Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171922
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
File 1 of 5
Found at i:345 original size:176 final size:176
Alignment explanation
Indices: 122--456 Score: 406
Period size: 176 Copynumber: 1.9 Consensus size: 176
112 GTATGAACAG
* * * * * *
122 AAACAATTGTATTATGATAGAGCAAAGGTTATAACAATTTGAAATAGATAATTGTTCAAATAATC
1 AAACAATTGTATTATGACAAAACAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAACC
*
187 ATAATTATTTGAACTAGA-TCAACAAA-TAAATTTCTTTTTTAAATCTC-TTATTAATTCTTGAA
66 ATAATTATTTGAA-TAGATTCAACAAACT-AATTTATTTTTTAAATCTCTTTATTAATTCTTGAA
*
249 ATATTAATAAATTAGTATTATTTTATTTCAAAAATCTTATTTGTTGAA
129 ATATTAATAAAGTAGTATTATTTTATTTCAAAAATCTTATTTGTTGAA
* ** * * **
297 AAACAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTAAAATAGATAGTTGTTTAAATGGC
1 AAACAATTGTATTATGACAAAAC-AAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAAC
* * ** * *
362 CATGATTATTTGAATTGATTCAGTAAACTGATTTATTTTTTAAATCTCTTGTTTATTAATTTTTG
65 CATAATTATTTGAATAGATTCAACAAACTAATTTATTTTTTAAATCTC---TTTATTAATTCTTG
427 AAATATTAATAAAGTAGTATTATTTTATTT
127 AAATATTAATAAAGTAGTATTATTTTATTT
457 TGGATAAGTT
Statistics
Matches: 132, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
175 22 0.17
176 68 0.52
177 1 0.01
180 41 0.31
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (176 bp):
AAACAATTGTATTATGACAAAACAAAGGTAATAACAATTTAAAATAGATAATTGTTCAAATAACC
ATAATTATTTGAATAGATTCAACAAACTAATTTATTTTTTAAATCTCTTTATTAATTCTTGAAAT
ATTAATAAAGTAGTATTATTTTATTTCAAAAATCTTATTTGTTGAA
Found at i:687 original size:15 final size:14
Alignment explanation
Indices: 639--696 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
629 TTAGTTGAAC
*
639 TATTTAAATATCTTAA
1 TATTAAAATAT-TT-A
* *
655 TATTATAATAATTA
1 TATTAAAATATTTA
669 -ATTAAAATTATTTA
1 TATTAAAA-TATTTA
683 TATTAAAATATTTA
1 TATTAAAATATTTA
697 ATTTATATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 6 0.17
14 12 0.34
15 9 0.26
16 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTAAAATATTTA
Found at i:739 original size:17 final size:16
Alignment explanation
Indices: 695--746 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
685 TTAAAATATT
695 TAAT-TTATATTTAT-
1 TAATATTATATTTATA
709 TAA-ATTATATTTTATA
1 TAATATTATA-TTTATA
725 TAATATTATTATTTATA
1 TAATATTA-TATTTATA
*
742 AAATA
1 TAATA
747 AATTGTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
14 8 0.25
15 5 0.16
16 3 0.09
17 14 0.44
18 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATATTATATTTATA
Found at i:812 original size:18 final size:16
Alignment explanation
Indices: 780--813 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
770 TAATAAACTA
780 TTATAATAGTAATAAT
1 TTATAATAGTAATAAT
796 TTATAAATAGTTAATAAT
1 TTAT-AATAG-TAATAAT
814 ATAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 5 0.31
18 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TTATAATAGTAATAAT
Found at i:981 original size:17 final size:17
Alignment explanation
Indices: 959--1002 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
949 AGTATTAGAT
959 TTAATTAATATATA-ATA
1 TTAATTAATATATATA-A
*
976 TTAATTATTATATATAA
1 TTAATTAATATATATAA
993 TTAA-TAATAT
1 TTAATTAATAT
1003 TACTAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.21
17 18 0.75
18 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAATATATATAA
Found at i:1003 original size:19 final size:19
Alignment explanation
Indices: 966--1004 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
956 GATTTAATTA
*
966 ATATATAATATTAATTATT
1 ATATATAATAATAATTATT
985 ATATATAATTAATAA-TATT
1 ATATATAA-TAATAATTATT
1004 A
1 A
1005 CTAAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATAATAATAATTATT
Found at i:1391 original size:179 final size:181
Alignment explanation
Indices: 1078--1509 Score: 526
Period size: 179 Copynumber: 2.4 Consensus size: 181
1068 TGGTAATTAA
* * * * * * *
1078 TAAAAAATGAATCTGTTTACTAAACAAGTTTAAATAATTATAATTATTTGAACAATTATTTATTG
1 TAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
* ** * **
1143 AAAATCGCTATAACCTTTTGCTTTGTCATAAAATGATTTTTTTTGTTCATACAAGCTTATTTTGA
66 CAAATCGCTATAACCTTTTGCTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGA
1208 ATAAAATAATACAAATTTATTAA-ATTAAGACAATTAATAAGTAAAAAATT
131 ATAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAAATT
* *
1258 T-AAAAATAAATCTGTTTACTGAACAAGTTCAAATCGTTATGACTATTTGAATAATTATTTATTT
1 TAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
* * * * * *
1322 CAAATTGTTATGACTTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACCAGCTTATTCAGA
66 CAAATCGCTATAACCTTTTGCTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGA
** ** ** * *
1387 ATAAAATAATATTAATTTATTAATATTTTGGTAATTTATAAGTAAAAGATT
131 ATAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAAATT
* * * * * *
1438 TAAAAAATAAATATGTTTTCCCAAACAAGTTCAAATAGTCATGACTATTTGAATAATAATCTATT
1 TAAAAAATAAATCTG-TTTACTAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATT
1503 TCAAATC
65 TCAAATC
1510 ATCGTGAGCT
Statistics
Matches: 211, Mismatches: 38, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
179 128 0.61
180 23 0.11
181 12 0.06
182 48 0.23
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
TAAAAAATAAATCTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTT
CAAATCGCTATAACCTTTTGCTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGA
ATAAAATAATACAAATTTATTAATATTAAGACAATTAATAAGTAAAAAATT
Found at i:2077 original size:21 final size:21
Alignment explanation
Indices: 2038--2077 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2028 ATATTGTTAA
*
2038 TTATAATTTATAATATAATAT
1 TTATAATATATAATATAATAT
2059 TTATAATATATTAAT-TAAT
1 TTATAATATA-TAATATAAT
2078 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATATAATATAATAT
Found at i:2221 original size:15 final size:15
Alignment explanation
Indices: 2197--2230 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
2187 TTTAACATTA
2197 AATATCTTATCTTAT
1 AATATCTTATCTTAT
* *
2212 AATATTTTATTTTAT
1 AATATCTTATCTTAT
2227 AATA
1 AATA
2231 AATTTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
AATATCTTATCTTAT
Found at i:2425 original size:23 final size:23
Alignment explanation
Indices: 2391--2472 Score: 62
Period size: 23 Copynumber: 3.6 Consensus size: 23
2381 ATTTAAAATA
*
2391 AATTATTGTATTATTAATATAAT
1 AATTATTATATTATTAATATAAT
* *
2414 AATTATTATATTTTTACTA-AAT
1 AATTATTATATTATTAATATAAT
* *
2436 ATTTGAAT-TATTATTAATTATATAT
1 AATT-ATTATATTATTAA-TATA-AT
*
2461 AATGA-TATATTA
1 AATTATTATATTA
2473 AATATATATA
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
22 13 0.29
23 21 0.47
24 7 0.16
25 4 0.09
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (23 bp):
AATTATTATATTATTAATATAAT
Found at i:2463 original size:10 final size:10
Alignment explanation
Indices: 2441--2525 Score: 56
Period size: 10 Copynumber: 8.6 Consensus size: 10
2431 TAAATATTTG
2441 AATTAT-TATT
1 AATTATATA-T
2451 AATTATATAT
1 AATTATATAT
*
2461 AATGATATATT
1 AATTATATA-T
*
2472 AAATATATAT
1 AATTATATAT
2482 AAATT-TATA-
1 -AATTATATAT
2491 AATTATA-AT
1 AATTATATAT
2500 AATT-TAT-T
1 AATTATATAT
*
2508 ATTTATAATAAT
1 AATTAT-AT-AT
2520 AATTAT
1 AATTAT
2526 TAAAATATTT
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
8 11 0.19
9 7 0.12
10 22 0.37
11 13 0.22
12 6 0.10
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (10 bp):
AATTATATAT
Found at i:2497 original size:17 final size:18
Alignment explanation
Indices: 2455--2519 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 18
2445 ATTATTAATT
* *
2455 ATATATAATGATATATTAA
1 ATATATAATAATTTA-TAA
2474 ATATAT-ATAAATTTATAA
1 ATATATAAT-AATTTATAA
*
2492 AT-TATAATAATTTAT-T
1 ATATATAATAATTTATAA
*
2508 ATTTATAATAAT
1 ATATATAATAAT
2520 AATTATTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 2 0.05
17 19 0.47
18 9 0.22
19 10 0.25
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
ATATATAATAATTTATAA
Found at i:2551 original size:56 final size:57
Alignment explanation
Indices: 2446--2578 Score: 129
Period size: 55 Copynumber: 2.4 Consensus size: 57
2436 ATTTGAATTA
* *
2446 TTATTAATTATATATAATGATATATTAAATATATATAAATTTATAAATTA-TAATAAT
1 TTATTAATTATATATAATAATATATTAAATATATATAAATTAATAAATTAGTAA-AAT
* * *
2503 TTATTATTTATA-ATAATAAT-TATTAAA-ATATTTAAGTATAATATAATTAGTAAAA-
1 TTATTAATTATATATAATAATATATTAAATATATATAAAT-TAATA-AATTAGTAAAAT
2558 TTA--AATTATAT-TAGATAATAT
1 TTATTAATTATATATA-ATAATAT
2579 TTTTATTCAA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
53 8 0.12
54 13 0.20
55 15 0.23
56 14 0.22
57 14 0.22
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (57 bp):
TTATTAATTATATATAATAATATATTAAATATATATAAATTAATAAATTAGTAAAAT
Found at i:2567 original size:25 final size:28
Alignment explanation
Indices: 2510--2576 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
2500 AATTTATTAT
* *
2510 TTATAATAATAATTATTAAAATATTTAA
1 TTATAATAATAATTAGTAAAATATTAAA
*
2538 GTATAAT-ATAATTAGT-AAA-ATTAAA
1 TTATAATAATAATTAGTAAAATATTAAA
*
2563 TTATATTAGATAAT
1 TTATAATA-ATAAT
2577 ATTTTTATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 10 0.31
26 3 0.09
27 13 0.41
28 6 0.19
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (28 bp):
TTATAATAATAATTAGTAAAATATTAAA
Found at i:3145 original size:182 final size:179
Alignment explanation
Indices: 2811--3161 Score: 397
Period size: 182 Copynumber: 1.9 Consensus size: 179
2801 TGTTACAATG
* * * * * * *
2811 ATTTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTGTTTGGTAAACTTATTTTTT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACTGATTTTTT
2876 TAAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATAAATATTATTTTAATCCGAATAAGC
66 TAAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATAAATATTATTTTAATCCGAATAAGC
* * *
2941 TCGTATAGACGGAAACAATTATTTTATGACAAAACAAAAAAGTCATAAGA
131 TC-TATAGACGAAAAAAATTATTATATGACAAAACAAAAAAGTCATAAGA
* * *
2991 ATTTGAAATAAATAATTATTTAGATAGTCATAACGATTTGAATTTGTTCGATAAA-TAGATTTAT
1 ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACT-GA-TT-T
* * *** **
3055 TTTTTAAATCTTTTACTTATTAATTGTCTTAAA-ATTAATAAATTTGTATTATTTT-ATTTGAAG
63 TTTTAAAATCTTTTACTTATTAATTGT-TGAAATATTAATAAATAAATATTATTTTAATCCGAA-
*
3118 TAAGCT-TATATGAAC-AAATAAAATTATTATATGACAAACCAAAA
126 TAAGCTCTATA-G-ACGAAA-AAAATTATTATATGACAAAACAAAA
3162 GGTTATAGTG
Statistics
Matches: 142, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
179 1 0.01
180 51 0.36
181 10 0.07
182 76 0.54
183 4 0.03
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (179 bp):
ATTTGAAATAAATAATTATTCAAATAGTCATAACGATTTGAACTTGTTCGATAAACTGATTTTTT
TAAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATAAATATTATTTTAATCCGAATAAGC
TCTATAGACGAAAAAAATTATTATATGACAAAACAAAAAAGTCATAAGA
Found at i:3432 original size:12 final size:12
Alignment explanation
Indices: 3398--3440 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
3388 AATCTCAAAA
*
3398 TATTTTAATTAT
1 TATTTTAATAAT
3410 TGATTTTAATAAT
1 T-ATTTTAATAAT
*
3423 TATTTAAATAAT
1 TATTTTAATAAT
3435 TATTTT
1 TATTTT
3441 CTGATAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 16 0.59
13 11 0.41
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (12 bp):
TATTTTAATAAT
Found at i:4347 original size:12 final size:12
Alignment explanation
Indices: 4313--4347 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
4303 AATAATATTA
*
4313 TTAATTAGTAGT
1 TTAATTAATAGT
4325 TTAATTAAATAGT
1 TTAATT-AATAGT
4338 TTAATTAATA
1 TTAATTAATA
4348 TTCTAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:4687 original size:13 final size:13
Alignment explanation
Indices: 4665--4720 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
4655 CTTAGATTTA
*
4665 ATTATTTTATAAT
1 ATTATATTATAAT
4678 ATTATATTATAAT
1 ATTATATTATAAT
* *
4691 AATATATT-TATT
1 ATTATATTATAAT
4703 ATTATA--ATAATT
1 ATTATATTATAA-T
4715 ATTATA
1 ATTATA
4721 AATTATAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 2 0.06
12 15 0.42
13 19 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTATATTATAAT
Found at i:4702 original size:22 final size:19
Alignment explanation
Indices: 4680--4729 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
4670 TTTATAATAT
4680 TATATTATAATAATATATT-
1 TATATTATAATAAT-TATTA
4699 TATTATTATAATAATTATTA
1 TA-TATTATAATAATTATTA
*
4719 TAAATTATAAT
1 TATATTATAAT
4730 TTGAAATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TATATTATAATAATTATTA
Found at i:4718 original size:15 final size:15
Alignment explanation
Indices: 4663--4719 Score: 62
Period size: 17 Copynumber: 3.7 Consensus size: 15
4653 CCCTTAGATT
4663 TAATTATT-TTATAA
1 TAATTATTATTATAA
* *
4677 TATTATATTATAATAA
1 TAAT-TATTATTATAA
4693 TATATTTATTATTATAA
1 TA-A-TTATTATTATAA
4710 TAATTATTAT
1 TAATTATTAT
4720 AAATTATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
14 3 0.09
15 11 0.31
16 8 0.23
17 12 0.34
18 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTATTATTATAA
Found at i:5219 original size:34 final size:34
Alignment explanation
Indices: 5180--5248 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
5170 ATTTTTATAA
5180 TTATTAAAATAAATA-AATAACTAATAAAAGTTAT
1 TTATTAAAATAAATATAATAA-TAATAAAAGTTAT
* * *
5214 TTATTATAATAAATATATTAATAATAATAGTTAT
1 TTATTAAAATAAATATAATAATAATAAAAGTTAT
5248 T
1 T
5249 AAATGTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 27 0.87
35 4 0.13
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (34 bp):
TTATTAAAATAAATATAATAATAATAAAAGTTAT
Found at i:5557 original size:17 final size:17
Alignment explanation
Indices: 5526--5597 Score: 67
Period size: 17 Copynumber: 4.1 Consensus size: 17
5516 AATATGATAA
5526 AACTAAT-TTATTAATAT
1 AACTAATATTA-TAATAT
*
5543 AACTTATATTATAATAT
1 AACTAATATTATAATAT
* *
5560 AAATAATATATACAAGTAT
1 AACTAATAT-TATAA-TAT
5579 AA-TAATATTACTAATAT
1 AACTAATATTA-TAATAT
5596 AA
1 AA
5598 GACTTATATT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
17 26 0.57
18 15 0.33
19 5 0.11
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (17 bp):
AACTAATATTATAATAT
Found at i:5641 original size:15 final size:14
Alignment explanation
Indices: 5603--5703 Score: 50
Period size: 15 Copynumber: 7.2 Consensus size: 14
5593 TATAAGACTT
5603 ATATTAATAATTCATA
1 ATATT-ATAATT-ATA
*
5619 TTATTATAATTATA
1 ATATTATAATTATA
* *
5633 ATATGTATAGTTATT
1 ATAT-TATAATTATA
* **
5648 ATA-CATACCTATA
1 ATATTATAATTATA
* *
5661 ATAGTCT-ATT-T-
1 ATATTATAATTATA
5672 ATATTATAATTATA
1 ATATTATAATTATA
5686 A-ATATATAAATTATA
1 ATAT-TAT-AATTATA
5701 ATA
1 ATA
5704 ATTTATAAGA
Statistics
Matches: 63, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
11 5 0.08
12 4 0.06
13 13 0.21
14 11 0.17
15 25 0.40
16 5 0.08
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.47
Consensus pattern (14 bp):
ATATTATAATTATA
Found at i:5785 original size:17 final size:17
Alignment explanation
Indices: 5763--5802 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
5753 TAATTTTAAT
5763 TAATATGAA-AATAATTA
1 TAATAT-AATAATAATTA
*
5780 TAATATAATTATAATTA
1 TAATATAATAATAATTA
5797 TAATAT
1 TAATAT
5803 TGATTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TAATATAATAATAATTA
Found at i:5789 original size:32 final size:28
Alignment explanation
Indices: 5721--5783 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 28
5711 AGAAAGATTG
*
5721 TTATTATAATTTTAA-T-ATTTGAAATA
1 TTATTATAATTTTAATTAATATGAAATA
5747 TTATTATAATTTTAATTAATATGAAA-A
1 TTATTATAATTTTAATTAATATGAAATA
*
5774 TAATTATAAT
1 TTATTATAAT
5784 ATAATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 15 0.45
27 11 0.33
28 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
TTATTATAATTTTAATTAATATGAAATA
Found at i:5864 original size:24 final size:25
Alignment explanation
Indices: 5837--5926 Score: 72
Period size: 24 Copynumber: 3.9 Consensus size: 25
5827 TATTGTCAAT
5837 ATTA-TTATTAATTTTATAAATT-A
1 ATTATTTATTAATTTTATAAATTAA
*
5860 A--A-TTA-TAATATTA-AAATTGAA
1 ATTATTTATTAATTTTATAAATT-AA
*
5881 ATTATTTATT-ATTTATATTAA-TAA
1 ATTATTTATTAATTT-TATAAATTAA
*
5905 ATTATTTATTAATTTAATAAAT
1 ATTATTTATTAATTTTATAAAT
5927 ATTATTATTA
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
19 5 0.10
20 7 0.13
21 6 0.12
23 2 0.04
24 22 0.42
25 8 0.15
26 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (25 bp):
ATTATTTATTAATTTTATAAATTAA
Found at i:5882 original size:20 final size:20
Alignment explanation
Indices: 5840--5885 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
5830 TGTCAATATT
*
5840 ATTATTAATTTTATAAATTAA
1 ATTA-TAATATTATAAATTAA
5861 ATTATAATATTA-AAATTGAA
1 ATTATAATATTATAAATT-AA
5881 ATTAT
1 ATTAT
5886 TTATTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 5 0.22
20 14 0.61
21 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTATAATATTATAAATTAA
Found at i:5927 original size:24 final size:24
Alignment explanation
Indices: 5879--5927 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
5869 ATTAAAATTG
*
5879 AAATTATTTATTATTTATATTAAT
1 AAATTATTTATTATTTATATAAAT
5903 AAATTATTTATTAATTTA-ATAAAT
1 AAATTATTTATT-ATTTATATAAAT
5927 A
1 A
5928 TTATTATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
AAATTATTTATTATTTATATAAAT
Found at i:5937 original size:24 final size:23
Alignment explanation
Indices: 5836--5936 Score: 81
Period size: 21 Copynumber: 4.5 Consensus size: 23
5826 TTATTGTCAA
*
5836 TATTATTATTAAT-TTTATAAAT
1 TATTATTATTAATATTAATAAAT
*
5858 TA-AATTA-TAATATTAAAATTGAAAT
1 TATTATTATTAATATT--AA-T-AAAT
*
5883 TATTTATTATTTATATTAATAAAT
1 TA-TTATTATTAATATTAATAAAT
5907 TA-T-TTATTAAT-TTAATAAA-
1 TATTATTATTAATATTAATAAAT
5926 TATTATTATTA
1 TATTATTATTA
5937 TAATATTATT
Statistics
Matches: 64, Mismatches: 5, Indels: 21
0.71 0.06 0.23
Matches are distributed among these distances:
19 2 0.03
20 13 0.20
21 19 0.30
22 3 0.05
23 1 0.02
24 7 0.11
25 7 0.11
26 2 0.03
27 4 0.06
28 6 0.09
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
TATTATTATTAATATTAATAAAT
Found at i:6075 original size:22 final size:22
Alignment explanation
Indices: 6025--6075 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
6015 AATAATTTCA
*
6025 TAATTATAATATAAATTATTGT
1 TAATTATAATATAAATTATTGC
* *
6047 TATTTATAAT-TTAATTATTGAC
1 TAATTATAATATAAATTATTG-C
6069 TAATTAT
1 TAATTAT
6076 TTTGACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (22 bp):
TAATTATAATATAAATTATTGC
Found at i:6573 original size:18 final size:19
Alignment explanation
Indices: 6545--6580 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6535 ATTATTAATT
6545 AATTGTAATAAATAATTAC
1 AATTGTAATAAATAATTAC
*
6564 AATT-TAATAAATTATTA
1 AATTGTAATAAATAATTA
6581 GTAATTTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (19 bp):
AATTGTAATAAATAATTAC
Found at i:7037 original size:20 final size:21
Alignment explanation
Indices: 7014--7060 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
7004 ATAAGACTAT
*
7014 TAATAATAATA-AATTATTAA
1 TAATAATAATATAATTATAAA
7034 TAAT-ATAATATAATTATAAA
1 TAATAATAATATAATTATAAA
7054 TAATAAT
1 TAATAAT
7061 TATTTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 6 0.25
20 16 0.67
21 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATAATAATATAATTATAAA
Found at i:7384 original size:18 final size:17
Alignment explanation
Indices: 7336--7376 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7326 TTACTTATTA
*
7336 ATTATTATACTTTAACTT
1 ATTA-TATAATTTAACTT
7354 ATTATATAATTTAAC-T
1 ATTATATAATTTAACTT
7370 ATTATAT
1 ATTATAT
7377 TTAATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 10 0.45
18 4 0.18
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTATATAATTTAACTT
Found at i:7621 original size:16 final size:16
Alignment explanation
Indices: 7600--7632 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7590 AATATTAAGA
*
7600 TATGATATTAATAATT
1 TATGATATTAACAATT
7616 TATGATATTAACAATT
1 TATGATATTAACAATT
7632 T
1 T
7633 GAAGTATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (16 bp):
TATGATATTAACAATT
Found at i:7947 original size:23 final size:21
Alignment explanation
Indices: 7907--7948 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
7897 ACTAATTTAT
7907 TCTATTAATTAATGATTATAA
1 TCTATTAATTAATGATTATAA
*
7928 TCTATTCATATTAATTATTAT
1 TCTATT-A-ATTAATGATTAT
7949 TAATAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (21 bp):
TCTATTAATTAATGATTATAA
Found at i:8110 original size:23 final size:23
Alignment explanation
Indices: 8083--8133 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
8073 CTTATTTAGT
*
8083 TTTATAAAACAATTTTTT-ATTAA
1 TTTAT-AAACAATTTTTTAAATAA
* *
8106 TTTATTAATAATTTTTTAAATAA
1 TTTATAAACAATTTTTTAAATAA
8129 TTTAT
1 TTTAT
8134 TTAAATTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTATAAACAATTTTTTAAATAA
Found at i:8129 original size:12 final size:11
Alignment explanation
Indices: 8093--8137 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
8083 TTTATAAAAC
*
8093 AATTTTTTATT
1 AATTTTTTAAT
*
8104 AATTTATTAAT
1 AATTTTTTAAT
8115 AATTTTTTAAAT
1 AATTTTTT-AAT
8127 AATTTATTTAA
1 AATTT-TTTAA
8138 ATTATATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
11 16 0.55
12 10 0.34
13 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
AATTTTTTAAT
Found at i:8446 original size:19 final size:22
Alignment explanation
Indices: 8422--8465 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
8412 ATAATTACAC
8422 TATTAATTA-TTA-AATTT-AT
1 TATTAATTATTTAGAATTTAAT
8441 TATTAATTATTTAGAATTTAAT
1 TATTAATTATTTAGAATTTAAT
8463 TAT
1 TAT
8466 AAAATATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 3 0.14
21 5 0.23
22 5 0.23
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TATTAATTATTTAGAATTTAAT
Found at i:8463 original size:34 final size:34
Alignment explanation
Indices: 8424--8488 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
8414 AATTACACTA
* * *
8424 TTAATTATTAAATTTATT-ATTAATTATTTAGAAT
1 TTAATTATAAAATATATTCA-TAATAATTTAGAAT
8458 TTAATTATAAAATATATTCATAATAATTTAG
1 TTAATTATAAAATATATTCATAATAATTTAG
8489 TATGTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (34 bp):
TTAATTATAAAATATATTCATAATAATTTAGAAT
Found at i:8576 original size:16 final size:16
Alignment explanation
Indices: 8552--8600 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
8542 ATAGTAATTT
8552 ATATAATATTACTAATA
1 ATATAATATTA-TAATA
*
8569 AT-TAATATTATTATA
1 ATATAATATTATAATA
8584 ATATAATAATTATAATA
1 ATATAAT-ATTATAATA
8601 TTTTTATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.21
16 12 0.43
17 10 0.36
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATAATATTATAATA
Found at i:8587 original size:11 final size:11
Alignment explanation
Indices: 8571--8614 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
8561 TACTAATAAT
8571 TAATATTATTA
1 TAATATTATTA
8582 TAATATAATAATTA
1 TAATAT--T-ATTA
*
8596 TAATATTTTTA
1 TAATATTATTA
8607 TAATATTA
1 TAATATTA
8615 GTAATTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 1 0.04
14 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATATTATTA
Found at i:8611 original size:52 final size:57
Alignment explanation
Indices: 8508--8619 Score: 144
Period size: 52 Copynumber: 2.0 Consensus size: 57
8498 TTAATAATAT
*
8508 ATAAATAATATTATATATGATATAACTAATTAAAATAGTAATTTATATAATATTACTA
1 ATAAATAATATTATATATAATATAACTAATTAAAATAGT-ATTTATATAATATTACTA
* * *
8566 ATAATTAATATTAT-TATAATATAA-TAATTATAATA-T-TTT-TATAATATTAGTA
1 ATAAATAATATTATATATAATATAACTAATTAAAATAGTATTTATATAATATTACTA
8618 AT
1 AT
8620 TTTGTTATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
52 14 0.28
53 3 0.06
55 1 0.02
56 10 0.20
57 9 0.18
58 13 0.26
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.46
Consensus pattern (57 bp):
ATAAATAATATTATATATAATATAACTAATTAAAATAGTATTTATATAATATTACTA
Found at i:8938 original size:12 final size:12
Alignment explanation
Indices: 8921--8946 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8911 GAAATATTAA
8921 TAATTAATAATT
1 TAATTAATAATT
8933 TAATTAATAATT
1 TAATTAATAATT
8945 TA
1 TA
8947 TTTTTAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATTAATAATT
Found at i:9877 original size:18 final size:18
Alignment explanation
Indices: 9852--9895 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
9842 ATTTACTATA
*
9852 ATTATAATAGTATTAATTT
1 ATTATAATAATA-TAATTT
9871 A-TATAATAATATAATTT
1 ATTATAATAATATAATTT
9888 ATTATAAT
1 ATTATAAT
9896 TATTATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 7 0.30
18 15 0.65
19 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
ATTATAATAATATAATTT
Found at i:9920 original size:22 final size:22
Alignment explanation
Indices: 9890--9935 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
9880 TATAATTTAT
9890 TATAATTATTATTAAAATAT-AA
1 TATAATTATTATT-AAATATGAA
* *
9912 TATATTTATTGTTAAATATGAA
1 TATAATTATTATTAAATATGAA
9934 TA
1 TA
9936 GATTATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TATAATTATTATTAAATATGAA
Found at i:9941 original size:21 final size:21
Alignment explanation
Indices: 9894--9941 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
9884 ATTTATTATA
*
9894 ATTATTATTAAAATATAATAT
1 ATTATTATTAAAATATAATAG
*
9915 ATTTATTGTT-AAATATGAATAG
1 A-TTATTATTAAAATAT-AATAG
9937 ATTAT
1 ATTAT
9942 AATCATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
ATTATTATTAAAATATAATAG
Found at i:10328 original size:14 final size:13
Alignment explanation
Indices: 10300--10398 Score: 50
Period size: 14 Copynumber: 7.8 Consensus size: 13
10290 TATATAATTG
* *
10300 TATAATATTTATA
1 TATATTATTAATA
10313 TATATTATT-ATA
1 TATATTATTAATA
*
10325 TATAATAATTAATA
1 TAT-ATTATTAATA
* *
10339 TAAAATAATTAATA
1 T-ATATTATTAATA
**
10353 -ATA-T-CCAAT-
1 TATATTATTAATA
10362 TATA-TATT-ATA
1 TATATTATTAATA
10373 TAATATTATTAATA
1 T-ATATTATTAATA
10387 TATATTAATTAA
1 TATATT-ATTAA
10399 ATTAATATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
10 9 0.13
11 1 0.01
12 11 0.16
13 22 0.33
14 23 0.34
15 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
TATATTATTAATA
Found at i:10376 original size:25 final size:23
Alignment explanation
Indices: 10301--10393 Score: 62
Period size: 25 Copynumber: 3.8 Consensus size: 23
10291 ATATAATTGT
**
10301 ATAATATTTATATATATTATTATA
1 ATAATATCAATATATATTA-TATA
* * *
10325 TATAATAATTAATATAAAATA-ATTA
1 -ATAAT-ATCAATATATATTATA-TA
10350 ATAATATCCAATTATATATTATATA
1 ATAATAT-CAA-TATATATTATATA
* *
10375 ATATTATTAATATATATTA
1 ATAATATCAATATATATTA
10394 ATTAAATTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
23 11 0.20
24 10 0.18
25 22 0.40
26 12 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
ATAATATCAATATATATTATATA
Found at i:10392 original size:10 final size:10
Alignment explanation
Indices: 10304--10406 Score: 54
Period size: 10 Copynumber: 10.0 Consensus size: 10
10294 TAATTGTATA
*
10304 ATATTTATAT
1 ATATTAATAT
*
10314 ATATTATTAT
1 ATATTAATAT
10324 ATA-TAATA-
1 ATATTAATAT
*
10332 ATTAATATAAAAT
1 A-T-AT-TAATAT
10345 A-ATTAATA-
1 ATATTAATAT
*
10353 ATATCCAATTAT
1 ATAT-TAA-TAT
10365 ATATTATATAAT
1 ATATTA-AT-AT
10377 ATTATTAATAT
1 A-TATTAATAT
10388 ATATTAAT-T
1 ATATTAATAT
*
10397 AAATTAATAT
1 ATATTAATAT
10407 TTAATTTATT
Statistics
Matches: 72, Mismatches: 8, Indels: 26
0.68 0.08 0.25
Matches are distributed among these distances:
8 2 0.03
9 19 0.26
10 24 0.33
11 7 0.10
12 14 0.19
13 6 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (10 bp):
ATATTAATAT
Found at i:10416 original size:34 final size:33
Alignment explanation
Indices: 10346--10426 Score: 83
Period size: 34 Copynumber: 2.4 Consensus size: 33
10336 ATATAAAATA
* * * *
10346 ATTAATAATATCCAATTATA-TATTATATAATATT
1 ATTAATAATAT-TAATTAAATTAATATTTAAT-TT
10380 ATTAATATATATTAATTAAATTAATATTTAATTT
1 ATTAATA-ATATTAATTAAATTAATATTTAATTT
10414 ATTAGATAATATT
1 ATTA-ATAATATT
10427 GGATTTAGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 24 0.60
35 16 0.40
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (33 bp):
ATTAATAATATTAATTAAATTAATATTTAATTT
Found at i:10838 original size:23 final size:23
Alignment explanation
Indices: 10811--10871 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
10801 TATAAATTTC
10811 TATAATAATGTAA-TATTAGTTAA
1 TATAATAAT-TAATTATTAGTTAA
*
10834 TATAATAA-TAATTATTATTTAA
1 TATAATAATTAATTATTAGTTAA
10856 TAGTAATAATT-ATTAT
1 TA-TAATAATTAATTAT
10872 ATAATAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 3 0.09
22 11 0.32
23 19 0.56
24 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
TATAATAATTAATTATTAGTTAA
Found at i:10862 original size:17 final size:17
Alignment explanation
Indices: 10836--10885 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
10826 TTAGTTAATA
10836 TAATAATAATTATTATT
1 TAATAATAATTATTATT
* *
10853 TAATAGTAATAATTA-T
1 TAATAATAATTATTATT
10869 TATATAATAATTATTAT
1 TA-ATAATAATTATTAT
10886 ATTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 3 0.11
17 24 0.89
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
TAATAATAATTATTATT
Found at i:10876 original size:14 final size:14
Alignment explanation
Indices: 10859--10909 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
10849 TATTTAATAG
10859 TAATAATTATTATA
1 TAATAATTATTATA
10873 TAATAATTATTATA
1 TAATAATTATTATA
*
10887 T--TATTTATTAT-
1 TAATAATTATTATA
*
10898 TATTAATTATTA
1 TAATAATTATTA
10910 ATTTATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
11 1 0.03
12 9 0.27
13 8 0.24
14 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAATAATTATTATA
Found at i:10905 original size:39 final size:37
Alignment explanation
Indices: 10816--10909 Score: 102
Period size: 39 Copynumber: 2.5 Consensus size: 37
10806 ATTTCTATAA
10816 TAAT-GTAAT-ATTAGTTAATATAATAATAATTATTATT
1 TAATAGTAATAATTA-TT-ATATAATAATAATTATTATT
*
10853 TAATAGTAATAATTATTATATAATAATTATTATATTATT
1 TAATAGTAATAATTATTATATAATAA-TAAT-TATTATT
* * *
10892 TATTATTATTAATTATTA
1 TAATAGTAATAATTATTA
10910 ATTTATATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
37 13 0.27
38 10 0.20
39 26 0.53
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (37 bp):
TAATAGTAATAATTATTATATAATAATAATTATTATT
Found at i:10925 original size:25 final size:25
Alignment explanation
Indices: 10862--10926 Score: 50
Period size: 22 Copynumber: 2.6 Consensus size: 25
10852 TTAATAGTAA
*
10862 TAATTATTATATAATA-ATTATTA-
1 TAATTATTATATTATATATTATTAT
10885 T-ATTATT-TATTAT-TATTAATTAT
1 TAATTATTATATTATATATT-ATTAT
10908 TAATTTATATATACTTATA
1 TAA-TTAT-TATA-TTATA
10927 AATATACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 12
0.71 0.02 0.27
Matches are distributed among these distances:
21 8 0.25
22 10 0.31
23 2 0.06
24 1 0.03
25 4 0.12
26 1 0.03
27 2 0.06
28 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
TAATTATTATATTATATATTATTAT
Found at i:11307 original size:18 final size:17
Alignment explanation
Indices: 11279--11369 Score: 62
Period size: 18 Copynumber: 5.1 Consensus size: 17
11269 ATAATTATAA
*
11279 AATACTAATTATCATTAT
1 AATATTAATTAT-ATTAT
* *
11297 CATATTAATTAACATT-T
1 AATATTAATT-ATATTAT
11314 AATATTTAATTAATATTGAT
1 AATA-TTAATT-ATATT-AT
*
11334 TA-ATTAATTA-ATTAT
1 AATATTAATTATATTAT
11349 AATAATTAATTATAATTAT
1 AAT-ATTAATTAT-ATTAT
11368 AA
1 AA
11370 AAATAGAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
15 3 0.05
16 3 0.05
17 13 0.22
18 28 0.48
19 9 0.16
20 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (17 bp):
AATATTAATTATATTAT
Found at i:11356 original size:13 final size:13
Alignment explanation
Indices: 11338--11364 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11328 ATTGATTAAT
11338 TAATTAATTATAA
1 TAATTAATTATAA
11351 TAATTAATTATAA
1 TAATTAATTATAA
11364 T
1 T
11365 TATAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTAATTATAA
Found at i:11525 original size:28 final size:28
Alignment explanation
Indices: 11489--11548 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
11479 AACAATCATT
* * *
11489 ATAACATTAATTATTTTATTATAATTAA
1 ATAAAATTAATTATATAATTATAATTAA
* *
11517 ATAAAATTAATTATATAATTATTATTAT
1 ATAAAATTAATTATATAATTATAATTAA
11545 ATAA
1 ATAA
11549 TAAATAGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
ATAAAATTAATTATATAATTATAATTAA
Found at i:11560 original size:34 final size:36
Alignment explanation
Indices: 11496--11562 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
11486 ATTATAACAT
11496 TAATTATTTTATTATAATTAAATAAAATTAATTATA
1 TAATTATTTTATTATAATTAAATAAAATTAATTATA
*
11532 TAATTATTATTA-TATAA-TAAAT-AGATTAATT
1 TAATTATT-TTATTATAATTAAATAAAATTAATT
11563 TAAACAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 8 0.28
35 5 0.17
36 13 0.45
37 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
TAATTATTTTATTATAATTAAATAAAATTAATTATA
Found at i:11625 original size:24 final size:24
Alignment explanation
Indices: 11574--11654 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
11564 AAACAAAATA
* * *
11574 TTAATTAATATATTAAACTAATATTT
1 TTAATAAAT-TATT-AATTAATAATT
11600 TTAATAAATTATTAATTAATAATT
1 TTAATAAATTATTAATTAATAATT
* * *
11624 TTGATTATTTAATT-ATTAATAATT
1 TTAATAAATT-ATTAATTAATAATT
11648 TTAATAA
1 TTAATAA
11655 TAATATAAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
24 31 0.67
25 7 0.15
26 8 0.17
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (24 bp):
TTAATAAATTATTAATTAATAATT
Found at i:11791 original size:21 final size:21
Alignment explanation
Indices: 11767--11810 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
11757 ATTGTTAATA
11767 ATTAACAATAAAT-AATAATTT
1 ATTAA-AATAAATAAATAATTT
* *
11788 ATTAAATTTAATAAATAATTT
1 ATTAAAATAAATAAATAATTT
11809 AT
1 AT
11811 AATATAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTAAAATAAATAAATAATTT
Found at i:11873 original size:18 final size:20
Alignment explanation
Indices: 11817--11899 Score: 66
Period size: 19 Copynumber: 4.2 Consensus size: 20
11807 TTATAATATA
*
11817 ATTAAT-TATAATTCTTATT
1 ATTAATATATAATTATTATT
* *
11836 ATAAAGATAATAATTATTATT
1 ATTAATAT-ATAATTATTATT
11857 -TTAATATATAATT-TTATT
1 ATTAATATATAATTATTATT
*
11875 AATAATA-ATAAAGTTATTAATT
1 ATTAATATAT-AA-TTATT-ATT
11897 ATT
1 ATT
11900 TTAATAATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
18 7 0.14
19 17 0.34
20 8 0.16
21 13 0.26
22 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (20 bp):
ATTAATATATAATTATTATT
Found at i:11951 original size:36 final size:37
Alignment explanation
Indices: 11864--11953 Score: 96
Period size: 36 Copynumber: 2.4 Consensus size: 37
11854 ATTTTAATAT
**
11864 ATAATTTTATTAATAATAATAAAGTTATTAATTATTTTA
1 ATAA-TTTA-TAATAATAATAAAGTTATTAATTATCCTA
*
11903 ATAATTTATAATACTAATAATA-TTA-TAATTATCCTA
1 ATAATTTATAATAATAATAA-AGTTATTAATTATCCTA
11939 ATAA-TTACTAATAAT
1 ATAATTTA-TAATAAT
11954 GATTATCTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
35 3 0.07
36 19 0.42
37 14 0.31
38 5 0.11
39 4 0.09
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (37 bp):
ATAATTTATAATAATAATAAAGTTATTAATTATCCTA
Found at i:11971 original size:30 final size:28
Alignment explanation
Indices: 11896--11971 Score: 66
Period size: 30 Copynumber: 2.6 Consensus size: 28
11886 AGTTATTAAT
* *
11896 TATTTTAA-TAATTTATAATACTAATAA
1 TATTATAATTAATTAATAATACTAATAA
11923 TATTATAATT-ATCCTAATAATTACTAATAA
1 TATTATAATTAAT--TAATAA-TACTAATAA
**
11953 TGATTATCTTTAATTAATA
1 T-ATTATAATTAATTAATA
11972 TTATATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 9 0.23
28 1 0.03
29 5 0.13
30 15 0.38
31 7 0.18
32 2 0.05
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (28 bp):
TATTATAATTAATTAATAATACTAATAA
Found at i:12182 original size:22 final size:22
Alignment explanation
Indices: 12156--12200 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
12146 TATGAGTGGA
* **
12156 AATATGGATTATCTATATTTAT
1 AATATAGATTATAAATATTTAT
*
12178 AATATAGTTTATAAATATTTAT
1 AATATAGATTATAAATATTTAT
12200 A
1 A
12201 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (22 bp):
AATATAGATTATAAATATTTAT
Found at i:12205 original size:17 final size:18
Alignment explanation
Indices: 12180--12213 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12170 ATATTTATAA
12180 TATAGTTT-ATAAATATT
1 TATAGTTTAATAAATATT
*
12197 TATATTTTAATAAATAT
1 TATAGTTTAATAAATAT
12214 AAATAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATAGTTTAATAAATATT
Found at i:12401 original size:12 final size:12
Alignment explanation
Indices: 12377--12488 Score: 65
Period size: 12 Copynumber: 10.4 Consensus size: 12
12367 ATATACACTT
12377 ATTAATAAATATA
1 ATTAAT-AATATA
12390 ATTAATAATATA
1 ATTAATAATATA
12402 ATT-AT--T-TA
1 ATTAATAATATA
12410 ATTAAATAATA-A
1 ATT-AATAATATA
12422 ATTAATAA-ATA
1 ATTAATAATATA
* *
12433 GTGAA-AATATA
1 ATTAATAATATA
*
12444 A-TACT-AT-TA
1 ATTAATAATATA
12453 ATTAATAATAT-
1 ATTAATAATATA
12464 A-T-AT--TATA
1 ATTAATAATATA
*
12472 ATTAATATTATA
1 ATTAATAATATA
12484 ATTAA
1 ATTAA
12489 CTATATTTAG
Statistics
Matches: 77, Mismatches: 6, Indels: 33
0.66 0.05 0.28
Matches are distributed among these distances:
7 3 0.04
8 6 0.08
9 7 0.09
10 14 0.18
11 17 0.22
12 24 0.31
13 6 0.08
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (12 bp):
ATTAATAATATA
Found at i:12630 original size:14 final size:14
Alignment explanation
Indices: 12571--12630 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
12561 AACCAATTTA
12571 TATAATTATAATTA-
1 TATAATTA-AATTAT
*
12585 TATAA-TAACTTAT
1 TATAATTAAATTAT
12598 TAGTAATTAAA-TAT
1 TA-TAATTAAATTAT
*
12612 T-TAATTAAATTCT
1 TATAATTAAATTAT
12625 TATAAT
1 TATAAT
12631 AATAATCGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
12 12 0.32
13 7 0.18
14 16 0.42
15 3 0.08
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (14 bp):
TATAATTAAATTAT
Found at i:12759 original size:14 final size:14
Alignment explanation
Indices: 12742--12791 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
12732 AATTGGCTAT
12742 TATTAATTATTTTA
1 TATTAATTATTTTA
*
12756 TATTAATTATTATA
1 TATTAATTATTTTA
*
12770 TATATAATAATATATTA
1 TAT-TAAT--TATTTTA
12787 TATTA
1 TATTA
12792 TACAATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 16 0.53
15 4 0.13
16 2 0.07
17 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATTAATTATTTTA
Found at i:13077 original size:20 final size:20
Alignment explanation
Indices: 13026--13079 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
13016 AATAATTAAG
*
13026 TAAAATAATAATTAT-TAGTT
1 TAAAAT-ATAATTATATAATT
*
13046 TAAATTAT-ATTATATAATT
1 TAAAATATAATTATATAATT
13065 TAAAATATAATTATA
1 TAAAATATAATTATA
13080 ACTTAATAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 5 0.17
19 13 0.45
20 11 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
TAAAATATAATTATATAATT
Found at i:13797 original size:181 final size:177
Alignment explanation
Indices: 13407--13981 Score: 628
Period size: 181 Copynumber: 3.2 Consensus size: 177
13397 ATTTGAAATA
* * *
13407 AAATTGTTAGT-ACTTTTTGTTTTGTCATAAAACAATTATTTTTGAAT-GTATAAGTTTA-TCTG
1 AAATTGTTA-TAACCTTTTGTTTTGTCATAAAATAATTATTTTTG--TCGTATAAATTTATTC-G
* * *
13469 AAATAAAATAATACTAATTTATTAATATTTCAAG-AATT--AGTATGAGATTCAAAAAATAAATC
62 AAATAAAATAATACTAATTTATTAATA-TTCTAGAAATTAAAGTAAGAGATTCAAAAAATAAATT
**
13531 TGTTTATTGAATAAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTC
126 TGTTTATTGAACCAGTTCAAATAATTATAACTA-TTGAACAATTATCTATTTC
* *
13584 AAATTGTTATAACATTTTGTTTTGTCATAAAATAATTATTTTTGTTCGTATAAATTTATTCAAAA
1 AAATTGTTATAACCTTTTGTTTTGTCATAAAATAATTATTTTTG-TCGTATAAATTTATTCGAAA
* * * *
13649 TAAAATAATACTAAATTAATAATATTCTAGAAATTCACAACTAAGAGATTGAAAAAATAAATTTG
65 TAAAATAATACTAATTTATTAATATTCTAGAAATT-A-AAGTAAGAGATTCAAAAAATAAATTTG
* * * ** *
13714 TTTGTTGAACCAGTTTAAATAGTTA-AGACTATATGAGGAATTATCTATTTT
128 TTTATTGAACCAGTTCAAATAATTATA-ACTAT-TGAACAATTATCTATTTC
* * * * * *
13765 AAATTGTTATGACCTTTTGTTTTGTTATAAAATAATTATTTTAG-CTTATACAAGCTTATTCGTA
1 AAATTGTTATAACCTTTTGTTTTGTCATAAAATAATTATTTTTGTCGTATA-AA-TTTATTCGAA
* * * *
13829 ATAAAATAAAACTAATTTATTAATATT-TCAAAAATTTATAAGTAAGAGATTTAAAAAATAATTT
64 ATAAAATAATACTAATTTATTAATATTCT-AGAAA-TTA-AAGTAAGAGATTCAAAAAATAAATT
* *
13893 TATTTATTGAACCAGTTCAAATAATTATAACTATTGGAACAATTATATATTTC
126 TGTTTATTGAACCAGTTCAAATAATTATAACTATT-GAACAATTATCTATTTC
* *
13946 AATTTGTTATAACCTTTTATTTTGTCATAAAATAAT
1 AAATTGTTATAACCTTTTGTTTTGTCATAAAATAAT
13982 ACTAATCAAA
Statistics
Matches: 334, Mismatches: 48, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
176 7 0.02
177 79 0.24
178 2 0.01
179 5 0.01
180 6 0.02
181 232 0.69
182 3 0.01
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (177 bp):
AAATTGTTATAACCTTTTGTTTTGTCATAAAATAATTATTTTTGTCGTATAAATTTATTCGAAAT
AAAATAATACTAATTTATTAATATTCTAGAAATTAAAGTAAGAGATTCAAAAAATAAATTTGTTT
ATTGAACCAGTTCAAATAATTATAACTATTGAACAATTATCTATTTC
Found at i:14975 original size:120 final size:120
Alignment explanation
Indices: 14739--14968 Score: 343
Period size: 120 Copynumber: 1.9 Consensus size: 120
14729 TTAAAAAATG
* * **
14739 AATCTATTTATTGAACAAGTTCAAATAGTTATGGCTATTTGAACAGTTATCTATTTCAAATTGCT
1 AATCTATTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
* ** *
14804 ATGACCTTATGTTTTGTCATAAAATAATTTTTTCTATTTATACAAACTTATTTCA
66 ATGACCTTATGTTTTGTCACAAAATAATCATTTCTATTCATACAAACTTATTTCA
* * *
14859 AATCTATTTATTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATT
1 AATCTATTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
* *
14924 ATGACCTTTTGTTTTGTCACAAAATAATCATTTCTGTTCATACAA
66 ATGACCTTATGTTTTGTCACAAAATAATCATTTCTATTCATACAA
14969 GTTTATTCGA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (120 bp):
AATCTATTTATTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
ATGACCTTATGTTTTGTCACAAAATAATCATTTCTATTCATACAAACTTATTTCA
Found at i:15296 original size:238 final size:239
Alignment explanation
Indices: 14852--15338 Score: 616
Period size: 238 Copynumber: 2.0 Consensus size: 239
14842 TATACAAACT
* ** * * * * *
14852 TATTTCAAATCTATTTATTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCA
1 TATTTCAAATATATTTATCAAATAAATTCAAATAGTAATAACTATTTAAACAATTATCTATTTCA
* * ** *
14917 AATCATTATGACCTTTTGTTTTGTCACAAAATAATCATTTCTGTTCATACAAGTTTATTCGAAAT
66 AATCATTATGACCTTTTGTTTTGTCACAAAAAAATCATATCAATTCATACAAGCTTATTCGAAAT
* * * * * * *
14982 AACATAATTCTAATTTATTAATATTCCAAAAATTTACCAGTAAGAGATTTAAAAAATGAATCTAT
131 AAAACAATACTAACTTATTAATATTCAAAAAATTAACCAGTAAGAGATTTAAAAAATGAATATAT
** *
15047 TTATTGAACAAGTTCAAATAGTTATGGCTATTTGAACAATTATC
196 TTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATC
* *
15091 TATTTCAAATATGTTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCA
1 TATTTCAAATATATTTATCAAATAAATTCAAATAGTAATAACTATTTAAACAATTATCTATTTCA
** * * ** * * *
15156 AATTGTTTTGATCTTTTGTTTTGTCA-AAAAAAATTGTATCAATTTATATAAGCTTATTTGAAAT
66 AATCATTATGACCTTTTGTTTTGTCACAAAAAAATCATATCAATTCATACAAGCTTATTCGAAAT
** *
15220 AAAACAATACTAACTTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAAAAAATGAATATGT
131 AAAACAATACTAACTTATTAATATTCAAAAAATTAACCAGTAAGAGATTTAAAAAATGAATATAT
*
15285 TTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATC
196 TTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATC
*
15329 TATTTTAAAT
1 TATTTCAAAT
15339 CATTAAGACC
Statistics
Matches: 209, Mismatches: 39, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
238 132 0.63
239 77 0.37
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (239 bp):
TATTTCAAATATATTTATCAAATAAATTCAAATAGTAATAACTATTTAAACAATTATCTATTTCA
AATCATTATGACCTTTTGTTTTGTCACAAAAAAATCATATCAATTCATACAAGCTTATTCGAAAT
AAAACAATACTAACTTATTAATATTCAAAAAATTAACCAGTAAGAGATTTAAAAAATGAATATAT
TTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATC
Found at i:15614 original size:23 final size:25
Alignment explanation
Indices: 15587--15641 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
15577 ATAAAATAAT
15587 ATTAATTTA-TTAAA-ATTCAAAAA
1 ATTAATTTACTTAAAGATTCAAAAA
* *
15610 ATTAA-TAACTTAAAGATTTAAAAA
1 ATTAATTTACTTAAAGATTCAAAAA
*
15634 ATAAATTT
1 ATTAATTT
15642 GTTTATCGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 10 0.40
24 12 0.48
25 1 0.04
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATTTACTTAAAGATTCAAAAA
Found at i:15977 original size:181 final size:180
Alignment explanation
Indices: 15097--16095 Score: 918
Period size: 181 Copynumber: 5.6 Consensus size: 180
15087 TATCTATTTC
* * * * * *
15097 AAATATGTTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGT
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTGT
* * * * * * * *
15162 TTTGATCTTTTGTTTTGTCA-AAAAAAATTGTATCAATTTATATAAGCTTATT-TGAAATAAAAC
66 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAG-AATAAAAT
* * * *
15225 AATACTAACTTATTAATATTCAAAAAATTAATGAG-TAAGAGATTTAAAAAAT
129 AATATTAATTTATTAATATTCTAAAAATTAATAAGTTAA-AGATTTAAAAAAT
* * * * * **
15277 GAATATGTTTACCGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTTAAATCAT
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTGT
* * * * * **
15342 TAAGACCGTTTATTTTGTCATAAAATAATTGTTTAC-ATTCACACAAGCTTATTTTGAATAAAAT
66 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTT-CTATTCATACAAGCTTATTCAGAATAAAAT
* * ** *
15406 AATATAAATTTACTAATATTCTAAGGATTAATAAG-TAAAAATTTAAAAAAT
129 AATATTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * ** * * *
15457 AAATCTATTTTCTAAACACGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGT
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTGT
* * * * *
15522 TATGACCTTT-TCTTGTCATACACCAATTGTTTCTATTCATA-AAGGCTTATTTAGAATAAAATA
66 TATGACTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAA-GCTTATTCAGAATAAAATA
* * *
15585 ATATTAATTTATTAAAATTCAAAAAATTAATAACTTAAAGATTTAAAAAAT
130 ATATTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * * * *
15636 AAATTTGTTTATCGAGCGAA-TTCAAATAGTTATGGCTACTTAAATAATTATTTTTATTTCAAAT
1 AAATATGTTTACCGAAC-AAGTTCAAATAGTTATGACTATTTAAATAATTA--TCTATTTCAAAT
* * * * * *
15700 TGTTATGATATTTTGATTTT-TCATGAAACAATAGTTTCTATTCATACAAGTTTACTCAAAATAA
63 TGTTATGA-CTTTTG-TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAA
* * ** *
15764 GATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAATAAT
126 AATAATATTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * *
15819 AAATATGTTTACCGAACAAGTTAAAATAGTCATGTCCATTTAAACT-ATTATCTATTTCAAATTG
1 AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAA-TAATTATCTATTTCAAATTG
* **
15883 TTAGGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAAATTATTCAGAATAAAAT
65 TTATGAC-TTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAAT
* * * * *
15948 AATATTATTTTATTGATATTTTGAAAATTAAT-A---AAAGATTTAAAAATT
129 AATATTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
* * * * *
15996 AAATCTGTTTATC-AGACCAGTTCAAATAG-T-TGACTATTTGAATAGTTATCTATTTCAAATTG
1 AAATATGTTTACCGA-ACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTG
* * * *
16058 GTATGA-TCTTTGTTTTATCATAAAATAATTGTGTCTAT
65 TTATGACT-TTTGTTTTGTCATAAAACAATTGTTTCTAT
16096 AGTAAAATAT
Statistics
Matches: 666, Mismatches: 133, Indels: 46
0.79 0.16 0.05
Matches are distributed among these distances:
173 1 0.00
174 28 0.04
175 30 0.05
176 1 0.00
177 37 0.06
178 69 0.10
179 56 0.08
180 143 0.21
181 170 0.26
182 8 0.01
183 117 0.18
184 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (180 bp):
AAATATGTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTGT
TATGACTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAATAA
TATTAATTTATTAATATTCTAAAAATTAATAAGTTAAAGATTTAAAAAAT
Found at i:16274 original size:32 final size:33
Alignment explanation
Indices: 16195--16275 Score: 78
Period size: 32 Copynumber: 2.5 Consensus size: 33
16185 TATTATAATC
16195 TATTAATTATCAATTATTGCTAATAATTATAAGAA
1 TATTAATTA--AATTATTGCTAATAATTATAAGAA
* * * *
16230 TATAAAAT-AATTATTGGT-A-AATTATTAGTAA
1 TATTAATTAAATTATTGCTAATAATTATAAG-AA
16261 TATTAATTAAATTAT
1 TATTAATTAAATTAT
16276 AATCAAATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
30 8 0.21
31 9 0.24
32 15 0.39
35 6 0.16
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.44
Consensus pattern (33 bp):
TATTAATTAAATTATTGCTAATAATTATAAGAA
Found at i:17426 original size:15 final size:15
Alignment explanation
Indices: 17406--17445 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
17396 CAATAAAAAT
*
17406 AATAATATTATTATC
1 AATAATATAATTATC
*
17421 AATAATATAATTATT
1 AATAATATAATTATC
17436 AA-AATATAAT
1 AATAATATAAT
17446 ATATAGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
AATAATATAATTATC
Found at i:17559 original size:25 final size:24
Alignment explanation
Indices: 17488--17568 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
17478 ATTAATTTAT
17488 TATTATAA-A-ACAATATTAATAA
1 TATTATAATATACAATATTAATAA
*
17510 TTATTTAATAATATA-AATA-AAATAA
1 -TA-TT-ATAATATACAATATTAATAA
17535 TATTATAATATACAATATTATATAA
1 TATTATAATATACAATATTA-ATAA
*
17560 TATAATAAT
1 TATTATAAT
17569 TGTCATAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
22 8 0.17
23 8 0.17
24 5 0.10
25 21 0.44
26 5 0.10
27 1 0.02
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TATTATAATATACAATATTAATAA
Found at i:17999 original size:12 final size:12
Alignment explanation
Indices: 17980--18024 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
17970 ATCAAGTTGT
17980 TTAT-TATTTAA
1 TTATATATTTAA
17991 TTATATATTTAA
1 TTATATATTTAA
* *
18003 TTAAATATTTAT
1 TTATATATTTAA
18015 TTATAATATT
1 TTAT-ATATT
18025 ATAGCTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 4 0.14
12 20 0.69
13 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATATATTTAA
Found at i:18599 original size:13 final size:13
Alignment explanation
Indices: 18581--18615 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
18571 GAATAAGTAC
18581 TTTAATTTAATTA
1 TTTAATTTAATTA
*
18594 TTTAATTTAATTC
1 TTTAATTTAATTA
18607 TTT-ATTTAA
1 TTTAATTTAA
18616 AATTTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTAATTTAATTA
Found at i:18663 original size:21 final size:18
Alignment explanation
Indices: 18633--18681 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 18
18623 TATTCTATAT
*
18633 AAATTTTATAATTATTTAG
1 AAATTATATAATTATTT-G
*
18652 AACAATTATATATTTATTTG
1 -A-AATTATATAATTATTTG
18672 AAATTATATA
1 AAATTATATA
18682 TATAATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 9 0.35
19 1 0.04
20 2 0.08
21 14 0.54
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
AAATTATATAATTATTTG
Found at i:18678 original size:18 final size:18
Alignment explanation
Indices: 18607--18700 Score: 59
Period size: 18 Copynumber: 5.1 Consensus size: 18
18597 AATTTAATTC
*
18607 TTTATTTAAAATT-TATTA
1 TTTATTTGAAATTATA-TA
* *
18625 TTCTATAT-AAATTTTATA
1 TT-TATTTGAAATTATATA
*
18643 ATTATTTAGAACAATTATATA
1 TTTATTT-G-A-AATTATATA
18664 TTTATTTGAAATTATATA
1 TTTATTTGAAATTATATA
* * *
18682 TATAATTG-AATTATTTA
1 TTTATTTGAAATTATATA
18699 TT
1 TT
18701 ATACATTTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
17 13 0.21
18 25 0.41
19 7 0.11
20 2 0.03
21 14 0.23
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTATTTGAAATTATATA
Found at i:19270 original size:40 final size:41
Alignment explanation
Indices: 19190--19325 Score: 204
Period size: 41 Copynumber: 3.4 Consensus size: 41
19180 TCGATGTGCC
* *
19190 TTTATTTTTAAAAGTTGTTATGCCTCTGTTTAGAGGAGCAT
1 TTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCAT
*
19231 TTTATTTTTCAAAGTTGTGGTGCC-CTGTTTAGAGGAGCA-
1 TTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCAT
* *
19270 TTTATTTTTCAAAGTTGTGATGCCTTTGTTTAGAGGAGCTT
1 TTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCAT
*
19311 TTTATTTTTCGAAGT
1 TTTATTTTTCAAAGT
19326 CATTGCACCT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 23 0.27
40 28 0.33
41 35 0.41
ACGTcount: A:0.21, C:0.10, G:0.21, T:0.47
Consensus pattern (41 bp):
TTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCAT
Found at i:19337 original size:41 final size:39
Alignment explanation
Indices: 19190--19358 Score: 130
Period size: 41 Copynumber: 4.2 Consensus size: 39
19180 TCGATGTGCC
* * *
19190 TTTATTTTTAAAAGTTGT-TATGCCTCTGTTTAGAGGAGCAT
1 TTTATTTTTCAAAGTTGTGCA--CCTTTGTTTAGAGGAGC-T
** * *
19231 TTTATTTTTCAAAGTTGTGGTGCC-CTGTTTAGAGGAGCA
1 TTTATTTTTCAAAGTTGT-GCACCTTTGTTTAGAGGAGCT
19270 TTTATTTTTCAAAGTTGTG-ATGCCTTTGTTTAGAGGAGCTT
1 TTTATTTTTCAAAGTTGTGCA--CCTTTGTTTAGAGGAGC-T
* * *
19311 TTTATTTTTCGAAGTCAT-TGCACCTTTATTTAGAAGAGCCT
1 TTTATTTTTCAAAGT--TGTGCACCTTTGTTTAGAGGAG-CT
19352 TTTATTT
1 TTTATTT
19359 ATTTTTTAAA
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
38 1 0.01
39 20 0.18
40 27 0.25
41 55 0.50
42 3 0.03
43 3 0.03
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.47
Consensus pattern (39 bp):
TTTATTTTTCAAAGTTGTGCACCTTTGTTTAGAGGAGCT
Found at i:19866 original size:20 final size:20
Alignment explanation
Indices: 19786--19868 Score: 53
Period size: 20 Copynumber: 4.0 Consensus size: 20
19776 AATAATATTG
**
19786 ATATATTAATGTTAATTATA
1 ATATATTAATAATAATTATA
* * *
19806 ATTTTATAAATGA-AATTAT-
1 A-TATATTAATAATAATTATA
* *
19825 ATAATATTAACTATTCATTTATA
1 AT-ATATTAA-TAAT-AATTATA
19848 ATATATTAATAATAATTATA
1 ATATATTAATAATAATTATA
19868 A
1 A
19869 ATCAATTAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
18 1 0.02
19 6 0.13
20 15 0.32
21 11 0.23
22 12 0.26
23 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (20 bp):
ATATATTAATAATAATTATA
Found at i:19960 original size:61 final size:64
Alignment explanation
Indices: 19825--19960 Score: 147
Period size: 61 Copynumber: 2.2 Consensus size: 64
19815 ATGAAATTAT
* * *
19825 ATAATATTAACTATTCATTTATAATATATTAATAATAATTATAAATCAATTAATACTTAATTTA
1 ATAATATTAATTATTCATTTATAATATATTAATAATAATAATAAATCAATTAATACTTAATGTA
* * * * *
19889 ACTAA-GTTAATTATT-ATTT-TAA-ATATTAATATTTATAATAATATTAATTCATA-TTAATGT
1 A-TAATATTAATTATTCATTTATAATATATTAATAATAATAATAA-ATCAATTAATACTTAATGT
19949 A
64 A
19950 ATAATATTAAT
1 ATAATATTAAT
19961 ATAACTATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
60 3 0.05
61 29 0.48
62 12 0.20
63 4 0.07
64 9 0.15
65 3 0.05
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (64 bp):
ATAATATTAATTATTCATTTATAATATATTAATAATAATAATAAATCAATTAATACTTAATGTA
Found at i:20664 original size:30 final size:29
Alignment explanation
Indices: 20607--20664 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
20597 TATTATTAAA
*
20607 TATAATAATATTATATTTTAATATAATTG
1 TATAATAATATTATATTATAATATAATTG
*
20636 TATAATAACTATTA-ATTAATAATTTAATT
1 TATAATAA-TATTATATT-ATAATATAATT
20665 AATATAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
TATAATAATATTATATTATAATATAATTG
Found at i:20971 original size:21 final size:23
Alignment explanation
Indices: 20945--20996 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
20935 AATTATAAAC
*
20945 AATTATTAAAT-TTATATTAT-T
1 AATTATTAAATAATATATTATAT
20966 AATTATT-AATAATATATTATAT
1 AATTATTAAATAATATATTATAT
*
20988 ACTTATTAA
1 AATTATTAA
20997 TATTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 7 0.27
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATTAAATAATATATTATAT
Found at i:21780 original size:33 final size:32
Alignment explanation
Indices: 21741--21809 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
21731 TTATAGTATA
21741 TAATAATATACT-TAATTATAATTAAATAACTAT
1 TAATAATAT-CTATAATTATAATTAAA-AACTAT
* * *
21774 TAATAATATTTATAATTATATTTATAAACTAT
1 TAATAATATCTATAATTATAATTAAAAACTAT
21806 TAAT
1 TAAT
21810 TATGTTATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 11 0.34
33 21 0.66
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (32 bp):
TAATAATATCTATAATTATAATTAAAAACTAT
Found at i:21856 original size:15 final size:15
Alignment explanation
Indices: 21836--21984 Score: 61
Period size: 15 Copynumber: 9.9 Consensus size: 15
21826 ATTTAACAAT
21836 TTAATATATTTAATA
1 TTAATATATTTAATA
*
21851 TTAATATAATTAATA
1 TTAATATATTTAATA
*
21866 TT-ATATTTTTTAATA
1 TTAATA-TATTTAATA
21881 -TAATA-ATTTTAA-A
1 TTAATATA-TTTAATA
*
21894 -TAATCA-ATTAAATA
1 TTAAT-ATATTTAATA
21908 TCT--TATATTTAATTA
1 T-TAATATATTTAA-TA
*
21923 TTAATATCCTTTAACTA
1 TTAATAT-ATTTAA-TA
21940 -TAAT-TATTTACATA
1 TTAATATATTTA-ATA
21954 --AAGTATTATTTAATTA
1 TTAA-TA-TATTTAA-TA
*
21970 TTAAATATAATTAAT
1 TT-AATATATTTAAT
21985 TAAATTAAAT
Statistics
Matches: 104, Mismatches: 10, Indels: 39
0.68 0.07 0.25
Matches are distributed among these distances:
13 12 0.12
14 26 0.25
15 32 0.31
16 17 0.16
17 13 0.12
18 2 0.02
19 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:21985 original size:17 final size:17
Alignment explanation
Indices: 21963--22013 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
21953 AAAGTATTAT
21963 TTAATTATTAAATATAA
1 TTAATTATTAAATATAA
21980 TTAATTAAATTAAAT-TAA
1 TTAATT--ATTAAATATAA
* *
21998 ATATTCTATTAAATAT
1 TTAAT-TATTAAATAT
22014 TTAATAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 13 0.46
18 7 0.25
19 8 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAATTATTAAATATAA
Found at i:22087 original size:15 final size:16
Alignment explanation
Indices: 22069--22108 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
22059 TCTTAATTCT
22069 TATTTAATTAA-TAAA
1 TATTTAATTAACTAAA
*
22084 TATTTAATTAACTATA
1 TATTTAATTAACTAAA
22100 TATATTAAT
1 TAT-TTAAT
22109 AAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 6 0.27
17 5 0.23
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTAATTAACTAAA
Found at i:22130 original size:25 final size:28
Alignment explanation
Indices: 22075--22142 Score: 72
Period size: 28 Copynumber: 2.5 Consensus size: 28
22065 TTCTTATTTA
*
22075 ATTAATAAATATTTAATTAACTATATAT
1 ATTAATAAATATTTAATTAACTATAAAT
22103 ATTAAT-AA-ATTT-ATTAA-TATAAATT
1 ATTAATAAATATTTAATTAACTATAAA-T
*
22128 ATTAAATAATTATTT
1 ATT-AATAAATATTT
22143 TTTAAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
24 5 0.15
25 9 0.26
26 7 0.21
27 3 0.09
28 10 0.29
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
ATTAATAAATATTTAATTAACTATAAAT
Found at i:22136 original size:12 final size:12
Alignment explanation
Indices: 22102--22169 Score: 50
Period size: 13 Copynumber: 5.6 Consensus size: 12
22092 TAACTATATA
22102 TATT-AATAAATT
1 TATTAAATAAA-T
22114 TATTAATATAAAT
1 TATTAA-ATAAAT
22127 TATTAAAT-AAT
1 TATTAAATAAAT
***
22138 TATTTTTTAAAT
1 TATTAAATAAAT
*
22150 AATTTAAATAAAT
1 TA-TTAAATAAAT
*
22163 TAATAAA
1 TATTAAA
22170 CATAATTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
11 8 0.19
12 14 0.33
13 16 0.37
14 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TATTAAATAAAT
Found at i:22385 original size:16 final size:17
Alignment explanation
Indices: 22364--22423 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 17
22354 AAATATTTTA
22364 ATTAATT-TAATTAATT
1 ATTAATTATAATTAATT
*
22380 ATTAATATTACTAATAAATT
1 ATT-A-ATTA-TAATTAATT
22400 A-TAATTATAATT-ATT
1 ATTAATTATAATTAATT
22415 ATTAATTAT
1 ATTAATTAT
22424 TTTATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 4 0.11
16 14 0.38
17 5 0.14
18 4 0.11
19 1 0.03
20 9 0.24
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTAATTATAATTAATT
Found at i:22417 original size:29 final size:29
Alignment explanation
Indices: 22362--22418 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
22352 TTAAATATTT
* *
22362 TAATTAATTTAATTAATTATTAATATTAC
1 TAATAAATTTAATTAATAATTAATATTAC
*
22391 TAATAAATTATAATT-ATAATTATTATTA
1 TAATAAATT-TAATTAATAATTAATATTA
22419 ATTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
TAATAAATTTAATTAATAATTAATATTAC
Found at i:22460 original size:26 final size:24
Alignment explanation
Indices: 22427--22486 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
22417 TAATTATTTT
22427 ATATAAATAATTAGCATTTGTTT-ATA
1 ATATAAAT-ATTA--ATTTGTTTAATA
*
22453 ATATAAAT-TTAATTTGTTTAATT
1 ATATAAATATTAATTTGTTTAATA
22476 ATATAAATATT
1 ATATAAATATT
22487 TGTTTAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
22 8 0.26
23 10 0.32
24 5 0.16
26 8 0.26
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (24 bp):
ATATAAATATTAATTTGTTTAATA
Found at i:22461 original size:23 final size:21
Alignment explanation
Indices: 22442--22492 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
22432 AATAATTAGC
22442 ATTTGTTTATAATATAAATTTA
1 ATTTGTTTATAATATAAA-TTA
*
22464 ATTTGTTTAATTATATAAA-T-
1 ATTTGTTT-ATAATATAAATTA
22484 ATTTGTTTA
1 ATTTGTTTA
22493 ATTAATAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 8 0.30
21 1 0.04
22 8 0.30
23 9 0.33
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (21 bp):
ATTTGTTTATAATATAAATTA
Found at i:22487 original size:20 final size:21
Alignment explanation
Indices: 22442--22502 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
22432 AATAATTAGC
*
22442 ATTTGTTT-ATAATATAAATTTA
1 ATTTGTTTAATTATATAAA--TA
22464 ATTTGTTTAATTATATAAAT-
1 ATTTGTTTAATTATATAAATA
22484 ATTTGTTTAATTA-ATAAAT
1 ATTTGTTTAATTATATAAAT
22503 TGTTGTTACT
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
19 6 0.16
20 13 0.35
21 1 0.03
22 8 0.22
23 9 0.24
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (21 bp):
ATTTGTTTAATTATATAAATA
Found at i:23496 original size:9 final size:9
Alignment explanation
Indices: 23482--23553 Score: 63
Period size: 9 Copynumber: 8.9 Consensus size: 9
23472 CAATAGTTAT
23482 TAATATTAA
1 TAATATTAA
23491 TAATATTAA
1 TAATATTAA
23500 T-AT-TT-A
1 TAATATTAA
23506 T--TATTAA
1 TAATATTAA
23513 TAATATTAA
1 TAATATTAA
23522 TAATA-T-A
1 TAATATTAA
*
23529 T-TTATTAA
1 TAATATTAA
23537 TAAT-TTAAA
1 TAATATT-AA
23546 TAATATTA
1 TAATATTA
23554 TTAAATAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
5 1 0.02
6 6 0.12
7 7 0.13
8 7 0.13
9 29 0.56
10 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
TAATATTAA
Found at i:23513 original size:22 final size:22
Alignment explanation
Indices: 23485--23566 Score: 98
Period size: 22 Copynumber: 3.7 Consensus size: 22
23475 TAGTTATTAA
*
23485 TATTAATAATATTAATATTTAT
1 TATTAATAATATTAATATATAT
23507 TATTAATAATATTAATAATATATT
1 TATTAATAATATTAAT-ATATA-T
23531 TATTAATAAT-TTAA-ATAATAT
1 TATTAATAATATTAATAT-ATAT
23552 TATTAAATAA-ATTAA
1 TATT-AATAATATTAA
23567 AACTGATTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
21 7 0.13
22 28 0.52
23 8 0.15
24 11 0.20
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTAATAATATTAATATATAT
Found at i:23785 original size:17 final size:17
Alignment explanation
Indices: 23746--23779 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23736 AATTTCGTTT
*
23746 AATTAAAAATTATATTAC
1 AATT-AAAATTATAATAC
23764 AATTAAAATTATAATA
1 AATTAAAATTATAATA
23780 TTATTATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AATTAAAATTATAATAC
Found at i:23790 original size:23 final size:22
Alignment explanation
Indices: 23756--23820 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
23746 AATTAAAAAT
*
23756 TATATTACAATTAAAATTATAA
1 TATATTATAATTAAAATTATAA
* *
23778 TATTATTATAATTTAAATAATAA
1 TA-TATTATAATTAAAATTATAA
*
23801 TATAGTTATTATTAAGAATT
1 TATA-TTATAATTAA-AATT
23821 TATATTTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 4 0.12
23 27 0.79
24 3 0.09
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (22 bp):
TATATTATAATTAAAATTATAA
Found at i:24184 original size:25 final size:26
Alignment explanation
Indices: 24156--24210 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
24146 CTTATAAACT
*
24156 ATATTATATATAATTAATATTT-ATA
1 ATATTATAAATAATTAATATTTAATA
* *
24181 ATATTGTAAATAATTATTATTTAATA
1 ATATTATAAATAATTAATATTTAATA
24207 ATAT
1 ATAT
24211 ATTAATTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
ATATTATAAATAATTAATATTTAATA
Found at i:24229 original size:22 final size:21
Alignment explanation
Indices: 24203--24257 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
24193 ATTATTATTT
*
24203 AATAATATATTAATTTCTAAA
1 AATAATATATTAATTTATAAA
*
24224 ATATAATA-ATATAATTTATTAA
1 A-ATAATATAT-TAATTTATAAA
24246 AATAAT-TATTAA
1 AATAATATATTAA
24258 ATAATATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
20 3 0.10
21 10 0.34
22 16 0.55
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AATAATATATTAATTTATAAA
Found at i:24268 original size:16 final size:15
Alignment explanation
Indices: 24227--24271 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
24217 TTCTAAAATA
24227 TAATAATATAATTTAT
1 TAATAATATAA-TTAT
24243 T-A-AA-ATAATTAT
1 TAATAATATAATTAT
24255 TAAATAATATAATTAT
1 T-AATAATATAATTAT
24271 T
1 T
24272 TAACTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.20
13 4 0.16
14 3 0.12
15 3 0.12
16 10 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATAATATAATTAT
Found at i:24519 original size:15 final size:14
Alignment explanation
Indices: 24501--24542 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
24491 AATTTAATAT
24501 TATATTAATTAATTC
1 TATATTAA-TAATTC
24516 TATATTAATAATT-
1 TATATTAATAATTC
24529 TGATATATAATAAT
1 T-ATAT-TAATAAT
24543 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:24671 original size:20 final size:19
Alignment explanation
Indices: 24627--24697 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
24617 AATAAATTAT
24627 TAATTAATAA-A-ATTTAA
1 TAATTAATAATATATTTAA
*
24644 TATTTTAATAATATATTTAA
1 TA-ATTAATAATATATTTAA
* *
24664 TCAATTAATATTATAATTAA
1 T-AATTAATAATATATTTAA
24684 TTAATTAAT-ATATA
1 -TAATTAATAATATA
24698 ATTATATTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
17 2 0.05
18 7 0.16
19 5 0.11
20 28 0.64
21 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATTAATAATATATTTAA
Found at i:24685 original size:16 final size:16
Alignment explanation
Indices: 24640--24730 Score: 59
Period size: 16 Copynumber: 5.8 Consensus size: 16
24630 TTAATAAAAT
*
24640 TTAATATTTTAA-TAA
1 TTAATATTATAATTAA
*
24655 -T-ATATT-TAATCAA
1 TTAATATTATAATTAA
24668 TTAATATTATAATTAA
1 TTAATATTATAATTAA
24684 TTAATTAATATATAATTATA
1 TTAA-T-AT-TATAATTA-A
* *
24704 TTTAT-TTATAATTTA
1 TTAATATTATAATTAA
24719 -TAATAATTATAA
1 TTAAT-ATTATAA
24731 ATTCTATTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
12 3 0.05
13 7 0.11
14 5 0.08
15 6 0.10
16 23 0.38
17 2 0.03
18 2 0.03
19 9 0.15
20 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAATATTATAATTAA
Found at i:25051 original size:20 final size:20
Alignment explanation
Indices: 25023--25066 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
25013 TATATTTCTT
*
25023 ATTATTATTATATGTT-TAAA
1 ATTAATATTATAT-TTATAAA
25043 ATTAATATTATATTTATAAA
1 ATTAATATTATATTTATAAA
25063 ATTA
1 ATTA
25067 TTAATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTAATATTATATTTATAAA
Found at i:25346 original size:14 final size:14
Alignment explanation
Indices: 25308--25351 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
25298 TTTAACAAAC
25308 ATATTAATATAA-TA
1 ATATTAA-ATAATTA
25322 A-ATT-AAT-ATTA
1 ATATTAAATAATTA
25333 ATATTAAATAATTA
1 ATATTAAATAATTA
25347 ATATT
1 ATATT
25352 TATCTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 1 0.04
11 5 0.19
12 4 0.15
13 6 0.23
14 10 0.38
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATATTAAATAATTA
Found at i:25347 original size:20 final size:19
Alignment explanation
Indices: 25308--25351 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
25298 TTTAACAAAC
25308 ATATTAATATAATAAATTA
1 ATATTAATATAATAAATTA
25327 ATATTAATATTAA-ATAATTA
1 ATATTAATA-TAATA-AATTA
25347 ATATT
1 ATATT
25352 TATCTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTAATATAATAAATTA
Found at i:26599 original size:29 final size:29
Alignment explanation
Indices: 26567--26638 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
26557 TATAACATAT
*
26567 AATAATTAAATAAT-ATTTTTAATGTTACA
1 AATAATTAAATAATAATTATTAAT-TTACA
* * *
26596 AATAATTATATATTAATTATTAATTTATA
1 AATAATTAAATAATAATTATTAATTTACA
26625 AA-AATATAAATAAT
1 AATAAT-TAAATAAT
26639 TTGATATTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 3 0.09
29 24 0.69
30 8 0.23
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
AATAATTAAATAATAATTATTAATTTACA
Found at i:29459 original size:21 final size:21
Alignment explanation
Indices: 29434--29476 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
29424 TGAATTTTTA
29434 GAAAAAGAAAATT-ATGATTT
1 GAAAAAGAAAATTGATGATTT
*
29454 GAAAAAGAAATTTGATGATTT
1 GAAAAAGAAAATTGATGATTT
29475 GA
1 GA
29477 TGAATGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (21 bp):
GAAAAAGAAAATTGATGATTT
Found at i:30473 original size:141 final size:141
Alignment explanation
Indices: 30156--30478 Score: 535
Period size: 141 Copynumber: 2.3 Consensus size: 141
30146 TCTTGATTTG
*
30156 TGAATTGATGAACATCTTGTGCTTAAATCATATATAATGATGTTTGATTGTTCATCTCTTGACTT
1 TGAATTGATGAACATCTTGTGCTTAAATCATATATATTGATGTTTGATTGTTCATCTCTTGACTT
* *
30221 CTTATGAAATAATCTTGAAATATGTTTTAATCTTTTATTCTTATTAATTCAAGATTTATTTCTTC
66 CTTATGAAATAATCTTGAAATATGCTTTAATCTATTATTCTTATTAATTCAAGATTTATTTCTTC
30286 TCTTGTGTTGA
131 TCTTGTGTTGA
* *
30297 TGAATTGATAAACATCTTGTGCTTAAATCATATATATTGATGTTTGATTGTTCATCTCTTGATTT
1 TGAATTGATGAACATCTTGTGCTTAAATCATATATATTGATGTTTGATTGTTCATCTCTTGACTT
*
30362 CTTATGAAATAGTCTTGAAATATGCTTTAAT-TAATTATTCTTATTAATTCAAGATTTATTTCTT
66 CTTATGAAATAATCTTGAAATATGCTTTAATCT-ATTATTCTTATTAATTCAAGATTTATTTCTT
30426 CTCTTGTGTTGA
130 CTCTTGTGTTGA
*
30438 TGAATTGATGAACAT-TATGTGCTTAAATGGA-ATATATTGAT
1 TGAATTGATGAACATCT-TGTGCTTAAAT-CATATATATTGAT
30479 TCTTGGTTCA
Statistics
Matches: 171, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
140 2 0.01
141 168 0.98
142 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.48
Consensus pattern (141 bp):
TGAATTGATGAACATCTTGTGCTTAAATCATATATATTGATGTTTGATTGTTCATCTCTTGACTT
CTTATGAAATAATCTTGAAATATGCTTTAATCTATTATTCTTATTAATTCAAGATTTATTTCTTC
TCTTGTGTTGA
Found at i:32435 original size:177 final size:176
Alignment explanation
Indices: 31521--32465 Score: 695
Period size: 175 Copynumber: 5.3 Consensus size: 176
31511 AAGATATGAA
* * * * *
31521 TATTCACACAAGTTTATTTGGAATAAAATAATACTAATTTATTATTATTCTAAAAATTAATAAGT
1 TATTCATACAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG-
** * * * * * * * **
31586 TAGAGATTTAAAAAATAAATCGGTTTACCGAATAAGTTTAAATAGTCATGTCCATTTAAATTGTT
65 -A-AGATTT-AAAAATAAATCTATTTACTGAAT-AGTTCAAATAATTATGACTATTTGAATAATT
* * * * * * * *
31651 TTTTATTTCAAATTGTTATGACATTTTGTTTTATTATAAAATAATTGTTTC
126 ATCTATTTCAAATTATTATGACCTTTTGTTTTATCATAAAACAATTATTTT
** * * *
31702 TATTCATACAAAATTATTC-AGAATAAAATAATACCAATTTATTACTATTTCAAAAATTAATAAG
1 TATTCATACAAGTTTATTCGA-AATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG
* * ** * * * **
31766 --GATTTAAAAATAAATGTGTTTTTTGAAGCAATTC-AATAATTAAGACTATTAAAATAATTATC
65 AAGATTTAAAAATAAATCTATTTACTGAA-TAGTTCAAATAATTATGACTATTTGAATAATTATC
* * * *
31828 TATTCCAAATTATTTTGATCTTTTG-TTTAGT-A-AAAA-AATAATTCTT
129 TATTTCAAATTATTATGACCTTTTGTTTTA-TCATAAAACAATTATT-TT
* * * * * * *
31874 TCAGTTCATACATGCTTATTCAAAATATAGTAGTACTAATTTATTAA-AATTTAGAAAATTAATA
1 T-A-TTCATACAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTTA-AAAATTAATA
* *
31938 AGAA-ATTTTAAAA-AAATCTATTTA-TCGAATAAGTTCAAATAATTATGACTATTTGAACAATT
63 AGAAGATTTAAAAATAAATCTATTTACT-GAAT-AGTTCAAATAATTATGACTATTTGAATAATT
* * * * * *
32000 ATCTATTTAAAATCATTATGGCCTTTTATTTTATCATAAAACAACT-GTTT
126 ATCTATTTCAAATTATTATGACCTTTTGTTTTATCATAAAACAATTATTTT
* * * * ** * *
32050 TAGTACATAAAAGTTT-TTCCAAAATAAAATAATATTGCTTTATTAATATTTCAAAAATTAAGAA
1 TA-TTCATACAAGTTTATT-CGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAA
* * * * * * *
32114 GTTGGAGTTTTAAAAAATAAATC-AGTTTATTAAATTA-TTTAAATAATTATGTCCATTTGAATA
64 ---GAAGATTT-AAAAATAAATCTA-TTTACTGAA-TAGTTCAAATAATTATGACTATTTGAATA
* * * *
32177 ATTATCTATTTCAAATTGTTATGAACTTTTGTTTTGTCATAAAACAATTGTTTT
123 ATTATCTATTTCAAATTATTATGACCTTTTGTTTTATCATAAAACAATTATTTT
** * * *
32231 TCA-TCATACAAGCCTATTTGGAATAAAATAATACTAATTTACTAATATTTTAAAAATTAATAA-
1 T-ATTCATACAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAG
* * * *
32294 AAGATTTAAAAAGTTAATCTATTTACTGAACTAGTTCAAATAGTTATAACTATTTGAACAATTAT
65 AAGATTTAAAAA-TAAATCTATTTACTGAA-TAGTTCAAATAATTATGACTATTTGAATAATTAT
* * * *
32359 ATATTTCAAATTATTATAACCTTTTGTTATCTCATAAAACAATTATTTT
128 CTATTTCAAATTATTATGACCTTTTGTTTTATCATAAAACAATTATTTT
* * * *
32408 TATTCACACAAGTTTATTCGAAATAAAAT-ATACTAATATAATAATATTTTGAAAATTA
1 TATTCATACAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTA
32466 GTAACTAAGA
Statistics
Matches: 594, Mismatches: 135, Indels: 75
0.74 0.17 0.09
Matches are distributed among these distances:
171 5 0.01
172 6 0.01
173 11 0.02
174 101 0.17
175 119 0.20
176 63 0.11
177 95 0.16
178 4 0.01
179 3 0.01
180 112 0.19
181 72 0.12
182 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (176 bp):
TATTCATACAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGA
AGATTTAAAAATAAATCTATTTACTGAATAGTTCAAATAATTATGACTATTTGAATAATTATCTA
TTTCAAATTATTATGACCTTTTGTTTTATCATAAAACAATTATTTT
Found at i:32512 original size:16 final size:16
Alignment explanation
Indices: 32486--32537 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 16
32476 GATTTAAAAA
32486 ATAACATATAATTATAT
1 ATAA-ATATAATTATAT
*
32503 ATAAATATAATGATA-
1 ATAAATATAATTATAT
32518 ATATAATATATATTATAT
1 ATA-AATATA-ATTATAT
32536 AT
1 AT
32538 TACTATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 3 0.10
16 16 0.53
17 9 0.30
18 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
ATAAATATAATTATAT
Found at i:33211 original size:21 final size:21
Alignment explanation
Indices: 33187--33246 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
33177 TAATTATACC
*
33187 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
* *
33208 TAAT-CTGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
*
33230 TAATATT-ATTTTATTAT
1 TAATATTGATATTATTAT
33247 AATATAGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 6 0.20
21 13 0.43
22 10 0.33
23 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:34469 original size:21 final size:21
Alignment explanation
Indices: 34445--34485 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34435 GTTTTGTTAT
* *
34445 ATAATATTTTAATATAATTAG
1 ATAATAATTAAATATAATTAG
34466 ATAATAATTAAATATAATTA
1 ATAATAATTAAATATAATTA
34486 AATTAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
ATAATAATTAAATATAATTAG
Found at i:34484 original size:10 final size:10
Alignment explanation
Indices: 34455--34488 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
34445 ATAATATTTT
34455 AATATAATTA
1 AATATAATTA
*
34465 GATAATAATTA
1 AAT-ATAATTA
34476 AATATAATTA
1 AATATAATTA
34486 AAT
1 AAT
34489 TAAATATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (10 bp):
AATATAATTA
Done.