Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171922
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
File 2 of 5
Found at i:34710 original size:45 final size:46
Alignment explanation
Indices: 34662--34840 Score: 179
Period size: 45 Copynumber: 3.8 Consensus size: 46
34652 AGTATTGTGA
34662 TATTATATTAATTATTAATTAT-ATCTATTTAAATTTACTTTTATATAT
1 TATTAT-TTAA-T-TTAATTATAATCTATTTAAATTTACTTTTATATAT
* * * *
34710 TATTATTTAATTTAAATATAATC-AGTTAAATTTA-TAATATAAATTTAT
1 TATTATTTAATTTAATTATAATCTATTTAAATTTACT--T-T-TATATAT
34758 ATATTATATTAATTATTAATTAT-ATCTATTTAAATTTACTTTTATATAT
1 -TATTAT-TTAA-T-TTAATTATAATCTATTTAAATTTACTTTTATATAT
*
34807 TATTATTTAATTTAATTATAATC-AGTTAAATTTA
1 TATTATTTAATTTAATTATAATCTATTTAAATTTA
34841 TAATATAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 27
0.75 0.06 0.18
Matches are distributed among these distances:
44 1 0.01
45 35 0.32
46 9 0.08
47 9 0.08
48 17 0.15
49 11 0.10
50 5 0.05
51 5 0.05
52 17 0.15
53 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (46 bp):
TATTATTTAATTTAATTATAATCTATTTAAATTTACTTTTATATAT
Found at i:34760 original size:52 final size:52
Alignment explanation
Indices: 34701--34860 Score: 185
Period size: 52 Copynumber: 3.2 Consensus size: 52
34691 TAAATTTACT
34701 TTTATATATTATTATTTAATTTAAATATAATCAGTTAAATTTATAATATAAA
1 TTTATATATTATTATTTAATTTAAATATAATCAGTTAAATTTATAATATAAA
* * **
34753 TTTATATATTA-TA-TTAATTATTAAT-T-AT-A-TCT--ATTTA-AATTTACT
1 TTTATATATTATTATTTAATT-TAAATATAATCAGT-TAAATTTATAATATAAA
*
34798 TTTATATATTATTATTTAATTTAATTATAATCAGTTAAATTTATAATATAAA
1 TTTATATATTATTATTTAATTTAAATATAATCAGTTAAATTTATAATATAAA
34850 TTTATTATATT
1 TTTA-TATATT
34861 TTAAATAAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
45 16 0.18
46 10 0.11
47 8 0.09
48 4 0.05
49 4 0.05
50 8 0.09
51 11 0.13
52 20 0.23
53 6 0.07
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (52 bp):
TTTATATATTATTATTTAATTTAAATATAATCAGTTAAATTTATAATATAAA
Found at i:34764 original size:97 final size:98
Alignment explanation
Indices: 34661--34860 Score: 384
Period size: 97 Copynumber: 2.1 Consensus size: 98
34651 TAGTATTGTG
34661 ATATTATATTAATTATTAATTATATCTATTTAAATTTACTTTTATATATTATTATTTAATTTAAA
1 ATATTATATTAATTATTAATTATATCTATTTAAATTTACTTTTATATATTATTATTTAATTTAAA
34726 TATAATCAGTTAAATTTATAATATAAATTTA-T
66 TATAATCAGTTAAATTTATAATATAAATTTATT
*
34758 ATATTATATTAATTATTAATTATATCTATTTAAATTTACTTTTATATATTATTATTTAATTTAAT
1 ATATTATATTAATTATTAATTATATCTATTTAAATTTACTTTTATATATTATTATTTAATTTAAA
34823 TATAATCAGTTAAATTTATAATATAAATTTATT
66 TATAATCAGTTAAATTTATAATATAAATTTATT
34856 ATATT
1 ATATT
34861 TTAAATAAAA
Statistics
Matches: 101, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 95 0.94
98 6 0.06
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (98 bp):
ATATTATATTAATTATTAATTATATCTATTTAAATTTACTTTTATATATTATTATTTAATTTAAA
TATAATCAGTTAAATTTATAATATAAATTTATT
Found at i:34855 original size:45 final size:45
Alignment explanation
Indices: 34709--34857 Score: 158
Period size: 45 Copynumber: 3.2 Consensus size: 45
34699 CTTTTATATA
*
34709 TTATTATTTAATTTAAATATAATCAGTTAAATTTATAATATAAATTT
1 TTATTATTTAATTTAATTATAATCAGTTAAATTTATAATATAAA--T
* ** *
34756 ATATATTATATTAATTATTAATTAT-ATCTATTTAAATTTACTTTTATATA-
1 -T-TATTAT-TTAA-T-TTAATTATAATC-AGTTAAATTTA-TAATATAAAT
34806 TTATTATTTAATTTAATTATAATCAGTTAAATTTATAATATAAAT
1 TTATTATTTAATTTAATTATAATCAGTTAAATTTATAATATAAAT
34851 TTATTAT
1 TTATTAT
34858 ATTTTAAATA
Statistics
Matches: 84, Mismatches: 9, Indels: 19
0.75 0.08 0.17
Matches are distributed among these distances:
44 6 0.07
45 25 0.30
46 4 0.05
47 4 0.05
48 7 0.08
49 7 0.08
50 4 0.05
51 4 0.05
52 17 0.20
53 6 0.07
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (45 bp):
TTATTATTTAATTTAATTATAATCAGTTAAATTTATAATATAAAT
Found at i:35462 original size:10 final size:10
Alignment explanation
Indices: 35449--35494 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
35439 TTGTTATTTT
35449 ATAATAATTA
1 ATAATAATTA
35459 ATAATAAATT-
1 ATAAT-AATTA
*
35469 ATATTAAATTA
1 ATAAT-AATTA
35480 ATAATAA-TA
1 ATAATAATTA
35489 ATAATA
1 ATAATA
35495 GCTTATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 8 0.25
10 16 0.50
11 8 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATAATTA
Found at i:35486 original size:31 final size:31
Alignment explanation
Indices: 35449--35509 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
35439 TTGTTATTTT
35449 ATAATAATTAATAATAAATTA-TATTAAATTA
1 ATAATAA-TAATAATAAATTATTATTAAATTA
**
35480 ATAATAATAATAATAGCTTATTATTAAATT
1 ATAATAATAATAATAAATTATTATTAAATT
35510 TTATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (31 bp):
ATAATAATAATAATAAATTATTATTAAATTA
Found at i:36013 original size:20 final size:20
Alignment explanation
Indices: 35990--36042 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 20
35980 TATTAATAGT
*
35990 AATTATTAATATTTATGATA
1 AATTATTAATATTTATAATA
36010 AATTA--AA-ATTTATAATA
1 AATTATTAATATTTATAATA
*
36027 AATAATTAATATTTAT
1 AATTATTAATATTTAT
36043 TATTAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 13 0.46
18 2 0.07
19 2 0.07
20 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AATTATTAATATTTATAATA
Found at i:36050 original size:20 final size:20
Alignment explanation
Indices: 35989--36058 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
35979 ATATTAATAG
* *
35989 TAATTATTAATATTTATGA-
1 TAATAATTAATATTTATAAT
*
36008 T-A-AATTAAAATTTATAAT
1 TAATAATTAATATTTATAAT
* *
36026 AAATAATTAATATTTATTAT
1 TAATAATTAATATTTATAAT
*
36046 TAATAAGTAATAT
1 TAATAATTAATAT
36059 AAATAAATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
17 12 0.30
18 1 0.03
19 2 0.05
20 25 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATAATTAATATTTATAAT
Found at i:36185 original size:20 final size:19
Alignment explanation
Indices: 36162--36216 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
36152 TAATATTATT
*
36162 ATAATTATTATAATATTTAG
1 ATAATTATTATAATAATT-G
36182 ATAATTTATTCAT-ATAATTG
1 ATAA-TTATT-ATAATAATTG
36202 ATAATTATTA-AATAA
1 ATAATTATTATAATAA
36217 CTAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.16
19 5 0.16
20 9 0.29
21 10 0.32
22 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (19 bp):
ATAATTATTATAATAATTG
Found at i:36407 original size:26 final size:24
Alignment explanation
Indices: 36375--36436 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 24
36365 ATTAGTTTAC
36375 TAATAATAAATTATAGAATAATATTA
1 TAATAATAAATTATA-AATAA-ATTA
36401 TAATAAT-AA-T-TAAATAAATTA
1 TAATAATAAATTATAAATAAATTA
*
36422 TATTAATATAATTAT
1 TAATAATA-AATTAT
36437 TTATTGACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
21 10 0.32
22 5 0.16
23 4 0.13
24 2 0.06
25 3 0.10
26 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
TAATAATAAATTATAAATAAATTA
Found at i:36682 original size:23 final size:23
Alignment explanation
Indices: 36656--36721 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 23
36646 AAATATATCA
*
36656 TATATATAATTATAATTTAAAAT
1 TATATATAATTATAAATTAAAAT
* *
36679 TATATA-ATATTA-ACAATTATATT
1 TATATATA-ATTATA-AATTAAAAT
*
36702 TATATATAATTATAAGTTAA
1 TATATATAATTATAAATTAA
36722 TTAATTAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
22 2 0.06
23 30 0.88
24 2 0.06
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TATATATAATTATAAATTAAAAT
Found at i:36686 original size:15 final size:17
Alignment explanation
Indices: 36666--36700 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
36656 TATATATAAT
36666 TATAAT-TTAA-AATTA
1 TATAATATTAACAATTA
36681 TATAATATTAACAATTA
1 TATAATATTAACAATTA
36698 TAT
1 TAT
36701 TTATATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 4 0.22
17 8 0.44
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TATAATATTAACAATTA
Found at i:36969 original size:41 final size:41
Alignment explanation
Indices: 36924--37002 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 41
36914 TTTAGATTAT
*
36924 ATTAATATTAAA-TATAATTATAAATTATA-AATTATAATTTG
1 ATTAATAATAAATTA-AATTATAAATTATATAA-TATAATTTG
* *
36965 ATTAATAATAAATTAAATTGTTAATTATATAATATAAT
1 ATTAATAATAAATTAAATTATAAATTATATAATATAAT
37003 AATTGTTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 29 0.88
42 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.46
Consensus pattern (41 bp):
ATTAATAATAAATTAAATTATAAATTATATAATATAATTTG
Found at i:37026 original size:22 final size:20
Alignment explanation
Indices: 36932--37027 Score: 88
Period size: 22 Copynumber: 4.5 Consensus size: 20
36922 ATATTAATAT
* *
36932 TAAA-TATAATTATAAATTA
1 TAAATTATAATTGTTAATTA
*
36951 TAAATTATAATTTGATTAATAA
1 TAAATTATAA-TTG-TTAATTA
36973 TAAATTA-AATTGTTAATTA
1 TAAATTATAATTGTTAATTA
36992 TATAATATAATAATTGTTATATTA
1 TA-AAT-T-ATAATTGTTA-ATTA
37016 TAAATTTATAAT
1 TAAA-TTATAAT
37028 CTTAATTAAC
Statistics
Matches: 64, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
19 12 0.19
20 11 0.17
21 5 0.08
22 18 0.28
23 11 0.17
24 7 0.11
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAAATTATAATTGTTAATTA
Found at i:37563 original size:30 final size:32
Alignment explanation
Indices: 37479--37563 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 32
37469 TTATAATTTC
*
37479 AATATATTAATAATAAACTTACTATTTAATTATAT
1 AATATAATAATAAT-AA-TTA-TATTTAATTATAT
*
37514 AAT-TAA-ATATATTATATTATATTT-A-TATAT
1 AATATAATA-ATAATA-ATTATATTTAATTATAT
37544 AATATAATAATAATAATTAT
1 AATATAATAATAATAATTAT
37564 TTGAACTGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
30 13 0.30
31 9 0.21
32 6 0.14
33 5 0.12
34 7 0.16
35 3 0.07
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (32 bp):
AATATAATAATAATAATTATATTTAATTATAT
Found at i:37705 original size:19 final size:19
Alignment explanation
Indices: 37683--37763 Score: 58
Period size: 19 Copynumber: 4.2 Consensus size: 19
37673 ATTAGTAAAC
*
37683 AATTAATTAATTATATTAT
1 AATTAAATAATTATATTAT
** * *
37702 AATTCCATAACTATTTTAT
1 AATTAAATAATTATATTAT
* *
37721 AATTTAAT-ATTAAATTAT
1 AATTAAATAATTATATTAT
37739 -ATTAAATATAATTAATATTAT
1 AATT-AA-ATAATT-ATATTAT
37760 AATT
1 AATT
37764 TTACTAATTA
Statistics
Matches: 45, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
17 3 0.07
18 8 0.18
19 22 0.49
20 3 0.07
21 6 0.13
22 3 0.07
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTAAATAATTATATTAT
Found at i:37771 original size:21 final size:21
Alignment explanation
Indices: 37747--37788 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
37737 ATATTAAATA
37747 TAATT-AATATTATAATTTTAC
1 TAATTAAATATTAT-ATTTTAC
37768 TAATTAAAATATTATATTTTA
1 TAATT-AAATATTATATTTTA
37789 TGCATTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
23 8 0.42
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TAATTAAATATTATATTTTAC
Found at i:37795 original size:22 final size:23
Alignment explanation
Indices: 37752--37807 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
37742 AAATATAATT
37752 AATATTATAATTTTACTAATTA-A
1 AATATTAT-ATTTTACTAATTATA
*
37775 AATATTATATTTTA-TGCATTATA
1 AATATTATATTTTACT-AATTATA
37798 ATATATTATA
1 A-ATATTATA
37808 AGAATTTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 10 0.34
23 10 0.34
24 8 0.28
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (23 bp):
AATATTATATTTTACTAATTATA
Found at i:37804 original size:19 final size:19
Alignment explanation
Indices: 37778--37827 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
37768 TAATTAAAAT
* *
37778 ATTATATTTTATGCATTATA
1 ATTATATTTTAAGAATT-TA
*
37798 A-TATATTATAAGAATTTA
1 ATTATATTTTAAGAATTTA
37816 ATTATATTTTAA
1 ATTATATTTTAA
37828 TATAATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 3 0.12
19 21 0.84
20 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (19 bp):
ATTATATTTTAAGAATTTA
Found at i:37998 original size:27 final size:27
Alignment explanation
Indices: 37967--38018 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
37957 ACTTAAATTA
*
37967 ATATACTTA-TAAATTAGTATATTATAT
1 ATATAATTAGTAAATTA-TATATTATAT
*
37994 ATATAATTAGTATATTATATATTAT
1 ATATAATTAGTAAATTATATATTAT
38019 TATTTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (27 bp):
ATATAATTAGTAAATTATATATTATAT
Found at i:38017 original size:15 final size:15
Alignment explanation
Indices: 37979--38049 Score: 53
Period size: 15 Copynumber: 4.7 Consensus size: 15
37969 ATACTTATAA
37979 ATTAGTATATTA-TAT
1 ATTA-TATATTAGTAT
37994 A-TATA-ATTAGTAT
1 ATTATATATTAGTAT
*
38007 ATTATATATTATTAT
1 ATTATATATTAGTAT
38022 -TTATGATATTGAGTA-
1 ATTAT-ATATT-AGTAT
38037 ATCTAATATATTA
1 AT-T-ATATATTA
38050 CTCAATGTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
12 4 0.09
13 6 0.13
14 10 0.22
15 13 0.28
16 5 0.11
17 6 0.13
18 2 0.04
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (15 bp):
ATTATATATTAGTAT
Found at i:38031 original size:22 final size:20
Alignment explanation
Indices: 37974--38015 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
37964 TTAATATACT
37974 TATA-AATTAGTATATTATA
1 TATATAATTAGTATATTATA
37993 TATATAATTAGTATATTATA
1 TATATAATTAGTATATTATA
38013 TAT
1 TAT
38016 TATTATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TATATAATTAGTATATTATA
Found at i:38149 original size:6 final size:6
Alignment explanation
Indices: 38140--38284 Score: 56
Period size: 6 Copynumber: 23.3 Consensus size: 6
38130 CTGTTACTAT
* *
38140 ATTATA ATTATA TAGTATA A-T-TA A-TATTA ATTATTA ATTTACA ATTATA
1 ATTATA ATTATA -ATTATA ATTATA ATTA-TA ATTA-TA A-TTATA ATTATA
* *
38189 ATTAT- ATTAATA TTTTATTA AATACTA ATTAT- -TTAATAA ATTTATA
1 ATTATA ATT-ATA -ATTA-TA ATTA-TA ATTATA ATT-AT-A A-TTATA
*
38235 A--ATA ATTATA ATTAATA ATAATA TATTATA ATTATTA A-TATA ATTATA
1 ATTATA ATTATA ATT-ATA ATTATA -ATTATA ATTA-TA ATTATA ATTATA
38283 AT
1 AT
38285 ATTCGATTAT
Statistics
Matches: 109, Mismatches: 10, Indels: 40
0.69 0.06 0.25
Matches are distributed among these distances:
4 10 0.09
5 9 0.08
6 43 0.39
7 36 0.33
8 9 0.08
9 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (6 bp):
ATTATA
Found at i:38158 original size:13 final size:12
Alignment explanation
Indices: 38137--38286 Score: 56
Period size: 11 Copynumber: 12.8 Consensus size: 12
38127 TTACTGTTAC
38137 TATAT-TATAAT
1 TATATATATAAT
38148 TATATAGTATAAT
1 TATATA-TATAAT
38161 TA-ATAT-TAAT
1 TATATATATAAT
* *
38171 TATTAATTTACAAT
1 TA-T-ATATATAAT
38185 TATA-AT-TATAT
1 TATATATATA-AT
* *
38196 TA-ATATTTTAT
1 TATATATATAAT
38207 TA-A-ATACTAAT
1 TATATATA-TAAT
*
38218 TATTTA-ATAAAT
1 TATATATAT-AAT
*
38230 T-TATAAATAAT
1 TATATATATAAT
38241 TATA-ATTAATAAT
1 TATATA-T-ATAAT
*
38254 AATATATTATAAT
1 TATATA-TATAAT
38267 TAT-TAATATAAT
1 TATAT-ATATAAT
38279 TATA-ATAT
1 TATATATAT
38287 TCGATTATTA
Statistics
Matches: 107, Mismatches: 12, Indels: 40
0.67 0.08 0.25
Matches are distributed among these distances:
10 10 0.09
11 36 0.34
12 24 0.22
13 29 0.27
14 8 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (12 bp):
TATATATATAAT
Found at i:38193 original size:43 final size:47
Alignment explanation
Indices: 38097--38195 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 47
38087 TTAAATTATA
*
38097 ATAATT-TATATACAATTAATATTAACAATATTACTGTTACTATATT
1 ATAATTATATATACAATTAATATTAACAATATTAATGTTACTATATT
* *
38143 ATAATTATATAGTATAATTAATATT-A-ATTATTAAT-TTAC-A-ATT
1 ATAATTATATA-TACAATTAATATTAACAATATTAATGTTACTATATT
38186 ATAATTATAT
1 ATAATTATAT
38196 TAATATTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 13 0.27
44 1 0.02
45 4 0.08
46 13 0.27
47 5 0.10
48 12 0.25
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (47 bp):
ATAATTATATATACAATTAATATTAACAATATTAATGTTACTATATT
Found at i:38232 original size:27 final size:26
Alignment explanation
Indices: 38165--38253 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 26
38155 TATAATTAAT
* * *
38165 ATTA-ATTATTAATTTACAATTA-TA
1 ATTATATTAATAATTTATAAATACTA
*
38189 ATTATATTAATATTTTATTAAATACTA
1 ATTATATTAATAATTTA-TAAATACTA
38216 ATTAT-TTAATAAATTTAT-AA-A-TA
1 ATTATATTAAT-AATTTATAAATACTA
38239 ATTATAATTAATAAT
1 ATTAT-ATTAATAAT
38254 AATATATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
23 7 0.13
24 8 0.15
25 17 0.31
26 10 0.19
27 12 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTATATTAATAATTTATAAATACTA
Found at i:38236 original size:26 final size:27
Alignment explanation
Indices: 38187--38253 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
38177 TTTACAATTA
*
38187 TAATTATATTAATATTTTATTAAATAC
1 TAATTATATTAATAATTTATTAAATAC
38214 TAATTAT-TTAATAAATTTA-T-AA-A-
1 TAATTATATTAAT-AATTTATTAAATAC
38237 TAATTATAATTAATAAT
1 TAATTAT-ATTAATAAT
38254 AATATATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
23 7 0.19
24 4 0.11
25 7 0.19
26 6 0.17
27 12 0.33
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (27 bp):
TAATTATATTAATAATTTATTAAATAC
Found at i:38262 original size:20 final size:19
Alignment explanation
Indices: 38235--38284 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
38225 TAAATTTATA
38235 AATAATTATAATTAATAAT
1 AATAATTATAATTAATAAT
*
38254 AATATATTATAATTATTAAT
1 AATA-ATTATAATTAATAAT
38274 -ATAATTATAAT
1 AATAATTATAAT
38285 ATTCGATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 8 0.28
19 7 0.24
20 14 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATAATTATAATTAATAAT
Found at i:38504 original size:23 final size:24
Alignment explanation
Indices: 38462--38510 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
38452 TATTTTATAG
*
38462 TATATTATAAAAATAGATTATATT
1 TATATTATAAAAATAAATTATATT
*
38486 TATATTAT-AATATAAATTATATT
1 TATATTATAAAAATAAATTATATT
38509 TA
1 TA
38511 CTTTATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TATATTATAAAAATAAATTATATT
Found at i:38965 original size:26 final size:24
Alignment explanation
Indices: 38912--38965 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
38902 GGTATATTTT
* *
38912 ATTATATAATATAATAAAATTAAT
1 ATTATAAAATATAATAAAATTAAC
38936 ATTATAAAATATTAA-ATAAATATAAC
1 ATTATAAAATA-TAATA-AAAT-TAAC
38962 ATTA
1 ATTA
38966 GATAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 11 0.44
25 7 0.28
26 7 0.28
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
ATTATAAAATATAATAAAATTAAC
Found at i:40809 original size:16 final size:16
Alignment explanation
Indices: 40788--40835 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
40778 ATTAATATTT
40788 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
*
40805 T-TAATATTATTATAA
1 TATAATATTATAATAA
40820 TATAATAATTATAATA
1 TATAAT-ATTATAATA
40836 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:40842 original size:25 final size:26
Alignment explanation
Indices: 40778--40847 Score: 90
Period size: 25 Copynumber: 2.7 Consensus size: 26
40768 AATTTATTAT
*
40778 ATTAATA-TTTTATAATATTACTAATA
1 ATTAATATTTTTATAATA-TAATAATA
* *
40804 ATTAATATTATTATAATATAATAATT
1 ATTAATATTTTTATAATATAATAATA
40830 A-TAATATTTTTATAATAT
1 ATTAATATTTTTATAATAT
40848 TAGTAATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
25 16 0.41
26 14 0.36
27 9 0.23
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTAATATTTTTATAATATAATAATA
Found at i:41176 original size:19 final size:18
Alignment explanation
Indices: 41152--41189 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
41142 TGTTTGAAAT
41152 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
41171 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
41189 A
1 A
41190 GAAAATAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:41695 original size:14 final size:14
Alignment explanation
Indices: 41678--41704 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
41668 TCTATTTATA
41678 TATTATATTTATTG
1 TATTATATTTATTG
41692 TATTATATTTATT
1 TATTATATTTATT
41705 AAATAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TATTATATTTATTG
Found at i:41739 original size:13 final size:14
Alignment explanation
Indices: 41714--41742 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
41704 TAAATAATTA
41714 AAATTAATATTAAT
1 AAATTAATATTAAT
41728 AAATTAAT-TTAAT
1 AAATTAATATTAAT
41741 AA
1 AA
41743 GAATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTAATATTAAT
Found at i:41915 original size:17 final size:18
Alignment explanation
Indices: 41871--41926 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
41861 TTAGATTACT
*
41871 TTATTAATATATAATATAA
1 TTATTAATAAATAAT-TAA
41890 -TATTAAT-AATAGATTAA
1 TTATTAATAAATA-ATTAA
41907 TTATT-ATAAATAATTAA
1 TTATTAATAAATAATTAA
41924 TTA
1 TTA
41927 CAATTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TTATTAATAAATAATTAA
Found at i:42091 original size:20 final size:20
Alignment explanation
Indices: 42068--42125 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 20
42058 AATTTATCCT
42068 TTATTATATCT-TATTAATAA
1 TTATTATAT-TATATTAATAA
*
42088 TTATTATATTATATTAA-AC
1 TTATTATATTATATTAATAA
42107 TTACTTATATTATATTAAT
1 TTA-TTATATTATATTAAT
42126 TTAATTAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
19 5 0.15
20 29 0.85
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTATATTATATTAATAA
Found at i:42167 original size:21 final size:21
Alignment explanation
Indices: 42143--42183 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
42133 ATTAATATTA
42143 AATATTAAAATAAATAAATAG
1 AATATTAAAATAAATAAATAG
* *
42164 AATATTTAAATAATTAAATA
1 AATATTAAAATAAATAAATA
42184 ATATTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AATATTAAAATAAATAAATAG
Found at i:43930 original size:13 final size:14
Alignment explanation
Indices: 43913--43945 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
43903 ATATTTATTA
*
43913 AATTTAAGTATAAT
1 AATTTAACTATAAT
43927 -ATTTAACTATAAT
1 AATTTAACTATAAT
43940 AATTTA
1 AATTTA
43946 TTAAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (14 bp):
AATTTAACTATAAT
Found at i:44664 original size:147 final size:146
Alignment explanation
Indices: 44398--44688 Score: 343
Period size: 147 Copynumber: 2.0 Consensus size: 146
44388 TAAATAGTTG
* *
44398 TAACTATTTGCATTTGTTCGATAAACAAATTTATTTTTTAAAACTCTTGCTTATTAACTTTCAAA
1 TAACTATTTGAACTTGTTCGATAAACAAATTTATTTTTTAAAACTCTTGCTTATTAACTTTCAAA
* * * * * * *
44463 ATATTAAGAAATTAGTATTATTTTATTTTAAATAAGCTTTTATGAATTGAAACAATTATTTTAAG
66 ATATTAAGAAATTAGGATTATTTTATTCTAAATAAACTTGTAAGAATTGAAACAAGTATTTGAAG
*
44528 TCAAAACAAAAGGTCA
131 ACAAAACAAAAGGTCA
* * * **
44544 TAACTATTTGAACTTGTTCGGTAAACAAATTTATTTTTTCAAATA-TTTTGCTTATTAATTTTTT
1 TAACTATTTGAACTTGTTCGATAAACAAATTTATTTTTT-AAA-ACTCTTGCTTATTAACTTTCA
* * * * *
44608 TAATGTTAATAAATTTGGATTATTTTGTTCTAAATAAACTTGTAAG-ATATGAAACAAGTATTTG
64 AAATATTAAGAAATTAGGATTATTTTATTCTAAATAAACTTGTAAGAAT-TGAAACAAGTATTTG
* *
44672 ATGACTAAACAAAAGGT
128 AAGACAAAACAAAAGGT
44689 AAGAACAATA
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
146 38 0.32
147 81 0.68
148 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (146 bp):
TAACTATTTGAACTTGTTCGATAAACAAATTTATTTTTTAAAACTCTTGCTTATTAACTTTCAAA
ATATTAAGAAATTAGGATTATTTTATTCTAAATAAACTTGTAAGAATTGAAACAAGTATTTGAAG
ACAAAACAAAAGGTCA
Found at i:46368 original size:24 final size:23
Alignment explanation
Indices: 46327--46396 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
46317 TTATAATTGA
*
46327 TTAAAC-AATTAT-ACTAATAAT
1 TTAAACTAATTATAAATAATAAT
*
46348 TTATAACTATTTATAAATAATTAAT
1 TTA-AACTAATTATAAATAA-TAAT
* *
46373 TTAAAGTAATTATAATTAATAAT
1 TTAAACTAATTATAAATAATAAT
46396 T
1 T
46397 GTATTAATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 3 0.08
22 3 0.08
23 10 0.25
24 17 0.43
25 7 0.17
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (23 bp):
TTAAACTAATTATAAATAATAAT
Found at i:47765 original size:13 final size:13
Alignment explanation
Indices: 47718--47766 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
47708 TTTAAAATAT
47718 ATAAATATTTTAA
1 ATAAATATTTTAA
* *
47731 ATAGAGATTATTAA
1 ATAAATATT-TTAA
*
47745 CT-AATATTTTAA
1 ATAAATATTTTAA
47757 ATAAATATTT
1 ATAAATATTT
47767 GTATTTAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
12 5 0.18
13 18 0.64
14 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (13 bp):
ATAAATATTTTAA
Found at i:48158 original size:22 final size:22
Alignment explanation
Indices: 48110--48158 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
48100 TAAATCATTT
48110 TAATTATTTAATATTAAAATTA
1 TAATTATTTAATATTAAAATTA
* *
48132 AAATTATTTAAT-TTAATTATTA
1 TAATTATTTAATATTAA-AATTA
48154 TAATT
1 TAATT
48159 TTAGATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TAATTATTTAATATTAAAATTA
Found at i:48271 original size:17 final size:17
Alignment explanation
Indices: 48230--48271 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
48220 TATTAATTAT
48230 TAATTAATTTAAATAAAA
1 TAATT-ATTTAAATAAAA
48248 TAA-TATTTAAA-ATAAA
1 TAATTATTTAAATA-AAA
48264 TAATTATT
1 TAATTATT
48272 ATGAGTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 1 0.05
16 13 0.59
17 5 0.23
18 3 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATTATTTAAATAAAA
Found at i:48436 original size:17 final size:18
Alignment explanation
Indices: 48402--48444 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
48392 TACTAGTTAT
48402 AATATAATTTATAAAGATA
1 AATA-AATTTATAAAGATA
*
48421 AATAAATTTA-ATAGATA
1 AATAAATTTATAAAGATA
*
48438 ATTAAAT
1 AATAAAT
48445 AAATTTACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 12 0.55
18 6 0.27
19 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
AATAAATTTATAAAGATA
Found at i:48768 original size:25 final size:25
Alignment explanation
Indices: 48740--48789 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
48730 AAAACTATTT
48740 AATAT-TAAAATAAATATAAATTATA
1 AATATATAAAATAAAT-TAAATTATA
* *
48765 AATATATAATATAAATTATATTATA
1 AATATATAAAATAAATTAAATTATA
48790 TAACTTGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (25 bp):
AATATATAAAATAAATTAAATTATA
Found at i:48790 original size:14 final size:13
Alignment explanation
Indices: 48740--48792 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
48730 AAAACTATTT
*
48740 AATAT-TAAAATA
1 AATATATAATATA
48752 AATATA-AATTATA
1 AATATATAA-TATA
48765 AATATATAATATA
1 AATATATAATATA
*
48778 AATTATATTATATA
1 AA-TATATAATATA
48792 A
1 A
48793 CTTGATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 7 0.20
13 15 0.43
14 13 0.37
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATATATAATATA
Found at i:49237 original size:27 final size:27
Alignment explanation
Indices: 49205--49261 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
49195 TTATCTGATT
*
49205 TATTAATATAATAAT-ATATTATAGTTA
1 TATTAA-ATAATAATAATATTATAATTA
* *
49232 TATTAAATTATAGTAATATTATAATTA
1 TATTAAATAATAATAATATTATAATTA
49259 TAT
1 TAT
49262 AATTAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (27 bp):
TATTAAATAATAATAATATTATAATTA
Found at i:49241 original size:16 final size:17
Alignment explanation
Indices: 49213--49264 Score: 65
Period size: 16 Copynumber: 3.2 Consensus size: 17
49203 TTTATTAATA
*
49213 TAATAATAT-ATTATAG
1 TAATATTATAATTATAG
*
49229 TTATATTA-AATTATAG
1 TAATATTATAATTATAG
49245 TAATATTATAATTATA-
1 TAATATTATAATTATAG
49261 TAAT
1 TAAT
49265 TAAATATTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 24 0.77
17 7 0.23
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (17 bp):
TAATATTATAATTATAG
Found at i:50030 original size:12 final size:11
Alignment explanation
Indices: 49999--50033 Score: 54
Period size: 10 Copynumber: 3.2 Consensus size: 11
49989 TTAAATATTA
49999 AATTATATAAT
1 AATTATATAAT
50010 AATT-TATAAT
1 AATTATATAAT
50020 AATTATGATAAT
1 AATTAT-ATAAT
50032 AA
1 AA
50034 ACATCCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 5 0.23
12 7 0.32
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (11 bp):
AATTATATAAT
Found at i:50079 original size:18 final size:19
Alignment explanation
Indices: 50046--50086 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
50036 ATCCTTATAA
*
50046 ATATATAATTAATATATTG
1 ATATATAATTAATATAATG
*
50065 ATATA-AATTATTATAATG
1 ATATATAATTAATATAATG
50083 ATAT
1 ATAT
50087 TATTGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
ATATATAATTAATATAATG
Found at i:50277 original size:20 final size:20
Alignment explanation
Indices: 50252--50320 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 20
50242 TATTATTTTT
50252 ATAATTAATATTAATATATA
1 ATAATTAATATTAATATATA
*
50272 ATAATTAAAATCTTAATATAATA
1 ATAATT--AATATTAATAT-ATA
*
50295 ATAAGTTATAAATT-ATA-ATA
1 ATAA-TTA-ATATTAATATATA
50315 ATAATT
1 ATAATT
50321 TAAATTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
19 2 0.05
20 13 0.32
22 14 0.34
23 10 0.24
24 2 0.05
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (20 bp):
ATAATTAATATTAATATATA
Found at i:50656 original size:12 final size:12
Alignment explanation
Indices: 50639--50672 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
50629 TATTAATTGT
50639 ATAAATTAATTA
1 ATAAATTAATTA
*
50651 ATAAATTTATTA
1 ATAAATTAATTA
50663 ATATAATTAA
1 ATA-AATTAA
50673 ATTATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATAAATTAATTA
Found at i:51034 original size:20 final size:20
Alignment explanation
Indices: 50997--51034 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50987 ACAAAACAAT
*
50997 TTAATAAGTTATAGTATTCA
1 TTAATAAGTTATAATATTCA
51017 TTAATAA-TTATTAATATT
1 TTAATAAGTTA-TAATATT
51035 AAATTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
TTAATAAGTTATAATATTCA
Found at i:51094 original size:17 final size:17
Alignment explanation
Indices: 51072--51119 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
51062 AATGTATATT
*
51072 AATAATTATTAATACTA
1 AATAATTATTAATAATA
* *
51089 AATAATTAATAATAATT
1 AATAATTATTAATAATA
51106 AATAA-TATTAATAA
1 AATAATTATTAATAA
51120 CTATTTCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
AATAATTATTAATAATA
Found at i:51739 original size:21 final size:21
Alignment explanation
Indices: 51713--51752 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
51703 ATTAACAAAT
51713 ATTAGA-TTAATTAATTATATA
1 ATTAGACTTAATT-ATTATATA
51734 ATTAGACTTAATTATTATA
1 ATTAGACTTAATTATTATA
51753 AATCATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (21 bp):
ATTAGACTTAATTATTATATA
Found at i:52314 original size:181 final size:179
Alignment explanation
Indices: 51752--52830 Score: 976
Period size: 181 Copynumber: 6.0 Consensus size: 179
51742 TAATTATTAT
* * * * * *
51752 AAATCATTATGACCTTTTCTTTTGTAATAAAAC-ACTTGTTTCAATTCATATACGCTTATTTGAA
1 AAATCATTATGATCTTTTGTTTTGTCATAAAACAAC-TGTTTCTATTCATACAAGCTTATTTGAA
* * * * * * *
51816 GTAAGATAATACTAATTCACTAATATTCTGAAAATTAATGAGTAAGAGAATTAAAAAA-AGAATA
65 ATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGT-AGAGATTTAAAAAATA-AATA
* *
51880 TGTTTACCGAATAAGTTCAAATAGTTATGACTATCTGAATAATTATCTATTTC
127 TGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * * * * * * *
51933 AAAACATTACGATCTTTTGTTTTGTCATTAAACAATTGGTTCTGTTCATGCAAGCTTATTTCAAA
1 AAATCATTATGATCTTTTGTTTTGTCATAAAACAACTGTTTCTATTCATACAAGCTTATTTGAAA
* * *
51998 TAAAGTAAT-TTAAATTTATTAATATTCCAAAAATTAATAAGTA-AAACTTTAAAAAATAAATAT
66 TAAAATAATACT-AATTTATTAATATT-CAAAAATTAATAAGTAGAGA-TTTAAAAAATAAATAT
* * * ** * * *
52061 ATTTTCTGAATGATTTTAAATAGTTATGACTATTTGAAGAATTATCTATTTC
128 GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * * * *
52113 AAATCGTTATGA-CTTTTTGTTTTGTCATAAACCAACTGTTTCTATTTATAAAAGCTTTTTTGAA
1 AAATCATTATGATC-TTTTGTTTTGTCATAAAACAACTGTTTCTATTCATACAAGCTTATTTGAA
* *
52177 ATAAAATAATACTAATTTATTAAAATTTCAAAAATTAATAAGTAGAAGATTTAAAAAATAAATCT
65 ATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAG-AGATTTAAAAAATAAATAT
** * * *
52242 GTTTACTTAGCAAGTTCAAATAGTTATGACTATTAGAATAATTATTTATTTC
128 GTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * **
52294 AAATCATTATGATCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAATTTTATTTGAAA
1 AAATCATTATGATCTTTTGTTTTGTCATAAAACAACTGTTTCTATTCATACAAGCTTATTTGAAA
* * * * * *
52359 TAAAATAACACTAATTTATTAGTATTCTAAAATTAATAAGTTTGAGATTTAAAAAAATATATTTG
66 TAAAATAATACTAATTTATTAATATTCAAAAATTAATAAG-TAGAGATTT-AAAAAATAAATATG
**
52424 TTTACCGAACAAGTTCAAATAGTTATGTTTATTTGAACT-ATTATCTATTTC
129 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTTC
* * * * * * *
52475 AAACCATAATGA-CGTTTTGTTTTGTCGTAAAACAATTATTTCTATCCATGTACAA--TTATTTA
1 AAATCATTATGATC-TTTTGTTTTGTCATAAAACAACTGTTTCTATTCA--TACAAGCTTATTTG
* ** * ** *
52537 AAATATAATAATACCGATATATTAATATTTTGATAATTAAT-A--AGAGATTTAAAAACA-AAAT
63 AAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAGAGATTTAAAAA-ATAAAT
* * * *
52598 CTATTTACCGAA-ATAGTTCAAATATTTATGACTATTTGAATAATTATCTATCTC
126 ATGTTTACCGAACA-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
** * * * *
52652 AAATTTTTATGATC-TTTATTTTGTCATAAAACAAGC-GTTTCTTTTCATACTAGCTTA-TTCAA
1 AAATCATTATGATCTTTTGTTTTGTCATAAAACAA-CTGTTTCTATTCATACAAGCTTATTTGAA
* * * * ** *
52714 TTCAAATAATACTAATTTAATAATATTCCAAAATT-AGCA--AGAGATTTAAAAAAATAAATGTG
65 ATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAGAGATTT-AAAAAATAAATATG
** * *
52776 TTTGTCGAACTAA-TTCAAATAGTTAAGACTATTAGAATAATTATCTATTTC
129 TTTACCGAAC-AAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
52827 AAAT
1 AAAT
52831 AATAAGTATT
Statistics
Matches: 731, Mismatches: 137, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
173 1 0.00
174 21 0.03
175 77 0.11
176 32 0.04
177 61 0.08
178 9 0.01
179 3 0.00
180 166 0.23
181 340 0.47
182 16 0.02
183 5 0.01
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (179 bp):
AAATCATTATGATCTTTTGTTTTGTCATAAAACAACTGTTTCTATTCATACAAGCTTATTTGAAA
TAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAGAGATTTAAAAAATAAATATGTT
TACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
Found at i:54585 original size:8 final size:8
Alignment explanation
Indices: 54558--54609 Score: 51
Period size: 7 Copynumber: 7.0 Consensus size: 8
54548 AAATAAGTTA
54558 ATTATAAAT
1 ATTAT-AAT
*
54567 ATAAT-AT
1 ATTATAAT
54574 ATTATAAT
1 ATTATAAT
54582 A-T-T-AT
1 ATTATAAT
54587 ATTATAAT
1 ATTATAAT
54595 ATTATAA-
1 ATTATAAT
54602 ATTATAAT
1 ATTATAAT
54610 TAAACTATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
5 3 0.08
6 2 0.06
7 15 0.42
8 12 0.33
9 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTATAAT
Found at i:54589 original size:13 final size:13
Alignment explanation
Indices: 54571--54600 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
54561 ATAAATATAA
54571 TATATTATAATAT
1 TATATTATAATAT
54584 TATATTATAATAT
1 TATATTATAATAT
54597 TATA
1 TATA
54601 AATTATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATATTATAATAT
Found at i:54598 original size:21 final size:20
Alignment explanation
Indices: 54557--54620 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 20
54547 AAAATAAGTT
54557 AATTATAAATATAATATATTATA
1 AATTAT-AAT-TAA-ATATTATA
54580 ATATTAT-ATTATAATATTATA
1 A-ATTATAATTA-AATATTATA
54601 AATTATAATTAAACTATTAT
1 AATTATAATTAAA-TATTAT
54621 TTTTTTAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
20 7 0.19
21 21 0.57
22 3 0.08
23 1 0.03
24 5 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTATAATTAAATATTATA
Found at i:54611 original size:13 final size:14
Alignment explanation
Indices: 54556--54609 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
54546 AAAAATAAGT
*
54556 TAATTATAAATATAA
1 TAATTAT-AATATTA
54571 TATATTATAATATTA
1 TA-ATTATAATATTA
54586 T-ATTATAATATTA
1 TAATTATAATATTA
54599 TAAATTATAAT
1 T-AATTATAAT
54610 TAAACTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
13 13 0.37
15 17 0.49
16 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATAATATTA
Found at i:54812 original size:45 final size:44
Alignment explanation
Indices: 54737--54821 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 44
54727 AATAGTATAA
* *
54737 TTTTATATTAAAACTAATATTATTATTTATACTTGGTATAAAAAT
1 TTTTATATTAAAACTAATATTATTAGTTATACAT-GTATAAAAAT
*
54782 TTTTATATTAAATCT-ATAATTAATT-GTTATACATGTATAA
1 TTTTATATTAAAACTAAT-ATT-ATTAGTTATACATGTATAA
54822 GATAATAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
44 8 0.23
45 24 0.69
46 3 0.09
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (44 bp):
TTTTATATTAAAACTAATATTATTAGTTATACATGTATAAAAAT
Found at i:55049 original size:20 final size:19
Alignment explanation
Indices: 55002--55057 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 19
54992 AAATAATTAG
* *
55002 ATTTAATTATATTATAAGT
1 ATTTAATTAAATTATAAAT
* *
55021 TTTTTATTAAATTAATAAAT
1 ATTTAATTAAATT-ATAAAT
55041 ATTTAATT--ATTATAAAT
1 ATTTAATTAAATTATAAAT
55058 GTTAATAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 6 0.20
18 3 0.10
19 10 0.33
20 11 0.37
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
ATTTAATTAAATTATAAAT
Found at i:56162 original size:16 final size:16
Alignment explanation
Indices: 56104--56163 Score: 70
Period size: 15 Copynumber: 3.9 Consensus size: 16
56094 TAAATTAAAA
*
56104 AATTAATGTA-TAATT
1 AATTAATATATTAATT
* *
56119 AATTATTATTTTAATT
1 AATTAATATATTAATT
56135 AA-TAATATATTAATT
1 AATTAATATATTAATT
*
56150 AATTAAAATATTAA
1 AATTAATATATTAA
56164 AAATTTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
15 20 0.54
16 17 0.46
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
AATTAATATATTAATT
Found at i:56347 original size:14 final size:15
Alignment explanation
Indices: 56314--56376 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 15
56304 AATTTTTTGA
56314 ATATTAAT-TATATT
1 ATATTAATATATATT
56328 AATATTAATATATATT
1 -ATATTAATATATATT
*
56344 -TATTGAATA-ATATA
1 ATATT-AATATATATT
56358 ATAATT-AT-TATATT
1 AT-ATTAATATATATT
56372 ATATT
1 ATATT
56377 TTATTATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 3 0.07
14 16 0.39
15 13 0.32
16 9 0.22
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATTAATATATATT
Found at i:57676 original size:180 final size:176
Alignment explanation
Indices: 57350--57987 Score: 637
Period size: 180 Copynumber: 3.6 Consensus size: 176
57340 ATTGTCTAAA
* * * *
57350 TTACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTTCGAATAAACTTA-TATGA
1 TTACTTATT-ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAAT-AACCTAGTATGA
** * ** *
57414 ACAAAAACATTTGTTGTATGACAAAACAAAAAATAATAATGATTTGAAATATATAATTGTTCATA
64 ATTAAAA-A-TTGTTTTATGAC-AAACAAAAGGTTATAATGATTTGAAATATATAATTGTTCATA
* * *
57479 TAG-TATAATTTTTTGAATTGGTTAGGTAAATAGAATTATTTTTTAAATCTC
126 TAGTTATAACTATTTGAATTGGTTAGGTAAACA-AATTATTTTTTAAATCTC
*
57530 TTACTTATTATTTTTTGAAATATTAATAAATTCA-TTTTATTTTATTTTGAATAACCTAGTATGA
1 TTACTTATTA-TTTTTGAAATATTAATAAATT-AGTATTATTTTATTTTGAATAACCTAGTATGA
* * *
57594 ATTGAGAAAATTGTTTTATGACAAGAGAAAAGGTTATAA-CATTTGAAATAGATAATTGTTCATA
64 ATT-A-AAAATTGTTTTATGACAA-ACAAAAGGTTATAATGATTTGAAATATATAATTGTTCATA
* * * *
57658 TAGTTTTAACTATTTGAATTGGTTCGGCAAACAAATTTATTTTTTAAATCCC
126 TAGTTATAACTATTTGAATTGGTTAGGTAAACAAA-TTATTTTTTAAATCTC
* * * * * * *
57710 TTAGTTATTACTTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGAATAAGCTTGTATGAA
1 TTACTTATTA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAACCTAGTATGAA
* * * * * *
57775 TTAAATTATCGTTTTATGATATAACAAAAGGTTATAATGATTTGAAGTATAGAATTGTTCAAATA
65 TTAAA-AATTGTTTTATGACA-AACAAAAGGTTATAATGATTTGAAATATATAATTGTTCATATA
* * * *
57840 GTCATAACTATTTGAACTGGTTTGGTAAACATATTCATTTTTTAAATCTC
128 GTTATAACTATTTGAATTGGTTAGGTAAACAAATT-ATTTTTTAAATCTC
* * *
57890 TTA-TTA--ATTTTTGAAAGATTAATAAATTATTATTATTTTATTTTGAATAATC-ATGTATG-A
1 TTACTTATTATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAACCTA-GTATGAA
* * *
57950 TAAAAATAATTGTTCTATGACCAAACAAAAGGTGATAA
65 T-TAAA-AATTGTTTTATGA-CAAACAAAAGGTTATAA
57988 CAATTTAAAA
Statistics
Matches: 382, Mismatches: 60, Indels: 36
0.80 0.13 0.08
Matches are distributed among these distances:
175 2 0.01
176 71 0.19
177 2 0.01
178 2 0.01
179 68 0.18
180 231 0.60
181 3 0.01
182 3 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.44
Consensus pattern (176 bp):
TTACTTATTATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAACCTAGTATGAAT
TAAAAATTGTTTTATGACAAACAAAAGGTTATAATGATTTGAAATATATAATTGTTCATATAGTT
ATAACTATTTGAATTGGTTAGGTAAACAAATTATTTTTTAAATCTC
Found at i:58188 original size:17 final size:17
Alignment explanation
Indices: 58174--58225 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 17
58164 TTAAATTACT
58174 TATTAATAATTATTATA
1 TATTAATAATTATTATA
58191 TATTAATAATT-TT-TA
1 TATTAATAATTATTATA
58206 -ATTAAT-ATT-TTA-A
1 TATTAATAATTATTATA
58219 TATTAAT
1 TATTAAT
58226 TATATATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
13 6 0.18
14 12 0.36
15 2 0.06
16 2 0.06
17 11 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTAATAATTATTATA
Found at i:58235 original size:28 final size:31
Alignment explanation
Indices: 58175--58236 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 31
58165 TAAATTACTT
* *
58175 ATTAATAATTATTATATATTAATAATTTTTA
1 ATTAATAATTATTATATATTAATAATATATA
*
58206 ATTAAT-ATT-TTA-ATATTAATTATATATA
1 ATTAATAATTATTATATATTAATAATATATA
58234 ATT
1 ATT
58237 TGATTATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 16 0.57
29 3 0.11
30 3 0.11
31 6 0.21
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
ATTAATAATTATTATATATTAATAATATATA
Found at i:58794 original size:6 final size:6
Alignment explanation
Indices: 58783--58813 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
58773 TTGATTAAAG
*
58783 AATTCA AATTCA AATTCA AATTCA AAATCA A
1 AATTCA AATTCA AATTCA AATTCA AATTCA A
58814 GTTGAATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (6 bp):
AATTCA
Found at i:59146 original size:6 final size:6
Alignment explanation
Indices: 59135--59173 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
59125 TCAATATTGT
* *
59135 TTAATA TTAATA CTAAT- TTAATA TTGATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
59174 GCTTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:59156 original size:17 final size:17
Alignment explanation
Indices: 59134--59173 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
59124 ATCAATATTG
59134 TTTAATATTAATACTAA
1 TTTAATATTAATACTAA
* *
59151 TTTAATATTGATATTAA
1 TTTAATATTAATACTAA
59168 TATTAA
1 T-TTAA
59174 GCTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAATATTAATACTAA
Found at i:60054 original size:182 final size:174
Alignment explanation
Indices: 59539--60056 Score: 531
Period size: 177 Copynumber: 2.9 Consensus size: 174
59529 TACTAAATTA
* *
59539 TTATTTTTTAAATCTCTTAGTTATTCATTTTTAGAATATTGCTAAATTAGTATTATTTTATTTTG
1 TTATTTTTTAAATGTCTTA-TTA---ATTTTTA-AATATTACTAAATTAGTATTATTTTATTTTG
* * * *
59604 AATAAGCTTGTATGAGCAGAAACAATTATTTTATGATAAAACAAAAGATTGTAACAATTTGAAAT
61 AATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAG-GTATAACAATTTGAAAT
* * *
59669 AGGA-AATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAACTGAT
124 A-GATAATTGTTCAAATAGCCATAATTATTTGAACTAGTTCAATAAACTAAT
* * * **
59720 TTATTTTTTAAATGTCTTATTAATTCTTAAAATATTAATAAATTGGTATTATTTTATTTCAAATA
1 TTATTTTTTAAATGTCTTATTAATT-TTTAAATATTACTAAATTAGTATTATTTTATTTTGAATA
* *
59785 AGCTTGTATGTTGA-AAAACAATTATTTTATGACAAAACAAAAGGTAGTAACAAATTGAAATAGA
65 AGCTTGTATG--AACAAAACAATTATTTTATGACAAAACAAAAGGTA-TAACAATTTGAAATAGA
* * * * *
59849 TAGTTGTTTAAATGGCTATAATTATTTGAACT-GATT-AGGTAAACTAAT
127 TAATTGTTCAAATAGCCATAATTATTTGAACTAG-TTCA-ATAAACTAAT
*
59897 TTATTCTTTTAAATTGGTTACTTATTAATTTTTGAAATATTACTAAAGTAGTATTATTTTATTTT
1 TTATT-TTTTAAA-T-G-T-CTTATTAATTTTT-AAATATTACTAAATTAGTATTATTTTATTTT
* * * * * ** *
59962 GGATAAACTTTTATGAACTAAAACAATTGTTTTATGACAAAACAAATGGTCATAATTATTTTAAA
60 GAATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGT-ATAACAATTTGAAA
*
60027 TAAATAATTGTTCAAATAGCCATAATTATT
123 TAGATAATTGTTCAAATAGCCATAATTATT
60057 CAAACTTGTT
Statistics
Matches: 279, Mismatches: 42, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
176 5 0.02
177 124 0.44
178 11 0.04
179 1 0.00
180 5 0.02
181 21 0.08
182 111 0.40
183 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.42
Consensus pattern (174 bp):
TTATTTTTTAAATGTCTTATTAATTTTTAAATATTACTAAATTAGTATTATTTTATTTTGAATAA
GCTTGTATGAACAAAACAATTATTTTATGACAAAACAAAAGGTATAACAATTTGAAATAGATAAT
TGTTCAAATAGCCATAATTATTTGAACTAGTTCAATAAACTAAT
Found at i:60526 original size:160 final size:160
Alignment explanation
Indices: 60357--60676 Score: 640
Period size: 160 Copynumber: 2.0 Consensus size: 160
60347 ACTGTTTTGT
60357 GGTGTGTGAGGTTGATGTTGGTGTTTGGCTTATATTTTAATAATACTATTTAAATTTGATTTAAT
1 GGTGTGTGAGGTTGATGTTGGTGTTTGGCTTATATTTTAATAATACTATTTAAATTTGATTTAAT
60422 TTATAATAATTAATTTATAAAAAAATATTAAACAATATTTATAATGTGACAATTATATTTATAAT
66 TTATAATAATTAATTTATAAAAAAATATTAAACAATATTTATAATGTGACAATTATATTTATAAT
60487 ATTATTAATACTTATTATAATAGATCTAAA
131 ATTATTAATACTTATTATAATAGATCTAAA
60517 GGTGTGTGAGGTTGATGTTGGTGTTTGGCTTATATTTTAATAATACTATTTAAATTTGATTTAAT
1 GGTGTGTGAGGTTGATGTTGGTGTTTGGCTTATATTTTAATAATACTATTTAAATTTGATTTAAT
60582 TTATAATAATTAATTTATAAAAAAATATTAAACAATATTTATAATGTGACAATTATATTTATAAT
66 TTATAATAATTAATTTATAAAAAAATATTAAACAATATTTATAATGTGACAATTATATTTATAAT
60647 ATTATTAATACTTATTATAATAGATCTAAA
131 ATTATTAATACTTATTATAATAGATCTAAA
60677 AAATAAATCT
Statistics
Matches: 160, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
160 160 1.00
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (160 bp):
GGTGTGTGAGGTTGATGTTGGTGTTTGGCTTATATTTTAATAATACTATTTAAATTTGATTTAAT
TTATAATAATTAATTTATAAAAAAATATTAAACAATATTTATAATGTGACAATTATATTTATAAT
ATTATTAATACTTATTATAATAGATCTAAA
Found at i:60765 original size:27 final size:28
Alignment explanation
Indices: 60699--60765 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
60689 TTAGATATCT
60699 ATTAATTAATAAAATCAATAATTAAAATA
1 ATTAA-TAATAAAATCAATAATTAAAATA
* * * *
60728 TTTAA-ATTAAAATCAAT-ATTCATATA
1 ATTAATAATAAAATCAATAATTAAAATA
60754 ATTAATAATAAA
1 ATTAATAATAAA
60766 TTATAAGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 11 0.35
27 16 0.52
29 4 0.13
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.37
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:61659 original size:18 final size:18
Alignment explanation
Indices: 61611--61659 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
61601 AATAAAAATC
61611 AATAATTAA-AATATTTA
1 AATAATTAATAATATTTA
61628 AATTAA--AATCAATATTTA
1 AA-TAATTAAT-AATATTTA
*
61646 GATAATTAATAATA
1 AATAATTAATAATA
61660 AATTATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
16 2 0.08
17 5 0.19
18 16 0.62
19 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
AATAATTAATAATATTTA
Found at i:61661 original size:27 final size:28
Alignment explanation
Indices: 61594--61661 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
61584 TTAGATATTT
61594 ATTAATTAATAAAAATCAATAATTAAAATA
1 ATTAA-TAAT-AAAATCAATAATTAAAATA
* * * *
61624 TTTAA-ATTAAAATCAAT-ATTTAGATA
1 ATTAATAATAAAATCAATAATTAAAATA
61650 ATTAATAATAAA
1 ATTAATAATAAA
61662 TTATAAGTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.35
27 14 0.45
28 2 0.06
30 4 0.13
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:61677 original size:27 final size:25
Alignment explanation
Indices: 61638--61719 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 25
61628 AATTAAAATC
61638 AATATTTAGATAATTAATAATAAATTA
1 AATATTT--ATAATTAATAATAAATTA
*
61665 TAAGTATTTATAA-TAATAATTTAATTA
1 -AA-TATTTATAATTAATAA-TAAATTA
*
61692 AATATTTAT-ATT-TTAATAAATTCA
1 AATATTTATAATTAATAATAAATT-A
61716 AATA
1 AATA
61720 ATTGTTAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
23 5 0.11
24 9 0.19
25 8 0.17
26 8 0.17
27 10 0.21
28 2 0.04
29 5 0.11
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (25 bp):
AATATTTATAATTAATAATAAATTA
Found at i:61681 original size:23 final size:25
Alignment explanation
Indices: 61652--61701 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
61642 TTTAGATAAT
*
61652 TAATAATAAATT-A-TAAGTATTTA
1 TAATAATAAATTAATTAAATATTTA
*
61675 TAATAATAATTTAATTAAATATTTA
1 TAATAATAAATTAATTAAATATTTA
61700 TA
1 TA
61702 TTTTAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 11 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TAATAATAAATTAATTAAATATTTA
Found at i:62007 original size:26 final size:25
Alignment explanation
Indices: 61955--62016 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
61945 CTATTCAGCC
*
61955 ATTATTATTAATATTAATAATTCAAT
1 ATTATTATTAATATTAAT-ATTAAAT
61981 ATTATTATTAAAATATTAAT-TTAAAT
1 ATTATTATT--AATATTAATATTAAAT
*
62007 AGTTAATATT
1 A-TTATTATT
62017 TAATTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 15 0.48
27 7 0.23
28 9 0.29
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTATTATTAATATTAATATTAAAT
Found at i:62615 original size:180 final size:180
Alignment explanation
Indices: 62346--63216 Score: 673
Period size: 180 Copynumber: 4.8 Consensus size: 180
62336 AAAATTAATA
* * * * *
62346 AGATTTAAAAAATAAATATG-TTAGC-CGAACTAGTTCAAATAGTTAAGACTA-TCAGAATAATT
1 AGATTTAAAAACTAAAT-TGTTTA-CTC-AACAAGTTCAAATAGTTATGACTATTTA-AACAATT
* * * * *
62408 ATCTATTTCAAATCATTCT-ATCATTTTGTTTAGTCATAAAACAATTATTTTAGTTCATACAAGC
62 ATCTATTTAAAATCGTTATGA-CATTTTGTTTAGTCATAAAACAATTGTTTTAGTTCATAAAAGC
* *
62472 TTATTTGGAATAAAATAATACTAATTTATTAACATTCAAAAAATT-A-AAGCAAG
126 TTATTTGAAATAAAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAG
* * ** * *
62525 AGATTTAAAAAAATAAATCTGTTTACTGAACATTTTCAAATAGATATGACTATTTAAACAATTGT
1 AGATTT-AAAAACTAAAT-TGTTTACTCAACAAGTTCAAATAGTTATGACTATTTAAACAATTAT
* ** * * * *
62590 CTGTTTAAAATTATCT-TGACATTTTGTTTTA-TCATAAAACAATTGTTTCAATTAATAAAAACT
64 CTATTTAAAATCGT-TATGACATTTTG-TTTAGTCATAAAACAATTGTTTTAGTTCATAAAAGCT
* * * * *
62653 TATCTGAAATAAATTAATACTATTTTATTAATATTTAAAAAATTATTAAGCAAG
127 TATTTGAAATAAAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAG
* * * * * *
62707 AGATTTAAAAACTAAAGTTGTTT-TTCAAAAGAGTTCTAATGGTTATGACTATTTGAACAAATAT
1 AGATTTAAAAACTAAA-TTGTTTACTCAACA-AGTTCAAATAGTTATGACTATTTAAACAATTAT
* * * * * * * *
62771 -TAATCTCAAATCGTTATGA-TTTTTATTTTGTCATAAAACAATTATTTT-TTATCATATAAGCT
64 CT-ATTTAAAATCGTTATGACATTTTGTTTAGTCATAAAACAATTGTTTTAGT-TCATAAAAGCT
* * * * ** *
62833 GATTT-AGATAAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGTAAG
127 TATTTGAAAT-AAAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAG
* * * * * *
62887 AGATTTAAAAATTAAATGTGTTTGC-CAATC-AGTTCAAATAGTTAAGATTA-TCATAATAATTA
1 AGATTTAAAAACTAAAT-TGTTTACTCAA-CAAGTTCAAATAGTTATGACTATTTA-AACAATTA
* * * * * * * *
62949 TCTATTTCAAATTGTTCTGGTC-TTTTGTTTAATCATAAAATAATTGTTTCAGTTCATAGAAGCT
63 TCTATTTAAAATCGTTAT-GACATTTTGTTTAGTCATAAAACAATTGTTTTAGTTCATAAAAGCT
* * * * * *
63013 TATTCGAAAGAAAATAATACTAATTTATTAACTTTTGAAAGATTAATAAGCAGG
127 TATTTGAAATAAAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAG
* * *
63067 ATATTTGAAAAACTAAATTTATTTAC-CGAACAAGTTCAAATAGTTATGACTATTTGAACAATTA
1 AGATTT-AAAAACTAAA-TTGTTTACTC-AACAAGTTCAAATAGTTATGACTATTTAAACAATTA
* * * * *
63131 TCTATTTAAAATCGTTGTGA-ATTTTTGTTTTGTCATAAAACAATTGTTTTAGTCCACAAAAGTT
63 TCTATTTAAAATCGTTATGACA-TTTTGTTTAGTCATAAAACAATTGTTTTAGTTCATAAAAGCT
***
63195 TATCCAAAATAAAATAATACTA
127 TATTTGAAATAAAATAATACTA
63217 CTTTTCTTAA
Statistics
Matches: 539, Mismatches: 121, Indels: 61
0.75 0.17 0.08
Matches are distributed among these distances:
178 1 0.00
179 49 0.09
180 298 0.55
181 80 0.15
182 110 0.20
183 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (180 bp):
AGATTTAAAAACTAAATTGTTTACTCAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCT
ATTTAAAATCGTTATGACATTTTGTTTAGTCATAAAACAATTGTTTTAGTTCATAAAAGCTTATT
TGAAATAAAATAATACTAATTTATTAACATTTAAAAAATTAATAAGCAAG
Found at i:63582 original size:243 final size:242
Alignment explanation
Indices: 63152--63588 Score: 547
Period size: 243 Copynumber: 1.8 Consensus size: 242
63142 TCGTTGTGAA
* **
63152 TTTTTGTTTTGTCATAAAACAATTGTTTTAGTCCACAAAAGTTTATCCAAAATAAAATAATACTA
1 TTTTTGTTTTGTCATAAAACAATTATTTTAGAACACAAAAGTTTATCCAAAATAAAATAATACTA
* * * * * * * * * **
63217 CTTTTCTTAATATTTTGAAAATTAAGAGATTCAAAAAATAAATCAGTTTGCTGACTCAGTTTGAA
66 CATTTATTAATATTTTCAAAATTAAGAGATCCAAAAAATAAATCAGTTTACCGAATAAATTCAAA
* * *
63282 TAATTATGGCCATTTGAACAATTATCTATTTCAAATTATTATTACCTTTCATTTTGTCATAAAAC
131 TAATTATGACCATTTGAACAATTATCTATTTCAAATTATTATAACATTTCATTTTGTCATAAAAC
63347 AATTGTTTTTCAACATACAAACTTATTTGAAATAAAATTGTTAGTAC
196 AATTGTTTTTCAACATACAAACTTATTTGAAATAAAATTGTTAGTAC
* *** * **
63394 TTTTTGTTTTGTCATAAAACAATTATTTTTGAATGTATAAGTTTATCTGAAATAAAATAATA-TA
1 TTTTTGTTTTGTCATAAAACAATTATTTTAGAACACAAAAGTTTATCCAAAATAAAATAATACTA
*
63458 -ATTTATTAATA-TTTCAAGAATTAGTATGAGATCCAAAAAATAAATCTGTTTACCGAATAAATT
66 CATTTATTAATATTTTCAA-AATTA--A-GAGATCCAAAAAATAAATCAGTTTACCGAATAAATT
* * * **
63521 CAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAATATTTTGTTTTGTCATA
127 CAAATAATTATGACCATTTGAACAATTATCTATTTCAAATTATTATAACATTTCATTTTGTCATA
63586 AAA
192 AAA
63589 TATTATTTTT
Statistics
Matches: 161, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
239 5 0.03
240 14 0.09
241 2 0.01
242 53 0.33
243 87 0.54
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (242 bp):
TTTTTGTTTTGTCATAAAACAATTATTTTAGAACACAAAAGTTTATCCAAAATAAAATAATACTA
CATTTATTAATATTTTCAAAATTAAGAGATCCAAAAAATAAATCAGTTTACCGAATAAATTCAAA
TAATTATGACCATTTGAACAATTATCTATTTCAAATTATTATAACATTTCATTTTGTCATAAAAC
AATTGTTTTTCAACATACAAACTTATTTGAAATAAAATTGTTAGTAC
Found at i:63592 original size:20 final size:21
Alignment explanation
Indices: 63567--63615 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
63557 AAATTGTTAT
*
63567 AATATTTTGTTTTG-TCATA-A
1 AATATTAT-TTTTGTTCATATA
63587 AATATTATTTTTGTTCATATA
1 AATATTATTTTTGTTCATATA
63608 AAT-TTATT
1 AATATTATT
63616 CAAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 5 0.19
20 17 0.65
21 4 0.15
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (21 bp):
AATATTATTTTTGTTCATATA
Found at i:63826 original size:180 final size:180
Alignment explanation
Indices: 63519--63948 Score: 474
Period size: 181 Copynumber: 2.4 Consensus size: 180
63509 ACCGAATAAA
* ** *
63519 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAATATTTTGTTTTGTCA
1 TTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTCA
* ** * * *
63584 TAAAATATTATTTTTGTTCATATAAATTTATTCAAAATAAAATAATACTAAATTAATAATA-TTC
66 TAAAAAATTATTTCAGTTCATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATTTC
* * * *
63648 TAGAAA-TTCATAACTAAGAGATTTAAAAAA-AAAATTGTTTCTTGAACCGG
131 -A-AAATTTCATAACTAAGAGATTTAAAAAATAAAATTATTTATTAAACCAG
* * * * * * * *
63698 TTTAAATAGTTAAGACTATATGAATAATGATCTATTTTAAATTGTTATGACCTTTTATTTTGTTA
1 TTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTCA
* ** * *
63763 TAAAACAATTATTTCAGCTT-ATACAAGCTTATTCGTAATAAAATAAAACTAATTTATTAATATT
66 TAAAA-AATTATTTCAG-TTCATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATT
* * * **
63827 TCAAAATTTTATAAGTAAGAGTTTTAAAAAATAATTTTATTTATTAAACCAG
129 TCAAAATTTCATAACTAAGAGATTTAAAAAATAAAATTATTTATTAAACCAG
* *
63879 TTCAAATAATTATA-ACTATTTGAACAATTATATATTTCAATTTGTTATAACCTTTTATTTTGTC
1 TTCAAATAATTA-AGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTC
63943 ATAAAA
65 ATAAAA
63949 TAATACTAAT
Statistics
Matches: 203, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
179 61 0.30
180 64 0.32
181 77 0.38
182 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.43
Consensus pattern (180 bp):
TTCAAATAATTAAGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTCA
TAAAAAATTATTTCAGTTCATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATTTC
AAAATTTCATAACTAAGAGATTTAAAAAATAAAATTATTTATTAAACCAG
Found at i:64208 original size:323 final size:323
Alignment explanation
Indices: 63620--64238 Score: 734
Period size: 323 Copynumber: 1.9 Consensus size: 323
63610 TTTATTCAAA
* *
63620 ATAAAATAATACTAAATTAATAATATTCTAGAAATTCATAACTAAGAGATTTAAAAAAAAAATTG
1 ATAAAATAATACTAAATAAATAATATTCTAGAAATTAATAACTAAGAGATTTAAAAAAAAAATTG
** ** * * * * * ** *
63685 TTTCTTGAACCGGTTTAAATAGTTAAGACTATATGAATAATGATCTATTTTAAATTGTTATGACC
66 TTTCTCAAACCACTTCAAATAGTTAAGACTATATAAACAATGATATATTTCAAATACTTATGACA
* * * *
63750 TTTTATTTTGTTATAAAACAATTATTTCAGCTTATACAAGCTTATTCGTAATAAAATAAAACTAA
131 TTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTCGGAATAAAACAAAACAAA
* * * * **
63815 TTTATTAATATTTCAAAATTTTATAAGTAAGAGTTTTAAAAAATAATTTTATTTATTAAACCAGT
196 TGTATTAATATTTCAAAAATTAATAAGTAAGAGTATTAAAAAATAATTTTATTTACCAAACCAGT
63880 TCAAATAATTAT-AACTATTTGAACAATTATATATTTCAATTTGTTATAACCTTTTATTTTGTC
261 TCAAATAATTATGAA-TATTTGAACAATTATATATTTCAATTTGTTATAACCTTTTATTTTGTC
* * *
63943 ATAAAATAATACT-AATCAAATAATATT-TTGACAATTAATAACTAAGAGATTTAAAAAGTAAAT
1 ATAAAATAATACTAAAT-AAATAATATTCTAGA-AATTAATAACTAAGAGATTTAAAAA-AAAAA
* * *
64006 TTGTTTGC-CAAACCACTTCAAATGGTTAAGGCTATATAAACAATTATATATTTCAAATACTTAT
63 TTGTTT-CTCAAACCACTTCAAATAGTTAAGACTATATAAACAATGATATATTTCAAATACTTAT
* * * *
64070 GACATTTT-TTTTATTGTAAAGCAATTTTTTTAGCTCT-TACTAA-CTTATTCGGAATAAAACAA
127 GACATTTTATTTTATTATAAAACAATTATTTCAGCT-TATAC-AAGCTTATTCGGAATAAAACAA
*
64132 ATCAAATGTATTAATATTTCAAAAATTAATAAGTAAGAG-ATTAAAAATATAATTTTA-TTAGCC
190 AACAAATGTATTAATATTTCAAAAATTAATAAGTAAGAGTATTAAAAA-ATAATTTTATTTA-CC
* ** * *
64195 GAAGTAGTTCAAATAATTATGAATATTTGAATAATTATCTATTT
253 AAACCAGTTCAAATAATTATGAATATTTGAACAATTATATATTT
64239 TAAATCGTTA
Statistics
Matches: 247, Mismatches: 40, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
322 16 0.06
323 167 0.68
324 63 0.26
325 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (323 bp):
ATAAAATAATACTAAATAAATAATATTCTAGAAATTAATAACTAAGAGATTTAAAAAAAAAATTG
TTTCTCAAACCACTTCAAATAGTTAAGACTATATAAACAATGATATATTTCAAATACTTATGACA
TTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTCGGAATAAAACAAAACAAA
TGTATTAATATTTCAAAAATTAATAAGTAAGAGTATTAAAAAATAATTTTATTTACCAAACCAGT
TCAAATAATTATGAATATTTGAACAATTATATATTTCAATTTGTTATAACCTTTTATTTTGTC
Found at i:64551 original size:15 final size:16
Alignment explanation
Indices: 64531--64560 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64521 ATGACCCATT
64531 TTATTTTTAT-TTTTA
1 TTATTTTTATATTTTA
64546 TTATTTTTATATTTT
1 TTATTTTTATATTTT
64561 GTATCTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTTTTATATTTTA
Found at i:64612 original size:26 final size:27
Alignment explanation
Indices: 64569--64635 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
64559 TTGTATCTAA
64569 TAATATATATTTTTATTAGTTATCCAT
1 TAATATATATTTTTATTAGTTATCCAT
* **
64596 TAATAT-TATTTTTATTATTTATTTAT
1 TAATATATATTTTTATTAGTTATCCAT
*
64622 TAATGTATATTTTT
1 TAATATATATTTTT
64636 TATATTTATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 22 0.63
27 13 0.37
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (27 bp):
TAATATATATTTTTATTAGTTATCCAT
Found at i:64955 original size:10 final size:10
Alignment explanation
Indices: 64925--64957 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
64915 TTAGAGGCAG
64925 TTTA-GAATT
1 TTTAGGAATT
64934 TTTAGGAGATT
1 TTTAGGA-ATT
64945 TTTAGGAATT
1 TTTAGGAATT
64955 TTT
1 TTT
64958 TGGCGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.18
10 8 0.36
11 10 0.45
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (10 bp):
TTTAGGAATT
Found at i:64968 original size:21 final size:20
Alignment explanation
Indices: 64925--64968 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
64915 TTAGAGGCAG
*
64925 TTTAGAATTTTTAGGAGATT
1 TTTAGAATTTTTAGGAGAAT
* *
64945 TTTAGGAATTTTTTGGCGAAT
1 TTTA-GAATTTTTAGGAGAAT
64966 TTT
1 TTT
64969 TTTCTGGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.25, C:0.02, G:0.20, T:0.52
Consensus pattern (20 bp):
TTTAGAATTTTTAGGAGAAT
Found at i:65140 original size:20 final size:20
Alignment explanation
Indices: 65095--65133 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
65085 CTTTGGGTAG
65095 AGAAAGAAGGAGGAGAAAAA
1 AGAAAGAAGGAGGAGAAAAA
65115 AGAAAGAA-GAGAGAGAAAA
1 AGAAAGAAGGAG-GAGAAAA
65134 GGGAAAGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (20 bp):
AGAAAGAAGGAGGAGAAAAA
Found at i:68887 original size:15 final size:15
Alignment explanation
Indices: 68864--68897 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
68854 TTCATGCATG
* *
68864 CATTTTCATTCATTA
1 CATTCTCATTCAATA
68879 CATTCTCATTCAATA
1 CATTCTCATTCAATA
68894 CATT
1 CATT
68898 TAACAAAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (15 bp):
CATTCTCATTCAATA
Found at i:76153 original size:16 final size:16
Alignment explanation
Indices: 76116--76178 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 16
76106 TTATGCTTTT
76116 AAAAAAATGAAAA-AA
1 AAAAAAATGAAAAGAA
*
76131 AGGAAAAAATTGAAATGAA
1 A--AAAAAA-TGAAAAGAA
76150 AAAAAAATGAAAAGAA
1 AAAAAAATGAAAAGAA
76166 AAAGAAAA-GAAAA
1 AAA-AAAATGAAAA
76179 AGGCAATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 1 0.02
16 16 0.39
17 16 0.39
18 5 0.12
19 3 0.07
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (16 bp):
AAAAAAATGAAAAGAA
Found at i:77231 original size:43 final size:43
Alignment explanation
Indices: 77168--77597 Score: 490
Period size: 43 Copynumber: 9.9 Consensus size: 43
77158 GAGCATTTAC
77168 TTTCAAAAGTTG-TGATGCCTCTGTTTAGAGGAGCTTTGTTTATT
1 TTTC-AAAGTTGTTGA-GCCTCTGTTTAGAGGAGCTTTGTTTATT
** *
77212 TTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
** * *
77255 TTTCAAAGTTGTTGAGCCTCTAATTAGAGAAACTTTGTTTATTTT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTA--TT
*
77300 CTTTC-AAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATT
1 -TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* * *
77343 TTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGTTTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTG-TTTATT
* *
77387 TTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* * * *
77430 TTCCAAAGTTGTTGAGCCTGTGATTAGAGAAG-TTTCGTTTATTT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTT-GTTTA-TT
** ** * *
77474 TCTTTTAAGTCATTGAGCCTCTGATTAAAGGAGCTTTGTTTATT
1 T-TTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* * *
77518 TTTCAAAGTCGTTGAGCCTCTGTTTAGAGAAGCTTTATTTATT
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
* *
77561 TTCCAAAGTTGTTGAGCCTTTGTTTAG-GTGAGCTTTG
1 TTTCAAAGTTGTTGAGCCTCTGTTTAGAG-GAGCTTTG
77598 ATCAAAATTT
Statistics
Matches: 325, Mismatches: 50, Indels: 23
0.82 0.13 0.06
Matches are distributed among these distances:
42 7 0.02
43 199 0.61
44 51 0.16
45 61 0.19
46 7 0.02
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (43 bp):
TTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATT
Found at i:77474 original size:175 final size:174
Alignment explanation
Indices: 77162--77596 Score: 615
Period size: 175 Copynumber: 2.5 Consensus size: 174
77152 GTCAAGGAGC
* * * **
77162 ATTTACTTTCAAAAGTTG-TGATGCCTCTGTTTAGAGGAGCTTTGTTTATTTTTCAAAGTCATTG
1 ATTTATTTTCCAAAGTCGTTGA-GCCTCTGTTTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTG
*
77226 AGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTAATTAGAGAAACTTT
65 AGCCTCTGTTTAGAGGAGCTTTATTTATTTTCCAAAGTTGTTGAGCCTCTAATTAGAGAAACTTT
** * *
77291 GTTTATTTTCTTTCAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTT
130 GTTTATTTTCTTTCAAGTCATTGAGCCTCTGATTAAAGGAGCTTT
*
77336 ATTTATTTTCCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGTTTTATTTTTCAAAGTTGTTG
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTTG-TTTATTTTTCAAAGTTGTTG
* * * *
77401 AGCCTCTATTTAGAGGAGCTTTATTTATTTTCCAAAGTTGTTGAGCCTGTGATTAGAG-AAGTTT
65 AGCCTCTGTTTAGAGGAGCTTTATTTATTTTCCAAAGTTGTTGAGCCTCTAATTAGAGAAACTTT
*
77465 CGTTTATTTTCTTTTAAGTCATTGAGCCTCTGATTAAAGGAGCTTT
130 -GTTTATTTTCTTTCAAGTCATTGAGCCTCTGATTAAAGGAGCTTT
* * * * *
77511 GTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGAAGCTTTATTTATTTTCCAAAGTTGTTGA
1 ATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTGA
*
77576 GCCTTTGTTTAG-GTGAGCTTT
66 GCCTCTGTTTAGAG-GAGCTTT
77597 GATCAAAATT
Statistics
Matches: 233, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
173 1 0.00
174 78 0.33
175 154 0.66
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (174 bp):
ATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTGA
GCCTCTGTTTAGAGGAGCTTTATTTATTTTCCAAAGTTGTTGAGCCTCTAATTAGAGAAACTTTG
TTTATTTTCTTTCAAGTCATTGAGCCTCTGATTAAAGGAGCTTT
Found at i:77556 original size:131 final size:131
Alignment explanation
Indices: 77162--77597 Score: 582
Period size: 131 Copynumber: 3.3 Consensus size: 131
77152 GTCAAGGAGC
* *
77162 ATTTACTTTCAAAAGTTG-TGATGCCTCTGTTTAGAGGAGCTTTGTTTA-TTT-TTCAAAGTCAT
1 ATTTATTTTCCAAAGTTGTTGA-GCCTCTGTTTAGAGGAGCTTTGTTTATTTTCTTCAAAGTCAT
* * * *
77224 TGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTAATTAGAGAAACT
65 TGAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAGCT
77289 TT
130 TT
* *
77291 GTTTATTTTCTTTC-AAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTC--CAAAGTC
1 ATTTATTTTC---CAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATTTTCTTCAAAGTC
* *
77353 GTTGAGCCTCTGATTAGAGGAGCTTTGTTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGA
63 ATTGAGCCTCTGATTAGAGGAGCTTTG-TTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAA
77418 GCTTT
127 GCTTT
* * * **
77423 ATTTATTTTCCAAAGTTGTTGAGCCTGTGATTAGAGAAG-TTTCGTTTATTTTCTTTTAAGTCAT
1 ATTTATTTTCCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTT-GTTTATTTTCTTCAAAGTCAT
* * *
77487 TGAGCCTCTGATTAAAGGAGCTTTGTTTATTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGAAGCT
65 TGAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAGCT
77552 TT
130 TT
*
77554 ATTTATTTTCCAAAGTTGTTGAGCCTTTGTTTAG-GTGAGCTTTG
1 ATTTATTTTCCAAAGTTGTTGAGCCTCTGTTTAGAG-GAGCTTTG
77598 ATCAAAATTT
Statistics
Matches: 269, Mismatches: 25, Indels: 24
0.85 0.08 0.08
Matches are distributed among these distances:
129 12 0.04
130 34 0.13
131 136 0.51
132 87 0.32
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (131 bp):
ATTTATTTTCCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCTTTGTTTATTTTCTTCAAAGTCATT
GAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAGCTT
T
Found at i:77871 original size:27 final size:27
Alignment explanation
Indices: 77796--77909 Score: 106
Period size: 27 Copynumber: 4.1 Consensus size: 27
77786 TTTTTATTTT
* *
77796 TATT-TTTTTTATATATTTTTTTATCTAA
1 TATTATTTTTTAT-TATTTATCTAT-TAA
* * * *
77824 TAATATATATTTATTAGTTATCCATTAA
1 TATTAT-TTTTTATTATTTATCTATTAA
77852 TATTATTTTTTATTATTTATCTATTAA
1 TATTATTTTTTATTATTTATCTATTAA
* *
77879 TGTATATTTTTTA-TATTTATCTATTAT
1 TAT-TATTTTTTATTATTTATCTATTAA
77906 TATT
1 TATT
77910 TTTCTTTTGG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 35 0.50
28 20 0.29
29 8 0.11
30 6 0.09
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (27 bp):
TATTATTTTTTATTATTTATCTATTAA
Found at i:78234 original size:21 final size:21
Alignment explanation
Indices: 78194--78234 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78184 GAGGCAATTT
*
78194 AGAATTTTTAGGAGATTTTTA
1 AGAATTTTTAGGAGAATTTTA
* *
78215 AGAATTTTTTGGCGAATTTT
1 AGAATTTTTAGGAGAATTTT
78235 TTTTCTGGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.20, T:0.49
Consensus pattern (21 bp):
AGAATTTTTAGGAGAATTTTA
Found at i:78571 original size:3 final size:3
Alignment explanation
Indices: 78565--78618 Score: 92
Period size: 3 Copynumber: 18.0 Consensus size: 3
78555 TTTTTCTTAT
78565 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
78611 TTA -TA TTA
1 TTA TTA TTA
78619 GAATAATTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 44 0.90
4 3 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:78646 original size:5 final size:5
Alignment explanation
Indices: 78636--78679 Score: 79
Period size: 5 Copynumber: 8.6 Consensus size: 5
78626 TTGGTATTCC
78636 TTATT TTATTT TTATT TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTA-TT TTATT TTATT TTATT TTATT TTATT TTATT TTA
78680 ATGATTTTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:78785 original size:58 final size:58
Alignment explanation
Indices: 78706--79048 Score: 416
Period size: 58 Copynumber: 6.0 Consensus size: 58
78696 AAAATTCTAA
* *
78706 AAAAAATATTTTTGAGTAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTCT
* * *
78764 AAAAAATATTTTCGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT-AATTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTCT
* * *
78821 AAAAAAATATTTTTGAGGAAAAGGTAAAAGTATCAATTTTTCTTGAAAATAAAATTTT-T
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTTCT
*
78880 AAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-T
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTCT
* * * *
78936 GAAAAAATATTTTTAAGGAACAGTTGAAAGTATCAATTTT--TTCGAAATTAAAGTTTC-
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATAAATTTTCT
* * * *
78993 AGAAAAACA-TTTTGGGGAAAAGTTGAAAGTACCAATTTTCACTT-AAAAAAAATTTT
1 A-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC-CTTGAAAATAAATTTT
79049 AAGAAAAAGT
Statistics
Matches: 247, Mismatches: 27, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
56 37 0.15
57 76 0.31
58 125 0.51
59 3 0.01
60 6 0.02
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTCT
Found at i:78966 original size:115 final size:115
Alignment explanation
Indices: 78683--79048 Score: 458
Period size: 115 Copynumber: 3.2 Consensus size: 115
78673 TATTTTAATG
* *
78683 ATTTT-CTT-AAAATAAA-ATTCTAAAAAAAATATTTTTGAGTAAAAGTTGAAAGTATCAATTTT
1 ATTTTCCTTAAAAATAAATTTTCT-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * *
78745 CCTTGAAAATAAGTTTTCTAAAAAATATTTTCGAGAAAAAGTTGAAAGTATCA
65 TCTTGAAAATAAATTTT-TAAAAAATATTTT-GAGGAAAAGTTGAAAGTATCA
* * * *
78798 ATTTTCTTTGAAAAT-AATTTTCTAAAAAAATATTTTTGAGGAAAAGGTAAAAGTATCAATTTTT
1 ATTTTCCTTAAAAATAAATTTTCTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
78862 CTTGAAAATAAAATTTTTAAAAAATATTTTGAGGAAAAGTTGAAAGTATCA
66 CTTGAAAAT-AAATTTTTAAAAAATATTTTGAGGAAAAGTTGAAAGTATCA
* * *
78913 ATTTTCCTTAAAAATAAATTTT-TGAAAAAATATTTTTAAGGAACAGTTGAAAGTATCAATTTTT
1 ATTTTCCTTAAAAATAAATTTTCTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
* * * * * * *
78977 -TCGAAATTAAAGTTTCAGAAAAACATTTTGGGGAAAAGTTGAAAGTACCA
66 CTTGAAAATAAATTTTTA-AAAAATATTTTGAGGAAAAGTTGAAAGTATCA
79027 ATTTTCACTTAAAAA-AAATTTT
1 ATTTTC-CTTAAAAATAAATTTT
79049 AAGAAAAAGT
Statistics
Matches: 222, Mismatches: 22, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
113 7 0.03
114 48 0.22
115 83 0.37
116 69 0.31
117 15 0.07
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (115 bp):
ATTTTCCTTAAAAATAAATTTTCTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
CTTGAAAATAAATTTTTAAAAAATATTTTGAGGAAAAGTTGAAAGTATCA
Found at i:80013 original size:120 final size:119
Alignment explanation
Indices: 79854--80089 Score: 323
Period size: 120 Copynumber: 2.0 Consensus size: 119
79844 TTGAAAAATG
* * * **
79854 AATCTATTTACTGAACAAGTTCAAATAGTTATGGCTATTTGAACAATTATCTATTTCGAATTGCT
1 AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
*
79919 ATAACCTTATGTTTTTTCATAAAACAATT-TTTTCTATTCATACAAA-CTTATTTCA
66 ATAACCTTATGTTTTGTCATAAAAC-ATTATTTT-TATTCATA-AAAGCTTATTTCA
* * * *
79974 AATCTATTTACCGAATAAGTTGAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATT
1 AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
* *
80039 ATGACCTTTTGTTTTGTCATAAAACATTATTTTTATTCATAAAAGCTTATT
66 ATAACCTTATGTTTTGTCATAAAACATTATTTTTATTCATAAAAGCTTATT
80090 CAGATTAAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
118 3 0.03
119 17 0.17
120 82 0.80
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (119 bp):
AATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
ATAACCTTATGTTTTGTCATAAAACATTATTTTTATTCATAAAAGCTTATTTCA
Found at i:80358 original size:179 final size:176
Alignment explanation
Indices: 79980--80768 Score: 666
Period size: 179 Copynumber: 4.4 Consensus size: 176
79970 TTCAAATCTA
* * * * * * * *
79980 TTTACCGAATAAGTTGAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACC
1 TTTACCAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGATC
* * * * * *
80045 TTTTGTTTTGTCATAAAACATTATT-TTTA-TTCATAAAAGC-TTATTCAGATTAAAATAATGTT
66 TTTTG-TTTGTCATAAAA-A--ATTGTTCAGTTCATAAAGGCTTTTTTGA-AATAAAATAAT-AT
* *
80107 AATTTATTAATATTTC-AATAATTAATAAGTAAAAGATTTAAAAAATAAATATG
125 AATTTATTAATA-TTCAAAAAATTAATAAGT-AAAGATTTAAAAAATAAATTTG
* * * * * * *
80160 TTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGTTTTGATC
1 TTTACCAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGATC
* * * * *
80225 TTTTGTTTCGTCA-AAAAAAATGTATCAGTTTATATAGGCTTTTTTGAAATAAAACAATACTAAC
66 TTTTGTTT-GTCATAAAAAATTGT-TCAGTTCATAAAGGCTTTTTTGAAATAAAATAATA-TAAT
* *
80289 TTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAAAAAATGAATTTG
128 TTATTAATATTCAAAAAATTAATAAGTAA-AGATTTAAAAAATAAATTTG
* * * * *
80339 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTAAGACC
1 TTTACCAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGATC
* *
80404 TTTTATTTTGTCATAAAATAATTGTT-ACGTTCATACAA-GCTTATTTCG-AATAAAATAATATA
66 TTTT-GTTTGTCATAAAA-AATTGTTCA-GTTCATA-AAGGCTT-TTTTGAAATAAAATAATAT-
* * ** * * * * *
80466 AATTTACTAATATTCTAAGGACTGATAAGTAAAAATTTAAAAAATAAATCTA
125 AATTTATTAATATTCAAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTG
* * * *
80518 TTTTCTAAACACGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGATC
1 TTTACCAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGATC
* ** * *
80583 TTTT-TTTATCATACACCAATTGTTTCTA-TTCATAAATGGCTTATTT-AGAATAAAATATTATT
66 TTTTGTTTGTCATA-AAAAATTG-TTC-AGTTCATAAA-GGCTTTTTTGA-AATAAAATAATA-T
* *
80645 AATTTATTAAAATTCAAAAAATTAATAACTTAAAGATTTAAAAAATAAATTTG
125 AATTTATTAATATTCAAAAAATTAATAA-GTAAAGATTTAAAAAATAAATTTG
* * * * * * *
80698 TTTATCGAGCGAA-TTTAAATAGTTATGACTACTTAAATAATTATTTTATTTCAAATTGTTATGA
1 TTTACCAAAC-AAGTTCAAATAGTTATGACTATTTAAATAATTA-TCTATTTCAAATCGTTATGA
*
80762 TATTTTG
64 TCTTTTG
80769 ATTTTACTCA
Statistics
Matches: 487, Mismatches: 94, Indels: 54
0.77 0.15 0.09
Matches are distributed among these distances:
176 2 0.00
177 16 0.03
178 19 0.04
179 243 0.50
180 173 0.36
181 34 0.07
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (176 bp):
TTTACCAAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATCGTTATGATC
TTTTGTTTGTCATAAAAAATTGTTCAGTTCATAAAGGCTTTTTTGAAATAAAATAATATAATTTA
TTAATATTCAAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTG
Found at i:80654 original size:359 final size:359
Alignment explanation
Indices: 79980--80753 Score: 915
Period size: 359 Copynumber: 2.2 Consensus size: 359
79970 TTCAAATCTA
* * * *
79980 TTTACCGAATAAGTTGAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACC
1 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCATTAAGACC
* * * * * *
80045 TTTTGTTTTGTCATAAAACATTATTTTTATTCATAAAAGCTTATTCAGATTAAAATAATGTTAAT
66 TTTTATTTTGTCATAAAACATAATTGTTATTCATAAAAGCTTATTCAGAATAAAATAATATAAAT
* * * * *
80110 TTATTAATATTTCAATAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTATCAAATAAATT
131 TTACTAATATTTCAAGAACTAATAAGTAAAAGATTTAAAAAATAAATATATTTATCAAACAAATT
* * *
80175 CAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGTTTTGATCTTTTGTTTCGTCAAA
196 CAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATCGTTATGATCTTTTGTTTCATCAAA
* * * *
80240 AAAAATGTATCAGTTTATATAGGCTTTTTTGAAATAAAACAATACTAACTTATTAATATTCAAAA
261 AAAAATGTATCAGTTCATAAAGGCTTTTTAGAAATAAAACAATACTAACTTATTAAAATTCAAAA
* *
80305 AATTAATGA-GTAAGAGATTTAAAAAATGAATTTG
326 AATTAATAACGTAA-AGATTTAAAAAATAAATTTG
*
80339 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTAAGACC
1 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCATTAAGACC
*
80404 TTTTATTTTGTCAT-AAA-ATAATTGTTACGTTCATACAAGCTTATTTC-GAATAAAATAATATA
66 TTTTATTTTGTCATAAAACATAATTGTTA--TTCATAAAAGCTTA-TTCAGAATAAAATAATATA
* * *
80466 AATTTACTAATA-TTCTAAGGACTGATAAGTAAAA-ATTTAAAAAATAAATCTATTT-TCTAAAC
128 AATTTACTAATATTTC-AAGAACTAATAAGTAAAAGATTTAAAAAATAAATATATTTATC-AAAC
** * * *
80528 ACGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGATCTTTT-TTT-A
191 AAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATCGTTATGATCTTTTGTTTCA
** * * * * * *
80591 TCATACACCAATTGTTTCTA-TTCATAAATGGCTTATTTAG-AATAAAATATTATTAATTTATTA
256 TCA-A-AAAAAATGTATC-AGTTCATAAA-GGCTT-TTTAGAAATAAAACAATACTAACTTATTA
*
80654 AAATTCAAAAAATTAATAACTTAAAGATTTAAAAAATAAATTTG
316 AAATTCAAAAAATTAATAACGTAAAGATTTAAAAAATAAATTTG
* * * * *
80698 TTTATCGAGCGAA-TTTAAATAGTTATGACTACTTAAATAATTATTTTATTTCAAAT
1 TTTACCGAAC-AAGTTCAAATAGTTATGACTATTTGAATAATTA-TTTATTTCAAAT
80754 TGTTATGATA
Statistics
Matches: 353, Mismatches: 49, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
356 3 0.01
357 14 0.04
358 94 0.27
359 219 0.62
360 23 0.07
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (359 bp):
TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCATTAAGACC
TTTTATTTTGTCATAAAACATAATTGTTATTCATAAAAGCTTATTCAGAATAAAATAATATAAAT
TTACTAATATTTCAAGAACTAATAAGTAAAAGATTTAAAAAATAAATATATTTATCAAACAAATT
CAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATCGTTATGATCTTTTGTTTCATCAAA
AAAAATGTATCAGTTCATAAAGGCTTTTTAGAAATAAAACAATACTAACTTATTAAAATTCAAAA
AATTAATAACGTAAAGATTTAAAAAATAAATTTG
Found at i:81145 original size:176 final size:178
Alignment explanation
Indices: 80776--81145 Score: 464
Period size: 177 Copynumber: 2.1 Consensus size: 178
80766 TTGATTTTAC
*
80776 TCAAAATAAGATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAATAATA
1 TCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAA--TGGAGATTTAAATAATA
* * *
80841 AATATGTTTACCGAACAAGTTCAAATAGTCATGTCAATTTAAACTATTATCTATTTCAAATCATT
64 AATATGTTTACCGAACAAGTTCAAATAATCATGACAATTTAAACTATTATCTATTTCAAATCAGT
*
80906 AGGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAAATTAT
129 AGGACA-TTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
* *
80957 TCAAAATAAAATAATACTATTTTATTAATATTTTAAAAATTAAT-A-GGAGATTTAAA-AACTAA
1 TCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAATGGAGATTTAAATAA-TAA
* * * * * **
81019 ATCTGTTTACCAGATC-AGTTCAAATAATTATGACTATTTGAA-TAGTTATCTATTTCAAATTGG
65 ATATGTTTACC-GAACAAGTTCAAATAATCATGACAATTTAAACTA-TTATCTATTTCAAATCAG
* * * *
81082 TATGATC-TTTGTTTTATCATAAAATAATTGTTTCTATTCATATAAACTTAT
128 TAGGA-CATTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
*
81133 TCAAAGTAAAATA
1 TCAAAATAAAATA
81146 TTGCTAAACT
Statistics
Matches: 166, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
176 56 0.34
177 64 0.39
178 4 0.02
180 1 0.01
181 41 0.25
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
TCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAATGGAGATTTAAATAATAAA
TATGTTTACCGAACAAGTTCAAATAATCATGACAATTTAAACTATTATCTATTTCAAATCAGTAG
GACATTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
Found at i:81164 original size:176 final size:178
Alignment explanation
Indices: 80776--81165 Score: 432
Period size: 176 Copynumber: 2.2 Consensus size: 178
80766 TTGATTTTAC
* ** *
80776 TCAAAATAAGATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAATAATA
1 TCAAAATAAAATAATACTAAACTAATAATATTCTAAAAATTAATAA--TGGAGATTTAAATAATA
* * *
80841 AATATGTTTACCGAACAAGTTCAAATAGTCATGTCAATTTAAACTATTATCTATTTCAAATCATT
64 AATATGTTTACCGAACAAGTTCAAATAATCATGACAATTTAAACTATTATCTATTTCAAATCAGT
*
80906 AGGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAAATTAT
129 AGGACA-TTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
*** * *
80957 TCAAAATAAAATAATACTATTTTATTAATATTTTAAAAATTAAT-A-GGAGATTTAAA-AACTAA
1 TCAAAATAAAATAATACTAAACTAATAATATTCTAAAAATTAATAATGGAGATTTAAATAA-TAA
* * * * * **
81019 ATCTGTTTACCAGATC-AGTTCAAATAATTATGACTATTTGAA-TAGTTATCTATTTCAAATTGG
65 ATATGTTTACC-GAACAAGTTCAAATAATCATGACAATTTAAACTA-TTATCTATTTCAAATCAG
* * * *
81082 TATGATC-TTTGTTTTATCATAAAATAATTGTTTCTATTCATATAAACTTAT
128 TAGGA-CATTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
* * *
81133 TCAAAGTAAAATATTGCTAAACTAATAATATTC
1 TCAAAATAAAATAATACTAAACTAATAATATTC
81166 CATAACTTTT
Statistics
Matches: 179, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
176 69 0.39
177 64 0.36
178 4 0.02
180 1 0.01
181 41 0.23
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
TCAAAATAAAATAATACTAAACTAATAATATTCTAAAAATTAATAATGGAGATTTAAATAATAAA
TATGTTTACCGAACAAGTTCAAATAATCATGACAATTTAAACTATTATCTATTTCAAATCAGTAG
GACATTTGTTTTATCATAAAACAATTGTTTCTATTCATACAAAATTAT
Found at i:81239 original size:14 final size:15
Alignment explanation
Indices: 81220--81253 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
81210 AATAATTTTA
81220 CTATTAATTAT-AAT
1 CTATTAATTATCAAT
81234 CTATTAATTATCAAT
1 CTATTAATTATCAAT
81249 -TATTA
1 CTATTA
81254 CTAATAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (15 bp):
CTATTAATTATCAAT
Found at i:81403 original size:28 final size:29
Alignment explanation
Indices: 81355--81418 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 29
81345 ATAATTCATT
* * *
81355 TTAATA-ATATTATTATTTATAATTACTA
1 TTAATATATAATATTATATATAAATACTA
**
81383 TTAATATATAATATT-TATATAAATGTTA
1 TTAATATATAATATTATATATAAATACTA
81411 TTAATATA
1 TTAATATA
81419 ACTTAAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 23 0.77
29 7 0.23
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (29 bp):
TTAATATATAATATTATATATAAATACTA
Found at i:82206 original size:18 final size:17
Alignment explanation
Indices: 82175--82208 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
82165 ACTATCAATA
82175 AATTAAATTAAATTTTT
1 AATTAAATTAAATTTTT
*
82192 AATTATAATTTAATTTT
1 AATTA-AATTAAATTTT
82209 ATCTATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTAAATTAAATTTTT
Found at i:84298 original size:41 final size:41
Alignment explanation
Indices: 84234--84362 Score: 188
Period size: 41 Copynumber: 3.2 Consensus size: 41
84224 TTGACGAGCC
*
84234 TTTATTTTTCAAAGTTGTTGTGCCTTTGTTTAGAGGAGCAT
1 TTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCAT
* * * *
84275 TTTATTTTTCAAAGCTGTGGTGCCTCTATTTAGAGAAGCA-
1 TTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCAT
* *
84315 TTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGGGGAGCCT
1 TTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCAT
84356 TTTATTT
1 TTTATTT
84363 ATTTTTCCAA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
40 34 0.45
41 42 0.55
ACGTcount: A:0.19, C:0.12, G:0.22, T:0.47
Consensus pattern (41 bp):
TTTATTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCAT
Found at i:84806 original size:25 final size:25
Alignment explanation
Indices: 84758--84806 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
84748 TAATTAATGT
* *
84758 TAATATATATAATTATTTATATAAA
1 TAATATATAAAATTATATATATAAA
84783 TAATATATTAAAATTATATA-ATAA
1 TAATATA-TAAAATTATATATATAA
84807 TAAATTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
TAATATATAAAATTATATATATAAA
Found at i:84899 original size:20 final size:20
Alignment explanation
Indices: 84821--84901 Score: 58
Period size: 20 Copynumber: 4.0 Consensus size: 20
84811 TTGATTTGAA
**
84821 ATATTAATGTTAATTATAATT
1 ATATTAATAATAATTATAA-T
* *
84842 TTATAAATAA-AATTAT-AT
1 ATATTAATAATAATTATAAT
* *
84860 AATATTAACTATTTATTTATAAT
1 -ATATTAA-TA-ATAATTATAAT
84883 ATATTAATAATAATTATAA
1 ATATTAATAATAATTATAA
84902 ATCAATTAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 11
0.68 0.15 0.17
Matches are distributed among these distances:
18 1 0.02
19 6 0.13
20 16 0.36
21 8 0.18
22 12 0.27
23 2 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
ATATTAATAATAATTATAAT
Found at i:85053 original size:27 final size:27
Alignment explanation
Indices: 85023--85100 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
85013 CAATTATAAC
*
85023 TTAATAAATAATATTATAAATTGCTTA
1 TTAATAAATAATATTATAAATTACTTA
* * *
85050 TTAAT-AATAAATATAATACATATATTTA
1 TTAATAAAT-AATATTATAAAT-TACTTA
*
85078 TTAATATATAA-ATTATTAAATTA
1 TTAATAAATAATATTA-TAAATTA
85101 TTGTAATATA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
26 3 0.08
27 20 0.50
28 15 0.38
29 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
TTAATAAATAATATTATAAATTACTTA
Found at i:85323 original size:325 final size:325
Alignment explanation
Indices: 84976--85616 Score: 1282
Period size: 325 Copynumber: 2.0 Consensus size: 325
84966 TAATTCATAT
84976 TAATATTATAATATTAATATAACTATAAGTAAATTAACAATTATAACTTAATAAATAATATTATA
1 TAATATTATAATATTAATATAACTATAAGTAAATTAACAATTATAACTTAATAAATAATATTATA
85041 AATTGCTTATTAATAATAAATATAATACATATATTTATTAATATATAAATTATTAAATTATTGTA
66 AATTGCTTATTAATAATAAATATAATACATATATTTATTAATATATAAATTATTAAATTATTGTA
85106 ATATAATAACAATATTATATTACTAATATTGTAAATAAAGTAACTTTATATAATTATATAAATTC
131 ATATAATAACAATATTATATTACTAATATTGTAAATAAAGTAACTTTATATAATTATATAAATTC
85171 TATATTAAATTAATATTATACTTTAATTGTAAAACTTGTATAATGAACATTTAAATGACAAACAA
196 TATATTAAATTAATATTATACTTTAATTGTAAAACTTGTATAATGAACATTTAAATGACAAACAA
85236 TATTAAATAATTATTATAATATATGCTCTAGACAATTTTTAATTTAATAATTATATTTAATAAAA
261 TATTAAATAATTATTATAATATATGCTCTAGACAATTTTTAATTTAATAATTATATTTAATAAAA
85301 TAATATTATAATATTAATATAACTATAAGTAAATTAACAATTATAACTTAATAAATAATATTATA
1 TAATATTATAATATTAATATAACTATAAGTAAATTAACAATTATAACTTAATAAATAATATTATA
85366 AATTGCTTATTAATAATAAATATAATACATATATTTATTAATATATAAATTATTAAATTATTGTA
66 AATTGCTTATTAATAATAAATATAATACATATATTTATTAATATATAAATTATTAAATTATTGTA
85431 ATATAATAACAATATTATATTACTAATATTGTAAATAAAGTAACTTTATATAATTATATAAATTC
131 ATATAATAACAATATTATATTACTAATATTGTAAATAAAGTAACTTTATATAATTATATAAATTC
85496 TATATTAAATTAATATTATACTTTAATTGTAAAACTTGTATAATGAACATTTAAATGACAAACAA
196 TATATTAAATTAATATTATACTTTAATTGTAAAACTTGTATAATGAACATTTAAATGACAAACAA
85561 TATTAAATAATTATTATAATATATGCTCTAGACAATTTTTAATTTAATAATTATAT
261 TATTAAATAATTATTATAATATATGCTCTAGACAATTTTTAATTTAATAATTATAT
85617 AAAATTGTTA
Statistics
Matches: 316, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
325 316 1.00
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (325 bp):
TAATATTATAATATTAATATAACTATAAGTAAATTAACAATTATAACTTAATAAATAATATTATA
AATTGCTTATTAATAATAAATATAATACATATATTTATTAATATATAAATTATTAAATTATTGTA
ATATAATAACAATATTATATTACTAATATTGTAAATAAAGTAACTTTATATAATTATATAAATTC
TATATTAAATTAATATTATACTTTAATTGTAAAACTTGTATAATGAACATTTAAATGACAAACAA
TATTAAATAATTATTATAATATATGCTCTAGACAATTTTTAATTTAATAATTATATTTAATAAAA
Found at i:85378 original size:27 final size:27
Alignment explanation
Indices: 85348--85425 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
85338 CAATTATAAC
*
85348 TTAATAAATAATATTATAAATTGCTTA
1 TTAATAAATAATATTATAAATTACTTA
* * *
85375 TTAAT-AATAAATATAATACATATATTTA
1 TTAATAAAT-AATATTATAAAT-TACTTA
*
85403 TTAATATATAA-ATTATTAAATTA
1 TTAATAAATAATATTA-TAAATTA
85426 TTGTAATATA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
26 3 0.08
27 20 0.50
28 15 0.38
29 2 0.05
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
TTAATAAATAATATTATAAATTACTTA
Found at i:86007 original size:30 final size:29
Alignment explanation
Indices: 85951--86007 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
85941 ATTATTAAAT
*
85951 ATAATAATATTATATTTTAATATAATTGA
1 ATAATAATATTATATTATAATATAATTGA
*
85980 ATAATAACTATTA-ATTAATAATTTAATT
1 ATAATAA-TATTATATT-ATAATATAATT
86008 AGTATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
ATAATAATATTATATTATAATATAATTGA
Found at i:86290 original size:10 final size:11
Alignment explanation
Indices: 86275--86347 Score: 50
Period size: 10 Copynumber: 7.0 Consensus size: 11
86265 TTAATTTAGT
86275 AATAATTA-TA
1 AATAATTATTA
86285 AATAATTATTA
1 AATAATTATTA
*
86296 AAT--TTATATT
1 AATAATTAT-TA
*
86306 ATTAATTATT-
1 AATAATTATTA
86316 AATAATATATTA
1 AATAAT-TATTA
* *
86328 TATACTTATT-
1 AATAATTATTA
86338 AAT-ATTATTA
1 AATAATTATTA
86348 TGCTATTACT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
9 9 0.18
10 18 0.37
11 14 0.29
12 8 0.16
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (11 bp):
AATAATTATTA
Found at i:86311 original size:21 final size:23
Alignment explanation
Indices: 86286--86339 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 23
86276 ATAATTATAA
*
86286 ATAATTATTAAAT-TTATATTAT
1 ATAATTATTAAATAATATATTAT
86308 -TAATTATT-AATAATATATTAT
1 ATAATTATTAAATAATATATTAT
*
86329 ATACTTATTAA
1 ATAATTATTAA
86340 TATTATTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.11
21 16 0.59
22 7 0.26
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATAATTATTAAATAATATATTAT
Found at i:86328 original size:35 final size:31
Alignment explanation
Indices: 86239--86328 Score: 90
Period size: 32 Copynumber: 2.7 Consensus size: 31
86229 TAATTCAAAA
*
86239 TAGTAATTATTATAAGATATTAGTAATTAATT
1 TAGTAATTATTATAA-ATATTATTAATTAATT
* *
86271 TAGTAATAATTATAAATAATTATTAAATTTATAT
1 TAGTAATTATTATAAAT-ATTATT-AATTAAT-T
*
86305 TATTAATTATTAATAATATATTAT
1 TAGTAATTATT-ATAA-ATATTAT
86329 ATACTTATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
31 2 0.04
32 19 0.40
33 6 0.12
34 10 0.21
35 9 0.19
36 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (31 bp):
TAGTAATTATTATAAATATTATTAATTAATT
Found at i:86829 original size:24 final size:22
Alignment explanation
Indices: 86794--86838 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
86784 TAAAATAAAC
86794 ATTAAATAAATATAT-AATTAAT
1 ATTAAATAAATA-ATCAATTAAT
86816 ATTAAATTAGAATAATCAATTAA
1 ATTAAA-TA-AATAATCAATTAA
86839 GTCATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAAATAAATAATCAATTAAT
Found at i:87205 original size:15 final size:15
Alignment explanation
Indices: 87185--87238 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
87175 ATTTAACAAT
87185 TTAATATATTTAATA
1 TTAATATATTTAATA
*
87200 TTAATATAATTAATA
1 TTAATATATTTAATA
*
87215 TT-ATATTTTTGAATA
1 TTAATATATTT-AATA
87230 -TAATA-ATTT
1 TTAATATATTT
87239 TAAATAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 10 0.30
15 23 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TTAATATATTTAATA
Done.