Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168255.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 25252
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30


Found at i:15136 original size:14 final size:16

Alignment explanation


    Indices: 15103--15141  Score: 55
    Period size: 14  Copynumber: 2.6  Consensus size: 16

      15093 ATGATACTTC

                         *  
      15103 TCTAAGAAGTAATCAA
          1 TCTAAGAAGTAATAAA

                            
      15119 TCTAAGAAG-AA-AAA
          1 TCTAAGAAGTAATAAA

                     
      15133 TCTAAGAAG
          1 TCTAAGAAG

      15142 CATAGAAAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14   11  0.50
  15    2  0.09
  16    9  0.41

ACGTcount: A:0.54, C:0.10, G:0.15, T:0.21


Consensus pattern (16 bp):   
TCTAAGAAGTAATAAA

Found at i:15169 original size:19 final size:19

Alignment explanation


    Indices: 15126--15169  Score: 63
    Period size: 19  Copynumber: 2.4  Consensus size: 19

      15116 CAATCTAAGA

                              *
      15126 AGAAAAATCTAAGAAGCAT
          1 AGAAAAATCTAAGAAGCAG

                           *   
      15145 AGAAAAATCTAAGAATC-G
          1 AGAAAAATCTAAGAAGCAG

                   
      15163 AGAAAAA
          1 AGAAAAA

      15170 CTCAAACCTC


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  18    7  0.30
  19   16  0.70

ACGTcount: A:0.61, C:0.09, G:0.16, T:0.14


Consensus pattern (19 bp):   
AGAAAAATCTAAGAAGCAG
Done.