Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171922
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
File 3 of 5
Found at i:87334 original size:17 final size:17
Alignment explanation
Indices: 87312--87362 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
87302 AAAATATTAT
87312 TTAATTATTAAATATAA
1 TTAATTATTAAATATAA
87329 TTAATTAAATTAAAT-TAA
1 TTAATT--ATTAAATATAA
* *
87347 ATATTCTATTAAATAT
1 TTAAT-TATTAAATAT
87363 TTAATAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
17 13 0.46
18 7 0.25
19 8 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAATTATTAAATATAA
Found at i:87436 original size:15 final size:16
Alignment explanation
Indices: 87418--87457 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
87408 TCTTAATTCT
87418 TATTTAATTAA-TAAA
1 TATTTAATTAACTAAA
*
87433 TATTTAATTAACTATA
1 TATTTAATTAACTAAA
87449 TATATTAAT
1 TAT-TTAAT
87458 AAATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 6 0.27
17 5 0.23
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTAATTAACTAAA
Found at i:87475 original size:14 final size:12
Alignment explanation
Indices: 87451--87523 Score: 71
Period size: 12 Copynumber: 6.0 Consensus size: 12
87441 TAACTATATA
87451 TATT-AATAAATT
1 TATTAAATAAA-T
87463 TATTAATATAAAT
1 TATTAA-ATAAAT
87476 TATTAAATAATTAT
1 TATTAAATAA--AT
*
87490 TTTTAAA-AAAT
1 TATTAAATAAAT
*
87501 AATTAAATAAAT
1 TATTAAATAAAT
87513 TATT-AATAAAT
1 TATTAAATAAAT
87524 ATAATTTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
11 14 0.27
12 15 0.29
13 10 0.19
14 13 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TATTAAATAAAT
Found at i:87479 original size:25 final size:27
Alignment explanation
Indices: 87431--87520 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 27
87421 TTAATTAATA
*
87431 AATATTTAATTAACTATATA-TATT-AAT
1 AATATTT-ATTAA-TATAAATTATTAAAT
87458 AA-ATTTATTAATATAAATTATTAAAT
1 AATATTTATTAATATAAATTATTAAAT
*
87484 AATTATTT-TTAA-A-AAATAATTAAAT
1 AA-TATTTATTAATATAAATTATTAAAT
87509 AA-A-TTATTAATA
1 AATATTTATTAATA
87521 AATATAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
22 2 0.04
23 5 0.09
24 6 0.11
25 22 0.40
26 10 0.18
27 6 0.11
28 4 0.07
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (27 bp):
AATATTTATTAATATAAATTATTAAAT
Found at i:87527 original size:25 final size:24
Alignment explanation
Indices: 87455--87529 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 24
87445 TATATATATT
*
87455 AATAAATTTATTAATATAAATTATTA
1 AATAAA-TTATTAATA-AAATAATTA
*
87481 AATAATTATTTTTAA-AAAATAATTA
1 AATAA--ATTATTAATAAAATAATTA
87506 AATAAATTATTAATAAATATAATT
1 AATAAATTATTAATAAA-ATAATT
87530 TATTATTGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
23 7 0.17
24 3 0.07
25 19 0.45
26 6 0.14
27 6 0.14
28 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
AATAAATTATTAATAAAATAATTA
Found at i:87782 original size:26 final size:25
Alignment explanation
Indices: 87740--87788 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
87730 AAATATCAAT
87740 ATTAAATTATTAATATTACTAATAA
1 ATTAAATTATTAATATTACTAATAA
*
87765 ATTATAATTA-TAATTATTATTAAT
1 ATTA-AATTATTAA-TATTACTAAT
87789 TATTTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTAAATTATTAATATTACTAATAA
Found at i:87860 original size:26 final size:27
Alignment explanation
Indices: 87800--87862 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
87790 ATTTTATATA
*
87800 AATAATT-TA-TATTTACTAATATAAAT
1 AATAATTATATTATTTAC-AATATAAAC
* *
87826 AGTATTTATATTATTTA-AATATAAAC
1 AATAATTATATTATTTACAATATAAAC
87852 AATAATTATAT
1 AATAATTATAT
87863 ATTATCTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 22 0.73
27 2 0.07
28 6 0.20
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (27 bp):
AATAATTATATTATTTACAATATAAAC
Found at i:88091 original size:20 final size:19
Alignment explanation
Indices: 88037--88096 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 19
88027 AAATAACATT
*
88037 TTAAATTAATTATT-TAAT
1 TTAAATTAATTATTATAAG
*
88055 TTATATTAA-TATATATAAGG
1 TTAAATTAATTAT-TATAA-G
88075 TTAAATTAATTATTATAA-
1 TTAAATTAATTATTATAAG
88093 TTAA
1 TTAA
88097 TAATTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
17 3 0.09
18 13 0.37
19 3 0.09
20 13 0.37
21 3 0.09
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTAAATTAATTATTATAAG
Found at i:88176 original size:14 final size:14
Alignment explanation
Indices: 88158--88186 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
88148 TTAAATTTTA
88158 ATTTTTATTAT-AT
1 ATTTTTATTATGAT
88171 ATTTTTATTATGAT
1 ATTTTTATTATGAT
88185 AT
1 AT
88187 ATAGTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (14 bp):
ATTTTTATTATGAT
Found at i:88349 original size:21 final size:21
Alignment explanation
Indices: 88330--88374 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
88320 TAATCAATTT
88330 TATTAATTAATAAATAAATTAA
1 TATTAA-TAATAAATAAATTAA
*
88352 TATTAATAATAACTAAATTAA
1 TATTAATAATAAATAAATTAA
88373 TA
1 TA
88375 ACTAAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TATTAATAATAAATAAATTAA
Found at i:88361 original size:25 final size:24
Alignment explanation
Indices: 88316--88369 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
88306 TTAAATTAGT
* *
88316 TAAATAATCAATTTTATTAATTAA-
1 TAAATAATCAATATTAATAA-TAAC
*
88340 TAAATAAATTAATATTAATAATAAC
1 TAAAT-AATCAATATTAATAATAAC
88365 TAAAT
1 TAAAT
88370 TAATAACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (24 bp):
TAAATAATCAATATTAATAATAAC
Found at i:88388 original size:12 final size:12
Alignment explanation
Indices: 88334--88388 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
88324 CAATTTTATT
*
88334 AATTAATAAATA
1 AATTAATAACTA
*
88346 AATTAAT-A-TT
1 AATTAATAACTA
88356 AA-TAATAACTA
1 AATTAATAACTA
88367 AATTAATAACTA
1 AATTAATAACTA
88379 AATTAATAAC
1 AATTAATAAC
88389 ATTAATTGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
9 4 0.11
10 4 0.11
11 4 0.11
12 26 0.68
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (12 bp):
AATTAATAACTA
Found at i:90185 original size:16 final size:18
Alignment explanation
Indices: 90164--90200 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
90154 TAATTAAATT
90164 AATTAATAAAT-TTAA-A
1 AATTAATAAATGTTAATA
90180 AATTAATAAATGTTAATA
1 AATTAATAAATGTTAATA
90198 AAT
1 AAT
90201 ATATTTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.58
17 4 0.21
18 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
AATTAATAAATGTTAATA
Found at i:90805 original size:52 final size:52
Alignment explanation
Indices: 90749--90862 Score: 107
Period size: 52 Copynumber: 2.2 Consensus size: 52
90739 ATAAATAGTC
90749 ATAATTATTAATTTTTAATAACTATATAATATTATAATTAAATATATTATAT-
1 ATAATTATTAATTTTTAATAACTATATAATA-TATAATTAAATATATTATATA
* ** *
90801 ATAA-TATATAATTATTAAATAAAAAT-TAATATATAATT-TATA-ATTAT-T-
1 ATAATTAT-TAATT-TTTAATAACTATATAATATATAATTAAATATATTATATA
90849 ATAATTAATTAATT
1 ATAATT-ATTAATT
90863 ATAATAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
48 5 0.09
49 11 0.20
50 5 0.09
51 10 0.19
52 14 0.26
53 9 0.17
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (52 bp):
ATAATTATTAATTTTTAATAACTATATAATATATAATTAAATATATTATATA
Found at i:90810 original size:7 final size:7
Alignment explanation
Indices: 90766--90844 Score: 62
Period size: 7 Copynumber: 11.7 Consensus size: 7
90756 TTAATTTTTA
90766 ATAACTAT
1 ATAA-TAT
90774 ATAATATT
1 ATAATA-T
90782 ATAAT-T
1 ATAATAT
90788 A-AATAT
1 ATAATAT
*
90794 ATTATAT
1 ATAATAT
90801 ATAATAT
1 ATAATAT
90808 ATAAT-T
1 ATAATAT
90814 ATTAA-AT
1 A-TAATAT
*
90821 A-AAAAT
1 ATAATAT
90827 -TAATAT
1 ATAATAT
*
90833 ATAATTT
1 ATAATAT
90840 ATAAT
1 ATAAT
90845 TATTATAATT
Statistics
Matches: 59, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
5 5 0.08
6 12 0.20
7 32 0.54
8 10 0.17
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (7 bp):
ATAATAT
Found at i:90811 original size:34 final size:34
Alignment explanation
Indices: 90766--90869 Score: 128
Period size: 32 Copynumber: 3.1 Consensus size: 34
90756 TTAATTTTTA
90766 ATAACTATATAA-TATTATAATTAAATATATTATAT
1 ATAA-TATATAATTATTATAATTAAATA-ATTATAT
90801 ATAATATATAATTATTA-AA-TAAA-AATTAATAT
1 ATAATATATAATTATTATAATTAAATAATT-ATAT
* *
90833 ATAATTTATAATTATTATAATTAATTAATTATA-
1 ATAATATATAATTATTATAATTAAATAATTATAT
90866 ATAA
1 ATAA
90870 ATTAGCATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
31 3 0.05
32 21 0.34
33 10 0.16
34 15 0.24
35 13 0.21
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (34 bp):
ATAATATATAATTATTATAATTAAATAATTATAT
Found at i:90844 original size:14 final size:14
Alignment explanation
Indices: 90773--90867 Score: 51
Period size: 14 Copynumber: 6.9 Consensus size: 14
90763 TTAATAACTA
90773 TATAATATTATAA-T
1 TATAATA-TATAATT
* *
90787 TA-AATATATTATA
1 TATAATATATAATT
90800 TATAATATATAA-T
1 TATAATATATAATT
**
90813 TATTAA-ATA-AAAA
1 TA-TAATATATAATT
90826 T-TAATATATAATT
1 TATAATATATAATT
90839 TATAATTATTATAATT
1 TATAA-TA-TATAATT
*
90855 AATTAAT-TATAAT
1 TA-TAATATATAAT
90868 AAATTAGCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
11 3 0.05
12 9 0.14
13 15 0.24
14 22 0.35
15 2 0.03
16 9 0.14
17 3 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAATATATAATT
Found at i:90872 original size:14 final size:14
Alignment explanation
Indices: 90819--90988 Score: 52
Period size: 14 Copynumber: 11.5 Consensus size: 14
90809 TAATTATTAA
90819 ATAA-AAATTAATAT
1 ATAATAAATTAAT-T
90833 ATAATTTATAATT-ATT
1 ATAA--TA-AATTAATT
*
90849 ATAATTAATTAATT
1 ATAATAAATTAATT
90863 ATAATAAATTAGCATT
1 ATAATAAATTA--ATT
* **
90879 AATTATTTTATTAA-T
1 -A-TAATAAATTAATT
90894 ATTAATAAATATAATT
1 A-TAATAAAT-TAATT
90910 AT-AT-AATTATATT
1 ATAATAAATTA-ATT
*
90923 -T-ATAAAATAATAT
1 ATAATAAATTAAT-T
*
90936 ATTAA-AGATATTAATA
1 A-TAATA-A-ATTAATT
90952 ATAATTATAATT-ATT
1 ATAA-TA-AATTAATT
*
90967 ATTTATAAATTAATT
1 A-TAATAAATTAATT
90982 ATAATAA
1 ATAATAA
90989 GAGTTATAAT
Statistics
Matches: 118, Mismatches: 15, Indels: 46
0.66 0.08 0.26
Matches are distributed among these distances:
12 7 0.06
13 15 0.13
14 36 0.31
15 19 0.16
16 19 0.16
17 11 0.09
18 11 0.09
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (14 bp):
ATAATAAATTAATT
Found at i:90911 original size:27 final size:25
Alignment explanation
Indices: 90878--90983 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 25
90868 AAATTAGCAT
*
90878 TAATTATTTTATTAATATTAATAAATA
1 TAATTATTTAATT-ATATTAATAAA-A
* *
90905 TAATTATATAATTATATTTATAAAA
1 TAATTATTTAATTATATTAATAAAA
**
90930 TAA-TATATTAAAGATATTAAT--AA
1 TAATTAT-TTAATTATATTAATAAAA
* *
90953 TAATTA--TAATTATTATTTATAAAT
1 TAATTATTTAATTA-TATTAATAAAA
90977 TAATTAT
1 TAATTAT
90984 AATAAGAGTT
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
21 4 0.06
22 6 0.10
23 5 0.08
24 12 0.19
25 14 0.23
26 10 0.16
27 11 0.18
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
TAATTATTTAATTATATTAATAAAA
Found at i:90939 original size:48 final size:43
Alignment explanation
Indices: 90886--90987 Score: 100
Period size: 47 Copynumber: 2.2 Consensus size: 43
90876 ATTAATTATT
90886 TTATTAATATTAATAAATATAATTATATAATTA-TATTTATAAAATAA
1 TTATTAATATTAAT--A-ATAA-T-TATAATTATTATTTATAAAATAA
*
90933 TATATTAAAGATATTAATAATAATTATAATTATTATTTATAAATTAA
1 T-TATT--A-ATATTAATAATAATTATAATTATTATTTATAAAATAA
90980 TTA-TAATA
1 TTATTAATA
90988 AGAGTTATAA
Statistics
Matches: 49, Mismatches: 1, Indels: 15
0.75 0.02 0.23
Matches are distributed among these distances:
42 3 0.06
43 1 0.02
45 1 0.02
46 10 0.20
47 16 0.33
48 8 0.16
49 1 0.02
50 1 0.02
51 8 0.16
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (43 bp):
TTATTAATATTAATAATAATTATAATTATTATTTATAAAATAA
Found at i:90980 original size:24 final size:24
Alignment explanation
Indices: 90825--90986 Score: 83
Period size: 24 Copynumber: 6.8 Consensus size: 24
90815 TTAAATAAAA
*
90825 ATTAATATA-TAATTTATAATTATT
1 ATTAATAAATTAA-TTATAATTATT
* *
90849 A-TAATTAATTAATTATAA-TA-A
1 ATTAATAAATTAATTATAATTATT
* * *
90870 ATTAGCATTAATT-ATT-TTATTAAT
1 ATTA--ATAAATTAATTATAATTATT
90894 ATTAATAAATATAATTATATAATTA-T
1 ATTAATAAAT-TAA-T-TATAATTATT
* * **
90920 ATTTATAAAATAATATATTAAAGA-T
1 ATTAATAAATTAAT-TA-TAATTATT
90945 ATTAAT-AA-TAATTATAATTATT
1 ATTAATAAATTAATTATAATTATT
*
90967 ATTTATAAATTAATTATAAT
1 ATTAATAAATTAATTATAAT
90987 AAGAGTTATA
Statistics
Matches: 108, Mismatches: 15, Indels: 30
0.71 0.10 0.20
Matches are distributed among these distances:
21 5 0.05
22 19 0.18
23 23 0.21
24 32 0.30
25 14 0.13
26 10 0.09
27 5 0.05
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (24 bp):
ATTAATAAATTAATTATAATTATT
Found at i:91133 original size:22 final size:20
Alignment explanation
Indices: 91105--91197 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 20
91095 TATTTTAAAG
91105 ATTATAATTATAATTAATTAAT
1 ATTATAA-TATAATTAATT-AT
*
91127 ATTATAATATTTATTATACTT-T
1 ATTATAATA-TAATTA-A-TTAT
*
91149 ATAATAATATAAATTAATTAATT
1 ATTATAATAT-AATTAATT-A-T
91172 ATTATTAATATAA-TAATTAT
1 ATTA-TAATATAATTAATTAT
91192 ATTATA
1 ATTATA
91198 TTTCTTAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
19 2 0.03
20 7 0.12
21 5 0.08
22 30 0.51
23 7 0.12
24 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTATAATATAATTAATTAT
Found at i:91243 original size:47 final size:44
Alignment explanation
Indices: 91179--91276 Score: 110
Period size: 47 Copynumber: 2.2 Consensus size: 44
91169 ATTATTATTA
*
91179 ATATAATAATTATATTAT-ATT-TCTTAATATATAATTATAACTTAAT
1 ATATAATAATTAAATTATAATTAT-TTAATA-ATAATTATAA--TAAT
* *
91225 ATATAATCAATTAAATTATAATTATTTTATAATAATTATTATAAT
1 ATATAAT-AATTAAATTATAATTATTTAATAATAATTATAATAAT
91270 ATATAAT
1 ATATAAT
91277 TATACAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
45 11 0.24
46 7 0.15
47 19 0.41
48 8 0.17
49 1 0.02
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (44 bp):
ATATAATAATTAAATTATAATTATTTAATAATAATTATAATAAT
Found at i:91470 original size:19 final size:20
Alignment explanation
Indices: 91448--91486 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
91438 ATTTAAATGT
91448 TAATTATATTA-TTAACTTA
1 TAATTATATTATTTAACTTA
*
91467 TAATTATGTTATTTAACTTA
1 TAATTATATTATTTAACTTA
91487 GTTATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
TAATTATATTATTTAACTTA
Found at i:91574 original size:5 final size:5
Alignment explanation
Indices: 91564--91612 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
91554 TTAATTATTA
* * * *
91564 ATAAT ATAAT ATAAT ATAAT ATAAT -TAAT ACATT ATATT ATATT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
91613 TATATAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
4 4 0.10
5 35 0.90
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (5 bp):
ATAAT
Found at i:91600 original size:24 final size:24
Alignment explanation
Indices: 91537--91614 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
91527 AATCTCATAT
* *
91537 TAATAAATACATTTTAAT-TAATTA
1 TAATTAATACATTATAATATAA-TA
* *
91561 TTAA-TAATATAATATAATATAATA
1 -TAATTAATACATTATAATATAATA
* *
91585 TAATTAATACATTATATTATATTA
1 TAATTAATACATTATAATATAATA
91609 TAATTA
1 TAATTA
91615 TATAAATAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.07
24 34 0.79
25 6 0.14
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (24 bp):
TAATTAATACATTATAATATAATA
Found at i:91600 original size:29 final size:28
Alignment explanation
Indices: 91559--91644 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 28
91549 TTTAATTAAT
91559 TATTAATAA-TATAATATAATATAA-TA
1 TATTAATAATTATAATATAATATAATTA
* *
91585 TAATTAATACATTATATTATATTATAATTA
1 T-ATTAATA-ATTATAATATAATATAATTA
* *
91615 TATAAATAGATTAT-AT-TAAT-TAAATA
1 TATTAATA-ATTATAATATAATATAATTA
91641 TATT
1 TATT
91645 TAATTGTATT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
26 9 0.19
27 10 0.21
28 2 0.04
29 24 0.50
30 3 0.06
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (28 bp):
TATTAATAATTATAATATAATATAATTA
Found at i:91627 original size:24 final size:23
Alignment explanation
Indices: 91551--91632 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
91541 AAATACATTT
*
91551 TAATTA-ATTATTAATAATATAATA
1 TAATTATATTA-TAATTATATAA-A
* *
91575 TAA-TATAATATAATTA-ATACAT
1 TAATTATATTATAATTATATA-AA
91597 TATATTATATTATAATTATATAAA
1 TA-ATTATATTATAATTATATAAA
91621 TAGATTATATTA
1 TA-ATTATATTA
91633 ATTAAATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
22 5 0.11
23 9 0.19
24 30 0.64
25 3 0.06
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (23 bp):
TAATTATATTATAATTATATAAA
Found at i:92373 original size:24 final size:23
Alignment explanation
Indices: 92346--92408 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
92336 TAATATTAAT
92346 AATTATATAATTTAATTATGTAAC
1 AATTATATAATTTAATT-TGTAAC
* *
92370 AATTATTTATAACTT-ATTTGTAAT
1 AATTA--TATAATTTAATTTGTAAC
*
92394 TATTA-ATAATTTAAT
1 AATTATATAATTTAAT
92409 AATTATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
21 6 0.19
22 2 0.06
24 14 0.44
25 3 0.09
26 7 0.22
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (23 bp):
AATTATATAATTTAATTTGTAAC
Found at i:92386 original size:11 final size:10
Alignment explanation
Indices: 92370--92436 Score: 57
Period size: 10 Copynumber: 6.7 Consensus size: 10
92360 ATTATGTAAC
92370 AATTATTTAT
1 AATTATTTAT
*
92380 AACTTATTTGT
1 AA-TTATTTAT
*
92391 AATTATTAAT
1 AATTATTTAT
*
92401 AA-T-TTAAT
1 AATTATTTAT
*
92409 AATTATTTTT
1 AATTATTTAT
*
92419 AGTTATTTGAT
1 AATTATTT-AT
92430 AATTATT
1 AATTATT
92437 CAAATATTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
8 7 0.16
9 2 0.04
10 20 0.44
11 16 0.36
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.57
Consensus pattern (10 bp):
AATTATTTAT
Found at i:92413 original size:39 final size:39
Alignment explanation
Indices: 92370--92454 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
92360 ATTATGTAAC
92370 AATTATTTATAACTTATTTG-TAATTATTAATAAT-TTAAT
1 AATTATTT-TAACTTATTTGATAATTATTAA-AATATTAAT
* * *
92409 AATTATTTTTAGTTATTTGATAATTATTCAAATATTAAT
1 AATTATTTTAACTTATTTGATAATTATTAAAATATTAAT
*
92448 TATTATT
1 AATTATT
92455 ATAGTCATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 12 0.30
39 28 0.70
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (39 bp):
AATTATTTTAACTTATTTGATAATTATTAAAATATTAAT
Found at i:92722 original size:21 final size:21
Alignment explanation
Indices: 92696--92736 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
92686 ATATAGTAAT
92696 AAATTATTAA-ATAACTTATTG
1 AAATTATTAATAT-ACTTATTG
92717 AAATTATTAATATACTTATT
1 AAATTATTAATATACTTATT
92737 ATAGTTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.46
Consensus pattern (21 bp):
AAATTATTAATATACTTATTG
Found at i:93380 original size:73 final size:73
Alignment explanation
Indices: 93290--93460 Score: 173
Period size: 73 Copynumber: 2.4 Consensus size: 73
93280 TTAATTTTAA
*
93290 TAATAATGAATAATATAATTAT-ATT-ATAT--TTA-ATTAA-ATTA-CTTAATTATTAATATTA
1 TAAT-ATGAATAAT-TAATTATAATTAATATAATTATATTAATATTATATTAATTA-TAATA-TA
*
93348 AAT-TAATTAACT
62 AATATAA-TAAAT
* * *
93360 TAATTTG-TTAATTAATTATAATTAATATAATTATATTAATATTATATTTATTATAATATAAATA
1 TAATATGAATAATTAATTATAATTAATATAATTATATTAATATTATATTAATTATAATATAAATA
93424 TAATAAAT
66 TAATAAAT
93432 TAATATGAATAATTAATTAT-ATCTAATAT
1 TAATATGAATAATTAATTATAAT-TAATAT
93461 TAATAAATGT
Statistics
Matches: 84, Mismatches: 7, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
67 7 0.08
68 7 0.08
69 6 0.07
70 4 0.05
71 3 0.04
72 22 0.26
73 29 0.35
74 6 0.07
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (73 bp):
TAATATGAATAATTAATTATAATTAATATAATTATATTAATATTATATTAATTATAATATAAATA
TAATAAAT
Found at i:93416 original size:17 final size:17
Alignment explanation
Indices: 93368--93418 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
93358 CTTAATTTGT
*
93368 TAATTAATTATAATTAATA
1 TAATT-ATTATAA-TATTA
93387 TAATTA-TATTAATATTA
1 TAATTATTA-TAATATTA
*
93404 TATTTATTATAATAT
1 TAATTATTATAATAT
93419 AAATATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 17 0.61
18 6 0.21
19 5 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATTATTATAATATTA
Found at i:93420 original size:31 final size:29
Alignment explanation
Indices: 93290--93465 Score: 92
Period size: 27 Copynumber: 6.2 Consensus size: 29
93280 TTAATTTTAA
93290 TAATAATGAATAATATAATTATATT-ATATT
1 TAAT-ATGAATAATATAATTATATTAATA-T
* *
93320 TAAT-TAAATTACT-TAA-T-TATTAATAT
1 TAATATGAA-TAATATAATTATATTAATAT
* *
93346 TAA-ATTAATTAACT-TAATT-TGTT-A-AT
1 TAATATGAA-TAA-TATAATTATATTAATAT
93372 TAATTAT-AATTAATATAATTATATTAATAT
1 TAA-TATGAA-TAATATAATTATATTAATAT
* * *
93402 TATATTTAT-TATAATATAAATATAATAA-AT
1 TA-A--TATGAATAATATAATTATATTAATAT
93432 TAATATGAATAAT-TAATTATATCTAATAT
1 TAATATGAATAATATAATTATAT-TAATAT
93461 TAATA
1 TAATA
93466 AATGTATTAA
Statistics
Matches: 118, Mismatches: 12, Indels: 33
0.72 0.07 0.20
Matches are distributed among these distances:
26 20 0.17
27 30 0.25
28 23 0.19
29 12 0.10
30 12 0.10
31 16 0.14
32 5 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (29 bp):
TAATATGAATAATATAATTATATTAATAT
Found at i:93443 original size:23 final size:24
Alignment explanation
Indices: 93417--93468 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
93407 TTATTATAAT
93417 ATAAATATAA-TAAAT-TAATATGA
1 ATAAAT-TAATTAAATCTAATATGA
* *
93440 AT-AATTAATTATATCTAATATTA
1 ATAAATTAATTAAATCTAATATGA
93463 ATAAAT
1 ATAAAT
93469 GTATTAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
21 3 0.12
22 7 0.29
23 11 0.46
24 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
ATAAATTAATTAAATCTAATATGA
Found at i:93538 original size:24 final size:25
Alignment explanation
Indices: 93504--93554 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
93494 ATATACAAAA
93504 TATATTTAATTGT-ATCAATT-AATAT
1 TATATTTAATT-TAAT-AATTAAATAT
93529 TATA-TTAATTTAATAATTAAATAT
1 TATATTTAATTTAATAATTAAATAT
93553 TA
1 TA
93555 AATAGTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 5 0.21
24 15 0.62
25 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TATATTTAATTTAATAATTAAATAT
Found at i:93732 original size:33 final size:35
Alignment explanation
Indices: 93691--93759 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
93681 AAATTATTAC
* *
93691 TTATAAA-TTATTTA-AAATTTATATTAATATAAA
1 TTATAAATTTATTAATAAATTTAGATTAATATAAA
*
93724 TTATAAATTTATTAATAAATTTAGATTACTATAAA
1 TTATAAATTTATTAATAAATTTAGATTAATATAAA
93759 T
1 T
93760 ATAGAGTATC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 7 0.23
34 6 0.19
35 18 0.58
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (35 bp):
TTATAAATTTATTAATAAATTTAGATTAATATAAA
Found at i:93920 original size:16 final size:16
Alignment explanation
Indices: 93871--93934 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
93861 ATCAAAATAG
*
93871 ATTTAATATTAAATTA
1 ATTTAATAATAAATTA
* * *
93887 A-TCAATTAATATACTA
1 ATTTAA-TAATAAATTA
* *
93903 ATTTTATAATTAATTA
1 ATTTAATAATAAATTA
93919 ATTTAATAATAAATTA
1 ATTTAATAATAAATTA
93935 TTAAATTGAT
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 30 0.86
17 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTAATAATAAATTA
Found at i:93961 original size:23 final size:23
Alignment explanation
Indices: 93935--94007 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 23
93925 TAATAAATTA
*
93935 TTAAATTGATAAATTATAATAAT
1 TTAAATTAATAAATTATAATAAT
* *
93958 TTAAA-TACATAAACTAAAATAAT
1 TTAAATTA-ATAAATTATAATAAT
*
93981 TT--ATTAATATAGTTATAATAA-
1 TTAAATTAATA-AATTATAATAAT
94002 TTAAAT
1 TTAAAT
94008 AATTTATATT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
21 6 0.15
22 11 0.28
23 22 0.56
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (23 bp):
TTAAATTAATAAATTATAATAAT
Found at i:94032 original size:30 final size:29
Alignment explanation
Indices: 93974--94033 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
93964 ACATAAACTA
93974 AAATAATTTATTAATATAGTTATAATAATT
1 AAATAATTTATTAATATA-TTATAATAATT
*
94004 AAATAATTTATATTAATAT-TTATTATAATT
1 AAATAA-TT-TATTAATATATTATAATAATT
94034 TAAGAGGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 16 0.59
31 2 0.07
32 9 0.33
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (29 bp):
AAATAATTTATTAATATATTATAATAATT
Found at i:94222 original size:20 final size:19
Alignment explanation
Indices: 94199--94245 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
94189 ATATATTTTT
94199 TATAAGTATATTATAATAAA
1 TATAA-TATATTATAATAAA
*
94219 TATAA-AT-TTATAATAAT
1 TATAATATATTATAATAAA
94236 TATAATATAT
1 TATAATATAT
94246 AATATAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
17 14 0.58
18 4 0.17
19 1 0.04
20 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TATAATATATTATAATAAA
Found at i:94600 original size:25 final size:24
Alignment explanation
Indices: 94570--94627 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
94560 TAATTTGATT
*
94570 AATTATTAACTAATAATAATTAATA
1 AATTATTAACTAAAAATAA-TAATA
* * *
94595 TATTATACAATTAAAAATAATAATA
1 AATTAT-TAACTAAAAATAATAATA
94620 AATTATTA
1 AATTATTA
94628 CAATTATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
24 1 0.04
25 15 0.58
26 10 0.38
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (24 bp):
AATTATTAACTAAAAATAATAATA
Found at i:94613 original size:26 final size:26
Alignment explanation
Indices: 94584--94633 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
94574 ATTAACTAAT
*
94584 AATAATTAATATATTA-TACAATTAAA
1 AATAA-TAATAAATTATTACAATTAAA
94610 AATAATAATAAATTATTACAATTA
1 AATAATAATAAATTATTACAATTA
94634 TTTTATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAATAATAAATTATTACAATTAAA
Found at i:94664 original size:18 final size:20
Alignment explanation
Indices: 94636--94687 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 20
94626 TACAATTATT
*
94636 TTATTATATTAATAATTA-A
1 TTATAATATTAATAATTAGA
94655 -TATAATATT-A-AATTAGA
1 TTATAATATTAATAATTAGA
*
94672 TTATACTATTAATAAT
1 TTATAATATTAATAAT
94688 ACATTAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
16 5 0.19
17 2 0.07
18 16 0.59
19 1 0.04
20 3 0.11
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
TTATAATATTAATAATTAGA
Found at i:94669 original size:36 final size:37
Alignment explanation
Indices: 94610--94687 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 37
94600 TACAATTAAA
**
94610 AATAA-TAATAAATTATTACAATTATTTTATTA-TATT
1 AATAATTAATAAATTATTACAATTAGATTA-TACTATT
94646 AATAATTAATATAA-TATTA-AATTAGATTATACTATT
1 AATAATTAATA-AATTATTACAATTAGATTATACTATT
94682 AATAAT
1 AATAAT
94688 ACATTAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
35 2 0.05
36 23 0.62
37 10 0.27
38 2 0.05
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (37 bp):
AATAATTAATAAATTATTACAATTAGATTATACTATT
Found at i:94705 original size:23 final size:23
Alignment explanation
Indices: 94643--94713 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 23
94633 ATTTTATTAT
* *
94643 ATTAATAAT-TAATATAATATTAA
1 ATTAATTATATAAT-TAATAATAA
*
94666 ATTAGATTATACT-ATTAATAATAC
1 ATTA-ATTATA-TAATTAATAATAA
*
94690 ATTAATTATATAATTAATACTAA
1 ATTAATTATATAATTAATAATAA
94713 A
1 A
94714 CAAGATGTAG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
22 1 0.03
23 20 0.51
24 15 0.38
25 2 0.05
26 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (23 bp):
ATTAATTATATAATTAATAATAA
Found at i:95523 original size:23 final size:22
Alignment explanation
Indices: 95497--95556 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 22
95487 TTTATTTTAT
95497 TAATATATTAAATATGTTAATAA
1 TAATATATTAAATAT-TTAATAA
95520 TAATTATAGTATTAAATATTTAATAA
1 T-A--ATA-TATTAAATATTTAATAA
*
95546 TTATATATTAA
1 TAATATATTAA
95557 TTATAAATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
22 6 0.19
23 4 0.12
24 1 0.03
26 11 0.34
27 10 0.31
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (22 bp):
TAATATATTAAATATTTAATAA
Found at i:95539 original size:34 final size:35
Alignment explanation
Indices: 95494--95573 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 35
95484 AAATTTATTT
*
95494 TATTAATATATTAAATATGTTA-ATAATAATTATAG
1 TATTAATATATTAAATA-ATTATATAATAATTATAG
* *
95529 TATTAA-ATATTTAATAATTATATATTAATTATA-
1 TATTAATATATTAAATAATTATATAATAATTATAG
*
95562 AATTAAT-TATTA
1 TATTAATATATTA
95574 TATTATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
33 12 0.32
34 20 0.53
35 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (35 bp):
TATTAATATATTAAATAATTATATAATAATTATAG
Found at i:95599 original size:15 final size:15
Alignment explanation
Indices: 95516--95600 Score: 52
Period size: 14 Copynumber: 5.6 Consensus size: 15
95506 AAATATGTTA
95516 ATAATAATTATAGTAT
1 ATAATAATTATA-TAT
*
95532 -TAAATATTTAATAATTAT
1 AT-AATAATT-AT-A-TAT
* *
95550 ATATTAATTATAAAT
1 ATAATAATTATATAT
*
95565 -TAATTATTATAT-T
1 ATAATAATTATATAT
*
95578 AT-TTAATTATATAT
1 ATAATAATTATATAT
95592 ATAATAATT
1 ATAATAATT
95601 GTTATATTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 15
0.66 0.14 0.19
Matches are distributed among these distances:
13 9 0.18
14 13 0.25
15 8 0.16
16 7 0.14
17 4 0.08
18 9 0.18
19 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
ATAATAATTATATAT
Found at i:96660 original size:19 final size:19
Alignment explanation
Indices: 96636--96675 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
96626 ATAAATGAAG
*
96636 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
96655 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
96674 AT
1 AT
96676 ATTATAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:96679 original size:16 final size:15
Alignment explanation
Indices: 96655--96775 Score: 65
Period size: 16 Copynumber: 7.8 Consensus size: 15
96645 TATTAATTAA
96655 ATTAA-ATTAATATT
1 ATTAATATTAATATT
96669 ATTAAATATT-ATAGTT
1 ATT-AATATTAATA-TT
*
96685 ATTGTAATATTGATA-T
1 A-T-TAATATTAATATT
*
96701 ATTATTATTACATATT
1 ATTAATATTA-ATATT
*
96717 AATTAATTTTAATATT
1 -ATTAATATTAATATT
*
96733 CATTAAT-TTTATAGTAT
1 -ATTAATATTAATA-T-T
96750 ATTAATGA--AATATT
1 ATTAAT-ATTAATATT
*
96764 ATTAATAATAAT
1 ATTAATATTAAT
96776 TATATATGTT
Statistics
Matches: 85, Mismatches: 7, Indels: 29
0.70 0.06 0.24
Matches are distributed among these distances:
13 1 0.01
14 16 0.19
15 18 0.21
16 30 0.35
17 16 0.19
18 4 0.05
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (15 bp):
ATTAATATTAATATT
Found at i:96995 original size:19 final size:19
Alignment explanation
Indices: 96956--96995 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
96946 ATTTTATATT
* *
96956 TTGTATATAAATATTTGAA
1 TTGTATATAAATAATTAAA
*
96975 TTGTATATAATTAATTAAA
1 TTGTATATAAATAATTAAA
96994 TT
1 TT
96996 AATTAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (19 bp):
TTGTATATAAATAATTAAA
Found at i:97192 original size:16 final size:15
Alignment explanation
Indices: 97171--97211 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
97161 TGTTTTATAA
*
97171 ATATATATTAATTATT
1 ATATATATT-ATAATT
97187 ATATATATTATAATT
1 ATATATATTATAATT
97202 ATATAATATT
1 ATAT-ATATT
97212 TGTATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATATATTATAATT
Found at i:97198 original size:21 final size:21
Alignment explanation
Indices: 97156--97194 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
97146 ATTGTTTAAG
*
97156 ATTAATGTTTTATAAATATAT
1 ATTAATGTATTATAAATATAT
*
97177 ATTAAT-TATTATATATAT
1 ATTAATGTATTATAAATAT
97195 TATAATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (21 bp):
ATTAATGTATTATAAATATAT
Found at i:97210 original size:20 final size:18
Alignment explanation
Indices: 97165--97210 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 18
97155 GATTAATGTT
97165 TTATA-AATATATATTAA
1 TTATATAATATATATTAA
97182 TTAT-T-ATATATATTATAA
1 TTATATAATATATA-T-TAA
97200 TTATATAATAT
1 TTATATAATAT
97211 TTGTATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
16 7 0.29
17 5 0.21
18 7 0.29
19 1 0.04
20 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTATATAATATATATTAA
Found at i:97286 original size:16 final size:18
Alignment explanation
Indices: 97252--97288 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
97242 TTGTATAACT
*
97252 ATTAAATAATAATAGTTA
1 ATTAAATAATAATACTTA
97270 ATTAAAT-A-AATACTTA
1 ATTAAATAATAATACTTA
97286 ATT
1 ATT
97289 TATTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 1 0.06
18 7 0.39
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATAATAATACTTA
Found at i:97331 original size:24 final size:24
Alignment explanation
Indices: 97307--97353 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
97297 ATATTAAATA
97307 AATT-TTTATTAATTATTTAATAT
1 AATTGTTTATTAATTATTTAATAT
** *
97330 AATTGAATATTAATTAATTAATAT
1 AATTGTTTATTAATTATTTAATAT
97354 TATTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTGTTTATTAATTATTTAATAT
Found at i:97435 original size:22 final size:22
Alignment explanation
Indices: 97410--97459 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
97400 TTCAATTGTT
97410 TAATAAAATTAATA-TTATTATA
1 TAATAAAA-TAATATTTATTATA
* *
97432 TAATTATATAATATTTATTATA
1 TAATAAAATAATATTTATTATA
*
97454 TTATAA
1 TAATAA
97460 TAGATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATAAAATAATATTTATTATA
Found at i:97460 original size:17 final size:17
Alignment explanation
Indices: 97438--97497 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
97428 TATATAATTA
97438 TATAATATTTATTATAT
1 TATAATATTTATTATAT
**
97455 TATAATAGATATT-TAAT
1 TATAATATTTATTAT-AT
*
97472 T-TAAATATTTAATATAT
1 TAT-AATATTTATTATAT
*
97489 AATAATATT
1 TATAATATT
97498 ATATAATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 2 0.06
17 29 0.88
18 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATAATATTTATTATAT
Found at i:97534 original size:21 final size:21
Alignment explanation
Indices: 97488--97550 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
97478 ATTTAATATA
97488 TAATAATATTATATAATTATCC
1 TAATAATATTA-ATAATTATCC
* **
97510 TAATAATATTAATCATTATGT
1 TAATAATATTAATAATTATCC
97531 TAATAATATTAAGTAATTAT
1 TAATAATATTAA-TAATTAT
97551 TAATATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
22 17 0.47
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
TAATAATATTAATAATTATCC
Found at i:97692 original size:20 final size:19
Alignment explanation
Indices: 97641--97704 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
97631 AAATATTAGT
*
97641 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
97659 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
97680 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
97700 TATTA
1 TATTA
97705 GTTATAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:97837 original size:20 final size:20
Alignment explanation
Indices: 97798--97883 Score: 72
Period size: 20 Copynumber: 4.5 Consensus size: 20
97788 TAATTTATTT
* * *
97798 ATATTACTTATTAATAATAA
1 ATATTAATTATTTATTATAA
97818 ATATTAATTATTTATTATAA
1 ATATTAATTATTTATTATAA
* *
97838 A-ATT--TAATTTATCATAA
1 ATATTAATTATTTATTATAA
* *
97855 ATATTAA-TAATTATTATTA
1 ATATTAATTATTTATTATAA
97874 ATATTTAATT
1 ATA-TTAATT
97884 CAATTAATAT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
17 12 0.23
18 3 0.06
19 14 0.27
20 22 0.42
21 1 0.02
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATTAATTATTTATTATAA
Found at i:97849 original size:17 final size:17
Alignment explanation
Indices: 97827--97883 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
97817 AATATTAATT
97827 ATTTATTATAAAATTTA
1 ATTTATTATAAAATTTA
*
97844 ATTTATCAT-AAATATTA
1 ATTTATTATAAAAT-TTA
*
97861 ATAATTATTATTAATATTTA
1 AT--TTATTA-TAAAATTTA
97881 ATT
1 ATT
97884 CAATTAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
16 4 0.12
17 13 0.41
18 1 0.03
19 5 0.16
20 6 0.19
21 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATTATAAAATTTA
Found at i:98025 original size:22 final size:24
Alignment explanation
Indices: 98000--98043 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
97990 AAAAAATAAA
*
98000 ATAACTAT-TTTATTA-TAATATT
1 ATAACTATCTTAATTATTAATATT
*
98022 ATAATTATCTTAATTATTAATA
1 ATAACTATCTTAATTATTAATA
98044 ATATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 6 0.33
24 5 0.28
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (24 bp):
ATAACTATCTTAATTATTAATATT
Found at i:98158 original size:26 final size:26
Alignment explanation
Indices: 98066--98173 Score: 69
Period size: 26 Copynumber: 3.9 Consensus size: 26
98056 AATATTAAAA
* * *
98066 ATAAATTAATTTATATTATTTGA-TAAT
1 ATAAATTAA-TTATTTTAATT-ATTACT
98093 ATAAA-TAATTATTATTATATTTATTTATCT
1 ATAAATTAATTATT-TTA-A-TTA-TTA-CT
98123 ATCAATATTAATTATTTTAATTATTACT
1 AT-AA-ATTAATTATTTTAATTATTACT
* *
98151 ATAAATTAATAATTATAA-TATTA
1 ATAAATTAATTATTTTAATTATTA
98174 ATAATTATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
25 9 0.13
26 18 0.27
27 8 0.12
28 6 0.09
29 5 0.07
30 6 0.09
31 3 0.04
32 4 0.06
33 8 0.12
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (26 bp):
ATAAATTAATTATTTTAATTATTACT
Found at i:98175 original size:15 final size:14
Alignment explanation
Indices: 98150--98181 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
98140 TAATTATTAC
98150 TATAAATTAATAAT
1 TATAAATTAATAAT
98164 TATAATATTAATAAT
1 TATAA-ATTAATAAT
98179 TAT
1 TAT
98182 TAAACATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAAATTAATAAT
Found at i:98409 original size:41 final size:41
Alignment explanation
Indices: 98352--98481 Score: 181
Period size: 41 Copynumber: 3.2 Consensus size: 41
98342 TCGATAAGCC
98352 TTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGCAT
1 TTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGCAT
* * *
98393 TTTATTTTTCAAAGTTG-TGATGCCTTTGTTTAGAGGAGCTT
1 TTTATTTTTCAAAGTTGTTG-TGCCTCTATTTAGAGGAGCAT
** * *
98434 TTTATTTTTCAAAGTCATTGAGCCTCTATTTAGAGGAGCCT
1 TTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGCAT
98475 TTTATTT
1 TTTATTT
98482 ATTTTTTCAA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 2 0.03
41 74 0.95
42 2 0.03
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (41 bp):
TTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGCAT
Found at i:98925 original size:25 final size:25
Alignment explanation
Indices: 98875--98925 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
98865 ATAATTAAAG
* * *
98875 TTAATATATATAATTATTTATGTAA
1 TTAATATATAAAATTATATATATAA
98900 TTAATATATTAAAATTATATA-ATAA
1 TTAATATA-TAAAATTATATATATAA
98925 T
1 T
98926 AAATTGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
TTAATATATAAAATTATATATATAA
Found at i:99817 original size:30 final size:29
Alignment explanation
Indices: 99761--99817 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
99751 ATTATTAAAT
*
99761 ATAATAATATTATATTTTAATATAATTGC
1 ATAATAATATTATATTATAATATAATTGC
*
99790 ATAATAACTATTA-ATTAATAATTTAATT
1 ATAATAA-TATTATATT-ATAATATAATT
99818 AATATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (29 bp):
ATAATAATATTATATTATAATATAATTGC
Found at i:99962 original size:18 final size:18
Alignment explanation
Indices: 99941--99991 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
99931 TAATACTTAT
99941 AATTATTAATTATTATAA
1 AATTATTAATTATTATAA
* * *
99959 AATTAGTGACTATT-T-A
1 AATTATTAATTATTATAA
99975 AATTATTAATT-TTATAA
1 AATTATTAATTATTATAA
99992 TCTCTATATT
Statistics
Matches: 25, Mismatches: 6, Indels: 5
0.69 0.17 0.14
Matches are distributed among these distances:
15 2 0.08
16 10 0.40
17 2 0.08
18 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (18 bp):
AATTATTAATTATTATAA
Found at i:100091 original size:21 final size:23
Alignment explanation
Indices: 100065--100116 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
100055 AATTATAAAC
*
100065 AATTATTAAAT-TTATATTAT-T
1 AATTATTAAATAATATATTATAT
100086 AATTATT-AATAATATATTATAT
1 AATTATTAAATAATATATTATAT
*
100108 ACTTATTAA
1 AATTATTAA
100117 TATTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 7 0.27
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATTAAATAATATATTATAT
Found at i:100885 original size:15 final size:15
Alignment explanation
Indices: 100865--100917 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
100855 ATTTAACAAT
100865 TTAATATATTTAATA
1 TTAATATATTTAATA
*
100880 TTAATATAATTAATA
1 TTAATATATTTAATA
*
100895 TT-ATATTTTTAATA
1 TTAATATATTTAATA
100909 -TAATA-ATTT
1 TTAATATATTT
100918 TAAATAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.12
14 13 0.39
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:100918 original size:14 final size:14
Alignment explanation
Indices: 100889--100930 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
100879 ATTAATATAA
* *
100889 TTAATATTATATTT
1 TTAATATAATAATT
100903 TTAATATAATAATT
1 TTAATATAATAATT
100917 TTAA-ATAATCAATT
1 TTAATATAAT-AATT
100931 AAATATCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
TTAATATAATAATT
Found at i:101139 original size:14 final size:12
Alignment explanation
Indices: 101115--101193 Score: 58
Period size: 14 Copynumber: 6.4 Consensus size: 12
101105 TAACTATATA
101115 TATT-AATAAATT
1 TATTAAATAAA-T
101127 TATTAATATAAAT
1 TATTAA-ATAAAT
101140 TATTAAATAATTAT
1 TATTAAATAA--AT
*
101154 TTTTAAAT-AA-
1 TATTAAATAAAT
101164 T-TTAAATAAAT
1 TATTAAATAAAT
*
101175 TAATAAATATAATT
1 TATTAAATA-AA-T
101189 TATTA
1 TATTA
101194 TTATTATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 6 0.11
10 3 0.05
11 2 0.04
12 14 0.25
13 11 0.20
14 19 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTAAATAAAT
Found at i:101732 original size:18 final size:18
Alignment explanation
Indices: 101711--101774 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
101701 AATAAATCAA
101711 ATTAATTATTTAATTTAT
1 ATTAATTATTTAATTTAT
* * *
101729 ATTAA-TATATAAGGTTAA
1 ATTAATTATTTAA-TTTAT
*
101747 ATTAATTATTATAATTAAT
1 ATTAATTATT-TAATTTAT
101766 AATTAATTA
1 -ATTAATTA
101775 CATTATTTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
17 6 0.17
18 13 0.37
19 5 0.14
20 11 0.31
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
ATTAATTATTTAATTTAT
Found at i:102065 original size:21 final size:21
Alignment explanation
Indices: 102018--102065 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
102008 ATTTTTATTA
*
102018 ATTAATAAATAAATTAATATT
1 ATTAATAAATAAATTAATAAT
* * *
102039 AGTAATAACTAAATTGATAAT
1 ATTAATAAATAAATTAATAAT
102060 ATTAAT
1 ATTAAT
102066 TATTACAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (21 bp):
ATTAATAAATAAATTAATAAT
Found at i:102634 original size:182 final size:178
Alignment explanation
Indices: 102319--102887 Score: 609
Period size: 182 Copynumber: 3.2 Consensus size: 178
102309 TTTTTAAATA
* * *
102319 AATTTATTTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATT-T-TT-TTTTTTTT
1 AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTATATTATTTTATTT
* * * * * *
102380 TAAATAAGCTTGAATGAATAGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTTTTGAA
66 CAAATAAGC-TAAATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATTTGAA
*
102445 ATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTCGATAAAC
130 ATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTTGATAAAC
* * *
102494 ATATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTGGAATATTAATAAATTAGTATTATTTTA
1 A-ATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTA-TATTATTTTA
* * * *
102559 TTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACAAAATGTTACAATGATTT
63 TTTCAAATAAGCTAA-ATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATTT
* * * *
102624 GAAGTAGATAATTATTCAA-ATAGTCATGACTATTTGAACTTGTTTGTTAAAC
127 GAAATAGATAATTATT-AAGATAATCATAACTATTTGAACTTGTTTGATAAAC
* ** * *
102676 ---TTATTTTTTACAATCTTTTACTTATTAATTGTTAAAATATTAATAAATCAATATTATTTTAA
1 AATTTATTTTTTA-AATCTTTTACTTATTAATTTTTGGAATATTAATAAAT-TATATTATTTTAT
* ** * * *
102738 TCCGAAA-AAGCTCGTATGGATGGAAACAATTGTTTTATGACAAAACAAAAAAGTCATAA-GAAT
64 TTC-AAATAAGCT-AAATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAAGTTATAATG-AT
* * * * * *
102801 TTGAAATAAATAATTATTCAGATAATCATAACGATTTGAATTTGTTTAATAAAT
125 TTGAAATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTTGATAAAC
102855 AGATTTATTTTTTAAATCTTTTACTTATTAATT
1 A-ATTTATTTTTTAAATCTTTTACTTATTAATT
102888 GTCTTATTAA
Statistics
Matches: 327, Mismatches: 47, Indels: 33
0.80 0.12 0.08
Matches are distributed among these distances:
175 1 0.00
176 5 0.02
177 15 0.05
178 112 0.34
179 57 0.17
180 1 0.00
181 4 0.01
182 120 0.37
183 12 0.04
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (178 bp):
AATTTATTTTTTAAATCTTTTACTTATTAATTTTTGGAATATTAATAAATTATATTATTTTATTT
CAAATAAGCTAAATGAATAGAAACAATTGTTTTATGACAAAACAAAAAGTTATAATGATTTGAAA
TAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTTGATAAAC
Found at i:103353 original size:19 final size:20
Alignment explanation
Indices: 103326--103372 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
103316 ATAATTGTTG
* *
103326 TTTATAATAGTAAATATTA-
1 TTTAAAATAGTAAATAATAT
*
103345 TTTAAAATAGTTAATAATAT
1 TTTAAAATAGTAAATAATAT
103365 TTTAAAAT
1 TTTAAAAT
103373 TATTTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
TTTAAAATAGTAAATAATAT
Found at i:103521 original size:22 final size:19
Alignment explanation
Indices: 103458--103524 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 19
103448 TAAGACTAAA
* * *
103458 TATTATTAATTA-AATTAA
1 TATTATTAAATATTATTAT
103476 TATTATTAAATATTATTAT
1 TATTATTAAATATTATTAT
* *
103495 AATTATTGTAATATTGATATAT
1 TATTATT-AAATATT-AT-TAT
103517 TATTATTA
1 TATTATTA
103525 CCGATAATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
18 11 0.29
19 10 0.26
20 6 0.16
21 2 0.05
22 9 0.24
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TATTATTAAATATTATTAT
Found at i:103783 original size:16 final size:16
Alignment explanation
Indices: 103762--103792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
103752 TAAATAAAAA
103762 TTTATTTCATATTTTT
1 TTTATTTCATATTTTT
*
103778 TTTATTTTATATTTT
1 TTTATTTCATATTTT
103793 GTATATAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTATTTCATATTTTT
Found at i:103849 original size:9 final size:8
Alignment explanation
Indices: 103818--103870 Score: 54
Period size: 8 Copynumber: 6.4 Consensus size: 8
103808 AATTGTATGT
103818 AATTAATTA
1 AATTAA-TA
*
103827 AATTAATT
1 AATTAATA
103835 AATTAATA
1 AATTAATA
*
103843 AATTTA-A
1 AATTAATA
103850 AATTAATAA
1 AATTAAT-A
103859 ATATTAATA
1 A-ATTAATA
103868 AAT
1 AAT
103871 ATATTAATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
7 6 0.16
8 15 0.41
9 10 0.27
10 6 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
AATTAATA
Found at i:103855 original size:15 final size:16
Alignment explanation
Indices: 103835--103865 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
103825 TAAATTAATT
103835 AATTAATAAAT-TTAA
1 AATTAATAAATATTAA
103850 AATTAATAAATATTAA
1 AATTAATAAATATTAA
103866 TAAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTAATAAATATTAA
Found at i:104143 original size:29 final size:29
Alignment explanation
Indices: 104092--104149 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
104082 TTTTTTTTGT
* *
104092 ATAGTTATTTGTATAACTATTAAATAATA
1 ATAGTTATTTGAATAAATATTAAATAATA
*
104121 ATAGTTA-TTGAATAAATACTTAATTAATA
1 ATAGTTATTTGAATAAATA-TTAAATAATA
104150 TATTAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.36
29 16 0.64
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (29 bp):
ATAGTTATTTGAATAAATATTAAATAATA
Found at i:104158 original size:24 final size:22
Alignment explanation
Indices: 104125--104175 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 22
104115 ATAATAATAG
*
104125 TTATTGAATAAATACTTAATTAA
1 TTATTAAATAAATACTT-ATTAA
*
104148 TATATTAAATAAATTCTTATTAA
1 T-TATTAAATAAATACTTATTAA
104171 TTATT
1 TTATT
104176 TCATATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 4 0.16
23 7 0.28
24 14 0.56
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TTATTAAATAAATACTTATTAA
Found at i:104336 original size:17 final size:18
Alignment explanation
Indices: 104282--104357 Score: 59
Period size: 17 Copynumber: 4.3 Consensus size: 18
104272 AATACTACTA
* *
104282 TATATT-TAAATTAATAA
1 TATATTATAAAATAATAT
* *
104299 TATAATTATATAATATTTAT
1 TAT-ATTATAAAATA-ATAT
*
104319 TATATTATAATA-AATAT
1 TATATTATAAAATAATAT
*
104336 T-TAATATAAAATAATAT
1 TATATTATAAAATAATAT
104353 TATAT
1 TATAT
104358 AATTATCTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
16 8 0.18
17 13 0.30
18 6 0.14
19 12 0.27
20 5 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATATTATAAAATAATAT
Found at i:104336 original size:21 final size:19
Alignment explanation
Indices: 104296--104343 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
104286 TTTAAATTAA
104296 TAATATAATTATATAATATT
1 TAATAT-ATTATATAATATT
*
104316 TATTATATTATAATAAATATT
1 TAATATATTAT-AT-AATATT
104337 TAATATA
1 TAATATA
104344 AAATAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 7 0.29
21 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATATATTATATAATATT
Found at i:104389 original size:21 final size:21
Alignment explanation
Indices: 104345--104406 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
104335 TTTAATATAA
104345 AATAATATTATATAATTATCTT
1 AATAATATTA-ATAATTATCTT
* *
104367 AATAATATTAATCATTATGTT
1 AATAATATTAATAATTATCTT
104388 AATAATATTAAGTAATTAT
1 AATAATATTAA-TAATTAT
104407 TAATATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 20 0.56
22 16 0.44
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
AATAATATTAATAATTATCTT
Found at i:104412 original size:17 final size:18
Alignment explanation
Indices: 104390--104425 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
104380 ATTATGTTAA
104390 TAATATTAAGT-AATTAT
1 TAATATTAAGTAAATTAT
*
104407 TAATATTAATTAAATTAT
1 TAATATTAAGTAAATTAT
104425 T
1 T
104426 TAATTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TAATATTAAGTAAATTAT
Found at i:104423 original size:26 final size:27
Alignment explanation
Indices: 104386--104445 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 27
104376 AATCATTATG
104386 TTAATAATATTAAGTAATTAT-TAATA
1 TTAATAATATTAAGTAATTATATAATA
**
104412 TTAATTAA-ATTATTTAATTATATAAT-
1 TTAA-TAATATTAAGTAATTATATAATA
*
104438 TAAATAAT
1 TTAATAAT
104446 TATATGCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.11
26 18 0.64
27 7 0.25
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TTAATAATATTAAGTAATTATATAATA
Found at i:104648 original size:19 final size:20
Alignment explanation
Indices: 104626--104707 Score: 50
Period size: 19 Copynumber: 4.2 Consensus size: 20
104616 ATTAGTAAAC
104626 AATT-AATTAATTATATTAT
1 AATTAAATTAATTATATTAT
** * *
104645 AATTCCA-TAACTATTTTAT
1 AATTAAATTAATTATATTAT
104664 AATTTAATATTAAATTATATTA-
1 AA-TTAA-ATT-AATTATATTAT
104686 AA-TATAATTAA-TA-ATTAT
1 AATTA-AATTAATTATATTAT
104704 AATT
1 AATT
104708 TACTAATTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 16
0.68 0.10 0.23
Matches are distributed among these distances:
17 4 0.08
18 4 0.08
19 19 0.40
20 8 0.17
21 2 0.04
22 3 0.06
23 8 0.17
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTAAATTAATTATATTAT
Found at i:104724 original size:22 final size:21
Alignment explanation
Indices: 104690--104731 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
104680 ATATTAAATA
*
104690 TAATTAATAATTATAATTTAC
1 TAATTAAAAATTATAATTTAC
*
104711 TAATTAAAATATTATATTTTA
1 TAATTAAAA-ATTATAATTTA
104732 TGCATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TAATTAAAAATTATAATTTAC
Found at i:104747 original size:19 final size:19
Alignment explanation
Indices: 104721--104770 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
104711 TAATTAAAAT
* *
104721 ATTATATTTTATGCATTATA
1 ATTATATTTTAAGAATT-TA
*
104741 A-TATATTATAAGAATTTA
1 ATTATATTTTAAGAATTTA
104759 ATTATATTTTAA
1 ATTATATTTTAA
104771 TATAATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 3 0.12
19 21 0.84
20 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (19 bp):
ATTATATTTTAAGAATTTA
Found at i:104896 original size:17 final size:17
Alignment explanation
Indices: 104850--104897 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
104840 TGTTTTTAAA
104850 TTAATTA-ATATTA-AT
1 TTAATTATATATTATAT
*
104865 TTAATTATTTATTATAT
1 TTAATTATATATTATAT
104882 TTAATGTATAT-TTATA
1 TTAAT-TATATATTATA
104898 AACTTAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 7 0.25
16 5 0.18
17 12 0.43
18 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (17 bp):
TTAATTATATATTATAT
Found at i:104939 original size:15 final size:16
Alignment explanation
Indices: 104902--104939 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
104892 TTTATAAACT
104902 TAAATTAATATACTTA
1 TAAATTAATATACTTA
*
104918 TAAATTAGTATA-TTA
1 TAAATTAATATACTTA
*
104933 TATATTA
1 TAAATTA
104940 TTGTTTATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
TAAATTAATATACTTA
Found at i:105008 original size:20 final size:22
Alignment explanation
Indices: 104965--105009 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
104955 AGTAATCTAA
* *
104965 TATATTACTCAATGTATTATAT
1 TATATTACTCAATATATTAAAT
104987 TATATTA-T-AATATATTAAAT
1 TATATTACTCAATATATTAAAT
105007 TAT
1 TAT
105010 TAAATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 1 0.05
22 7 0.33
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TATATTACTCAATATATTAAAT
Found at i:105035 original size:28 final size:28
Alignment explanation
Indices: 104962--105036 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 28
104952 TTGAGTAATC
*
104962 TAATATATTACTCAATGTATTATATTATATTA
1 TAATATATTA--CAAT-TATTAAATTATA-TA
104994 TAATATATTA-AATTATTAAATTATA-A
1 TAATATATTACAATTATTAAATTATATA
*
105020 TAATTTATATACAATTA
1 TAATATAT-TACAATTA
105037 ATATTAACAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 8 0.21
27 2 0.05
28 16 0.41
29 3 0.08
32 10 0.26
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (28 bp):
TAATATATTACAATTATTAAATTATATA
Found at i:105114 original size:17 final size:16
Alignment explanation
Indices: 105073--105124 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
105063 ATTATAATTA
105073 TATAATTAATTAATAT
1 TATAATTAATTAATAT
*
105089 TAATTATTAATTTACA-AT
1 T-ATAATTAA-TTA-ATAT
105107 TATAATTATATTAATAT
1 TATAATTA-ATTAATAT
105124 T
1 T
105125 TGAGTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 2 0.07
17 19 0.66
18 7 0.24
19 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TATAATTAATTAATAT
Found at i:105184 original size:20 final size:19
Alignment explanation
Indices: 105157--105203 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
105147 TAAATTTATA
105157 AATAATTATAATTAATAAT
1 AATAATTATAATTAATAAT
*
105176 AATAGATTATAATTATTAAT
1 AATA-ATTATAATTAATAAT
105196 -ATAATTAT
1 AATAATTAT
105204 GATAATTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 7 0.27
20 14 0.54
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
AATAATTATAATTAATAAT
Found at i:105959 original size:16 final size:16
Alignment explanation
Indices: 105938--105968 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105928 TATTTATGAT
*
105938 AGTTAATATATATTAG
1 AGTTAATATAAATTAG
105954 AGTTAATATAAATTA
1 AGTTAATATAAATTA
105969 TAAGATATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (16 bp):
AGTTAATATAAATTAG
Found at i:106134 original size:24 final size:27
Alignment explanation
Indices: 106078--106152 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 27
106068 TAATTAAGTT
106078 AATATTTAATTTTATATCATATAAATA
1 AATATTTAATTTTATATCATATAAATA
* * *
106105 ATTATTT-A-TTTA-ATTATATAATTA
1 AATATTTAATTTTATATCATATAAATA
*
106129 AATA-TTAATTATACTATTCATATA
1 AATATTTAATTTTA-TA-TCATATA
106153 TACATTTAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 7 0.19
26 1 0.03
27 7 0.19
28 6 0.16
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (27 bp):
AATATTTAATTTTATATCATATAAATA
Found at i:106135 original size:27 final size:30
Alignment explanation
Indices: 106067--106140 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
106057 CTTAATATTA
* *
106067 ATAATTAAGTTAA-TATTTAATTTTATATCAT
1 ATAAATAA-TTAATTATTTAA-TTTATATAAT
*
106098 ATAAATAATTATTTATTTAA-TTATATAAT
1 ATAAATAATTAATTATTTAATTTATATAAT
106127 -TAAAT-ATTAATTAT
1 ATAAATAATTAATTAT
106141 ACTATTCATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 8 0.21
28 5 0.13
29 8 0.21
30 3 0.08
31 14 0.37
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (30 bp):
ATAAATAATTAATTATTTAATTTATATAAT
Found at i:107746 original size:19 final size:20
Alignment explanation
Indices: 107686--107746 Score: 54
Period size: 22 Copynumber: 3.0 Consensus size: 20
107676 TGTCATTATT
* *
107686 TAAT-TTATTATATTAATAT
1 TAATATTATTATACTAATAA
* *
107705 TTATAATATTACTACTAATTAA
1 TAATATTATTA-TACTAA-TAA
107727 TAATATTATTATA-TAATAA
1 TAATATTATTATACTAATAA
107746 T
1 T
107747 TTAATATTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
19 7 0.21
20 8 0.24
21 7 0.21
22 11 0.33
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TAATATTATTATACTAATAA
Found at i:108604 original size:14 final size:14
Alignment explanation
Indices: 108587--108613 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
108577 TCTATTTATA
108587 TATTATATTTATTG
1 TATTATATTTATTG
108601 TATTATATTTATT
1 TATTATATTTATT
108614 AAATAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TATTATATTTATTG
Found at i:108648 original size:13 final size:14
Alignment explanation
Indices: 108623--108651 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
108613 TAAATAATTA
108623 AAATTAATATTAAT
1 AAATTAATATTAAT
108637 AAATTAAT-TTAAT
1 AAATTAATATTAAT
108650 AA
1 AA
108652 GAATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTAATATTAAT
Found at i:108690 original size:15 final size:15
Alignment explanation
Indices: 108670--108702 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
108660 AAATCCTTAC
108670 TATTATAATAATAAA
1 TATTATAATAATAAA
*
108685 TATTATAATAATATA
1 TATTATAATAATAAA
108700 TAT
1 TAT
108703 AGATTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTATAATAATAAA
Found at i:108786 original size:35 final size:35
Alignment explanation
Indices: 108709--108790 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
108699 ATATAGATTA
** *
108709 ATTTTAATTTATTATTCATAATAGATAATTATGAAT
1 ATTTTAA-TTATTATTCATAATAGATAAAAATAAAT
108745 ATTTTAATTATTATTCATAATTA-ATTAAAAATAAAT
1 ATTTTAATTATTATTCATAA-TAGA-TAAAAATAAAT
108781 A-TTTAATTAT
1 ATTTTAATTAT
108791 ATTTATTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
35 23 0.56
36 18 0.44
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (35 bp):
ATTTTAATTATTATTCATAATAGATAAAAATAAAT
Found at i:108871 original size:17 final size:18
Alignment explanation
Indices: 108827--108882 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
108817 TTAGATTACT
*
108827 TTATTAATATATAATATAA
1 TTATTAATAAATAAT-TAA
108846 -TATTAAT-AATAGATTAA
1 TTATTAATAAATA-ATTAA
108863 TTATT-ATAAATAATTAA
1 TTATTAATAAATAATTAA
108880 TTA
1 TTA
108883 CAATTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TTATTAATAAATAATTAA
Found at i:108955 original size:45 final size:44
Alignment explanation
Indices: 108860--108972 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 44
108850 AATAATAGAT
*
108860 TAATTATTA-TAAATAATTAATTACAATTATTTATATTAGTTTAT
1 TAATTATTATTAAATAATT-ATTACAATTATTTATATTAGTTTAA
108904 TCAATTATTATTAAAT-ATT-TTACAAATTATTATTATTATTA-TTTAA
1 T-AATTATTATTAAATAATTATTAC-AATTA-T-TTA-TATTAGTTTAA
* *
108950 TAATTATTATTAATTAATCATTA
1 TAATTATTATTAAATAATTATTA
108973 TTCTGAAAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
43 4 0.07
44 6 0.10
45 25 0.43
46 15 0.26
47 8 0.14
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (44 bp):
TAATTATTATTAAATAATTATTACAATTATTTATATTAGTTTAA
Found at i:108957 original size:14 final size:15
Alignment explanation
Indices: 108938--108974 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
108928 AATTATTATT
108938 ATTATTATTTAA-TA
1 ATTATTATTTAATTA
108952 ATTATTA-TTAATTA
1 ATTATTATTTAATTA
*
108966 ATCATTATT
1 ATTATTATT
108975 CTGAAAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 4 0.20
14 15 0.75
15 1 0.05
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTATTATTTAATTA
Found at i:108957 original size:17 final size:17
Alignment explanation
Indices: 108935--108974 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
108925 ACAAATTATT
*
108935 ATTATTATTATTTAATA
1 ATTATTATTAATTAATA
*
108952 ATTATTATTAATTAATC
1 ATTATTATTAATTAATA
108969 ATTATT
1 ATTATT
108975 CTGAAAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTATTATTAATTAATA
Found at i:109129 original size:13 final size:13
Alignment explanation
Indices: 109111--109135 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109101 ATTAATATTA
109111 AATATTTAAATAG
1 AATATTTAAATAG
109124 AATATTTAAATA
1 AATATTTAAATA
109136 ATTAAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATATTTAAATAG
Found at i:109134 original size:21 final size:19
Alignment explanation
Indices: 109095--109151 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
109085 ATAGTCAATT
*
109095 TAATTAATTAATA-TTAAA
1 TAATTAAATAATATTTAAA
*
109113 TATTTAAATAGAATATTTAAA
1 TAATTAAAT--AATATTTAAA
109134 TAATTAAATAATATTTAA
1 TAATTAAATAATATTTAA
109152 TTTAAATAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
18 7 0.21
19 9 0.27
20 4 0.12
21 13 0.39
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TAATTAAATAATATTTAAA
Found at i:110458 original size:20 final size:20
Alignment explanation
Indices: 110401--110459 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
110391 AAAATATAAA
110401 TTAATATTAAATAAGTAATTAT
1 TTAATATTAAA-AA-TAATTAT
* * *
110423 ATAATA-TATTATATAATTAT
1 TTAATATTA-AAAATAATTAT
110443 TTAATATTAAAAATAAT
1 TTAATATTAAAAATAAT
110460 ACAATATTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
20 18 0.62
21 5 0.17
22 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (20 bp):
TTAATATTAAAAATAATTAT
Found at i:110927 original size:10 final size:11
Alignment explanation
Indices: 110892--110937 Score: 51
Period size: 10 Copynumber: 4.2 Consensus size: 11
110882 ATAAATTCTT
110892 ATTATATAATTA
1 ATTAT-TAATTA
*
110904 ATTTAGTAATTA
1 A-TTATTAATTA
110916 ATTATT-ATTA
1 ATTATTAATTA
110926 A-TATTAATTA
1 ATTATTAATTA
110936 AT
1 AT
110938 AATATGCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
9 4 0.14
10 10 0.34
11 4 0.14
12 8 0.28
13 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (11 bp):
ATTATTAATTA
Found at i:111883 original size:179 final size:177
Alignment explanation
Indices: 111316--112011 Score: 647
Period size: 179 Copynumber: 3.9 Consensus size: 177
111306 GGAGTAAGCT
* * * * * *
111316 ATTTT-AAATAGTTATAACTATTTGAATTTGTTCGGTAAACAAATATATTTTTTAAAACTCTTGC
1 ATTTTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTAC
* ** * * *
111380 TTATTAACTTTCAAAATATTAAGAAATTAGTATTATTTTATTTTAAATAAGCTTTTATGAATTGA
66 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTCTATG-ATTGA
* * *
111445 AACAATTATTTTATG-TAAAAAAAGGTCATAACTATTTTAAATAAATA
130 AACAATTATTTTATGACAAAAAAAGGTCATAACGATTTAAAATAAATA
* ** * *
111492 ATTTTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACTGATTTATTTTTTAAAATATTTT
1 A-TTTTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATTTTTT-AAATCTCTT
* * * * * *
111557 ACTTATTAATTTTTTG-AATGTTAATAAATTTGGATTATTTTATTCTGAATAAACTTGTATGATA
64 ACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTCTATGAT-
* * * * * *
111621 TGAAACAAATATTTGATGACTAAACAAAAGGTAAGAATGATCTAAAATAAATA
127 TGAAACAATTATTTTATGAC-AAA-AAAAGGTCATAACGATTTAAAATAAATA
* * ** * * *
111674 ATTATCTAATCA-TTTTAACTATTTGAACTGGTTCCGCAAGCAAATTTATTTTTTAAATCTCTTA
1 ATTTTCAAAT-AGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTA
* * * * *
111738 CTTATTAATTTTTGAAATATTATTAAATTAGTAATATTTT-TAACCAAATAAGCTTCTATGATCG
65 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TCTAAATAAGCTTCTATGATTG
* * * * **
111802 AAAACAATTATTTTATGACAAAAAAAGATCTTAACGATTTGAGATTGATA
129 -AAACAATTATTTTATGACAAAAAAAGGTCATAACGATTTAAAATAAATA
* *
111852 ATTGTTCAAATAGTCCTAACTATTTGAACTGGTTTGGTAAACAAATTTATTTTTTTAAA--TC-T
1 ATT-TTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTA-TTTTTTAAATCTCTT
* *
111914 -CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-TCGAATAAGCTTGTATGATA
64 ACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCT-AAATAAGCTTCTATGAT-
** * **
111977 AAAAATAATTGCTTTATGACAAAACAAAAGGTCAT
127 TGAAACAATTATTTTATGAC-AAA-AAAAGGTCAT
112012 TTATTAAATC
Statistics
Matches: 415, Mismatches: 85, Indels: 38
0.77 0.16 0.07
Matches are distributed among these distances:
176 69 0.17
177 9 0.02
178 77 0.19
179 113 0.27
180 79 0.19
181 44 0.11
182 24 0.06
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (177 bp):
ATTTTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATTTTTTAAATCTCTTAC
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCTAAATAAGCTTCTATGATTGAA
ACAATTATTTTATGACAAAAAAAGGTCATAACGATTTAAAATAAATA
Found at i:112138 original size:19 final size:18
Alignment explanation
Indices: 112104--112143 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
112094 TAATAACAGT
112104 TTATTTAATATTTAAATA
1 TTATTTAATATTTAAATA
112122 TTATATTAAT-TTATAAATA
1 TTAT-TTAATATT-TAAATA
112141 TTA
1 TTA
112144 ATAACTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTATTTAATATTTAAATA
Found at i:112815 original size:23 final size:22
Alignment explanation
Indices: 112780--112886 Score: 98
Period size: 23 Copynumber: 4.9 Consensus size: 22
112770 ACTAATATAA
*
112780 ATTAAT-TTAAATATATAAATT
1 ATTAATATTAAATATATAATTT
*
112801 ATTAATTATTAAATATTTAATTT
1 ATTAA-TATTAAATATATAATTT
112824 ATTAATGATT--ATAT-TAATTT
1 ATTAAT-ATTAAATATATAATTT
*
112844 ATTAATATTAATAAATATATATTT
1 ATTAATATTAA-ATATATA-ATTT
*
112868 ATTAA-ATTAATTAATATAA
1 ATTAATATTAAAT-ATATAA
112887 ATATTAAATA
Statistics
Matches: 72, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
19 3 0.04
20 12 0.17
21 9 0.12
22 6 0.08
23 33 0.46
24 9 0.12
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (22 bp):
ATTAATATTAAATATATAATTT
Found at i:112827 original size:16 final size:16
Alignment explanation
Indices: 112802--112852 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
112792 ATATAAATTA
112802 TTAA-TTATTAAATAT
1 TTAATTTATTAAATAT
112817 TTAATTTATTAATGATTAT
1 TTAATTTATTAA--A-TAT
112836 ATTAATTTATT-AATAT
1 -TTAATTTATTAAATAT
112852 T
1 T
112853 AATAAATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 5 0.16
16 10 0.32
17 1 0.03
18 1 0.03
19 4 0.13
20 10 0.32
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TTAATTTATTAAATAT
Found at i:112842 original size:20 final size:19
Alignment explanation
Indices: 112751--112853 Score: 76
Period size: 19 Copynumber: 5.5 Consensus size: 19
112741 ACTATATTAT
*
112751 TTAATTTTATATTAATTTAA
1 TTAATATTATATTAATTT-A
* *
112771 CTAATA-TAAATTAATTTA
1 TTAATATTATATTAATTTA
112789 --AATA-TATA--AA-TTA
1 TTAATATTATATTAATTTA
112802 TTAATTATTAAATATTTAATTTA
1 TTAA-TATT--ATA-TTAATTTA
112825 TTAATGATTATATTAATTTA
1 TTAAT-ATTATATTAATTTA
112845 TTAATATTA
1 TTAATATTA
112854 ATAAATATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
13 3 0.04
14 2 0.03
15 2 0.03
16 9 0.13
17 1 0.01
18 1 0.01
19 17 0.25
20 17 0.25
21 3 0.04
22 3 0.04
23 10 0.15
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (19 bp):
TTAATATTATATTAATTTA
Done.