Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168254.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25306
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34


Found at i:6158 original size:2 final size:2

Alignment explanation


    Indices: 6151--6181  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       6141 TTTTCTATGT

                                                          
       6151 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       6182 TGAAAATATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:13928 original size:100 final size:100

Alignment explanation


    Indices: 13729--13917  Score: 360
    Period size: 100  Copynumber: 1.9  Consensus size: 100

      13719 CGAGAGTTTG

                                   *                                         
      13729 ATGAGATTCAATTTGATTTTATTGTTTAAAAAATTCAAGTAAAAGATTGGAATATATATAGTTGA
          1 ATGAGATTCAATTTGATTTTATTATTTAAAAAATTCAAGTAAAAGATTGGAATATATATAGTTGA

                                               
      13794 CCTCACATTTTCAAATCTCTAACAAAATTTTTTTT
         66 CCTCACATTTTCAAATCTCTAACAAAATTTTTTTT

                                                 *                           
      13829 ATGAGATTCAATTTGATTTTATTATTTAAAAAATTCATGTAAAAGATTGGAATATATATAGTTGA
          1 ATGAGATTCAATTTGATTTTATTATTTAAAAAATTCAAGTAAAAGATTGGAATATATATAGTTGA

                                    
      13894 CCTCACATTTTCAAATCTCTAACA
         66 CCTCACATTTTCAAATCTCTAACA

      13918 TTTTTTTTTT


Statistics
Matches: 87,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 100   87  1.00

ACGTcount: A:0.39, C:0.11, G:0.10, T:0.41


Consensus pattern (100 bp):   
ATGAGATTCAATTTGATTTTATTATTTAAAAAATTCAAGTAAAAGATTGGAATATATATAGTTGA
CCTCACATTTTCAAATCTCTAACAAAATTTTTTTT

Found at i:14870 original size:20 final size:20

Alignment explanation


    Indices: 14847--14886  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 20

      14837 AATCTAAAAT

                  *              
      14847 AAAATTTATATTATTAAATAA
          1 AAAATTAAT-TTATTAAATAA

                               
      14868 AAAATTAATTTATTAAATA
          1 AAAATTAATTTATTAAATA

      14887 TGTAAATATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20   10  0.56
  21    8  0.44

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42


Consensus pattern (20 bp):   
AAAATTAATTTATTAAATAA

Found at i:25035 original size:14 final size:15

Alignment explanation


    Indices: 25001--25043  Score: 52
    Period size: 15  Copynumber: 2.7  Consensus size: 15

      24991 AAAATAAAAA

                              
      25001 TATATATATTTATACAAT
          1 TATATATATTT-T--AAT

                           
      25019 TAT-TATATTTTAAT
          1 TATATATATTTTAAT

                       
      25033 TATATATATTT
          1 TATATATATTT

      25044 ATTTGAGCTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  14    6  0.25
  15    7  0.29
  16    1  0.04
  17    7  0.29
  18    3  0.12

ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58


Consensus pattern (15 bp):   
TATATATATTTTAAT
Done.