCTAGCTTTGGCATAC
583 CCCGCCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * ** * **
2486 AGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT-TCGATAGCAGGATTGGTAGCAC-
647 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGT-GGCAGCAGGATCGACAGCACG
* * * *
2549 CTAGGGGGGGACCTC-ACCGATCCCCGGCTTGGGCATCCTGCCCCTCTGGTCGACTGAGCGCCCG
711 C-A-GGGGGGACC-CGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCGGCTGAGCGCCCG
* * *
2613 TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
773 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
2678 ATTCCTAGTGTAAGATCGGACTGGACCGAGGGTTGCGGGTGCACATGCTAGGCTTGG
838 ATTCCCAGTGTAAGATCGGAC-GAACCGAGGGTTGAGGGTGCACATGCTAGGCTCGG
*
2735 GCATGTGCTGGTGTCACATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTT
1 GCATGTGCTGGTG-CACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTT
* * *
2800 AACCGGCAGCATTTGGGTTCTGGCGATTGAGGGGCGGGGGGGTGTGCGCACATGATGTACGATTG
65 GACCGACGGCATTTGGGTTCTGGCGATTGAGGGGC-GGGGGGTGTGCGCACATGATGTACGATTG
* * *
2865 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCCCT
129 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
2930 TTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTACCCATTAAAGTGTCTGAAATGGGGAG
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
2995 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTT-GCTGAATTTTTTTGTGCGTG
259 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
3059 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGCGACCAAAACTCCTTCTGAAAAAATTTAA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
3124 AAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
389 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
3189 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGACATAAAAATGGCATCGGC
454 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
3254 ATAGCAAAAATATGAAGATGTGCTTAAACCCACCTAACACGCTATCGATCCACGGTTTGCGCATC
519 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
3319 CCGCCTCTCTGGCCGGTGTAGTGCCCGCCCGCACACTCATTTCGTCGGTTGGCTTAGGCATACAG
584 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAG
* * * * *
3384 AGTTCATTCCTAGTTTAAGAT-TGAACTAGACTGAGGGTTGTGGCAGCAGGATCAACAGCACGCA
649 AGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * **
3448 GGGGGGACCCGACCGATCCCCGACTTGTTCATCCTACCCCTCTGGCCGGCTGAGTGCCCGCAAAC
713 GGGGGGACCCGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCGGCTGAGCGCCCGCACGC
* *
3513 TCGTTTCGTGGGTTGACTTAGGCTTACAGAGTTCATTCCCAGTCTAAGCATACGGAATTCATTCC
778 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
3578 CAGTGTATGATTGGATCGAATCGAGGGTTGTGGGTGCACATGCTAGGCTCGG
843 CAGTGTAAGATCGGA-CGAACCGAGGGTTGAGGGTGCACATGCTAGGCTCGG
*
3630 GCATGTGCTGGTGC-CATTTTTTTTTGCCCGGGGCACCA---TC---G--T---CGGAGAACTTG
1 GCATGTGCTGGTGCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTG
*
3683 ACCGACGGCATTTGGGTTCTGGCGATTG-GGGGTGGGGGGTGTGCGCACATGATGTACGATTGGT
66 ACCGACGGCATTTGGGTTCTGGCGATTGAGGGGCGGGGGGTGTGCGCACATGATGTACGATTGGT
*
3747 -CTGGAACTTGGCCCTTATATGGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
131 GCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
3811 AAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCA-TAAAGTGTCTCAAATAGGAACAC
196 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
3875 TTTTTTAAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
261 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
3940 AACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTTGAAAAAATTTTTAA
326 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
*
4005 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTCTTGCCATGA
391 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
4070 AACTTCACGTGAAGGCTTAAAGGG-CCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA
456 AACTTCACATGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
4134 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCGCGGCTTGCGCATCC
520 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
4199 CGCCTCTCTGGCCAGCGTAGTGCCCACCCGTCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
585 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGA
* * * * * * * *
4264 TTTCATTCCTAGTCTAAGATCATACCAAACTGAGGGTTGTGGCAGCAAGATTGACCGCACCCAGG
650 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGG
* * ** ** * * *
4329 GGGGACCCGACCGATCCCTGGCTTGCACATTATGCCCCTTTGGTTGGCTGAGCGCCCGCACGCTC
715 GGGGACCCGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCGGCTGAGCGCCCGCACGCTC
4394 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
780 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
4459 GTGTAAAATCAGAAC-AGACCGAGGGTTAAGGGTGCACATGCTGGGCTCAG
845 GTGTAAGATC-GGACGA-ACCGAGGGTTGAGGGTGCACATGCTAGGCTCGG
* * *** * * *
4509 GCATGTTCTGGTGCCACA-TTCTTTTCGCCCAAAGCACAATCG-CTGGAGCATCGTCGGAGAACC
1 GCATGTGCTGGTG-CACATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACT
* * * * * *
4572 TGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGTGCACATGATGTGCGATGG
64 TGACCGACGGCATTTGGGTTCTGGCGATTGAGGGGCGGGGGGTGTGCGCACATGATGTACGATTG
* * *
4637 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCGC
129 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
4702 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATGGGGAC
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
4767 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTG
259 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * *
4832 CCAACAAAAATATGAGGATCACGTCTACCAAGTTTGGGGGTCAAAACTCCTTCTAAAAAAATTTT
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATTTT
* * ** *
4897 TAAAAAATCTCAAATAGTAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
388 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
** * * *
4962 ACAAAGTTCACATGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTAG
453 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
5027 CATGGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCAG-A
518 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCA
*** * * * * * *
5091 TCCTATCTTTCTGGCTGACGTAGTGCCCGCCCACCCGCTTGTTTCATCGGTTGGCTTAGGCATAC
582 TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * *
5156 GGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACTGAGGGTCATGGTAGTAGGATCGGCAGCATG
647 AGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * *
5220 CAAGGGAGACCCGACCGATCCCCGACTTGTGCATCTTACCCTTCTGGTCG
711 CAGGGGGGACCCGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCG
5270 AAGGTTGTGG
Statistics
Matches: 2230, Mismatches: 267, Indels: 75
0.87 0.10 0.03
Matches are distributed among these distances:
878 59 0.03
879 618 0.28
880 54 0.02
881 6 0.00
882 37 0.02
885 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
890 2 0.00
891 36 0.02
892 32 0.01
893 122 0.05
894 202 0.09
895 731 0.33
896 325 0.15
897 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (893 bp):
GCATGTGCTGGTGCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTG
ACCGACGGCATTTGGGTTCTGGCGATTGAGGGGCGGGGGGTGTGCGCACATGATGTACGATTGGT
GCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGG
GGGACCCGACCGATCCCCGACTTGTGCATCCTACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TGTAAGATCGGACGAACCGAGGGTTGAGGGTGCACATGCTAGGCTCGG
Found at i:6117 original size:26 final size:26
Alignment explanation
Indices: 6081--6133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6071 GCTGACTTAG
6081 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
6107 GCATACGGAGTTCATTCCGAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6133 G
1 G
6134 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:7425 original size:716 final size:723
Alignment explanation
Indices: 6034--7490 Score: 2211
Period size: 716 Copynumber: 2.0 Consensus size: 723
6024 ATCCCTGCCC
* * *
6034 CTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCC
1 CTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGCATACAGAGTTCATTCC
* *
6099 CAGTCTAAGCATACGGAGTTCATTCCGAGTGTAAGATCAAACCAGACCGAGGGTTGCGGGTGCAC
66 CAGTCTAAGCATACGGAGTTCATTCCCAGTGCAAGATCAAACCAGACCGAGGGTTGCGGGTGCAC
* *
6164 ATGCTGCACTCGGGCATGTGCTGGTGTCGCATTTTTTTTCACACGGGGCACCATTGCTGGAGCAT
131 ATGCTGCACTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACACAGGGCACCATTGC--G-G-A-
* *
6229 CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCAGGGGGTGTGCGCACA
191 CG-CGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATT----GGG-AGGGGGTGTGCGCACA
* ** *
6294 TGATGTGCAATTGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAG
250 TGATGCGCAACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
6359 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
315 AAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* **
6424 CTAAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
380 CTAAAATGGGGACACTTTTTTCAAATGATAACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
*
6489 TTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
445 TTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
6554 CGAAAAAGTTTTAAAAAAATCCCGAACCAGAAAAAGTTTTGCAAATTCTGAAAAATATAAAACAA
510 CGAAAAAATTTTAAAAAAATCCCGAACCAGAAAAAGTTTTGCAAAATCTGAAAAATAGAAAACAA
* *
6619 GTCGTGTTGCCTTGAAACTTCACATGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAA
575 GTCGTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
6684 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
640 AAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
6749 CG-GCTTGCGCATCCCGTCT
705 -GAGCTTGCGCATCCCGTCT
* *
6768 CTCTGGCCAGCTGAGCGCCCGCACGCT-AGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
1 CTCTGGCCAGCTGAGCGCCCGCACGCTCA-TTTCATGGGCTGACTTAGGCATACAGAGTTCATTC
* * *
6832 CCAGTCTAAGCATATGGAGTTCATTCCCAGTGCAAGATCAGACCAGA-TGAAGGGTTGCGGGTGC
65 CCAGTCTAAGCATACGGAGTTCATTCCCAGTGCAAGATCAAACCAGACCG-AGGGTTGCGGGTGC
* ** *
6896 ACATGTTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTTCAC-CTAGGGCACCA-T-C-G-C-
129 ACATGCTGCACTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACAC-AGGGCACCATTGCGGACG
*
6955 CGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATT-GG-GGGGTTGTGCGCACATGATGCGC
193 CGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATTGGGAGGGGGTGTGCGCACATGATGCGC
* * * *
7018 GACGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCTCTCATCAAACCTCGAGAAATCGCA
258 AACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACA
*
7083 CCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
323 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
7148 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
388 GGGACACTTTTTTCAAATGATAACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * *
7213 GCATGCCAAAAAAAATACAAA-GATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAA
453 GCATGCCAAAAAAAATA-AAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
7277 ATTTTAAAAAAATCCCGAACCATAAAAAGTTTTG-AAAATCATGAAAAATAGAAAACAAGTTGTC
517 ATTTTAAAAAAATCCCGAACCAGAAAAAGTTTTGCAAAATC-TGAAAAATAGAAAACAAGTCGTC
* * *
7341 TTGCCTTGAAACTTCGCATGAATGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGG
581 TTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
7406 CATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCAGAGCTT
646 CATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAGAGCTT
7471 GCGCATCCCGTCT
711 GCGCATCCCGTCT
*
7484 CTTTGGC
1 CTCTGGC
7491 TGGGTAATGC
Statistics
Matches: 666, Mismatches: 51, Indels: 30
0.89 0.07 0.04
Matches are distributed among these distances:
715 6 0.01
716 451 0.68
717 3 0.00
718 2 0.00
723 36 0.05
725 1 0.00
728 1 0.00
732 1 0.00
733 4 0.01
734 161 0.24
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (723 bp):
CTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGCTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTGCAAGATCAAACCAGACCGAGGGTTGCGGGTGCAC
ATGCTGCACTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACACAGGGCACCATTGCGGACGCGG
AGAACCTGACCGACAGCATTAGGGTTCCGACGATTGGGAGGGGGTGTGCGCACATGATGCGCAAC
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGATAACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAAATCCCGAACCAGAAAAAGTTTTGCAAAATCTGAAAAATAGAAAACAAGTCGTCTTGCC
TTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCAGAGCTTGCGCA
TCCCGTCT
Found at i:9323 original size:26 final size:26
Alignment explanation
Indices: 9286--9338 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9276 GTTGACTTAG
9286 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
9312 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
9338 G
1 G
9339 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:9407 original size:708 final size:707
Alignment explanation
Indices: 8040--9453 Score: 1926
Period size: 708 Copynumber: 2.0 Consensus size: 707
8030 ATGGGGACAA
* * * *
8040 TTTTTTCAAATGGTCACAAAATCCTTTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCC
1 TTTTTTCAAATGGTCACAAAATCATATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCC
** * * **
8105 AAAAAAAATACAAGGATCATGTCTACCAAGTCTAGGGCCAAAAATCCTTCTGAAAATTTTTTAAA
66 AAAAAAAATACAAGGATCACATATACCAAGTCTAGGGCAAAAAATCCTTCTGAAAAAATTTTAAA
* * * * *
8170 AAAATCTCGAATCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
131 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
* * * * * *
8235 AACTTCATATGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCTATAAAAATGAAATTGGCAT
196 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTAGCAC
* * * * **
8300 GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCC
261 AGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
* * * *
8365 GTCTCTCTGGCCGACGTTATGCCCGCCCGGCCGCTCGTTCCATGGGTTGGCTTAGGCATAAGGAG
326 GTCTCTCTGGCCGACGTTATGCCCGCCCGCCCGCTCGTTCCATCGGTTGGATTAGGCATAAGAAG
* ** * * *
8430 TTCATTCCAAGTCTAAAATTGGATCAGAACGAGGGTTGTGACAGCAAGATTAATAGCACACAGGG
391 TTCATTCCAAGTCTAAAACTGGATCAGAACGAGGGTTGCAACAGCAAGATCAACAGCACACAAGG
* * * *
8495 GGGGACCCGGCTGGTCCCCGGGTTGTGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTC
456 GGGGACCCGGCTGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTC
* * * *
8560 ATTTCATTGGTTAACATAGGCATACGGAGTTCATTCGCAGTCAAAGCATATAGAGTTCATTCCCA
521 ATTTCATGGGTTAACATAGGCATACGAAGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCCCA
* ** * *
8625 ATGTAAGATCGGACTGGACTGAGGGTTGCAGGTGCACATGCTGGACTTGGGCATGTGCTGGTGCC
586 ATGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGACTCGGGCATGTGCTGGTGCC
* *
8690 GCATTTTTTTTTCACCCAGGGCACCATCGCTGGAGCATCGTCGGAGAACCTAACCGAC
651 GCATTTTTTTTT-ACCCAGGGCACCATCGCGGGAGCATCGTCAGAGAACCTAACCGAC
*
8748 TTTTTTCAAATGGTCACAAAATCATATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCC
1 TTTTTTCAAATGGTCACAAAATCATATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCC
* * *
8813 AAAAAAAATACAAGGATCACATATACCTAGTGTGGGGCAAAAAATCCTTCTGAAAAAATTTTAAA
66 AAAAAAAATACAAGGATCACATATACCAAGTCTAGGGCAAAAAATCCTTCTGAAAAAATTTTAAA
*
8878 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
131 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
**
8943 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTAGCAC
196 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTAGCAC
*
9008 AGCAAAAATATGAAGATGCGCCTAAACCCACCTACGACCCTATCGATCCACAGCTTGCGCATCCC
261 AGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
*
9073 G-CTTCTCTGGCCGACG-TAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGATTAGGCATACA-
326 GTC-TCTCTGGCCGACGTTA-TGCCCGCCCGCCCGCTCGTTCCATCGGTTGGATTAGGCATA-AG
* * * * ** *
9135 AAGTTCATTCCCAA-TCTAAGACTGGA-CTGGAATGAGGGTTGCAATAGCAAGATCGGCAGCACG
388 AAGTTCATT-CCAAGTCTAAAACTGGATC-AGAACGAGGGTTGCAACAGCAAGATCAACAGCACA
* * * * * *
9198 CAAGGGGGGACCCTG-TCGATCCCTAGCTTGCGCATCCTGCCCCTTTGTC-GGCTGAGCGCTCGC
451 CAAGGGGGGACCCGGCT-GATCCCCAGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGC
* * * * * *
9261 ACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
515 ACGCTCATTTCATGGGTTAACATAGGCATACGAAGTTCATTCCCAGTCAAAGCATACAGAGTTCA
* *
9326 TTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTAGG-CTCGGGCATGTGC
580 TTCCCAATGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCT-GGACTCGGGCATGTGC
* ** *
9390 TGGTGCCGCATTTTTTTTTGCCTGGGGCACTATCGCGGGAGCATCGTCAGAGAACCTAACCGAC
644 TGGTGCCGCATTTTTTTTTACCCAGGGCACCATCGCGGGAGCATCGTCAGAGAACCTAACCGAC
9454 GGCATTAGGG
Statistics
Matches: 613, Mismatches: 86, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
706 39 0.06
707 145 0.24
708 424 0.69
709 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (707 bp):
TTTTTTCAAATGGTCACAAAATCATATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCC
AAAAAAAATACAAGGATCACATATACCAAGTCTAGGGCAAAAAATCCTTCTGAAAAAATTTTAAA
AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAACTAGCAC
AGCAAAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
GTCTCTCTGGCCGACGTTATGCCCGCCCGCCCGCTCGTTCCATCGGTTGGATTAGGCATAAGAAG
TTCATTCCAAGTCTAAAACTGGATCAGAACGAGGGTTGCAACAGCAAGATCAACAGCACACAAGG
GGGGACCCGGCTGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTC
ATTTCATGGGTTAACATAGGCATACGAAGTTCATTCCCAGTCAAAGCATACAGAGTTCATTCCCA
ATGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGACTCGGGCATGTGCTGGTGCC
GCATTTTTTTTTACCCAGGGCACCATCGCGGGAGCATCGTCAGAGAACCTAACCGAC
Found at i:11425 original size:894 final size:889
Alignment explanation
Indices: 8746--11807 Score: 4142
Period size: 894 Copynumber: 3.4 Consensus size: 889
8736 AACCTAACCG
*
8746 ACTTTTTTCAAATGGTCACAAAATCATATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-A
1 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
* * * *
8810 GCCAAAAAAAATACAAGGATCACATATACCTAGTGTGGGG-CAAAAAATCCTTCTGAAAAAATTT
66 -CCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACA-CCTTCTGAAAAAATTT
* * *
8874 TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
129 TAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
8939 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTA
194 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** ** *
9004 GCACAGCAAAAATATGAAGATGCGCCTAAACCCACCTACGACCCTATCGATCCACAGCTTGCGCA
259 GCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
* * * * *
9069 TCCCGCTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGATTAGGCATAC
324 TCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * ** ** *
9134 AAAGTTCATTCCCAATCTAAGA-CTGGACTGGAATGAGGGTTGCAATAGCAAGATCGGCAGCACG
389 GGAGTTCATTCCCAGTCTAAGATC-AGACCAG-ATGAGGGTTGCAGCAGCAGGATCGGCAGCACG
* * ** * * *
9198 CAAGGGGGGACCCTG-TCGATCCCTAGCTTGCGCATCCTGCCCCTTT-GTCGGCTGAGCG-CTCG
452 -AAGGGGGGA-CCAGACCGATCCCCGGCTTGCGCATCCT-ACCCTTTGGCCGGATGAGCGCCT-G
* *
9260 CACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
513 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTC
* * *
9325 ATTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGC
577 ATTCCCAGTGCAAGATCAGATCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGC
* ** * * * * * *
9390 TGGTGCCGCATTTTTTTTTGCCTGGGGCACTATCGCGGGAGCATCGTCAGAGAACCTAACCGACG
642 TGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCCTGAG-GAACCTGACCGACG
* *
9455 GCATT-AGGGTTCCGGCGATTGGGGGGACGGGGGGTGTGCGCACATGATGTGTGATGGTTCTGGT
706 GCATTGA-GGTTCCGGCGATTGGGGGG-C-GGGGGTGTGCGCACATGATGTGCGATGGTGCTGGT
* * * *
9519 ACTTGGCCCTTATATTGGCCCCATATCCCTCATCAGACCTTAAGAACTCACACCCCTTTAAAGAG
768 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* *
9584 CATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
833 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
9641 A-TTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
* *
9705 CCAACAAAAATGCAAGGATCACATCTACCAAGTGTGGGGCC-AAA-A-CTCCTGAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACACCTTCTGAAAAAATTTTA
* * * * *
9767 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTGTTGCCAT
131 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
9832 GAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTTAAAAATGGCATTGGC
196 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** *
9897 ATGGCAGAAATATGAAGATGTATGTAAACCCACCTACCACCCTATCGATCTC-CGGCTTGCGCAT
261 ATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC-CACAGCTTGCGCAT
* *
9961 CCCGCCTCTTTGGCCGGCGTA--G-T-GCCCGCCCGCTCGTTTCGTCCGTTGGCTTAGGCATACG
325 CCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * *
10022 GAGTT-ATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAACAGGATCGGCAATATGCA
390 GAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGAA
* * * * *
10086 GGGGGGACCA-AGCCGATCCCCGGCTTGCGCATTCTACCCTCTGGCCGGTTGAGCACCCGCACGC
454 GGGGGGACCAGA-CCGATCCCCGGCTTGCGCATCCTACCCTTTGGCCGGATGAGCGCCTGCACGC
*
10150 TCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATT-C
518 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGCATACGGAGTTCATTCC
* * * * *
10214 AAGTGCAAGATCGGATCGGACCGAGGGTTGCGGGTGCACAAGCTAGGTTTGGGCATGTGCTGGTG
582 CAGTGCAAGATCAGATCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTG
* * * * *
10279 CCGTATTTTTTTTCACCCGGGGCACCA-CGCCGAAGCATCGCCGAAGAAACTGACTGACGGCATT
647 CCGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATC-CTGAGGAACCTGACCGACGGCATT
* * *
10343 GGGGTTCCGACGATTGGGGGGGCGGGGTGTGTGCGCATATGATGTGCGATAGGTGCTGGTACTTG
711 GAGGTTCCGGCGATT-GGGGGGCGGGG-GTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTG
* *
10408 GCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTT
773 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
10473 GAAATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTGTGAAATGTGGAC
838 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
10525 ACTTTTTTCAAATGGTAACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATA
1 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
* * *
10590 CCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACACCTTCTGAAAAAATTTTA
* * *
10655 AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATGGAAAACGATTCGTCTTGCCAT
131 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
10720 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-GGCAATGGC
196 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
10784 ATGGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATC-AGTCCACAGCTTGCGCAT
261 ATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA-TCCACAGCTTGCGCAT
* * *
10848 CCTGCTTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
325 CCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * *
10913 GAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTGTGGCAGTAGGATCGACAGCACGTA
390 GAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGAA
* * * *
10978 GGGGGGAGCAGACCGATCCCCGGCTTGTGCATCCTACCCTTTTGGCCGAATGAGCGCCTG-GCGC
454 GGGGGGACCAGACCGATCCCCGGCTTGCGCATCCTACCC-TTTGGCCGGATGAGCGCCTGCACGC
* *
11042 TCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCC
518 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTCC
* * * ** *
11107 CAGTGCAAGATTC-GATCGGACCGAGGGTTACAGGTGCACATGCTGGGCTCGTACGTGTGCTGGT
582 CAGTGCAAGA-TCAGATCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGT
*
11171 GCCGTATTTTTTTTCACCCGAGGCACCATCGCCGGAGCATCACTGAGGAACCTGACCGACGGCAT
646 GCCGTATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATC-CTGAGGAACCTGACCGACGGCAT
* * *
11236 TGAGGTTCTGGCGATTGGGGCGGCAGGGGGTGTGCGCACATGATATGCGATGGGTGCTGCTACTT
710 TGAGGTTCCGGCGATTGGGG-GGC-GGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTT
* * *
11301 GGCCCTTATGTTGGCCCCCTATCCGTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATT
772 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* * * * * *
11366 AGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGGAATGGGGAT
837 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
11419 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTGTTTTTGTGCAT
1 ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCAT
* * * * * * *
11484 GCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTGAAAAGATTTT
65 ACCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACACCTTCTGAAAAAATTTT
11549 AAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAGTCAT-AGAAAATAGAAAACGAGTCGTCTTGC
130 AAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA-TCATGA-AAAATAGAAAACGAGTCGTCTTGC
*
11613 CGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
193 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
11678 GGCAT-GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
258 GGCATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* * *
11742 ATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATA
323 ATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
11807 C
388 C
11808 TTTTTTGCCC
Statistics
Matches: 1910, Mismatches: 218, Indels: 77
0.87 0.10 0.03
Matches are distributed among these distances:
882 4 0.00
883 59 0.03
884 214 0.11
885 196 0.10
886 47 0.02
887 119 0.06
888 128 0.07
889 2 0.00
890 1 0.00
891 250 0.13
892 145 0.08
893 100 0.05
894 331 0.17
895 108 0.06
896 195 0.10
897 11 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
ACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATA
CCAACAAAAATACAAGGATCACATCTACCAAGTGTGGGGCCAAAACACCTTCTGAAAAAATTTTA
AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
CCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCAGCAGCAGGATCGGCAGCACGAAGG
GGGGACCAGACCGATCCCCGGCTTGCGCATCCTACCCTTTGGCCGGATGAGCGCCTGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCAGT
GCAAGATCAGATCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGT
ATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCCTGAGGAACCTGACCGACGGCATTGAGGT
TCCGGCGATTGGGGGGCGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
Found at i:12698 original size:17 final size:17
Alignment explanation
Indices: 12676--12711 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
12666 CGGGTGCACA
*
12676 TGCTGGGCTCGGGTATG
1 TGCTGGGCTCGGGCATG
*
12693 TGCTGGGCTTGGGCATG
1 TGCTGGGCTCGGGCATG
12710 TG
1 TG
12712 TTGGTGTCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.17, G:0.47, T:0.31
Consensus pattern (17 bp):
TGCTGGGCTCGGGCATG
Found at i:15947 original size:26 final size:26
Alignment explanation
Indices: 15917--15969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15907 GTTGACTTAG
15917 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGATTTCATTCCCAGTCTAA
* * *
15943 GCATACGGATTTCATTCCTAGTGTAA
1 GCATACAGATTTCATTCCCAGTCTAA
15969 G
1 G
15970 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGATTTCATTCCCAGTCTAA
Found at i:16099 original size:22 final size:22
Alignment explanation
Indices: 16072--16114 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
16062 CATCGTGTGC
**
16072 GCACATGATGTGTGATAGGTGT
1 GCACATGATGTACGATAGGTGT
16094 GCACATGATGTACGATAGGTG
1 GCACATGATGTACGATAGGTG
16115 CTGGTACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.35, T:0.28
Consensus pattern (22 bp):
GCACATGATGTACGATAGGTGT
Found at i:16817 original size:26 final size:26
Alignment explanation
Indices: 16781--16833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16771 GTTGACTTAG
16781 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16807 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16833 G
1 G
16834 ATTGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16882 original size:864 final size:873
Alignment explanation
Indices: 15224--20508 Score: 5944
Period size: 892 Copynumber: 6.0 Consensus size: 873
15214 GATGTGTGAT
* * * *
15224 GGTTGTACGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCTTCTCCTTC
1 GGTTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
15289 ATTAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATCTGACATTTTACAGGTTTGCTGCCAGTA
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * * *
15354 GCCATTAACGTGTCTCAAAT-GGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
130 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
*
15418 TTTTTAGCTGAATTGTTTTATGCATGCCAATAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGG
195 TTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * ** *
15482 CCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTGAA
260 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* *
15547 AAATAGAAAACGAGTCGTCTTG-CATTGAAACTTAACATGAAGGCTTAAGGGACAATTGTATGAA
325 AAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
*
15611 TTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
389 TTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
15676 ACCCTACCGATCCATGGCTTGCGTATCCCGTCTCT-TGGTCGACATACTGCCCGCCCGCCCGCTC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC
* * * * ** * *
15740 GTTTCGTTGGTTGGCTTAGTCATACGAAGTGCATTCCCAATCTAAGATTGGACTGGATCGAGGGC
519 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * * * * * * * *
15805 TGTGACAGCAAGATCGGCAGCACGTAGGGAGGACCCGGTTGATCCCCGGCTTGTGCGTCCTGCCC
584 TGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTGCCC
* * * * *
15870 CTCTGGCCGACTGAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACAGATTTCATTCC
649 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * **
15935 CAGTCTAAGCATACGGATTTCATTCCTAGTGTAAGATCGGACCGGACCAAGGGTTGTAGGTGCAC
714 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CAGACCGAGGGTTGCGGGTGCAC
* ** * * **
16000 ATGTTGGTATCGGGCATGTGCTAGTGCTGCATTTTTTTTTGCCCGGGGCACCATCGCC-GAAGCA
778 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAAGCA
*
16064 TC-GTG-TG-CGCAC-A-TGATGTGTGATA-
843 TCGGTGATGACGCACGATTGATGTGCGATAG
* *
16089 GG-TGT-GCACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
1 GGTTGTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16152 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* ** *
16217 TCATTAAAGTGTCTGAAATAAGGACAATTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
* *
16282 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACAT-TGACCAAGTTTGGGG
196 TTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGG
** * * ** *
16346 CTGAAACTCCTTTTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTTAA
260 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
16411 AAATAGAAAACGAGTTGTCCTGCCATGAAACTTCACATGAAGGCATAAGGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
16476 TTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGATGATGTGCCTAAACCCACTTGCCA
390 TTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16541 CCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGTCGGCGTAATGCCCGCCCGCCCGCTCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG
* * * * * *
16606 TTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA-CCAAGGTT
520 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
* * * ** * *
16670 GCGGCAGCAGGATCAATAGCAAACAGGGGGGACCCGACCGATCCTCGGCTTGGGCATCCTGCCCC
585 GCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTGCCCC
*
16735 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
650 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
** * *
16800 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGATAGGACCGAGGGTTACGGGTGCACA
715 AGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACA-GACCGAGGGTTGCGGGTGCACA
* *
16865 TGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCACTCGGGGCACCATCGCCGGAGCATC
779 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCC-G-G----
* **
16930 ACCTGAGCATCGCCGGAGAACCTGAC-CGACAGCATTGGGGTTCCGACGATTAGGGGGGCGGGGG
838 A----AGCAT---CGGTG-A--TGACGC-AC-G-ATTGATG-T--G-CGA-TA-----------G
* * * *
16994 GGTTGTGCGCACATGATGTGCTATAGGTGCTGCTACTTGACCCTTATATTGG-CCCCTAT-CCTC
1 GGTTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
17057 ATCAAACCTCGAGAACTCACACCCCCTTAAA-AGGCATTTGAGATTTTACAGGCTTGCTGCCAGT
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17121 AGCCATTAAAGTGACTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
129 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * *
17186 GTTTTTACCTGAACTT-TTTTATGCATGCCAAGAAAAATACAAGGATCACATCTACCAAGTTTGG
194 GTTTTTAGCTGAA-TTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
17250 GGCCAAAACTCCTTCTAAAAAAAATTTT-TAAAAATCCCAAACCGTAAAAAATTTCAAAAATCAT
258 GGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
17314 GAAAAATAGAAAACGAGTCGTCTTGCCATGAGACTTCACATGAAGGCTTAAGGGACCATTGTATG
322 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
17379 AATTTACAAGCCATAAAAATGGCATTGGCATGGCAA-AAATATGAAGATGTGCCTAAACCCACCT
387 AATTTACAAGCCATAAAAATGGCATTGGCATGG-AAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * **
17443 ACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCTTG
451 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * * ** *
17508 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCCATTCTAAGATCATACCAAATTGAG
516 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
* * * *
17573 GGTTGCGACAGTAGGATCGACAGCATGCAGGAGGGACCCGATCGATCCCCGGTTTGGGCATCCTG
581 GGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTG
* * * *
17638 CCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
646 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
17703 TCCCAGTCTAAGCGTATGGAGTTCATTCCTAGTGTAAGATCAGACCGGACTGAGGGCTT-CGGGT
711 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CAGACCGAGGG-TTGCGGGT
* ** *
17767 GCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCACTTGGGACACCATC-CTCGG
774 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGC-CGG
* * * * * *
17831 ACCATCACCGGAGA--ACCAGACTAGTGGCATTGGGGTTTCGACGATTGGGGGGGCAGG
838 A--AGCATCGGTGATGA-C-G-C-A--CG-ATT--GATGT-G-CGA-T--------A-G
* * *
17888 GGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTC
1 GGTTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
17953 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
18018 ACCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
130 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
18083 TTTTTAGTTGAATTGTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGG
195 TTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * * ** * * *
18148 CTGAAACTCCTTCTAAAAAAATTTAAAAAAAATCTCGAACTTTAAAAACTTTCAAAAATTATTAA
260 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* **
18213 AAATAGAAAATGAGTCACCTTGCCATGAAACTTCACATGAA-G-----GGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* *
18272 TTACAAGCCATAAAAATGGCATTGGCAAGGAAGAAATATGAAGATGTGCC-ATAACCCACCTGCC
390 TTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTA-AACCCACCTACC
* * **
18336 ACCGTATCGATCCACGGCTTGAGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGGTCGCTC
454 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC
* * * * ** * *
18401 GTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATTGGATCGGACCGAGGGT
519 GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
* * ** * * *
18466 TGCAACAGCAGGATCTG-CAGCATGCAGGGTAGACCTGATCGATCCCCGACTT-GGCATCTTGCC
584 TGCGACAGCAGGATC-GACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTGCC
* ** * * *
18529 CCTCTGGCCGACTGAGCGTACGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC
648 CCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
18594 CCAGTCTAAGCATACGAAGTTCATTTCCAGTGTAAGATCAGACCAGACCGAGGGATGCGGGTGCA
713 CCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CAGACCGAGGGTTGCGGGTGCA
* * * * * **
18659 CATGCT-GGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTCACCTGAGGCACCTTCGTTGG-AGC
777 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAAGC
* * * * *
18722 ATCACCGAAGAACCTGACCGACGGCATTGGGGTTCTGATGATTGGGGGGTAGGGG
842 AT---CG--G----TGA-TGAC-GCA----CGAT-TGATG--T--GCGATA---G
* * * *
18777 GGTTGTGCGCACATGATGTGCGATGGGTGTTAGTACTTGGCCTTTATGTTGGCCCCCTATCCCTC
1 GGTTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
18842 ATCAAACCTCGAAAACTCACACCTCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTA
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * ** *
18907 GCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATGGTCACAAAATCCAATACACTTTGAG
130 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
*
18972 TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
195 TTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
19037 CCAAAAGTCATTCTGAAAAAATATTAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATGAA
260 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
19102 AAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAGACTTAAGGGACCATTTTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* *
19167 TTACATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
390 TTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
19232 CCCTATCGATCCATGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCACCCGTCTGCTCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG
* * * **
19297 TTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGA-CTGAGCAT
520 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGT
* * * ** **
19361 TGCGGCAGTAGGATTGGTAGCACGCAGGGGGGACCCG-TCGATCCCCGGCTTACGCATCCTGCCC
584 TGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTGCCC
* * * * * * * * *
19425 CTTTAGTCAGTTGATCGCTCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCAATCC
649 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
19490 CAGTCTAAGCATACAGAGTTCTTTCCCAGTGTAAGGTCAGACCAGACTGAGGGTTGTGGGTGCAC
714 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CAGACCGAGGGTTGCGGGTGCAC
* *
19555 ATGCTAGGCTCGGGCATGTGCTTGTGCCGCATTTTTTTTTCACCCGAGGCAGCATCACTTAGCAT
778 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCACCCG-GG--G---CAC----CAT
* * * ** * * *
19620 CACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTG-GGGGCG--GG
832 CGCC-G-GAAGC--ATCGGT-G-A-TGACG---C-ACGATTGATGTGCGATAG
* * *
19670 GGGTGTGCGAACATGATGTGCGATGGGTGC-AGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGTTGT-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
19734 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
65 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
19799 GCAATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTCAAG
130 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * * *
19864 TTTTTAGCTAAATTTTTTTATGCAAGCCAACAAAAATAGAGGGATCACGTCTACCAAGTTTGGGG
195 TTTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
19929 CCAAAAGTCATTCTGAAAAAATATTAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCATGAA
260 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
19994 AAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAAT
325 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * *
20059 TTACAAGCCATAAAAATGGCATTGGCAGGGTAGAAATATGAATATGTGCCTAAACCCACCTACCA
390 TTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
20124 CCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
455 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG
* ** * * * *
20189 TTTCGTCAGTTGAATTAGGCATACGAAGTTCATTCTCAGTCTAAGATAAGACCGGATTGATGGTT
520 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
** * * ** * * * *
20254 GCGGTAGCAGGATCGACAGTACGTAAAGGGGAACCG-GCTAATCCCCGGCTTGGACATCCTGCCC
585 GCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATC-GATCCCCGGCTTGGGCATCCTGCCC
* * * * * *
20318 CTCTGGCCGGTTGAGCACCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGGACTTCATTCC
649 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
20383 CAGTCTAAGCATACGAAGTTCATTCCCTGTGTAAGAAT-GGATCAGATCGAGGGCTGCGGGTGCA
714 CAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAG-ATCAGA-CAGACCGAGGGTTGCGGGTGCA
* * *
20447 CATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGGA
777 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCCGGA
20509 CTAGATCGAG
Statistics
Matches: 3773, Mismatches: 505, Indels: 269
0.83 0.11 0.06
Matches are distributed among these distances:
862 127 0.03
863 83 0.02
864 440 0.12
865 78 0.02
867 1 0.00
871 1 0.00
875 5 0.00
878 1 0.00
879 2 0.00
880 2 0.00
881 1 0.00
882 5 0.00
883 3 0.00
884 3 0.00
885 3 0.00
886 3 0.00
887 2 0.00
888 50 0.01
889 463 0.12
890 224 0.06
891 5 0.00
892 549 0.15
893 184 0.05
894 69 0.02
895 357 0.09
896 312 0.08
897 17 0.00
898 5 0.00
899 3 0.00
900 1 0.00
901 1 0.00
902 1 0.00
903 6 0.00
904 5 0.00
905 6 0.00
906 452 0.12
907 253 0.07
908 44 0.01
909 3 0.00
910 2 0.00
912 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GGTTGTCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
TTTTAGCTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG
CGACAGCAGGATCGACAGCACGCAGGGGGGACCCGATCGATCCCCGGCTTGGGCATCCTGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACAGACCGAGGGTTGCGGGTGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAAGCATCG
GTGATGACGCACGATTGATGTGCGATAG
Found at i:16954 original size:19 final size:21
Alignment explanation
Indices: 16915--16954 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
16905 CTCGGGGCAC
16915 CATCGCCGGAGCATCACCTGAG
1 CATCGCCGGAGCA-CACCTGAG
16937 CATCGCCGGAG-A-ACCTGA
1 CATCGCCGGAGCACACCTGA
16955 CCGACAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.25, C:0.35, G:0.28, T:0.12
Consensus pattern (21 bp):
CATCGCCGGAGCACACCTGAG
Found at i:18607 original size:26 final size:26
Alignment explanation
Indices: 18577--18629 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18567 GTTGACTTAG
18577 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
* *
18603 GCATACGAAGTTCATTTCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
18629 G
1 G
18630 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:19508 original size:26 final size:26
Alignment explanation
Indices: 19472--19524 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19462 GTTGACTTAG
*
19472 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
** *
19498 GCATACAGAGTTCTTTCCCAGTGTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
19524 G
1 G
19525 GTCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:23311 original size:26 final size:26
Alignment explanation
Indices: 23275--23327 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
23265 GTTGACTTAG
23275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
23301 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23327 G
1 G
23328 ATTGGAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23442 original size:184 final size:185
Alignment explanation
Indices: 23180--23513 Score: 544
Period size: 184 Copynumber: 1.8 Consensus size: 185
23170 CAGGATCGGT
* * * * *
23180 AGCACGTAGGGGGATACCCGGTCGATCCCCAACTTGTGCATCCTGCCCCTCTGGTTGGCTGAATG
1 AGCACGTAGGGGGATACCCGATCGATCCCCAACTTGTGCATCCTACCCCTCTGGCTGACTGAACG
*
23245 CCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
66 CCCGCAAGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
*
23310 GTTCATTCCTAGTGTAAGATTGGAATGGACTGAGGGTTGCAGCAACAAGTTCAGC
131 GTTCATTCCCAGTGTAAGATTGGAATGGACTGAGGGTTGCAGCAACAAGTTCAGC
* * * *
23365 AGCAGGTAGGGGGA-ACCCGATCGATCCCCGACTTGTGCATCCTACCCGTCTGGCTGACTGAGCG
1 AGCACGTAGGGGGATACCCGATCGATCCCCAACTTGTGCATCCTACCCCTCTGGCTGACTGAACG
* *
23429 CCCGCACGCTCATTTCGTGTATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
66 CCCGCAAGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
23494 GTTCATTCCCAGTGTAAGAT
131 GTTCATTCCCAGTGTAAGAT
23514 CGGACCGGAC
Statistics
Matches: 136, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
184 123 0.90
185 13 0.10
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.26
Consensus pattern (185 bp):
AGCACGTAGGGGGATACCCGATCGATCCCCAACTTGTGCATCCTACCCCTCTGGCTGACTGAACG
CCCGCAAGCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
GTTCATTCCCAGTGTAAGATTGGAATGGACTGAGGGTTGCAGCAACAAGTTCAGC
Found at i:23495 original size:26 final size:26
Alignment explanation
Indices: 23459--23511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23449 ATTGACTTAG
23459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
23485 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23511 G
1 G
23512 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25072 original size:898 final size:895
Alignment explanation
Indices: 23372--25492 Score: 2950
Period size: 898 Copynumber: 2.4 Consensus size: 895
23362 AGCAGCAGGT
* * *
23372 AGGGGGAACCCGATCGATCCCCGACTTGTGCATCCTACCCGTCTGG-CTGACTGAGCGCCCGCAC
1 AGGGGGGACCCG-TCGAT-CCCGACTTGTGCATCCTGCCCCTCTGGTC-GACTGAGCGCCCGCAC
* ** * *
23436 GCTCATTTCGTGTATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
63 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
** * *
23501 CCCAGTGTAAGATCGGACCGGACCAAGGGTTACAAGTGCACATGCTGGGAT-TGAGCATGTGCTG
128 CCCAGTGTAAGATCGGACCGGACCAAGGGTTACGGGTGCACATGCTGGGCTCAG-GCATGTGCTG
* * * * *
23565 GTGCTGCATTTTTTTTTCGCCTGGGCCACCATCGCCGGAGCATCATCGAAGAACCTGACC-AGCG
192 GTGCCGCATTTTTTTTTCGCCCGGG-CACCATCGTCGGAGCATCACCGGAGAACCTGACCGA-CG
* *
23629 GCATTGGGGTTCCAACGATTGGCGGGGC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
255 GCATTGGGGTTTCGACGATTGG-GGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
23693 GTACTTGGCCCTAATATTGGCCCCCTATACCTTATCAAACCTCGAGAACTCACACCCCCTTAAAG
319 GTACTTGGCCCTAATATTGGCCCCCTATACCTCACCAAACCTCAAGAACTCACACCCCCTTAAAG
* ** *
23758 AGCATTTGAGATTTTACAGGTTTGTCGTTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
384 AGCATTTGAGATTTTACAAGTTTGTCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* * *
23823 TTCAAATGGTCACAAAATGCTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAACA
449 TTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAAA
*
23888 AAAATATAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAA
514 AAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAA
* * **
23953 TCCTGAACCGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
579 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* * *
24018 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGGTA
644 TCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * * * *
24083 GAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGAATTGCGCGTCTCACGT
709 GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGAATTACGCATCCCACCT
* * * *
24148 CTCTGGCCGGCGTAGTGCCAACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGTGTTCA
774 CTCTGGCCGACGTAGTACCAACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** ** * * *
24213 TTCCCAGTCTAAGATTTGACC-AGACTGAGGGTTGTGGCAGCCGGATCGGTAGCATGAA
839 TTCCCAGCCTAAGATCGGACCGA-ACTGAGGGTTACGGCAGCAGGATCGGCAGCA-CAA
* *
24271 AGGGGGGACCCAGTCGATCCCTGACTTGTGCATCCTGCCCCTCTGGTCGACAGAGCGCCCGCATG
1 AGGGGGGACCC-GTCGATCCC-GACTTGTGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACG
* * * *
24336 GTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCTTTGCCAGTCTAAGCATACGGAGTTGATTC
64 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
24401 CCAGTGTAAGATCGGACTGGACCAAGGGTTACGGGTGCACATACTGGGCTCAGGCATGTGCTAGT
129 CCAGTGTAAGATCGGACCGGACCAAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT
* * *
24466 GCCGCA-TTTTTTTTCGCCCGAGCACCATCGTCGGGGCATCACCGGAGAACCTGACCGACGGCGT
194 GCCGCATTTTTTTTTCGCCCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCAT
* ** *
24530 TGGGGTTTCGGCGATTGAGGGGGCGGGGGGGGTGTATGCACATGATGTGCCATGGGTGCTGGTAC
259 TGGGGTTTCGACGATTG-GGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
24595 TTGGCCCTTATATTGGCCCCCTATCCCTCACCAGACCTCAAGAACTCACACCCCCTTAAAGAGCA
323 TTGGCCCTAATATTGGCCCCCTATACCTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
24660 TTTGAGATTTTACAAGTTTG-CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
388 TTTGAGATTTTACAAGTTTGTC-GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* *
24724 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
452 AAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAAAAAA
* *
24789 ATACAAGGATCATGTCTACCAAGTTT-ATTGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
517 ATACAAGGATCACGTCTACCAAGTTTGA-GGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATC
24853 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
581 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTC
*
24918 ACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATGAAAATGGCATTGGCATGGCAGA
646 ACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * *
24983 AATATGAAGATGTACCTAAACCCACCTACCACGCTATCGATCTAC-AACTTACGTATCCCGCCTC
711 AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGAA-TTACGCATCCCACCTC
* * *
25047 TTTGGTCGACGTAGTACCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
775 TCTGGCCGACGTAGTACCAACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
25112 TCCTAGCCTAAGATCGGACCGAACTGAGGGTTACGGTAGCAGGATCGGCAGCACAT
840 TCCCAGCCTAAGATCGGACCGAACTGAGGGTTACGGCAGCAGGATCGGCAGCACAA
* * * ** *
25168 AGGGGGAGACCCGACCAGTCCCCAGCTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCAC
1 AGGGGG-GACCCGTCGA-TCCCGA-CTTGTGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCAC
* * *
25233 GCTCG-CTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
63 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * * *
25297 CCCAGTGTATGATCGGACCAGACTGAGGGTCACGGGTGCACATGCTGGGCTCGGGCATGTGTTGG
128 CCCAGTGTAAGATCGGACCGGACCAAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* ** * * * * *
25362 TGTCATATTTTTTTTTCGCTCGGGGCACCATCATCAGAGCATCGCCGGAGAACCTGACCGGCGGC
193 TGCCGCATTTTTTTTTCGC-CCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGC
* *
25427 ATTGGGGTTTCGACGATTGGGGGGGGCGGGGGGGGTGTGCGCACAT-ATGTGTGATGGATGCTGG
257 ATTGGGGTTTCGACGATT--GGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
25491 TA
320 TA
Statistics
Matches: 1074, Mismatches: 130, Indels: 36
0.87 0.10 0.03
Matches are distributed among these distances:
897 181 0.17
898 625 0.58
899 241 0.22
900 26 0.02
901 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
AGGGGGGACCCGTCGATCCCGACTTGTGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTGTAAGATCGGACCGGACCAAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGC
CGCATTTTTTTTTCGCCCGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
GGGTTTCGACGATTGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTAATATTGGCCCCCTATACCTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAAGTTTGTCGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAAATCCCGAA
CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATG
AAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGAATTACGCATCCCACCTCTCTGGC
CGACGTAGTACCAACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
CCTAAGATCGGACCGAACTGAGGGTTACGGCAGCAGGATCGGCAGCACAA
Done.