Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168259.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_49, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 171922
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
File 4 of 5
Found at i:112894 original size:21 final size:23
Alignment explanation
Indices: 112843--112903 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
112833 TATATTAATT
* *
112843 TATTAATATTAATAAATATATATT
1 TATTAA-ATTAATTAATATATATA
112867 TATTAAATTAATTAATATA-A-A
1 TATTAAATTAATTAATATATATA
112888 TATTAAA-TAAGTTAAT
1 TATTAAATTAA-TTAAT
112904 TTGATTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 3 0.09
21 12 0.35
22 1 0.03
23 12 0.35
24 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TATTAAATTAATTAATATATATA
Found at i:113415 original size:180 final size:180
Alignment explanation
Indices: 112964--113442 Score: 514
Period size: 181 Copynumber: 2.6 Consensus size: 180
112954 TAATATCATT
* * * * * *
112964 AATAATACTAATTTATTAATATTTAAAAAATTAATTAGTAAGAGATTTAAAAAGTAAATCTGCTT
1 AATAATACTAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGATT
* ** * * *
113029 ACCAAACCATTTCAAATAGTTTTGACTATTTTAAAAATTATCTATTTCGAATCGTTATAACCTTT
66 ACCAAACCAGTTCAAATAGTTAAGACTA-TTCAATAATTATCTATTTCAAATCGTTATAACCTTT
* * * ** *
113094 TATTTTATCATCAAACAATTGGTTCTGTTTATACTATTTTGTTTGGAATAA
130 TATTTTATCATAAAACAATTGGTTCTGTTCATACAAGCTTATTTGGAATAA
* * * * * * *
113145 AATAAAACTAATTTAATAATA-TTCTGAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAAT
1 AATAATACTAATTTAATAATATTTC-AAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGAT
* * * * * *
113209 TGCCAAACCGGTTGAAATAGTTAAGACTATATGAATGATTATCTATTTCAAATCGTTATGACCTT
65 TACCAAACCAGTTCAAATAGTTAAGACTAT-TCAATAATTATCTATTTCAAATCGTTATAACCTT
* * * * * *
113274 TTCTTTTGTCGTAAAACAATT-GTTTTGTTCGTACAAGCTTATTTGGATTAA
129 TTATTTTATCATAAAACAATTGGTTCTGTTCATACAAGCTTATTTGGAATAA
* * *
113325 AATAATCCTAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTTT
1 AATAATACTAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGATT
**
113390 ACCAAATTAGTTCAAAT-GATTAAGACTATTACAATAATTATCTATTTCAAATC
66 ACCAAACCAGTTCAAATAG-TTAAGACTATT-CAATAATTATCTATTTCAAATC
113443 ATTTTGATAT
Statistics
Matches: 240, Mismatches: 53, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
179 2 0.01
180 118 0.49
181 120 0.50
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (180 bp):
AATAATACTAATTTAATAATATTTCAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGATT
ACCAAACCAGTTCAAATAGTTAAGACTATTCAATAATTATCTATTTCAAATCGTTATAACCTTTT
ATTTTATCATAAAACAATTGGTTCTGTTCATACAAGCTTATTTGGAATAA
Found at i:113530 original size:24 final size:23
Alignment explanation
Indices: 113489--113554 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 23
113479 TTATAATTGA
*
113489 TTAAAC-AATTAT-ACTAATAAT
1 TTAAACTAATTATAAATAATAAT
*
113510 TTATAACTATTTATAAATAATTAAT
1 TTA-AACTAATTATAAATAA-TAAT
* *
113535 TTAAAGTAATTATAATTAAT
1 TTAAACTAATTATAAATAAT
113555 TATTATATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 3 0.08
22 3 0.08
23 6 0.17
24 17 0.47
25 7 0.19
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (23 bp):
TTAAACTAATTATAAATAATAAT
Found at i:113555 original size:24 final size:25
Alignment explanation
Indices: 113506--113556 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
113496 ATTATACTAA
*
113506 TAATTTATAACTATTTATAAATAAT
1 TAATTTATAACTAATTATAAATAAT
* *
113531 TAATTTA-AAGTAATTATAATTAAT
1 TAATTTATAACTAATTATAAATAAT
113555 TA
1 TA
113557 TTATATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
TAATTTATAACTAATTATAAATAAT
Found at i:113566 original size:12 final size:12
Alignment explanation
Indices: 113543--113573 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
113533 ATTTAAAGTA
113543 ATTATAATTAATT
1 ATTAT-ATTAATT
113556 ATTATATTAATT
1 ATTATATTAATT
113568 ATTATA
1 ATTATA
113574 ACAATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATATTAATT
Found at i:114770 original size:23 final size:25
Alignment explanation
Indices: 114743--114797 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
114733 ATAAAATAAT
114743 ATTAATTTA-TTAAA-ATTCAAAAA
1 ATTAATTTACTTAAAGATTCAAAAA
* *
114766 ATTAA-TAACTTAAAGATTTAAAAA
1 ATTAATTTACTTAAAGATTCAAAAA
*
114790 ATAAATTT
1 ATTAATTT
114798 GTTTATTGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 10 0.40
24 12 0.48
25 1 0.04
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAATTTACTTAAAGATTCAAAAA
Found at i:115117 original size:181 final size:178
Alignment explanation
Indices: 114518--115267 Score: 700
Period size: 182 Copynumber: 4.2 Consensus size: 178
114508 GAAACAATTG
* * * *
114518 TAAAATAATTGTTTAC-GTTCATACAAGCTTATTTC-AAATAAAATGATA-TAAATTTACTAATA
1 TAAAACAATTGTTT-CTATTCATACAAGCTTA-TTCAAAATAAAATAATACT-AATTTATTAATA
** * * * * *
114580 TTCTAAGGATTAATAAGTAAAAATTTAAAACATAAATCTATTTTCTAAACACGTCCAAATAGTTA
63 TTCTAAAAATTAATAAGTAAAGATTTAAAA-ATAAATCTATTTACCAAACAAGTTCAAATAGTTA
*
114645 TGACTATTTGAACA-ATTATCTATTTCAAATCGTTATGAC-CTTT-TTTTGTCA
127 TGACTATTT-AA-ATATTATCTATTTCAAATCGTTATGACATTTTGTTTTGTCA
* * * * * *
114696 TACACCAATTGATTCTATTCATA-AAGGCTTATTCAGAATAAAATAATATTAATTTATTAAAATT
1 TAAAACAATTGTTTCTATTCATACAA-GCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * * *** *
114760 CAAAAAATTAATAACTTAAAGATTTAAAAAATAAATTTGTTTATTGAGCGAA-TTCAAATAGTTA
65 CTAAAAATTAATAA-GTAAAGATTT-AAAAATAAATCTATTTACCAAAC-AAGTTCAAATAGTTA
* * * *
114824 TGACTACTTAAATAATTATTTTATTTCAAATTGTTATGATATTTTGATTTT-TCA
127 TGACTATTTAAAT-ATTA-TCTATTTCAAATCGTTATGACATTTTG-TTTTGTCA
* * * * * *
114878 TGAACCAATAGTTTCTATTCATACATGTTTATTCAAAATAAGATAATACTAATTTATTAATATTC
1 TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTC
* * * * *
114943 TAAAAATTAATAAGTTAGAGATTTAAATAATAAATATGTTTACCAAACAAGTTCAAATAATCATG
66 TAAAAATTAATAAG-TAAAGATTTAAA-AATAAATCTATTTACCAAACAAGTTCAAATAGTTATG
* * * *
115008 TCCATTTAAACTATTATCTATTTCAAATCATTAGGACATTTTGTTTTGTCA
129 ACTATTTAAA-TATTATCTATTTCAAATCGTTATGACATTTTGTTTTGTCA
* ** * *
115059 TAAAACAATTGTTTCTTTTCATACAAAATTATTCAAAATAAAATAATACTATTTTATTAATATTT
1 TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTC
* * *
115124 TGAAAATTAATAAG---AGATTTAAAAACTAAATCTATTTACCATACCAGTTCAAATAGTTATGA
66 TAAAAATTAATAAGTAAAGATTTAAAAA-TAAATCTATTTACCAAACAAGTTCAAATAGTTATGA
* * *
115186 CTATTTGAATAGTTATCTATTTCAAATTGGTATG--ATCTTTGTTTTGTCA
130 CTATTTAAATA-TTATCTATTTCAAATCGTTATGACAT-TTTGTTTTGTCA
* * *
115235 TAAAATAATTGTTTCTATTCATATAAACTTATT
1 TAAAACAATTGTTTCTATTCATACAAGCTTATT
115268 TGAAGTAAAA
Statistics
Matches: 467, Mismatches: 83, Indels: 46
0.78 0.14 0.08
Matches are distributed among these distances:
175 2 0.00
176 45 0.10
177 70 0.15
178 57 0.12
179 45 0.10
180 27 0.06
181 101 0.22
182 114 0.24
183 6 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (178 bp):
TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTC
TAAAAATTAATAAGTAAAGATTTAAAAATAAATCTATTTACCAAACAAGTTCAAATAGTTATGAC
TATTTAAATATTATCTATTTCAAATCGTTATGACATTTTGTTTTGTCA
Found at i:115207 original size:16 final size:17
Alignment explanation
Indices: 115175--115207 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
115165 TACCAGTTCA
115175 AATAGTTATGACTATTTG
1 AATAGTTAT-ACTATTTG
115193 AATAGTTAT-CTATTT
1 AATAGTTATACTATTT
115208 CAAATTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.48
Consensus pattern (17 bp):
AATAGTTATACTATTTG
Found at i:115387 original size:14 final size:14
Alignment explanation
Indices: 115346--115379 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
115336 TTGAGTTTAA
*
115346 TAATTATTA-CTAT
1 TAATTATAATCTAT
115359 TAATTATAATCTAT
1 TAATTATAATCTAT
115373 TAATTAT
1 TAATTAT
115380 CAATTATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATTATAATCTAT
Found at i:115516 original size:16 final size:17
Alignment explanation
Indices: 115411--115533 Score: 57
Period size: 16 Copynumber: 7.6 Consensus size: 17
115401 AGAATATAAA
* *
115411 ATAATTATTAGTAAATT
1 ATAATTATTATTAATTT
* *
115428 ATTAGTTAATATTAA-TT
1 A-TAATTATTATTAATTT
* * *
115445 A-AATTATAATCAAATT
1 ATAATTATTATTAATTT
*
115461 ATAA-TATTA-TGA-TT
1 ATAATTATTATTAATTT
* *
115475 AT-ATTATAATTCATTT
1 ATAATTATTATTAATTT
115491 -TAATGATATTATT-ATTT
1 ATAAT--TATTATTAATTT
*
115508 ATAATTATTATTAATAT
1 ATAATTATTATTAATTT
115525 ATAA-TATTA
1 ATAATTATTA
115534 ATATAAATGT
Statistics
Matches: 81, Mismatches: 14, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
13 1 0.01
14 8 0.10
15 12 0.15
16 23 0.28
17 17 0.21
18 20 0.25
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (17 bp):
ATAATTATTATTAATTT
Found at i:115606 original size:15 final size:15
Alignment explanation
Indices: 115507--115612 Score: 78
Period size: 15 Copynumber: 7.1 Consensus size: 15
115497 TATTATTATT
*
115507 TATAATTATTATTAA
1 TATAATTAATATTAA
115522 TAT-A-TAATATTAA
1 TATAATTAATATTAA
* **
115535 TATAAATGTTATTAA
1 TATAATTAATATTAA
115550 TATAACTTAA-ATTAA
1 TATAA-TTAATATTAA
*
115565 TA-AATTATATAATAA
1 TATAATTA-ATATTAA
*
115580 TTATTATT-ATATTAA
1 -TATAATTAATATTAA
*
115595 AATAATTAATATTTAA
1 TATAATTAATA-TTAA
115611 TA
1 TA
115613 ATTGTATAAA
Statistics
Matches: 70, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
13 14 0.20
14 10 0.14
15 35 0.50
16 8 0.11
17 3 0.04
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (15 bp):
TATAATTAATATTAA
Found at i:115788 original size:20 final size:19
Alignment explanation
Indices: 115745--115788 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
115735 ATGATAAAAC
*
115745 AAATAAACTATTTTAATTA
1 AAATAAAATATTTTAATTA
* *
115764 TAATAAAATAATTTTATTTA
1 AAATAAAAT-ATTTTAATTA
115784 AAATA
1 AAATA
115789 TTGTAAATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
AAATAAAATATTTTAATTA
Found at i:115838 original size:25 final size:27
Alignment explanation
Indices: 115810--115874 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 27
115800 ATTAGAAAGG
115810 AATAATATATATT-TAATTA-TAATTT
1 AATAATATATATTATAATTATTAATTT
*
115835 AATATTATA-ATTATAATTATTTAATTT
1 AATAATATATATTATAATTA-TTAATTT
*
115862 AATTATATTATAT
1 AATAATA-TATAT
115875 AAAGTTAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
24 3 0.09
25 14 0.44
27 11 0.34
28 2 0.06
29 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
AATAATATATATTATAATTATTAATTT
Found at i:115864 original size:19 final size:20
Alignment explanation
Indices: 115818--115872 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
115808 GGAATAATAT
115818 ATATTTAATTATAA-T-TTA
1 ATATTTAATTATAATTATTA
*
115836 ATATTATAATTATAATTATTT
1 ATATT-TAATTATAATTATTA
115857 A-ATTTAATTAT-ATTAT
1 ATATTTAATTATAATTAT
115873 ATAAAGTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.30
19 16 0.48
20 4 0.12
21 3 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
ATATTTAATTATAATTATTA
Found at i:115882 original size:19 final size:19
Alignment explanation
Indices: 115842--115888 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
115832 TTTAATATTA
* *
115842 TAATTATAATTATTTAATT
1 TAATTATAATTATTAAAGT
115861 TAATTAT-ATTATATAAAGT
1 TAATTATAATTAT-TAAAGT
*
115880 TAATGATAA
1 TAATTATAA
115889 ACAAATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (19 bp):
TAATTATAATTATTAAAGT
Found at i:115970 original size:21 final size:21
Alignment explanation
Indices: 115923--115970 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
115913 ATTTTTATTA
* *
115923 ATTAATAAATAAATTAATATT
1 ATTAATAAATAAATCAATAAT
* * *
115944 AATAATAACTAAATCGATAAT
1 ATTAATAAATAAATCAATAAT
115965 ATTAAT
1 ATTAAT
115971 TATTCAAAAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (21 bp):
ATTAATAAATAAATCAATAAT
Found at i:116528 original size:178 final size:180
Alignment explanation
Indices: 116111--116632 Score: 465
Period size: 182 Copynumber: 2.9 Consensus size: 180
116101 AAAGAGATTT
* * * * *
116111 ATATTATTTTATTTGAAATAAGCTTGA-ATGAATAG-AACAAATTGTTTTATGACAAAACAAAAG
1 ATATTATTTTATCTCAAATAAGC-TAACATGAATTGAAAC-AACTGTTTTATGACAAAACAAAAG
** *
116174 GTTGTAATATTTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTTGATAAAC
64 GTTACAATATTTTGAAATAGATAATTATTAAGACAGTCATAACTATTTGAACTTGTTTGATAAAC
* * * * *
116239 AAATTTATTTTTTTAATTCTATTACTTTTTAATTTTTGAAATATTAATAAATTA
129 --ATTTATTTTTTAAAATCTATTACTTATTAATTTTTGAAATACTAATAAATCA
* * * * * *
116293 CTATTATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTGTTACAAAACAAAATGT
1 ATATTATTTTATCTCAAATAAGCTAACATGAATTGAAACAACTGTTTTATGACAAAACAAAAGGT
* * *
116358 TACAATGA-TTTGAAGTAGATAATTATTCAA-ACAGTTATGACTATTTGAACTTGTTT-AGTAAA
66 TACAAT-ATTTTGAAATAGATAATTATT-AAGACAGTCATAACTATTTGAACTTGTTTGA-TAAA
*
116420 C-TTT-TTTTTTAAAATCTTTTACTTATT-ATTTGTTGAAATACTAATAAATCA
128 CATTTATTTTTTAAAATCTATTACTTATTAATTT-TTGAAATACTAATAAATCA
* * * *
116471 ATATTATTTTAATCT-GAATAAGCTCATATGGA-TGAAAACAACTGTTTTATGACAAAACAAAAA
1 ATATTATTTT-ATCTCAAATAAGCTAACATGAATTG-AAACAACTGTTTTATGACAAAAC--AAA
* * * * * * * * * * *
116534 AAGTCATAAGAATTTGAAATAAATAATTATTCATATAGTCATAA-TAATTTGAATTTGTTCGATA
62 AGGTTACAATATTTTGAAATAGATAATTATTAAGACAGTCATAACT-ATTTGAACTTGTTTGAT-
* *
116598 AATAGATTTATTTTTT-AAATCTTTTACTTATTAAT
125 AA-ACATTTATTTTTTAAAATCTATTACTTATTAAT
116633 AACTATTTAC
Statistics
Matches: 280, Mismatches: 41, Indels: 36
0.78 0.11 0.10
Matches are distributed among these distances:
177 6 0.02
178 78 0.28
179 9 0.03
180 46 0.16
181 6 0.02
182 102 0.36
183 25 0.09
184 8 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ATATTATTTTATCTCAAATAAGCTAACATGAATTGAAACAACTGTTTTATGACAAAACAAAAGGT
TACAATATTTTGAAATAGATAATTATTAAGACAGTCATAACTATTTGAACTTGTTTGATAAACAT
TTATTTTTTAAAATCTATTACTTATTAATTTTTGAAATACTAATAAATCA
Found at i:117184 original size:19 final size:19
Alignment explanation
Indices: 117162--117201 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
117152 ATAAATGAAG
*
117162 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
117181 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
117200 AT
1 AT
117202 ATTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:117202 original size:10 final size:11
Alignment explanation
Indices: 117188--117252 Score: 66
Period size: 10 Copynumber: 6.0 Consensus size: 11
117178 TAAATTAAAT
117188 TAATATTATTA
1 TAATATTATTA
117199 -AATATTATTA
1 TAATATTATTA
117209 TTATATATTATTA
1 -TA-ATATTATTA
117222 T-A-ATTATTA
1 TAATATTATTA
117231 TAATATTGA-TA
1 TAATATT-ATTA
*
117242 TATTATTATTA
1 TAATATTATTA
117253 CCGATAATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
9 8 0.17
10 13 0.28
11 13 0.28
12 3 0.07
13 9 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (11 bp):
TAATATTATTA
Found at i:117207 original size:3 final size:3
Alignment explanation
Indices: 117186--117252 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
117176 ATTAAATTAA
* * *
117186 ATT AAT ATT ATT AAAT ATT ATT ATT ATAT ATT ATT ATA ATT ATT A-T
1 ATT ATT ATT ATT -ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
*
117232 AAT ATT GATAT ATT ATT ATT A
1 ATT ATT -AT-T ATT ATT ATT A
117253 CCGATAATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
2 2 0.04
3 40 0.77
4 9 0.17
5 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (3 bp):
ATT
Found at i:117208 original size:19 final size:19
Alignment explanation
Indices: 117186--117249 Score: 60
Period size: 19 Copynumber: 3.2 Consensus size: 19
117176 ATTAAATTAA
117186 ATTAATATTATTAAATATTATT
1 ATTAATATTATT--ATA-TATT
117208 ATTATATATTATTATA-ATT
1 ATTA-ATATTATTATATATT
*
117227 ATT-ATAATATTGATATATT
1 ATTAATATTATT-ATATATT
117246 ATTA
1 ATTA
117250 TTACCGATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
17 7 0.19
18 3 0.08
19 12 0.32
21 3 0.08
22 4 0.11
23 8 0.22
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTAATATTATTATATATT
Found at i:117250 original size:19 final size:18
Alignment explanation
Indices: 117186--117250 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 18
117176 ATTAAATTAA
117186 ATTA-ATATTATTA-AAT
1 ATTATATATTATTATAAT
*
117202 ATTAT-TATTA-TATATT
1 ATTATATATTATTATAAT
117218 ATTATA-ATTATTATAAT
1 ATTATATATTATTATAAT
117235 ATTGATATATTATTAT
1 ATT-ATATATTATTAT
117251 TACCGATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
15 2 0.05
16 20 0.49
17 8 0.20
18 3 0.07
19 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTATATATTATTATAAT
Found at i:117556 original size:19 final size:19
Alignment explanation
Indices: 117520--117556 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
117510 ATTTTATATT
*
117520 TTGTATATAAATATTTAAA
1 TTGTATATAAATAATTAAA
*
117539 TTGTATATAATTAATTAA
1 TTGTATATAAATAATTAA
117557 TTAATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTGTATATAAATAATTAAA
Found at i:117790 original size:16 final size:15
Alignment explanation
Indices: 117769--117809 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
117759 TATTTTAGAA
*
117769 ATATATATTAATTATT
1 ATATATATT-ATAATT
117785 ATATATATTATAATT
1 ATATATATTATAATT
117800 ATATAATATT
1 ATAT-ATATT
117810 TTTATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.39
16 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATATATTATAATT
Found at i:117884 original size:16 final size:18
Alignment explanation
Indices: 117850--117886 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
117840 TTGTATAACT
*
117850 ATTAAATAATAATAGTTA
1 ATTAAATAATAATACTTA
117868 ATTAAAT-A-AATACTTA
1 ATTAAATAATAATACTTA
117884 ATT
1 ATT
117887 TATTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 1 0.06
18 7 0.39
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATAATAATACTTA
Found at i:117943 original size:17 final size:15
Alignment explanation
Indices: 117912--117947 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
117902 ATAAATTCTT
117912 ATTAATTATTTATTA
1 ATTAATTATTTATTA
117927 ATTAATTAATATTATTA
1 ATTAATT-AT-TTATTA
117944 ATTA
1 ATTA
117948 TCTAAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 2 0.11
17 10 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTAATTATTTATTA
Found at i:118020 original size:22 final size:24
Alignment explanation
Indices: 117995--118045 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
117985 TTCAATTGTT
*
117995 TAATAAAATTAAT-AT-TATTATA
1 TAATAAAATTAATAATATAATATA
*
118017 TAATTAAATTAATAATATAATATA
1 TAATAAAATTAATAATATAATATA
118041 TAATA
1 TAATA
118046 TTTATTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 12 0.50
23 2 0.08
24 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATAAAATTAATAATATAATATA
Found at i:118023 original size:17 final size:17
Alignment explanation
Indices: 117995--118037 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
117985 TTCAATTGTT
*
117995 TAATAAAATTAATATT-A
1 TAATATAATTAA-ATTAA
*
118012 TTATATAATTAAATTAA
1 TAATATAATTAAATTAA
118029 TAATATAAT
1 TAATATAAT
118038 ATATAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 3 0.14
17 19 0.86
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATTAAATTAA
Found at i:118061 original size:17 final size:17
Alignment explanation
Indices: 118039--118098 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
118029 TAATATAATA
118039 TATAATATTTATTATAT
1 TATAATATTTATTATAT
**
118056 TATAATAGATATT-TAAT
1 TATAATATTTATTAT-AT
*
118073 T-TAAATATTTAATATAT
1 TAT-AATATTTATTATAT
*
118090 AATAATATT
1 TATAATATT
118099 ATACAATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 2 0.06
17 29 0.88
18 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TATAATATTTATTATAT
Found at i:118292 original size:20 final size:19
Alignment explanation
Indices: 118241--118304 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
118231 AAATATTATT
*
118241 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
118259 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
118280 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
118300 TATTA
1 TATTA
118305 GTTATAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:118422 original size:13 final size:13
Alignment explanation
Indices: 118406--118439 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
118396 TTATATTACT
118406 TATTAATAATAAA
1 TATTAATAATAAA
* *
118419 TATTAATAATTAC
1 TATTAATAATAAA
118432 TATTAATA
1 TATTAATA
118440 TTTAATTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TATTAATAATAAA
Found at i:118599 original size:9 final size:9
Alignment explanation
Indices: 118560--118592 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
118550 AATAACTATT
118560 TTATTATAA
1 TTATTATAA
118569 -TATTATAA
1 TTATTATAA
*
118577 TTATCATAA
1 TTATTATAA
118586 TTATTAT
1 TTATTAT
118593 TAATATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATTATAA
Found at i:118725 original size:15 final size:14
Alignment explanation
Indices: 118691--118731 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
118681 TAATTATTTT
*
118691 AATTAAT-ACTATA
1 AATTAATAATTATA
118704 AATTAATAATTATA
1 AATTAATAATTATA
118718 ATATTAATAATTAT
1 A-ATTAATAATTAT
118732 TAAACATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 7 0.28
14 6 0.24
15 12 0.48
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTAATAATTATA
Found at i:118883 original size:41 final size:40
Alignment explanation
Indices: 118818--118951 Score: 105
Period size: 41 Copynumber: 3.2 Consensus size: 40
118808 TATATATTTA
* *
118818 TATTATTATTA-AGAATAATT-AATTATTATATCAATTAT
1 TATTATAATTATAAAATAATTAAATTATTATATCAATTAT
118856 T-TTAATAATTAATATAATAATTAAATTAAATTATTATAT-AATTTAT
1 TATT-ATAA-T--TATAA-AA-T-AATTAAATTATTATATCAA-TTAT
* *
118902 TACTTATAATTATAAAATAATAAAATTAATATATCAATTAT
1 TA-TTATAATTATAAAATAATTAAATTATTATATCAATTAT
*
118943 ACATTATAA
1 -TATTATAA
118952 GATTATAATA
Statistics
Matches: 77, Mismatches: 5, Indels: 25
0.72 0.05 0.23
Matches are distributed among these distances:
37 2 0.03
38 4 0.05
39 1 0.01
41 26 0.34
42 5 0.06
43 4 0.05
44 6 0.08
45 6 0.08
46 17 0.22
47 4 0.05
48 2 0.03
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (40 bp):
TATTATAATTATAAAATAATTAAATTATTATATCAATTAT
Found at i:118893 original size:46 final size:45
Alignment explanation
Indices: 118834--118930 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 45
118824 TATTAAGAAT
* *
118834 AATT-AATTATTATATCAA-TTATT-TTAATAATTAATATAATAATTA
1 AATTAAATTATTATAT-AATTTATTATT-ATAATT-ATAAAATAATAA
118879 AATTAAATTATTATATAATTTATTACTTATAATTATAAAATAATAA
1 AATTAAATTATTATATAATTTATTA-TTATAATTATAAAATAATAA
118925 AATTAA
1 AATTAA
118931 TATATCAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
45 6 0.13
46 32 0.70
47 6 0.13
48 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (45 bp):
AATTAAATTATTATATAATTTATTATTATAATTATAAAATAATAA
Found at i:118898 original size:21 final size:21
Alignment explanation
Indices: 118834--118898 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
118824 TATTAAGAAT
118834 AATT-AATTATTATATCAATTA
1 AATTAAATTATTATAT-AATTA
** *
118855 TTTTAATAATTAATATAATAATTA
1 AATT-A-AATTATTAT-ATAATTA
118879 AATTAAATTATTATATAATT
1 AATTAAATTATTATATAATT
118899 TATTACTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 8 0.24
22 8 0.24
23 1 0.03
24 15 0.44
25 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTAAATTATTATATAATTA
Found at i:119077 original size:24 final size:24
Alignment explanation
Indices: 119050--119096 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
119040 ATTTATACTA
*
119050 AATA-AATAAATTATACTATAATTT
1 AATACAATAAATTAT-CAATAATTT
*
119074 AATACTATAAATTATCAATAATT
1 AATACAATAAATTATCAATAATT
119097 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (24 bp):
AATACAATAAATTATCAATAATTT
Found at i:119804 original size:16 final size:17
Alignment explanation
Indices: 119767--119808 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
119757 TTATGAATTA
119767 AATTAATAAATAAATAAT
1 AATT-ATAAATAAATAAT
*
119785 AATTATAAATAACT-AT
1 AATTATAAATAAATAAT
119801 AATTATAA
1 AATTATAA
119809 TACAAGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.43
17 9 0.39
18 4 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
AATTATAAATAAATAAT
Found at i:119999 original size:16 final size:17
Alignment explanation
Indices: 119978--120020 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
119968 AATAATATTG
*
119978 TATAATATATT-ATAAT
1 TATAATATATTAATAAA
119994 TATAAT-TATTAATAAA
1 TATAATATATTAATAAA
120010 TATTAATATAT
1 TA-TAATATAT
120021 AGTATTATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 4 0.17
16 12 0.52
17 4 0.17
18 3 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAATATATTAATAAA
Found at i:120360 original size:55 final size:54
Alignment explanation
Indices: 120212--120371 Score: 145
Period size: 54 Copynumber: 3.0 Consensus size: 54
120202 TATAACTAAT
* *
120212 TATAATACTAAT--TAACATTAGTATAATATTAATTATTA-TAATACTTATATTATA
1 TATAATA-TAATAATAA-ATTAGTATTATTTTAA-TATTACTAATACTTATATTATA
* * * * *
120266 TCT-ATATAATAATAAAATTATTAATATTTTAA-ATAACTAAT-TTTATAATTATA
1 TATAATATAATAAT-AAATTAGTATTATTTTAATATTACTAATACTTAT-ATTATA
*
120319 TATAATATTAATAATAAATTAGTATTATTTTAATATTACTAATAGTT-TATTAT
1 TATAATA-TAATAATAAATTAGTATTATTTTAATATTACTAATACTTATATTAT
120372 TTAACTTAAT
Statistics
Matches: 85, Mismatches: 12, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
52 11 0.13
53 15 0.18
54 39 0.46
55 18 0.21
56 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (54 bp):
TATAATATAATAATAAATTAGTATTATTTTAATATTACTAATACTTATATTATA
Found at i:120372 original size:28 final size:27
Alignment explanation
Indices: 120283--120372 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 27
120273 AATAATAAAA
* *
120283 TTATTAATATTTTAA-ATAACTAAT-T
1 TTATTATTATTTTAATATTACTAATAT
* * * *
120308 TTATAATTATATATAATATTAATAATAAA
1 TTATTATTAT-TTTAATATTACTAAT-AT
*
120337 TTAGTATTATTTTAATATTACTAATAGT
1 TTATTATTATTTTAATATTACTAATA-T
120365 TTATTATT
1 TTATTATT
120373 TAACTTAATT
Statistics
Matches: 48, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
25 8 0.17
26 4 0.08
27 8 0.17
28 20 0.42
29 8 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
TTATTATTATTTTAATATTACTAATAT
Found at i:120429 original size:21 final size:20
Alignment explanation
Indices: 120405--120473 Score: 54
Period size: 21 Copynumber: 3.5 Consensus size: 20
120395 AATATCACTA
120405 ATTATATATATAATAATATTT
1 ATTATATATATAATAATA-TT
* * *
120426 ATTATAAATTTAATATTAATT
1 ATTATATATATAATAAT-ATT
* *
120447 ATAATA-ATAT-AT-ATATC
1 ATTATATATATAATAATATT
120464 ATTATATATA
1 ATTATATATA
120474 ATGATAATTG
Statistics
Matches: 38, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
17 7 0.18
18 4 0.11
19 2 0.05
20 3 0.08
21 21 0.55
22 1 0.03
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTATATATATAATAATATT
Found at i:121304 original size:15 final size:15
Alignment explanation
Indices: 121275--121483 Score: 75
Period size: 15 Copynumber: 14.1 Consensus size: 15
121265 TTTTATATAT
121275 ATAATAATAATTATTA
1 ATAATAAT-ATTATTA
* *
121291 ATATTAATATTATTT
1 ATAATAATATTATTA
* *
121306 ATAATAAAATAATTTA
1 ATAATAATATTA-TTA
*
121322 ATTAATAAGATTATCTA
1 A-TAATAATATTAT-TA
*
121339 AT-ATAATATAATT-
1 ATAATAATATTATTA
* *
121352 TTATTAAT-TATATT-
1 ATAATAATAT-TATTA
*
121366 ATACTAA-ATTATTA
1 ATAATAATATTATTA
*
121380 TTAATAATATTATTA
1 ATAATAATATTATTA
* *
121395 TTTAA-ATTATTATTAA
1 -ATAATAATATTATT-A
*
121411 ATAA-GATATTTATTA
1 ATAATAATA-TTATTA
*
121426 AT-A-AATATTGTTA
1 ATAATAATATTATTA
*
121439 CTCCAA-AATATTAATTA
1 AT--AATAATATT-ATTA
* *
121456 A-ACTACTA--ATTA
1 ATAATAATATTATTA
121468 ATAATAATATTATTA
1 ATAATAATATTATTA
121483 A
1 A
121484 AGTTATAATA
Statistics
Matches: 144, Mismatches: 30, Indels: 39
0.68 0.14 0.18
Matches are distributed among these distances:
12 5 0.03
13 17 0.12
14 24 0.17
15 54 0.38
16 29 0.20
17 15 0.10
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (15 bp):
ATAATAATATTATTA
Found at i:121324 original size:38 final size:38
Alignment explanation
Indices: 121261--121334 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
121251 AGATATATTA
* * *
121261 ATTATTTTATATATATAATAATAATTATTAATATTAAT
1 ATTATTTTATATATAAAATAATAATTAATAAGATTAAT
121299 ATTA-TTTATA-ATAAAATAATTTAATTAATAAGATTA
1 ATTATTTTATATATAAAATAA--TAATTAATAAGATTA
121335 TCTAATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 8 0.26
37 6 0.19
38 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (38 bp):
ATTATTTTATATATAAAATAATAATTAATAAGATTAAT
Found at i:121364 original size:22 final size:25
Alignment explanation
Indices: 121337--121410 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 25
121327 TAAGATTATC
121337 TAATATAATA-T-AATT-TTATTAA
1 TAATATAATACTAAATTATTATTAA
* *
121359 TTATATTATACTAAATTATTATTAA
1 TAATATAATACTAAATTATTATTAA
* *
121384 TAATATTATTATTTAAATTATTATTAA
1 TAATA-TAATA-CTAAATTATTATTAA
121411 ATAAGATATT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
22 8 0.20
23 1 0.02
24 4 0.10
25 11 0.27
26 3 0.07
27 14 0.34
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (25 bp):
TAATATAATACTAAATTATTATTAA
Found at i:121367 original size:32 final size:32
Alignment explanation
Indices: 121256--121372 Score: 96
Period size: 32 Copynumber: 3.6 Consensus size: 32
121246 ATGTAAGATA
* *
121256 TATTAATTATTTTATAT-ATATAATAATAATTAT
1 TATTAATTATATTATCTAATATAAT-ATAATT-T
* * *
121289 TAAT-ATTAATATTAT-TTATAATAAAATAATTT
1 TATTAATT-ATATTATCTAAT-ATAATATAATTT
* * *
121321 AATTAATAAGATTATCTAATATAATATAATTT
1 TATTAATTATATTATCTAATATAATATAATTT
121353 TATTAATTATATTATACTAA
1 TATTAATTATATTAT-CTAA
121373 ATTATTATTA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
32 36 0.55
33 26 0.39
34 4 0.06
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (32 bp):
TATTAATTATATTATCTAATATAATATAATTT
Found at i:121408 original size:27 final size:25
Alignment explanation
Indices: 121348--121410 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
121338 AATATAATAT
*
121348 AATT-TTATTAATTATATTATACTA
1 AATTATTATTAATAATATTATACTA
*
121372 AATTATTATTAATAATATTATTATTTA
1 AATTATTATTAATAATATTA-TA-CTA
121399 AATTATTATTAA
1 AATTATTATTAA
121411 ATAAGATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 4 0.12
25 14 0.41
26 2 0.06
27 14 0.41
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
AATTATTATTAATAATATTATACTA
Found at i:121420 original size:27 final size:27
Alignment explanation
Indices: 121361--121420 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
121351 TTTATTAATT
*
121361 ATATTATACTAAATTATTATTAATAAT
1 ATATTATACTAAATTATTATTAATAAG
*
121388 ATTATTAT-TTAAATTATTATTAAATAAG
1 A-TATTATACTAAATTATTATT-AATAAG
121416 ATATT
1 ATATT
121421 TATTAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 17 0.59
28 12 0.41
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
ATATTATACTAAATTATTATTAATAAG
Found at i:121569 original size:42 final size:44
Alignment explanation
Indices: 121522--121614 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 44
121512 GTTTCAAATA
*
121522 TATTTA-AAAAATTATTATATAGT-ATAT-TATATTAATAAT-TAG
1 TATTTACAAAAATTA-TAT-TAATGATATATATATTAATAATATAG
*
121564 TATTTATCCAAAAATTATATTAATGATATATATATTAATAATATAT
1 TATTTA--CAAAAATTATATTAATGATATATATATTAATAATATAG
121610 TATTT
1 TATTT
121615 TAATAAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
42 6 0.14
43 3 0.07
44 7 0.16
45 20 0.47
46 7 0.16
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (44 bp):
TATTTACAAAAATTATATTAATGATATATATATTAATAATATAG
Found at i:121599 original size:15 final size:15
Alignment explanation
Indices: 121579--121620 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
121569 ATCCAAAAAT
*
121579 TATATTAATGATATA
1 TATATTAATAATATA
121594 TATATTAATAATATA
1 TATATTAATAATATA
*
121609 TTATTTTAATAA
1 -TATATTAATAA
121621 ATAATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
TATATTAATAATATA
Found at i:121993 original size:16 final size:16
Alignment explanation
Indices: 121948--121993 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
121938 ACCTATATTA
121948 TTTATATATTAA-TAAT
1 TTTA-ATATTAATTAAT
121964 TTTAATAGTT-ATTAAT
1 TTTAATA-TTAATTAAT
*
121980 TTTACTATTAATTA
1 TTTAATATTAATTA
121994 TTGTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 6 0.23
16 20 0.77
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TTTAATATTAATTAAT
Found at i:122014 original size:23 final size:19
Alignment explanation
Indices: 121986--122032 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 19
121976 TAATTTTACT
121986 ATTAATTATTGTATTTAATTATA
1 ATTAATTATT-TA--TAA-TATA
122009 ATTAATTATTTATAATATA
1 ATTAATTATTTATAATATA
122028 ATTAA
1 ATTAA
122033 GCTATTAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.38
20 3 0.12
22 2 0.08
23 10 0.42
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
ATTAATTATTTATAATATA
Found at i:122080 original size:29 final size:26
Alignment explanation
Indices: 122044--122108 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 26
122034 CTATTAGATA
*
122044 AATATTAATATAAATATTAGTTATATATT
1 AATATTAATA-AAA-ATTA-TTAAATATT
*
122073 AATATTAA-ACAAATTATTAAATATT
1 AATATTAATAAAAATTATTAAATATT
122098 AATAATTAATA
1 AAT-ATTAATA
122109 CGCATGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 11 0.34
26 9 0.28
27 3 0.09
28 1 0.03
29 8 0.25
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (26 bp):
AATATTAATAAAAATTATTAAATATT
Found at i:122100 original size:25 final size:25
Alignment explanation
Indices: 122036--122106 Score: 76
Period size: 23 Copynumber: 2.9 Consensus size: 25
122026 TAATTAAGCT
* *
122036 ATTAGATAAATATTAATA-T-AAAT
1 ATTAGTTAAATATTAATATTAAAAA
*
122059 ATTAGTTATATATTAATATTAAACAA
1 ATTAGTTAAATATTAATATTAAA-AA
122085 ATTA-TTAAATATTAATAATTAA
1 ATTAGTTAAATATTAAT-ATTAA
122107 TACGCATGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 16 0.40
24 1 0.03
25 13 0.32
26 10 0.25
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (25 bp):
ATTAGTTAAATATTAATATTAAAAA
Found at i:122186 original size:10 final size:11
Alignment explanation
Indices: 122168--122200 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
122158 TTTGGTATAA
122168 ATAATTAAATT
1 ATAATTAAATT
122179 ATAA-TAAATT
1 ATAATTAAATT
122189 -TAATTAAATT
1 ATAATTAAATT
122199 AT
1 AT
122201 GATATATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.15
10 12 0.60
11 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
ATAATTAAATT
Found at i:122372 original size:12 final size:11
Alignment explanation
Indices: 122356--122396 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
122346 ATAATTATTC
122356 ATATTAATAAT
1 ATATTAATAAT
122367 AGTATTAATAAT
1 A-TATTAATAAT
* *
122379 ATTTTAATAAA
1 ATATTAATAAT
122390 ATATTAA
1 ATATTAA
122397 ATTAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 15 0.58
12 11 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
ATATTAATAAT
Found at i:122643 original size:30 final size:30
Alignment explanation
Indices: 122609--122670 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
122599 TAAATATTTA
122609 TATAGTTAAATTATATAA-TA-ATTTAATAAT
1 TATAGTT-AA-TATATAATTATATTTAATAAT
122639 TATAGTTAATATATAATTATATTTAATAAT
1 TATAGTTAATATATAATTATATTTAATAAT
122669 TA
1 TA
122671 AATATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 7 0.23
29 4 0.13
30 19 0.63
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
TATAGTTAATATATAATTATATTTAATAAT
Found at i:123294 original size:6 final size:6
Alignment explanation
Indices: 123272--123339 Score: 68
Period size: 6 Copynumber: 11.0 Consensus size: 6
123262 ATATAATATA
*
123272 ATTATAT ATT-AT AATTAAT ATTAAT -TTAAT ATTAAT AATAAAT ATTAAT
1 ATTA-AT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT -ATTAAT ATTAAT
*
123321 ATTAAT AATTAAT TTTAAT
1 ATTAAT -ATTAAT ATTAAT
123340 TTATTTATTA
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
5 7 0.13
6 30 0.57
7 16 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTAAT
Found at i:123331 original size:13 final size:13
Alignment explanation
Indices: 123269--123333 Score: 75
Period size: 13 Copynumber: 5.2 Consensus size: 13
123259 ATAATATAAT
123269 ATAATTATATATT-
1 ATAATTA-ATATTA
123282 ATAATTAATATTA
1 ATAATTAATATTA
123295 AT--TTAATATTA
1 ATAATTAATATTA
*
123306 ATAATAAATATTA
1 ATAATTAATATTA
123319 AT-ATTAATAATTA
1 ATAATTAAT-ATTA
123332 AT
1 AT
123334 TTTAATTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
11 11 0.24
12 10 0.22
13 25 0.54
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTAATATTA
Found at i:123338 original size:19 final size:19
Alignment explanation
Indices: 123285--123339 Score: 78
Period size: 19 Copynumber: 3.0 Consensus size: 19
123275 ATATATTATA
123285 ATTAAT-ATTAA-TTTAAT
1 ATTAATAATTAATTTTAAT
* *
123302 ATTAATAATAAATATTAAT
1 ATTAATAATTAATTTTAAT
123321 ATTAATAATTAATTTTAAT
1 ATTAATAATTAATTTTAAT
123340 TTATTTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 6 0.19
18 4 0.12
19 22 0.69
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAATAATTAATTTTAAT
Found at i:123419 original size:15 final size:15
Alignment explanation
Indices: 123401--123437 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
123391 AAATAATTTA
123401 ATTTAAAAATTATAT
1 ATTTAAAAATTATAT
*
123416 ATTTAATAATTATAT
1 ATTTAAAAATTATAT
123431 ATTTAAA
1 ATTTAAA
123438 TAATGAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTAAAAATTATAT
Found at i:123535 original size:22 final size:21
Alignment explanation
Indices: 123510--123569 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
123500 TATTTATAGT
123510 TATTATATTATTATAAAAACAG
1 TATTATATTATTATAAAAA-AG
* * *
123532 TATTA-AGTTATTCTAGAAAAT
1 TATTATA-TTATTATAAAAAAG
123553 TATTATATATATTATAA
1 TATTATAT-TATTATAA
123570 TGTTAGATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (21 bp):
TATTATATTATTATAAAAAAG
Found at i:124933 original size:179 final size:176
Alignment explanation
Indices: 124379--124934 Score: 542
Period size: 180 Copynumber: 3.1 Consensus size: 176
124369 ATTTTAAATC
* * * * * *
124379 ACTTATTAATTTTTAAAATATTAATAGATTAGTATTACTTTATTCTGAATAAACTTATATGAACA
1 ACTTATTAATTTTT-GAATATTAATAGATTCGTATTATTTTATTTTGAATAAGCTTGTATGAACA
**
124444 -AAAACATTTGTTTTATGACAAAACAAAAAATAATAATGATTTGAAATATATAATTGTTCAAATA
65 GAAAA-A-TTGTTTTATGACAAAACAAAAGGTAATAATGATTTGAAATATATAATTGTTCAAATA
* * *
124508 GT-ATAATTTTTTCAATTGGTTAGGTAAACAAAATTATTTTTTTAATCTCTT
128 GTCATAATTATTTAAATTGGTTAGGAAAAC-AAA-T-TTTTTTTAATCTCTT
* * * * * * * * **
124559 ATTTATTAATTTTTGAAATATTAACAAATTCATTTTATTTTATTTCGAATAAGCTAGTTTGAATT
1 ACTTATTAATTTTTG-AATATTAATAGATTCGTATTATTTTATTTTGAATAAGCTTGTATGAACA
* * * * * * * * *
124624 GAGAAAATTATTTTATGACAAGA-TAAAGGTCATAACGATTTGAATTAAATAATTGTTCATATAT
65 GA-AAAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTGAAATATATAATTGTTCAAATAG
* * * * *
124688 TCTTAACTATTTGAATTGGTTCGGAAAACAAATTTATTTTTAAGTCCCTT
129 TCATAATTATTTAAATTGGTTAGGAAAACAAATTT-TTTTTAA-TCTCTT
* * *
124738 AGTTATTAATTTTTTGAATATTATTAGATTCGTATTGTTTTATTTTGAATAAGCTTGTATGAACA
1 ACTTATTAA-TTTTTGAATATTAATAGATTCGTATTATTTTATTTTGAATAAGCTTGTATGAACA
* * * * * *
124803 GAAATAATTGTTTTATGATAAAACAAAAGGTTATAATGATATGAAGTATAGAATTGTTTAAATAG
65 GAAA-AATTGTTTTATGACAAAACAAAAGGTAATAATGATTTGAAATATATAATTGTTCAAATAG
* * *
124868 TCATAATTATTTAAACTGGTTTGGAAAACAAATTCGTTTTTTAAACTCTT
129 TCATAATTATTTAAATTGGTTAGGAAAACAAATT--TTTTTTAATCTCTT
124918 ACTTATTAATTTTTGAA
1 ACTTATTAATTTTTGAA
124935 ATTGTTAATT
Statistics
Matches: 298, Mismatches: 67, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
177 2 0.01
178 10 0.03
179 112 0.38
180 161 0.54
181 9 0.03
182 4 0.01
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.44
Consensus pattern (176 bp):
ACTTATTAATTTTTGAATATTAATAGATTCGTATTATTTTATTTTGAATAAGCTTGTATGAACAG
AAAAATTGTTTTATGACAAAACAAAAGGTAATAATGATTTGAAATATATAATTGTTCAAATAGTC
ATAATTATTTAAATTGGTTAGGAAAACAAATTTTTTTTAATCTCTT
Found at i:125110 original size:21 final size:20
Alignment explanation
Indices: 125072--125127 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
125062 ATTATAATAT
125072 ATAATATT-T-ATATTAACTA
1 ATAATATTATAAT-TTAACTA
125091 ATAATATTAATAATTTAACTA
1 ATAATATT-ATAATTTAACTA
*
125112 ATACTA-TATAATTTAA
1 ATAATATTATAATTTAA
125128 TTTAAATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 17 0.52
20 1 0.03
21 13 0.39
22 2 0.06
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAATATTATAATTTAACTA
Found at i:125439 original size:20 final size:19
Alignment explanation
Indices: 125366--125440 Score: 61
Period size: 21 Copynumber: 3.9 Consensus size: 19
125356 TAACTTTAGA
125366 AATAT-TAATAAATTA-TAT
1 AATATATAAT-AATTATTAT
125384 AA-ATAT-ATAATTATTTAT
1 AATATATAATAATTA-TTAT
*
125402 AAT-TATAAAGTAACTATTCAT
1 AATATAT-AA-TAATTATT-AT
125423 AATATATAATAATTATTA
1 AATATATAATAATTATTA
125441 AATTATGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
16 5 0.11
17 4 0.09
18 11 0.24
19 1 0.02
20 10 0.22
21 12 0.26
22 3 0.07
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (19 bp):
AATATATAATAATTATTAT
Found at i:125606 original size:12 final size:13
Alignment explanation
Indices: 125591--125623 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
125581 TAAATAATGT
125591 TATAATAAT-AGA
1 TATAATAATAAGA
*
125603 TATAATAATAAGC
1 TATAATAATAAGA
125616 TATAATAA
1 TATAATAA
125624 AATAATAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (13 bp):
TATAATAATAAGA
Found at i:125716 original size:21 final size:20
Alignment explanation
Indices: 125692--125751 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
125682 TAATTATACC
*
125692 TAATATTGATATTATTATTTG
1 TAATATT-ATATTATTATTTA
* *
125713 TAATCTATATATTAATTAGTTA
1 TAATAT-TATATT-ATTATTTA
*
125735 TAATATTATTTTATTAT
1 TAATATTATATTATTAT
125752 AATATAGATA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 4 0.13
21 15 0.48
22 12 0.39
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
TAATATTATATTATTATTTA
Found at i:126963 original size:12 final size:11
Alignment explanation
Indices: 126917--126991 Score: 50
Period size: 12 Copynumber: 6.6 Consensus size: 11
126907 ATAGTTATTA
126917 ATATTAAT-A-
1 ATATTAATAAT
126926 ATATTAAT-AT
1 ATATTAATAAT
*
126936 TTATT-ATAAAT
1 ATATTAAT-AAT
126947 AATATTAATCAAT
1 -ATATTAAT-AAT
126960 ATATTAATTAAT
1 ATATTAA-TAAT
*
126972 AAATTAAATAAT
1 ATATT-AATAAT
126984 ATTATTAA
1 A-TATTAA
126992 ATAAATTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
9 11 0.21
10 4 0.08
11 2 0.04
12 25 0.47
13 11 0.21
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
ATATTAATAAT
Found at i:126971 original size:22 final size:19
Alignment explanation
Indices: 126917--127018 Score: 54
Period size: 22 Copynumber: 5.3 Consensus size: 19
126907 ATAGTTATTA
126917 ATATTAATAATATTAATATTT
1 ATATTAATAATATTAATA--T
*
126938 ATTATAAATAATATTAATCAAT
1 A-TATTAATAATATTAAT--AT
126960 ATATTAATTAATA--AAT-T
1 ATATTAA-TAATATTAATAT
* *
126977 A-AATAATATTATTAA-AT
1 ATATTAATAATATTAATAT
*
126994 AAATTAA-AACTGATTAATAT
1 ATATTAATAA-T-ATTAATAT
127014 ATATT
1 ATATT
127019 GTTTATAACT
Statistics
Matches: 63, Mismatches: 7, Indels: 23
0.68 0.08 0.25
Matches are distributed among these distances:
15 4 0.06
16 4 0.06
17 7 0.11
18 5 0.08
19 5 0.08
20 9 0.14
21 6 0.10
22 22 0.35
24 1 0.02
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (19 bp):
ATATTAATAATATTAATAT
Found at i:127195 original size:6 final size:6
Alignment explanation
Indices: 127175--127219 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
127165 TTTAATTAAA
* *
127175 AATTAT -ATTAC AATTAT AATTAT AATTAT AA-TAT TATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTAT AATTA
127220 ATTTAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 8 0.24
6 25 0.76
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTAT
Found at i:127203 original size:23 final size:23
Alignment explanation
Indices: 127175--127219 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
127165 TTTAATTAAA
*
127175 AATTATATTACAATTATAATTAT
1 AATTATAATACAATTATAATTAT
**
127198 AATTATAATATTATTATAATTA
1 AATTATAATACAATTATAATTA
127220 ATTTAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTATAATACAATTATAATTAT
Found at i:127435 original size:15 final size:16
Alignment explanation
Indices: 127417--127457 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
127407 TAATAATCTA
*
127417 AATTATAATTT-TTAT
1 AATTATAATTTAATAT
127432 AATTATAAATTTAATAT
1 AATTAT-AATTTAATAT
127449 AATT-TAATT
1 AATTATAATT
127458 ATATTACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 10 0.43
16 6 0.26
17 7 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATTATAATTTAATAT
Found at i:127612 original size:25 final size:26
Alignment explanation
Indices: 127584--127638 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
127574 TTTATGAACT
* *
127584 ATATTATATATAATTAATATTT-ATA
1 ATATTACAAATAATTAATATTTAATA
* *
127609 ATATTCCAAATAATTATTATTTAATA
1 ATATTACAAATAATTAATATTTAATA
127635 ATAT
1 ATAT
127639 ATTAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (26 bp):
ATATTACAAATAATTAATATTTAATA
Found at i:127642 original size:18 final size:17
Alignment explanation
Indices: 127563--127646 Score: 52
Period size: 18 Copynumber: 4.8 Consensus size: 17
127553 ATATAATGTA
127563 AATATATTATATTT-AT
1 AATATATTATATTTAAT
*
127579 GAACTATATTATATATAATT
1 -AA-TATATTATATTTAA-T
*
127599 AATAT-TTATAATATTCCA-
1 AATATATTAT-AT-TT-AAT
127617 AATA-ATTATTATTTAAT
1 AATATATTA-TATTTAAT
127634 AATATATTA-ATTT
1 AATATATTATATTT
127647 TTGAGATATA
Statistics
Matches: 53, Mismatches: 4, Indels: 21
0.68 0.05 0.27
Matches are distributed among these distances:
16 5 0.09
17 12 0.23
18 29 0.55
19 5 0.09
20 2 0.04
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (17 bp):
AATATATTATATTTAAT
Found at i:127743 original size:13 final size:14
Alignment explanation
Indices: 127727--127773 Score: 62
Period size: 13 Copynumber: 3.4 Consensus size: 14
127717 TATATAATAA
127727 ATATATATT-ATTT
1 ATATATATTAATTT
127740 ATATATATTAATTT
1 ATATATATTAATTT
*
127754 ATAATATATTCA-TT
1 AT-ATATATTAATTT
127768 ATATAT
1 ATATAT
127774 TAATATTGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 13 0.42
14 10 0.32
15 8 0.26
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATATATTAATTT
Found at i:127790 original size:26 final size:28
Alignment explanation
Indices: 127741--127810 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 28
127731 ATATTATTTA
127741 TATATATTAAT-TTATAATATATTC-AT
1 TATATATTAATATTATAATATATTCTAT
127767 TATATATTAATATTGAT-ATA-ATTCTAT
1 TATATATTAATATT-ATAATATATTCTAT
* *
127794 TATTTA-TAATAATATAA
1 TATATATTAATATTATAA
127811 ACAATAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 2 0.05
26 22 0.58
27 12 0.32
28 2 0.05
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (28 bp):
TATATATTAATATTATAATATATTCTAT
Found at i:127875 original size:15 final size:14
Alignment explanation
Indices: 127857--127898 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
127847 AATTTAATAT
127857 TATATTAATTAATTC
1 TATATTAA-TAATTC
127872 TATATTAATAATT-
1 TATATTAATAATTC
127885 TGATATATAATAAT
1 T-ATAT-TAATAAT
127899 GTAATTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:128026 original size:21 final size:20
Alignment explanation
Indices: 128002--128055 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
127992 TGACATTATT
128002 TTAATAATATATTTATATCAA
1 TTAATAATATATTTA-ATCAA
* * *
128023 TTAATATTATAATTAATTAA
1 TTAATAATATATTTAATCAA
*
128043 ATAATTAATATAT
1 TTAA-TAATATAT
128056 AATTATATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAATAATATATTTAATCAA
Found at i:128203 original size:10 final size:10
Alignment explanation
Indices: 128172--128206 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
128162 TTTACAATTA
128172 TTATTATAAT
1 TTATTATAAT
*
128182 ATATTATGAAT
1 TTATTAT-AAT
128193 TTATTATAAT
1 TTATTATAAT
128203 TTAT
1 TTAT
128207 AAGCTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (10 bp):
TTATTATAAT
Found at i:128305 original size:15 final size:15
Alignment explanation
Indices: 128280--128321 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
128270 TAACAAGAGC
*
128280 AATATAGTTATATTT
1 AATATAATTATATTT
*
128295 ATTATAATTATTATTT
1 AATATAATTA-TATTT
128311 AAT-TAATTATA
1 AATATAATTATA
128322 ATAATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 2 0.09
15 14 0.61
16 7 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
AATATAATTATATTT
Found at i:128395 original size:20 final size:20
Alignment explanation
Indices: 128367--128410 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
128357 TATATTTCTT
*
128367 ATTATTATTATATGTT-TAAA
1 ATTAATATTATAT-TTATAAA
128387 ATTAATATTATATTTATAAA
1 ATTAATATTATATTTATAAA
128407 ATTA
1 ATTA
128411 TTAATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTAATATTATATTTATAAA
Found at i:128893 original size:182 final size:180
Alignment explanation
Indices: 128627--129033 Score: 419
Period size: 182 Copynumber: 2.3 Consensus size: 180
128617 AACTTCTATT
* * * *
128627 AACTGAAACAATTGTTTTATAATAAATCAAAAGGTTATAACAATTTTAAATAGACAATTGTTCAA
1 AACTGAAACAATTGTTTTATAATAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTATTCAA
* * ** * *
128692 ATAGTGATAACTCTTTGAACT-TGTTCGATAAATAGATTTATTTTTTAAAATCTCTTT-CTTATT
66 ATAGTCATAACTATTTGAACTAAATTCGATAAACA-A--AATTTTTTAAAATCT-TTTGCTTATT
* * **
128755 AATTTTTCAAATGTTAATAAATTAGTATTAATT-TATTTTAAATAAGCTTGTATG
127 AATTTTTCAAATATTAATAAATTAGTATT-ATTCTAATCAAAATAAGCTTGTATG
* * * * *
128809 AACTGAAACAATTTTTTTATGACTAAA-CAAAATGTTAGAACAATTTCAAATAAATAATTATTCT
1 AACTGAAACAATTGTTTTAT-AATAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTATTCA
* * * *
128873 AATAGTCTTAATTATTTGAACTAAATTCGGTAAACAAAATTTTTTTAAATCTTTTGCTTATTAAT
65 AATAGTCATAACTATTTGAACTAAATTCGATAAACAAAATTTTTTAAAATCTTTTGCTTATTAAT
* * *
128938 TTTTGAAATATTATTAAATTAGTATTATTCTAATCAAAATAAGCTTGTACG
130 TTTTCAAATATTAATAAATTAGTATTATTCTAATCAAAATAAGCTTGTATG
* * * * ** * *
128989 TAC-AAAACAATTGTTTTACAACAAAAGAAAAGGTTATAACGATTT
1 AACTGAAACAATTGTTTTATAATAAATCAAAAGGTTAGAACAATTT
129034 GTTCATATAG
Statistics
Matches: 184, Mismatches: 36, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
178 4 0.02
179 34 0.18
180 64 0.35
182 68 0.37
183 14 0.08
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (180 bp):
AACTGAAACAATTGTTTTATAATAAATCAAAAGGTTAGAACAATTTCAAATAAACAATTATTCAA
ATAGTCATAACTATTTGAACTAAATTCGATAAACAAAATTTTTTAAAATCTTTTGCTTATTAATT
TTTCAAATATTAATAAATTAGTATTATTCTAATCAAAATAAGCTTGTATG
Found at i:129386 original size:182 final size:178
Alignment explanation
Indices: 129155--129498 Score: 415
Period size: 182 Copynumber: 1.9 Consensus size: 178
129145 AAATAGTATG
* * * *
129155 AACAAAACCAATTGTTTGATGACAAAAAAAAAAGGTCATAACAATTTGAAATAGATAATTATTCA
1 AACAAAAACAATTATTTGATGACAAAAAAAAAAGGTAATAACAATTTGAAATAGATAATTACTCA
* * *
129220 AATAGTCAAAACT-ATTTGAAATGGTTTGGTAAACAGATTTAACTTTT-TAATTCTCTTACTGAT
66 AATAGTCAAAA-TAACTTGAAATGGTTTGGTAAACAGAATT-A-TTTTCTAAATCTCTTA-T-A-
*
129283 TAATTTTCTAAATATCAATAAATTAGTATTATTTTATTTCGAACAAACTTATGTT
125 -AATTTTCTAAATATCAATAAATTAGTATTATTCTATTTCGAACAAACTTATGTT
* * ** *
129338 AACAAAAACAATTATTTTATGACAAAACAAAAA-GTAATAATGATTTGAAATAGATAATTGCTCA
1 AACAAAAACAATTATTTGATGACAAAAAAAAAAGGTAATAACAATTTGAAATAGATAATTACTCA
* * * *
129402 AATAGTTATAATAACTTGAACTGGTTTGGTAAATAGAATTATTTTCTAAATCTCTTATAAATTTT
66 AATAGTCAAAATAACTTGAAATGGTTTGGTAAACAGAATTATTTTCTAAATCTCTTATAAATTTT
* * * *
129467 TTAAATATTAATAAATTATTTTTATTCTATTT
131 CTAAATATCAATAAATTAGTATTATTCTATTT
129499 TGAATATGCT
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
177 33 0.24
179 1 0.01
180 5 0.04
181 12 0.09
182 58 0.42
183 29 0.21
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (178 bp):
AACAAAAACAATTATTTGATGACAAAAAAAAAAGGTAATAACAATTTGAAATAGATAATTACTCA
AATAGTCAAAATAACTTGAAATGGTTTGGTAAACAGAATTATTTTCTAAATCTCTTATAAATTTT
CTAAATATCAATAAATTAGTATTATTCTATTTCGAACAAACTTATGTT
Found at i:129640 original size:54 final size:53
Alignment explanation
Indices: 129540--129644 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 53
129530 TTTATGACCA
* * *
129540 AACAAAAGGTCATAACATGAAATAAATAATTGTTCATATAGTATTAACTATTTG
1 AACAAAAAGTCATAACATGAAATAAATAAATGTTCATATAGAATTAA-TATTTG
129594 AACAAAAAGTCATAACAATTTGAAATAAATAAATGTT-A-ATA-AATTAATATT
1 AACAAAAAGTCATAAC-A--TGAAATAAATAAATGTTCATATAGAATTAATATT
129645 ATTTTATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
53 4 0.09
54 20 0.44
55 4 0.09
56 1 0.02
57 16 0.36
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.32
Consensus pattern (53 bp):
AACAAAAAGTCATAACATGAAATAAATAAATGTTCATATAGAATTAATATTTG
Found at i:129960 original size:176 final size:174
Alignment explanation
Indices: 129624--130678 Score: 672
Period size: 177 Copynumber: 5.9 Consensus size: 174
129614 TGAAATAAAT
* * * * * * * * *
129624 AAATGTTAATAAATTAATATTATTTTATTTCGAATAAGCTTTTATGAACTGAAACAACTATTATA
1 AAATATTAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATG-ATTAAAACAATTGTTTTA
* * * * * * * *
129689 T-AGCTAAACAAAAGGTCAAAACTATTTAAAATT-GATAATTATTCTAATAGTCTTAACTATTTG
65 TGA-C-AAA-AAAAGATCATAACAATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTTG
*
129752 AACTAG-TTCGGCAAAA-ACATTTATTTTTTAAATCTCTTGTTAATTTTTG
127 AACTAGTTTC-G-AAAACA-ATTTAGTTTTTAAATCTCTTGTTAATTTTTG
* * *
129801 GAATATTATTAAATTAGTATTATTTT-TATCCGAATAAGCTTGGATGATTAGAAACAATTGTTTT
1 AAATATTAATAAATTAGTATTATTTTAT-TCCGAATAAGCTTGTATGATTA-AAACAATTGTTTT
* ** * *
129865 ATGAGAAAAGAAAGATCATAATGATTTGAGATTA-ATATTTGTTTAAATAGTCATAACTATTTGA
64 ATGACAAAA-AAAGATCATAACAATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTTGA
*
129929 ACTAGTTTGGAAAACAATTTTAGTTTTTAAATCTCTTGCTTACTAATTTTCT-
128 ACTAGTTTCGAAAACAA-TTTAGTTTTTAAATCTCTTG--T--TAATTTT-TG
* * * * * *
129981 AAATATTAATAAAGTAGTATTATTTTATTTCAAATAAATCTT-TATGAACTAAAACAATTGCTTT
1 AAATATTAATAAATTAGTATTATTTTATTCCGAAT-AAGCTTGTATG-ATTAAAACAATTGTTTT
* * * * * *
130045 ATGACAAAATAAAAGGTCATAACAACTTTAAATAGTTAGAATGATCGTTCAAATAGTTA-AATCT
64 ATGAC-AAA-AAAAGATCATAACAA-TTT-GAGA-TTAG-ATAATTGTTCAAATAGTCATAA-CT
* * *
130109 ATTTGAACTTG-TTCGATAAATAATTT-G-TTTTAAATCTCTTTCTCATTAATTTTTTG
122 ATTTGAACTAGTTTCGA-AAACAATTTAGTTTTTAAATCTC--T-T-GTTAA-TTTTTG
* * * * * * *
130165 -AATGTTAATAAATTAGTATTATTTTATTCTGGAT-AGACTTGTATTAATCAAAATAAGTGTTTT
1 AAATATTAATAAATTAGTATTATTTTATTCCGAATAAG-CTTGTA-TGATTAAAACAATTGTTTT
* * * *
130228 ATGACTAAACAAAATG-TCAAAACAATTTGA-AATAGATAATTGTTCTAATAGTC-TTA--ATTT
64 ATGAC-AAA-AAAA-GATCATAACAATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTT
* * * * *
130288 GAA-TTGCTTCGACAAACATATTTATTTTTTAAATTTCTTACTTATTATTTTTTG
126 GAACTAGTTTCGA-AAACA-ATTTAGTTTTTAAA--TC-T-CTTGTTAATTTTTG
* * * ** *
130342 AAATATTATTAAATTAGTATTATTTTAATCCGAATAAGCTTGAATGAAAAAAATAATTGTTTTAT
1 AAATATTAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATTAAAACAATTGTTTTAT
** * *
130407 GACAAAATAAAGATCATAATGATTTGAGA-TAGATAATTATTCAAATAGTCATAACTATTTAAAC
66 GACAAAA-AAAGATCATAACAATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTTGAAC
*
130471 TA-TTTCAGAAAACAGATTTAGTTTTTAAATCTCTTGTTAA-TTTTC
130 TAGTTTC-GAAAACA-ATTTAGTTTTTAAATCTCTTGTTAATTTTTG
* * * ** * ** *
130516 AAGATATTGATAGATTAGTATTATTTTATTCTGAATAATTTTGCATGAACAATAACAATTATTTT
1 AA-ATATTAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATTAA-AACAATTGTTTT
* * * *
130581 ACGACAAAACAAAAGGTCATAACAATTTGAAGA--AGATAATTGTTCAAATGGAT-ATGACTATT
64 ATGAC-AAA-AAAAGATCATAACAATTTG-AGATTAGATAATTGTTCAAATAG-TCATAACTATT
* *
130643 TGAACTTG-TTCAATAAACAGATTT-GTTTTTTAAATC
125 TGAACTAGTTTCGA-AAACA-ATTTAG-TTTTTAAATC
130679 CCTTATCTAT
Statistics
Matches: 693, Mismatches: 122, Indels: 126
0.74 0.13 0.13
Matches are distributed among these distances:
174 9 0.01
175 70 0.10
176 131 0.19
177 152 0.22
178 67 0.10
179 33 0.05
180 61 0.09
181 27 0.04
182 11 0.02
183 79 0.11
184 10 0.01
185 11 0.02
186 32 0.05
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (174 bp):
AAATATTAATAAATTAGTATTATTTTATTCCGAATAAGCTTGTATGATTAAAACAATTGTTTTAT
GACAAAAAAAGATCATAACAATTTGAGATTAGATAATTGTTCAAATAGTCATAACTATTTGAACT
AGTTTCGAAAACAATTTAGTTTTTAAATCTCTTGTTAATTTTTG
Found at i:130340 original size:872 final size:856
Alignment explanation
Indices: 128763--130357 Score: 1758
Period size: 872 Copynumber: 1.8 Consensus size: 856
128753 TTAATTTTTC
* * * * *
128763 AAATGTTAATAAATTAGTATTAATTTATTTTAAATAAGCTTGTATGAACTGAAACAATTTTTTTA
1 AAATGTTAATAAATTAATATTAATTTATTTCAAATAAGCTTGTATGAACTGAAACAACTATTATA
* * * * *
128828 TGACTAAACAAAATGTTAGAACAATTTCAAATAAATAATTATTCTAATAGTCTTAATTATTTGAA
66 TGACTAAACAAAAGGTCAAAACAATTTAAAATAAATAATTATTCTAATAGTCTTAACTATTTGAA
*
128893 CTAAATTCGGTAAACAAAATTTTTTTAAATCTTTTGCTTATTAATTTTTGAAATATTATTAAATT
131 CTAAATTCGGCAAACAAAATTTTTTTAAATC--TTGCTTATTAATTTTTGAAATATTATTAAATT
* *
128958 AGTATTATTCTAATCAAAATAAGCTTGTACGTACAAAACAATTGTTTTACAACAAAAGAAAAGGT
194 AGTATTATTCTAATCAAAATAAGCTTGGACGTACAAAACAATTGTTTTACAAAAAAAGAAAAGGT
* * * * ** *
129023 TATAACGATTTGTTCATATAGCCATAACTATTTGAATTGGTTTAGCAATTAGATTTATTTTTTAA
259 TATAACGATTTGTTCAAATAGCCATAACTATTTGAACTAGTTTAGAAAACAGATTTAGTTTTTAA
* * * * * * *
129088 TTTTTTTGGTTATTAAGTTTCAAAATATTATTAAATTGATATTATTTTTTCCAAATAAAATAGTA
324 ATCTCTTGCTTACTAAGTTTCAAAATATTAATAAATAGATATTATTTTTTCCAAATAAAATAGTA
*
129153 TGAACAAAACCAATTGTTTGATGACAAAAAAAAAAGGTCATAACAATTTGAAATAGATAATTATT
389 TGAACAAAACCAATTGTTTGATGACAAAAAAAAAAGGTCATAACAATTTGAAATAGAGAATTATT
* * * * *
129218 CAAATAGTCAAAACTATTTGAAATGGTTTGGTAAACAGATTTAACTTTTTAATTCTCTTACTGAT
454 CAAATAGTCAAAACTATTTGAAATGGTTCGATAAACAGATTT-A-GTTTTAAATCTCTTACTCAT
*
129283 TAATTTTCTAAATATCAATAAATTAGTATTATTTTATTTCGAACAAACTTATGTTAACAAAAACA
517 TAATTTTCTAAATATCAATAAATTAGTATTATTTTATTTCGAACAAACTTATATTAACAAAAACA
* **
129348 ATTATTTTATGACAAAACAAAAAGTAATAATGATTTGAAATAGATAATTGCTCAAATAGTTATAA
582 AGTATTTTATGACAAAACAAAAAGTAATAACAATTTGAAATAGATAATTGCTCAAATAGTTATAA
* * ** *
129413 TAACTTGAACTGGTTTGGTAAATAGAATTATTTTCTAAATCTCTTATAAATTTTTT-AAATATTA
647 T-A-TTGAACTGCTTCGACAAACAGAATTATTTTCTAAATCTCTTATAAATTTTTTGAAATATTA
129477 ATAAATTATTTTTATTCTATTTTGAATATGCTTGTATGAGCTGAAATAATTGTTTTATGACCAAA
710 ATAAATTATTTTTATTCTATTTTGAATATGCTTGTATGAGCTGAAATAATTGTTTTATGACCAAA
129542 CAAAAGGTCATAACATGAAATAAATAATTGTTCATATAGTATTAACTATTTGAACAAAAAGTCAT
775 CAAAAGGTCATAACATGAAATAAATAATTGTTCATATAGTATTAACTATTTGAACAAAAAGTCAT
129607 AACAATTTGAAATAAAT
840 AACAATTTGAAATAAAT
* * *
129624 AAATGTTAATAAATTAATATTATTTTATTTCGAATAAGCTTTTATGAACTGAAACAACTATTATA
1 AAATGTTAATAAATTAATATTAATTTATTTCAAATAAGCTTGTATGAACTGAAACAACTATTATA
* **
129689 T-AGCTAAACAAAAGGTCAAAACTATTTAAAATTGATAATTATTCTAATAGTCTTAACTATTTGA
66 TGA-CTAAACAAAAGGTCAAAACAATTTAAAATAAATAATTATTCTAATAGTCTTAACTATTTGA
* * * *
129753 ACT-AGTTCGGCAAA-AACATTTATTTTTTAAATC-T-CTTGTTAATTTTTGGAATATTATTAAA
130 ACTAAATTCGGCAAACAA-A-AT-TTTTTTAAATCTTGCTTATTAATTTTTGAAATATTATTAAA
* * ** * * *
129814 TTAGTATTATTTTTATCCGAATAAGCTTGGATGATTA-GAAACAATTGTTTTATGAGAAAAGAAA
192 TTAGTATTATTCTAATCAAAATAAGCTTGGACG--TACAAAACAATTG-TTT-T-ACAAAA-AAA
* * * * *
129878 GATCATAATGATTTGAGATTAA-TATTTGTTTAAATAGTCATAACTATTTGAACTAGTTTGGAAA
251 GA--A-AA-G-GTT---A-TAACGATTTGTTCAAATAGCCATAACTATTTGAACTAGTTTAGAAA
* *
129942 ACA-ATTTTAGTTTTTAAATCTCTTGCTTACTAATTTTCTAAATATTAATAAAGTAG-TATTATT
307 ACAGA-TTTAGTTTTTAAATCTCTTGCTTACTAAGTTTCAAAATATTAATAAA-TAGATATTATT
* ** *
130005 TTATTTCAAAT-AAATCTTTATGAACTAAAA-CAATTGCTTT-ATGAC-AAAATAAAAGGTCATA
370 TT-TTCCAAATAAAAT-AGTATGAAC-AAAACCAATTG-TTTGATGACAAAAAAAAAAGGTCATA
* * * * * *
130066 ACAACTTT-AAATAGTTAGAATGATCGTTCAAATAGTTAAATCTATTTGAACTTGTTCGATAAAT
431 ACAA-TTTGAAATAG--AGAAT--T-ATTCAAATAGTCAAAACTATTTGAAATGGTTCGATAAAC
* * * * *
130130 A-ATTT-GTTTTAAATCTCTTTCTCATTAATTTTTTGAATGTTAATAAATTAGTATTATTTTA-T
490 AGATTTAGTTTTAAATCTCTTACTCATTAATTTTCTAAATATCAATAAATTAGTATTATTTTATT
* * * * * * * *
130192 TCTGGATAGACTTGTATTAATC-AAAATAAGTGTTTTATGACTAAACAAAATGTCAA-AACAATT
555 TC-GAACAAACTTATATTAA-CAAAAACAAGTATTTTATGACAAAACAAAAAGT-AATAACAATT
* * * * * *
130255 TGAAATAGATAATTGTTCTAATAGTCT-TAAT-TTGAATTGCTTCGACAAACATATTTATTTTTT
617 TGAAATAGATAATTGCTCAAATAGT-TATAATATTGAACTGCTTCGACAAACAGAATTATTTTCT
* * *
130318 AAATTTCTTACTTATTATTTTTTGAAATATTATTAAATTA
681 AAATCTCTTA--TA-AATTTTTTGAAATATTAATAAATTA
130358 GTATTATTTT
Statistics
Matches: 597, Mismatches: 98, Indels: 66
0.78 0.13 0.09
Matches are distributed among these distances:
858 52 0.09
859 12 0.02
860 16 0.03
861 116 0.19
862 15 0.03
863 5 0.01
865 1 0.00
866 2 0.00
867 1 0.00
868 2 0.00
869 32 0.05
870 1 0.00
871 117 0.20
872 158 0.26
873 30 0.05
875 5 0.01
876 32 0.05
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (856 bp):
AAATGTTAATAAATTAATATTAATTTATTTCAAATAAGCTTGTATGAACTGAAACAACTATTATA
TGACTAAACAAAAGGTCAAAACAATTTAAAATAAATAATTATTCTAATAGTCTTAACTATTTGAA
CTAAATTCGGCAAACAAAATTTTTTTAAATCTTGCTTATTAATTTTTGAAATATTATTAAATTAG
TATTATTCTAATCAAAATAAGCTTGGACGTACAAAACAATTGTTTTACAAAAAAAGAAAAGGTTA
TAACGATTTGTTCAAATAGCCATAACTATTTGAACTAGTTTAGAAAACAGATTTAGTTTTTAAAT
CTCTTGCTTACTAAGTTTCAAAATATTAATAAATAGATATTATTTTTTCCAAATAAAATAGTATG
AACAAAACCAATTGTTTGATGACAAAAAAAAAAGGTCATAACAATTTGAAATAGAGAATTATTCA
AATAGTCAAAACTATTTGAAATGGTTCGATAAACAGATTTAGTTTTAAATCTCTTACTCATTAAT
TTTCTAAATATCAATAAATTAGTATTATTTTATTTCGAACAAACTTATATTAACAAAAACAAGTA
TTTTATGACAAAACAAAAAGTAATAACAATTTGAAATAGATAATTGCTCAAATAGTTATAATATT
GAACTGCTTCGACAAACAGAATTATTTTCTAAATCTCTTATAAATTTTTTGAAATATTAATAAAT
TATTTTTATTCTATTTTGAATATGCTTGTATGAGCTGAAATAATTGTTTTATGACCAAACAAAAG
GTCATAACATGAAATAAATAATTGTTCATATAGTATTAACTATTTGAACAAAAAGTCATAACAAT
TTGAAATAAAT
Found at i:130663 original size:177 final size:175
Alignment explanation
Indices: 129722--130945 Score: 543
Period size: 177 Copynumber: 7.0 Consensus size: 175
129712 ATTTAAAATT
* * * * * * *
129722 GATAATTATTCTAATAGTCTTAACTATTTGAACTAGTTCGGCAAAA-ACATTTATTTTTTAAATC
1 GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAG-AAAACAGATTTGTTTTTTAAATC
** * * *
129786 TCTTGTTAATTTT-TGGAATATT-ATTAAATTAGTATTATTTTTATCCGAATAAGCTTGGATGAT
65 TCTTGTTAATTTTCAAG-ATATTGA-TAGATTAGTATTATTTTAATCCGAATAAGCTTGAATGA-
* * * * * * **
129849 TAGAAACAATTGTTTTATGAGAAAAGAAAGATCATAATGATTTGAGATTA
127 AAAAAACAATTATTTTACGACAAAAAAAAGATCATAACAATTTGAGA-TA
* * * * *
129899 -ATATTTGTTTAAATAGTCATAACTATTTGAACTAGTTT-GGAAAACA-ATTT-TAGTTTTTAAA
1 GATAATTATTCAAATAGTCATAACTATTTAAACTA-TTTCAGAAAACAGATTTGT--TTTTTAAA
* * * * * * *
129960 TCTCTTGCTTACTAATTTTCTAA-ATATTAATAAAGTAGTATTATTTTATTTCAAATAAATCTT-
63 TCTCTTG--T--TAATTTTC-AAGATATTGATAGATTAGTATTATTTTAATCCGAAT-AAGCTTG
* * ** * * *
130023 TATGAACTAAAACAATTGCTTTATGACAAAATAAAAGGTCATAACAACTTT-AAATA
122 AATGAA-AAAAACAATTATTTTACGACAAAA-AAAAGATCATAACAA-TTTGAGATA
* * * * *
130079 GTTAGAATGATCGTTCAAATAGTTA-AATCTATTTGAACT-TGTTC-GATAAATA-ATTTG--TT
1 G--ATAAT--T-ATTCAAATAGTCATAA-CTATTTAAACTAT-TTCAGA-AAACAGATTTGTTTT
* ** * * * * * *
130138 TTAAATCTCTTTCTCATTAATTTT-TTGAATGTTAATAAATTAGTATTATTTTATTCTGGAT-AG
58 TTAAATCTC--T-T-GTTAATTTTCAAG-ATATTGATAGATTAGTATTATTTTAATCCGAATAAG
* * * * * * * * * *
130201 ACTTGTATTAATCAAAATAAGTGTTTTATGACTAAACAAAATG-TCAAAACAATTTGAAATA
118 -CTTGAATGAA-AAAAACAATTATTTTACGAC-AAA-AAAAAGATCATAACAATTTGAGATA
* * * * * ** * *
130262 GATAATTGTTCTAATAGTC-TTA--ATTTGAATTGCTTC-GACAAACATATTTATTTTTTAAATT
1 GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAGA-AAACAGATTTGTTTTTTAAA--
* * * *
130323 TCTTACTTATTATTTTTTGAA-ATATT-ATTAAATTAGTATTATTTTAATCCGAATAAGCTTGAA
63 TC-T-CTTGTTA-ATTTTCAAGATATTGA-TAGATTAGTATTATTTTAATCCGAATAAGCTTGAA
* * * * **
130386 TGAAAAAAATAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGATA
124 TGAAAAAAACAATTATTTTACGACAAAAAAAAGATCATAACAATTTGAGATA
130438 GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAGAAAACAGATTTAG-TTTTTAAATC
1 GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAGAAAACAGATTT-GTTTTTTAAATC
* * ** *
130502 TCTTGTTAATTTTCAAGATATTGATAGATTAGTATTATTTTATTCTGAATAATTTTGCATGAACA
65 TCTTGTTAATTTTCAAGATATTGATAGATTAGTATTATTTTAATCCGAATAAGCTTGAATGAA-A
* *
130567 ATAACAATTATTTTACGACAAAACAAAAGGTCATAACAATTTGAAGA-A
129 AAAACAATTATTTTACGACAAAA-AAAAGATCATAACAATTTG-AGATA
* * * *
130615 GATAATTGTTCAAATGGAT-ATGACTATTTGAACT-TGTTCA-ATAAACAGATTTGTTTTTTAAA
1 GATAATTATTCAAATAG-TCATAACTATTTAAACTAT-TTCAGA-AAACAGATTTGTTTTTTAAA
* * * * *
130677 TCCCTTATCT-A--TT----A-ATT--T---TTAG-A--ATATT--TCCAAATAAACTT-ATAT-
63 TCTCTTGT-TAATTTTCAAGATATTGATAGATTAGTATTATTTTAATCCGAATAAGCTTGA-ATG
* * *
130722 AAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACAATTTGAAATA
126 AAA-A-AAACAATTATTTTACGACAAAA-AAAAGATCATAACAATTTGAGATA
* * * * * *
130775 AATAATTGTTCAAATTGCCATAACTATTTAAACTATTTCAAAAAATAGATTTAG-TTTTTAAATC
1 GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAGAAAACAGATTT-GTTTTTTAAATC
* * ** ** *
130839 TCTTGTTAATTTTCAAGATATTGATAAATTAGTATTATTTTATTCTAAATAATTTTGCATGAACA
65 TCTTGTTAATTTTCAAGATATTGATAGATTAGTATTATTTTAATCCGAATAAGCTTGAATGAA-A
* *
130904 ATAACAATTATTTTACGACAAAACAAAAGGTCATAACAATTT
129 AAAACAATTATTTTACGACAAAA-AAAAGATCATAACAATTT
130946 AAAGAAGATA
Statistics
Matches: 818, Mismatches: 134, Indels: 190
0.72 0.12 0.17
Matches are distributed among these distances:
158 1 0.00
159 6 0.01
160 106 0.13
161 3 0.00
162 6 0.01
164 1 0.00
165 4 0.00
166 1 0.00
167 3 0.00
168 1 0.00
169 1 0.00
170 3 0.00
171 1 0.00
172 4 0.00
173 1 0.00
174 7 0.01
175 79 0.10
176 110 0.13
177 147 0.18
178 66 0.08
179 36 0.04
180 64 0.08
181 25 0.03
182 10 0.01
183 83 0.10
184 8 0.01
185 10 0.01
186 31 0.04
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (175 bp):
GATAATTATTCAAATAGTCATAACTATTTAAACTATTTCAGAAAACAGATTTGTTTTTTAAATCT
CTTGTTAATTTTCAAGATATTGATAGATTAGTATTATTTTAATCCGAATAAGCTTGAATGAAAAA
AACAATTATTTTACGACAAAAAAAAGATCATAACAATTTGAGATA
Found at i:132018 original size:177 final size:176
Alignment explanation
Indices: 131561--132050 Score: 423
Period size: 177 Copynumber: 2.8 Consensus size: 176
131551 TCCATTACAC
* * ** * * * *
131561 ATTACTTTTTAGAATATTAATAAATTAGCATTATTTTATTCTAAATAAGAC-TATATCAATAGAA
1 ATTAATTTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAA-ACTTATATGAACA-AA
* * * * ** ** * * * **
131625 ACAATTGTTTTATGACAAAACAAATGGTTATAATGATTTGAAATGAATAATTGTTCAAATTGTTA
64 ACAATTATTTCACGACAAAACAAAAGGCCATAACAATTTGAAATAAATAATAGTTCAAATAGACA
* * * * * *
131690 TAACTAATT-GAACTAGTTTGGTAAACAGATTTATTTTCAAATCTCTT
129 TAACTATTTAAAACTAGATCGATAAACAAATTTATTTTCAAATCTCTT
* *
131737 ATTGATTTTTAAAATATTAATCAATTAATATTATTATATTCTAAACAAACTTATATGAACAAAAC
1 ATTAATTTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAACTTATATGAACAAAAC
* * * ** * **
131802 ATTTGTTTCACGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTA-TTCATATATTCAT
66 AATTATTTCACGACAAAACAAAAGGCCATAACAATTTGAAATAAATAA-TAGTTCAAATAGACAT
*
131866 AACTATTTAAAACTAGATCGATAAACAAATTTAGTTTTTAAATAC-CTT
130 AACTATTTAAAACTAGATCGATAAACAAATTTA-TTTTCAAAT-CTCTT
* * * * * * * ** *
131914 ATTAATTTTTGAAATGTTAATAAATTAGTATTATT-TTTTTTGAATAATTTTGTATGAACAAAAA
1 ATTAATTTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAACTTATATGAAC-AAAA
* * * *
131978 CAATTATTTTACTACAAAACAAAATGCCATAACAATTTGAAATAGATAATAGTTCAAATAGACAT
65 CAATTATTTCACGACAAAACAAAAGGCCATAACAATTTGAAATAAATAATAGTTCAAATAGACAT
132043 AACTATTT
130 AACTATTT
132051 GAACTTGTTT
Statistics
Matches: 255, Mismatches: 52, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
175 64 0.25
176 87 0.34
177 103 0.40
178 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (176 bp):
ATTAATTTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAACTTATATGAACAAAAC
AATTATTTCACGACAAAACAAAAGGCCATAACAATTTGAAATAAATAATAGTTCAAATAGACATA
ACTATTTAAAACTAGATCGATAAACAAATTTATTTTCAAATCTCTT
Found at i:132286 original size:340 final size:338
Alignment explanation
Indices: 131743--132399 Score: 738
Period size: 340 Copynumber: 1.9 Consensus size: 338
131733 TCTTATTGAT
* * * *
131743 TTTTAAAATATTAATCAATTAATATTATTATATTCTAAACAAACTTATATGAACAAAACATTTGT
1 TTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAACAAAACAATTAT
* ** * *
131808 TTCACGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCATATATTCATAACTATT
66 TTCACGACAAAACAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATT
*
131873 TAAAACTAGATCGATAAACAAATTTAGTTTTTAAATACCTTATTAATTTTTGAAATGTTAATAAA
131 TAAAACTAGATCGATAAACAAATTTAGTTTTTAAATACCTTATTAATTTTTGAAA-GTAAATAAA
*** ** * *
131938 TTAGTATTATTTT-TTTTGAATAATTTTGTATGAACAAAAACAATTATTTTACT-ACAAAACAAA
195 TTAGTATTATTTTATTCCAAATAAGATTGCATGAACAAAAACAATTAGTTTA-TGACAAAAC-AA
* * *
132001 ATGCCATAACAATTTGAAATAGATAA-TAGTTCAAATAGACATAACTATTTGAACTTGTTTAGTA
258 AGGCCATAACAATTTAAAATAGATAATTA-TTCAAATAGACATAACTATTTGAACATGTTTAGTA
132065 AATTTTCAACTCATTAA
322 AATTTTCAACTCATTAA
* * * * * * *
132082 TTTTATAATTTTAATAAATTAGTATTATTTTATTCTAAATAAAATTGTATGAATAGAAACAATTA
1 TTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAACA-AAACAATTA
* * *
132147 TTTTATGAGC-AAACAAAAGATCATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAACTA
65 TTTCACGA-CAAAACAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTA
* * * * * * *
132211 TTT-GAACTCA-CTTGTTAAACATATTTATTTTTTAAAT-CTTTTACTTATTAATTTTTGGAA-T
129 TTTAAAACT-AGATCGATAAACAAATTTAGTTTTTAAATAC-----CTTATTAATTTTTGAAAGT
* *
132272 AAAT-AATTAGTATTATTTTATTCCAAATAAGATTGCATGAACAGAAACAATTCGTTTATGACAA
188 AAATAAATTAGTATTATTTTATTCCAAATAAGATTGCATGAACAAAAACAATTAGTTTATGACAA
* * ** **
132336 AACAAAGGCTATAACGATTTAAAATATTTAATTATTCAAATAGTTATAACTATTTGAACATGTT
253 AACAAAGGCCATAACAATTTAAAATAGATAATTATTCAAATAGACATAACTATTTGAACATGTT
132400 CAGAAAATAG
Statistics
Matches: 262, Mismatches: 45, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
338 1 0.00
339 72 0.27
340 130 0.50
341 43 0.16
343 16 0.06
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (338 bp):
TTTTAAAATATTAATAAATTAATATTATTATATTCTAAACAAAATTATATGAACAAAACAATTAT
TTCACGACAAAACAAAAGATCATAACAATTTGAAATAAATAATTATTCAAATAGTCATAACTATT
TAAAACTAGATCGATAAACAAATTTAGTTTTTAAATACCTTATTAATTTTTGAAAGTAAATAAAT
TAGTATTATTTTATTCCAAATAAGATTGCATGAACAAAAACAATTAGTTTATGACAAAACAAAGG
CCATAACAATTTAAAATAGATAATTATTCAAATAGACATAACTATTTGAACATGTTTAGTAAATT
TTCAACTCATTAA
Found at i:132457 original size:178 final size:177
Alignment explanation
Indices: 132077--132565 Score: 501
Period size: 178 Copynumber: 2.7 Consensus size: 177
132067 TTTTCAACTC
* * * * *
132077 ATTAATTTTATAATTTTAATAAATTAGTATTATTTTATTCTAAATAAAATTGTATGAATAGAAAC
1 ATTAATTTTAGAATATTAAT-AATTAGTATTATTTTATTCAAAATAAGATTGCATGAATAGAAAC
* *
132142 AATTATTTTATGAGC-AAACAAAAGATCATAACAATTTGAAATAAATAATTGTTCAAATAGTCAT
65 AATTATTTTATGA-CAAAACAAAAGATCATAACAATTTAAAATAAATAATTATTCAAATAGTCAT
* *
132206 AACTATTTGAACTCACTTGTTAAACATATTTATTTTTTAAATCTTTTACTT
129 AACTATTTGAAC-CAC-TGTTAAAAATATTTATTTTTAAAATCTTTTACTT
* * *
132257 ATTAATTTTTGGAATA--AATAATTAGTATTATTTTATTCCAAATAAGATTGCATGAACAGAAAC
1 ATTAA-TTTTAGAATATTAATAATTAGTATTATTTTATTCAAAATAAGATTGCATGAATAGAAAC
** * * * ** *
132320 AATTCGTTTATGACAAAACAAAGGCT-ATAACGATTTAAAATATTTAATTATTCAAATAGTTATA
65 AATTATTTTATGACAAAACAAAAGATCATAACAATTTAAAATAAATAATTATTCAAATAGTCATA
132384 ACTATTTGAA-CA-TGTTCAGAAAATAGATTTATTTTTAAAAT-TTTTACTT
130 ACTATTTGAACCACTGTT-A-AAAAT--ATTTATTTTTAAAATCTTTTACTT
* * * *
132433 TTTAATTTCTAGAATATTAATAATTTTA-TATTATCTTATTCAAAATAAGTTTGCATGATTAG-A
1 ATTAATTT-TAGAATATTAATAA--TTAGTATTATTTTATTCAAAATAAGATTGCATGAATAGAA
* *** * * * * *
132496 ACTAATTATTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTGTTCAGATAATC
63 AC-AATTATTTTATGACAAAACAAAAGATCATAACAATTTAAAATAAATAATTATTCAAATAGTC
132561 ATAAC
127 ATAAC
132566 AAAATTTTTT
Statistics
Matches: 257, Mismatches: 39, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
173 4 0.02
174 1 0.00
175 9 0.04
176 18 0.07
177 57 0.22
178 68 0.26
179 54 0.21
180 39 0.15
181 7 0.03
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (177 bp):
ATTAATTTTAGAATATTAATAATTAGTATTATTTTATTCAAAATAAGATTGCATGAATAGAAACA
ATTATTTTATGACAAAACAAAAGATCATAACAATTTAAAATAAATAATTATTCAAATAGTCATAA
CTATTTGAACCACTGTTAAAAATATTTATTTTTAAAATCTTTTACTT
Found at i:133047 original size:181 final size:179
Alignment explanation
Indices: 132729--133877 Score: 804
Period size: 181 Copynumber: 6.4 Consensus size: 179
132719 TTGGTTCGGT
* * *
132729 AAATAGAA-TTATTTTCTAAATCTCTTACTTATAAATTTTTGAAATATTAATAAATTAGTTTTAT
1 AAATA-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTAT
* * * *
132793 TCTT-TCCTGAATAAACTTGTATGAGCTGAAATAA-TATTTTTATGACAAAACAAAAGCTCATAA
64 T-TTAT-CTGAATAAACTTGTATGAACTGAAACAATTA-TTTTATGACAAAACAAAAGGTCAAAA
* * * * * * **
132856 CAATTTGAAATAAATCATTATTCATATAGTCTTAACTATTTCAACTTATTTGGC
126 TAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGC
** * * * *
132910 AAATGGATTTATTTTTTAAACCTCTTAGTTATTAATTTTTAGAATTTTACTAAATTAGTATTATT
1 AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATT
* * * * * *
132975 TTAATCTGAATAAGCTTGTATGAACTGAAACAATTATTTTGTGATAGAATAAAAGGTTAAAATAA
65 TT-ATCTGAATAAACTTGTATGAACTGAAACAATTATTTTATGACAAAACAAAAGGTCAAAATAA
* * * *
133040 TTTGAAATAGATAATTGTTCAAATAGTCATATCTATTTGAA-TTGGTTCAGT
129 TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-ATTCAGC
*
133091 AAATAAATTTA-TTTTTAAA--TC-T-CTTATTAATTCTTGAAATATTAATAAATTAGTATTATT
1 AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATT
* * * * * * *
133151 TTATTTCCAATAAATTTGTAT--ATTGAAAAACAAATGTTTTATGACAAAACACAAGGT-AATAA
65 TTATCT-GAATAAACTTGTATGAACTG--AAACAATTATTTTATGACAAAACAAAAGGTCAA-AA
* * * * * * ** * *
133213 TGATTTGAAATAGATAGTTGTTCAAATGGCCATAATTATTCAAACTGATTTAGC
126 TAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGC
** * * *
133267 AAATTGATTTATTTTTTAAGTATCTTACTTATTAATTTTTGAAATATTAATAAAGTAGTATT-TT
1 AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATT
* * * * * * * * *
133331 TTATTTTGGATAAACTTTTACGAACTAAAATAATTATTTTAAGA-AAAA-AAAAGGTCATAGA-G
65 TTA-TCTGAATAAACTTGTATGAACTGAAACAATTATTTTATGACAAAACAAAAGGTCA-AAATA
* * * * *
133393 ATTTTAAATAGATAATTGTTCAAATAGTCATAACGATTTGAACTTATTCCGT
128 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGC
* * * *
133445 AAATAAATTTATCTTTTCAAATCTCTTGCTTATTAATTTTTTGAATGTTAATAAATTAATATTAT
1 AAATAAATTTAT-TTTTTAAATCTCTTACTTATTAA-TTTTTGAATATTAATAAATTAGTATTAT
* * * * * * * * *
133510 TTTATTTCATATAAGCTTGTATAAACTGAAAGAATTATTATATGACCAAATAAAAGATCAAAATG
64 TTTATCTGA-ATAAACTTGTATGAACTGAAACAATTATTTTATGACAAAACAAAAGGTCAAAAT-
* * * ** * * * **
133575 ATTTTATGAAATAGATAATTATTCTAATAATTTTAACCATTTAAACTGATTCAAT
127 A-ATT-TGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGC
* ** *
133630 AAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATT
1 AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTT-TGAATATTAATAAATTAGTATTATT
** * ** * * ** * * **
133695 TTAATCCAAATAAGCTTGTACAAAC-AAAACAATTGTTTTATGTTAAAAGAAAAGGTCATAACGA
65 TT-ATCTGAATAAACTTGTATGAACTGAAACAATTATTTTATGACAAAACAAAAGGTCAAAATAA
* * * * * * *
133759 TTTGAAATAAATAATCATTCATAGAGTCTTAAACTTTTTGAAC-TAGTTCAAC
129 TTTGAAATAGATAATTATTCAAATAGTCAT-AACTATTTGAACTTA-TTCAGC
* * * * * ** ** *
133811 AATTAGATTTAATTTTTAAGTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGTATTATT
1 AAATAAATTTATTTTTTAAATCTCTTACTTATTAA-TTTTTGAATATTAATAAATTAGTATTATT
133876 TT
65 TT
133878 GTTCTAATAA
Statistics
Matches: 760, Mismatches: 171, Indels: 74
0.76 0.17 0.07
Matches are distributed among these distances:
174 3 0.00
175 6 0.01
176 119 0.16
177 9 0.01
178 59 0.08
179 47 0.06
180 102 0.13
181 255 0.34
182 18 0.02
183 30 0.04
184 60 0.08
185 52 0.07
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (179 bp):
AAATAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAATATTAATAAATTAGTATTATTT
TATCTGAATAAACTTGTATGAACTGAAACAATTATTTTATGACAAAACAAAAGGTCAAAATAATT
TGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCAGC
Found at i:134918 original size:181 final size:180
Alignment explanation
Indices: 134434--135048 Score: 635
Period size: 181 Copynumber: 3.4 Consensus size: 180
134424 TCAAATTATT
* * * * * *
134434 ATAACTAATTGAACT-AGTATGGTAAATAGATTTATTTATTAAA--TCT--CTTATTAATTTTTG
1 ATAACTATTTGAACTGA-TTTGATAAACAGATTTATTTTTTAAATCTCTAACTTATTAATTTTTC
* * * * * *
134494 AAATATTAATAAATTAATATTATTTTATTTCAAGCAAACTTATATGAACAAAAACATTTGTTTTA
65 AAATATTAATAAATTAGTATTATTTTATTTGAA-TAAACTTGTATGAAGAAAAACAATTGTTTT-
* *
134559 AT-ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCC
128 ATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCC
* * * * * * * * **
134611 TTAACTATTTGAATTG-GTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTA-TAAAATTTC
1 ATAACTATTTGAACTGATTTGA-TAAACAGATTTATTTTTTAAATCTCTAACTTATTAATTTTTC
* * *
134674 AAATATTACTAGATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAA-AATTGTTTT
65 AAATATTAATAAATTAGTATTATTTTA-TTTGAATAAACTTGTATGAAGA-AAAACAATTGTTTT
* * * * * *
134738 ATGACAAAACAAAAGGTTATAACGATTGGAAATATATAATTCTTGAAATAGTC
128 ATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCC
134791 ATAACTATTTGAACTGATTTGATAAACAGATTTATTTTTTAAATCTCCT-ACTTATTAATTTTTC
1 ATAACTATTTGAACTGATTTGATAAACAGATTTATTTTTTAAATCT-CTAACTTATTAATTTTTC
** *
134855 AAATATTAATAAATTAGTATTATTTTATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTA
65 AAATATTAATAAATTAGTATTATTTTATT-TGAATAAACTTGTATGAAGAAAAACAATTGTTTTA
* * * *
134920 TGACAAAA-AAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCC
129 TGACAAAACAAAAGGTT-ATAATGATTTGAAATAGATAATTATTCAAATAGCC
* * * * *
134972 ATAATTATTTGAACTGATTCGATAAATTA-ATTTATGTTTTAAATCTCTAACTTATCAATTTTT-
1 ATAACTATTTGAACTGATTTGATAAA-CAGATTTATTTTTTAAATCTCTAACTTATTAATTTTTC
135035 ATAATATTAATAAA
65 A-AATATTAATAAA
135049 GTAATACAAA
Statistics
Matches: 361, Mismatches: 59, Indels: 32
0.80 0.13 0.07
Matches are distributed among these distances:
176 1 0.00
177 30 0.08
179 4 0.01
180 149 0.41
181 176 0.49
182 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
ATAACTATTTGAACTGATTTGATAAACAGATTTATTTTTTAAATCTCTAACTTATTAATTTTTCA
AATATTAATAAATTAGTATTATTTTATTTGAATAAACTTGTATGAAGAAAAACAATTGTTTTATG
ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCC
Found at i:135171 original size:132 final size:132
Alignment explanation
Indices: 134922--135175 Score: 321
Period size: 132 Copynumber: 1.9 Consensus size: 132
134912 TTGTTTTATG
* * * * *
134922 ACAAAAAAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACT
1 ACAAAAAAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
** * * * *
134987 GATTCGATAAATTAATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTA
66 GATTCGATAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTAATAAAGTA
135052 AT
131 AT
* * * *
135054 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAAAAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * * *
135119 GGTTC-AGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTA
66 GATTCGA-TAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTA
135176 CTAGATTAGT
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
131 1 0.01
132 101 0.99
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (132 bp):
ACAAAAAAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
GATTCGATAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTAATAAAGTA
AT
Found at i:135234 original size:313 final size:313
Alignment explanation
Indices: 134741--135361 Score: 790
Period size: 313 Copynumber: 2.0 Consensus size: 313
134731 TTGTTTTATG
* * * * *
134741 ACAAAACAAAAGGTTATAACGATTGGAAATATATAATTCTTGAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAGGTCATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * **
134806 GATTTGATAAACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTA
66 GATTAGATAAACAAATTTATTTTTTAAATCTCCTACTTATTAAAATTTCAAATATTAATAAATTA
* *
134871 GTATTATTTTATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAA-AAAAAGT
131 GTATTATTTTATTCTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAAGT
* * * * * * *
134935 TCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAA-T
196 T-ATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACA
134999 TAATTTATGTTTTAAATCT-CTAACTTATCAATTTTT-ATAATATTAATAAAGTAAT
260 T-ATTTATGTTTTAAATCTCCT-ACTTATCAATTTTTCA-AATATTAATAAAGTAAT
* * * * *
135054 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAACAAAAGGTCATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * * * *
135119 GGTTCAG-TAAACAAATTTATTTTTTAAATCT-ATCAGTTA-TAAAATTTCATAATATTACTAGA
66 GATT-AGATAAACAAATTTATTTTTTAAATCTCCT-ACTTATTAAAATTTCA-AATATTAATAAA
* *
135181 TTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAA-AATTGTTTTATGACAAAACAAA
128 TTAGTATTATTTTATTCTGAATAAGCTTGTATGAAGA-AAAACAATTGTTTTATGACAAAACAAA
* * * *
135245 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
192 AAGTTATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATAA
* *
135310 ACATATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAA
257 ACATATTTATGTTTTAAATCTCCTACTTATCAATTTTTCAAATATTAATAAA
135362 TTAGTATTAT
Statistics
Matches: 264, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
312 9 0.03
313 239 0.91
314 16 0.06
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (313 bp):
ACAAAACAAAAGGTCATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
GATTAGATAAACAAATTTATTTTTTAAATCTCCTACTTATTAAAATTTCAAATATTAATAAATTA
GTATTATTTTATTCTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAACAAAAAGT
TATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATAAACAT
ATTTATGTTTTAAATCTCCTACTTATCAATTTTTCAAATATTAATAAAGTAAT
Found at i:135367 original size:181 final size:182
Alignment explanation
Indices: 135054--135542 Score: 598
Period size: 181 Copynumber: 2.7 Consensus size: 182
135044 ATAAAGTAAT
* * * *
135054 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * * * * * ** * *
135119 G-GTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTA-TAAAATTTCATAATATTACTAGAT
66 GATTTGA-TAAACATATTTATTTTTTAAATCTCTAACTTATTAATTTTTCATAATATTAATAAAT
*
135182 TAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAA-AATTGTTTTATG
130 TAGTATTATTTTATTTTGAATAAGCTTGTATGAAGA-AAAACAATTGTTTTATG
* * * * *
135235 ACAAAACAAAAGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
135300 GATTTGATAAACATATTTATTTTTTAAATCTCCT-ACTTATTAATTTTTCA-AATATTAATAAAT
66 GATTTGATAAACATATTTATTTTTTAAATCT-CTAACTTATTAATTTTTCATAATATTAATAAAT
* *
135363 TAGTATTATTTTATTTTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATG
130 TAGTATTATTTTATTTTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATG
* * * * *
135416 ACAAAA-AAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAAC
1 ACAAAACAAAAGGTT-ATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAAC
* * * *
135480 TGATTCGATAAA-TTAATTTATGTTTTAAATCTCTAACTTATCAATTTTT-ATAATATTAATAAA
65 TGATTTGATAAACAT-ATTTATTTTTTAAATCTCTAACTTATTAATTTTTCATAATATTAATAAA
135543 GTAATACAAA
Statistics
Matches: 266, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
180 15 0.06
181 239 0.90
182 12 0.05
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (182 bp):
ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
GATTTGATAAACATATTTATTTTTTAAATCTCTAACTTATTAATTTTTCATAATATTAATAAATT
AGTATTATTTTATTTTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATG
Found at i:135483 original size:494 final size:494
Alignment explanation
Indices: 134557--136042 Score: 2929
Period size: 494 Copynumber: 3.0 Consensus size: 494
134547 ACATTTGTTT
134557 TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
1 TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
134622 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCA-AATATTACTAG
66 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
134686 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
131 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
*
134751 AGGTTATAACGATTGGAAATATATAATTCTTGAAATAGTCATAACTATTTGAACTGATTTGATAA
196 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
134816 ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
261 ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
134881 ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
326 ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
134946 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
391 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
135011 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
456 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
135050 TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
1 TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
135115 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
66 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
135180 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
131 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
135245 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
196 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
*
135310 ACATATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
261 ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
*
135375 ATTTTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
326 ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
135440 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
391 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
135505 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
456 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
*
135544 TAATACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
1 TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
135609 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
66 AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
135674 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
131 ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
135739 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
196 AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
135804 ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
261 ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
135869 ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
326 ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
135934 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
391 TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
135999 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
456 TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
136038 TAATA
1 TAATA
136043 TTATTTTATT
Statistics
Matches: 986, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
493 118 0.12
494 868 0.88
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (494 bp):
TAATACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTG
AATTGGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAG
ATTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAA
AGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAA
ACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTT
ATTCTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTTCATAATGATT
TGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTAATTTATGTTT
TAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
Found at i:135665 original size:132 final size:132
Alignment explanation
Indices: 135416--135669 Score: 314
Period size: 132 Copynumber: 1.9 Consensus size: 132
135406 TTGTTTTATG
* * * *
135416 ACAAAAAAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACT
1 ACAAAAAAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
** * * * *
135481 GATTCGATAAATTAATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTA
66 GATTCGATAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTAATAAAGTA
135546 AT
131 AT
* * * *
135548 ACAAAACAAAAGGTT-ATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAAT
1 ACAAAA-AAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAAC
* * * *
135612 TGGTTC-AGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTA
65 TGATTCGA-TAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTA
135670 CTAGATTAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
131 1 0.01
132 94 0.92
133 7 0.07
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (132 bp):
ACAAAAAAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
GATTCGATAAACAAATTTATGTTTTAAATCTATAACTTATAAAATTTCATAATATTAATAAAGTA
AT
Found at i:135821 original size:313 final size:313
Alignment explanation
Indices: 135235--135855 Score: 817
Period size: 313 Copynumber: 2.0 Consensus size: 313
135225 TTGTTTTATG
* * *
135235 ACAAAACAAAAGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAGGTTATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * **
135300 GATTTGATAAACATATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTA
66 GATTAGATAAACAAATTTATTTTTTAAATCTCCTACTTATTAAAATTTCAAATATTAATAAATTA
* *
135365 GTATTATTTTATTTTGAATAGGCTTGTATGATGAAAAACAATTGTTTTATGACAAAAAAAAAGTT
131 GTATTATTTTATTTTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAAAAAAAGTT
* * * * * * *
135430 CATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAATTA
196 CATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATAAATCA
135495 ATTTATGTTTTAAATCT-CTAACTTATCAATTTTT-ATAATATTAATAAAGTAAT
261 ATTTATGTTTTAAATCTCCT-ACTTATCAATTTTTCA-AATATTAATAAAGTAAT
* * * * *
135548 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAACAAAAGGTTATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
* * * * *
135613 GGTTCAG-TAAACAAATTTATTTTTTAAATCT-ATCAGTTA-TAAAATTTCATAATATTACTAGA
66 GATT-AGATAAACAAATTTATTTTTTAAATCTCCT-ACTTATTAAAATTTCA-AATATTAATAAA
*
135675 TTAGTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAA-AATTGTTTTATGACAAAACAAA
128 TTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGA-AAAACAATTGTTTTATGACAAAA-AAA
* * * *
135739 AGGTT-ATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATA
191 AAGTTCATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATA
* *
135803 AA-CAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAA
256 AATCA-ATTTATGTTTTAAATCTCCTACTTATCAATTTTTCAAATATTAATAAA
135856 TTAGTATTAT
Statistics
Matches: 267, Mismatches: 33, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
312 10 0.04
313 242 0.91
314 15 0.06
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (313 bp):
ACAAAACAAAAGGTTATAACGATTGGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACT
GATTAGATAAACAAATTTATTTTTTAAATCTCCTACTTATTAAAATTTCAAATATTAATAAATTA
GTATTATTTTATTTTGAATAAGCTTGTATGAAGAAAAACAATTGTTTTATGACAAAAAAAAAGTT
CATAACGATTGGAAATAGATAATTCTTCAAATAGCCATAACTATTTGAACTGATTCGATAAATCA
ATTTATGTTTTAAATCTCCTACTTATCAATTTTTCAAATATTAATAAAGTAAT
Found at i:135861 original size:181 final size:182
Alignment explanation
Indices: 135548--136375 Score: 760
Period size: 181 Copynumber: 4.6 Consensus size: 182
135538 ATAAAGTAAT
* * * * *
135548 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
* * * * ** * *
135613 G-GTTCAGTAAACAAATTTATTTTTTAAATCT-ATCAGTTA-TAAAATTTCATAATATTACTAGA
66 GATTTGA-TAAAC-AATTTATTTTTTAAATCTCCT-ACTTATTAATTTTTCATAATATTAATAAA
*
135675 TTAGTATTATTTTATTTTGAATAATCTTGTATGAAGAT-AAAAAATTGTTTTATG
128 TTAGTATTATTTTATTTTGAATAAGCTTGTATGAAGATGAAAAAATTGTTTTATG
* * *
135729 ACAAAACAAAAGGTTATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACT
1 ACAAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
135794 GATTTGATAAACAGATTTATTTTTTAAATCTCCTACTTATTAATTTTTCA-AATATTAATAAATT
66 GATTTGATAAACA-ATTTATTTTTTAAATCTCCTACTTATTAATTTTTCATAATATTAATAAATT
* * *
135858 AGTATTATTTTATTCTGAATAGGCTTGTATGATGA--AAAACAATTGTTTTATG
130 AGTATTATTTTATTTTGAATAAGCTTGTATGAAGATGAAAA-AATTGTTTTATG
* * * * * * *
135910 ACAAAA-AAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAAC
1 ACAAAACAAAAGGTT-ATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
* * * *
135974 TGATTCGATAAATTAATTTATGTTTTAAATCT-CTAACTTATCAATTTTT-ATAATATTAATAAA
65 TGATTTGATAAA-CAATTTATTTTTTAAATCTCCT-ACTTATTAATTTTTCATAATATTAATAAA
* * * * * *
136037 GTAATATTATTTTATTTT-AGATAAGCATT-TATGAA-TTGCAACAATTGTTTTATA
128 TTAGTATTATTTTATTTTGA-ATAAGC-TTGTATGAAGATGAAAAAATTGTTTTATG
* * * * * * * * *
136091 ATAAAATATAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCAAAAATAGTTGAACT
1 ACAAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
* * * * * * * * *
136156 TATTCGATAAATAAATT-TTTTCT-AATTTCTTACTTAATAA-TTTTC-TAAATGTTAATAAATT
66 GATTTGATAAACAATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAT-AATATTAATAAATT
** * * ** *
136217 AGTATTATTTTATTTCAAATAAGCATGTAT-AAGTTGAAGCAATTATTTTATG
130 AGTATTATTTTATTTTGAATAAGCTTGTATGAAGATGAAAAAATTGTTTTATG
* * * * * *
136269 ACTAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCTAACAGTCTTAACTATTTGAACT
1 ACAAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
* * *
136334 GA-TTCAGCAAACACATTTATTTTTTAAATC-CTTACTTATTAA
66 GATTTGA-TAAACA-ATTTATTTTTTAAATCTCCTACTTATTAA
136376 GTAGAGTGCA
Statistics
Matches: 530, Mismatches: 93, Indels: 49
0.79 0.14 0.07
Matches are distributed among these distances:
177 10 0.02
178 118 0.22
179 9 0.02
180 37 0.07
181 334 0.63
182 22 0.04
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (182 bp):
ACAAAACAAAAGGTTATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT
GATTTGATAAACAATTTATTTTTTAAATCTCCTACTTATTAATTTTTCATAATATTAATAAATTA
GTATTATTTTATTTTGAATAAGCTTGTATGAAGATGAAAAAATTGTTTTATG
Found at i:136361 original size:359 final size:359
Alignment explanation
Indices: 135548--136372 Score: 900
Period size: 362 Copynumber: 2.3 Consensus size: 359
135538 ATAAAGTAAT
* * *
135548 ACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAATT
1 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTC-TAAAGCCTTAACTATTTGAACT
* * * * * * *
135613 GGTTCAGTAAACAAATTTATTTTTTAAATCTATCAGTTATAAAATTTCATAATATTACTAGATTA
65 GATTCAGTAAAC-AATTTATTTTTTAAATCTCTAACTTATAAAATTTCATAATATTAATAAAGTA
* * *
135678 GTATTATTTTATTTTGAATAATCTTGTATGAAGATAAAAAATTGTTTTATGACAAAACAAAAGGT
129 ATATTATTTTATTTTGAATAAGCTTGTATGAAGATAAAAAATTGTTTTATAACAAAACAAAAGGT
* * * * * *
135743 TATAACGATTGGAAATATATAATTCTTCAAATAGTCATAACTATTTGAACTGATTTGATAAACAG
194 CATAACGATTGGAAATAGATAATTCTTCAAATAGTCAAAAATAGTTGAACTGATTCGATAAACAG
* * *
135808 ATTTATTTTTTAAATCTCCTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTC
259 AATTATTTTCTAAATCTCCTACTTAATAATTTTTCAAATATTAATAAATTAGTATTATTTTATTC
* * * *
135873 TGAATAGGCTTGTATGATGAAAAACAATTGTTTTATG
324 TAAATAAGCATGTATGATG-AAAACAATTATTTTATG
* * * * *
135910 ACAAAAAAAAAGTTCATAATGATTTGAAATAGATAATTGTT-TAAATGGCCATAATTATTTGAAC
1 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCTAAA--GCCTTAACTATTTGAAC
* * * * *
135974 TGATTC-GATAAATTAATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAG
64 TGATTCAG-TAAA-CAATTTATTTTTTAAATCTCTAACTTATAAAATTTCATAATATTAATAAAG
* * * * * *
136038 TAATATTATTTTATTTT-AGATAAGCATT-TATGAA-TTGCAACAATTGTTTTATAATAAAATAT
127 TAATATTATTTTATTTTGA-ATAAGC-TTGTATGAAGAT-AAAAAATTGTTTTATAACAAAACAA
** * *
136100 AAGGTCATAACGATTTTAAATAGATAATTGTTCAAATAGTCAAAAATAGTTGAACTTATTCGATA
189 AAGGTCATAACGATTGGAAATAGATAATTCTTCAAATAGTCAAAAATAGTTGAACTGATTCGATA
* * * *
136165 AATA-AATT-TTTTCT-AATTTCTTACTTAATAA-TTTTCTAAATGTTAATAAATTAGTATTATT
254 AACAGAATTATTTTCTAAATCTCCTACTTAATAATTTTTC-AAATATTAATAAATTAGTATTATT
* *
136226 TTATT-TCAAATAAGCATGTATAAGTTG-AAGCAATTATTTTATG
318 TTATTCT-AAATAAGCATGTAT--GATGAAAACAATTATTTTATG
* * * *
136269 ACTAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCTAACAGTCTTAACTATTTGAACT
1 ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCTAA-AGCCTTAACTATTTGAACT
* *
136334 GATTCAGCAAACACATTTATTTTTTAAATC-CTTACTTAT
65 GATTCAGTAAACA-ATTTATTTTTTAAATCTCTAACTTAT
136373 TAAGTAGAGT
Statistics
Matches: 383, Mismatches: 65, Indels: 34
0.79 0.13 0.07
Matches are distributed among these distances:
358 15 0.04
359 140 0.37
360 12 0.03
361 10 0.03
362 204 0.53
363 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (359 bp):
ACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCTAAAGCCTTAACTATTTGAACTG
ATTCAGTAAACAATTTATTTTTTAAATCTCTAACTTATAAAATTTCATAATATTAATAAAGTAAT
ATTATTTTATTTTGAATAAGCTTGTATGAAGATAAAAAATTGTTTTATAACAAAACAAAAGGTCA
TAACGATTGGAAATAGATAATTCTTCAAATAGTCAAAAATAGTTGAACTGATTCGATAAACAGAA
TTATTTTCTAAATCTCCTACTTAATAATTTTTCAAATATTAATAAATTAGTATTATTTTATTCTA
AATAAGCATGTATGATGAAAACAATTATTTTATG
Found at i:138948 original size:5 final size:5
Alignment explanation
Indices: 138940--139008 Score: 63
Period size: 5 Copynumber: 13.4 Consensus size: 5
138930 TTATTTAAAG
*
138940 AAAAT AAAAT --AAT AAAATT AAAAT GAAAATT AAAAT AAAGA- AAATT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAA-T AAAAT AAA-AT AAAAT
138986 AAAATT AAAAT AAAAT AAAAT AA
1 AAAA-T AAAAT AAAAT AAAAT AA
139009 TTAAACAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
3 3 0.06
5 31 0.57
6 19 0.35
7 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:138963 original size:6 final size:6
Alignment explanation
Indices: 138952--139006 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
138942 AATAAAATAA
* *
138952 TAAAAT TAAAAT GAAAAT TAAAA- T-AAA- GAAAAT TAAAAT TAAAA-
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
138996 TAAAA- TAAAAT
1 TAAAAT TAAAAT
139007 AATTAAACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
4 3 0.07
5 14 0.33
6 25 0.60
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (6 bp):
TAAAAT
Found at i:138989 original size:21 final size:21
Alignment explanation
Indices: 138935--138999 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
138925 AGATTTTATT
138935 TAAAGAAAA-TAAAA-TAATAA
1 TAAAGAAAATTAAAATTAA-AA
** *
138955 -AATTAAAATGAAAATTAAAA
1 TAAAGAAAATTAAAATTAAAA
138975 TAAAGAAAATTAAAATTAAAA
1 TAAAGAAAATTAAAATTAAAA
138996 TAAA
1 TAAA
139000 ATAAAATAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
19 6 0.17
20 6 0.17
21 24 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
TAAAGAAAATTAAAATTAAAA
Found at i:139018 original size:27 final size:24
Alignment explanation
Indices: 138940--139013 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 24
138930 TTATTTAAAG
*
138940 AAAATAAAATAATAAAATTAAAATG
1 AAAATAAAATAA-AAAATTAAAATT
138965 AAAATTAAAATAAAGAAAATTAAAATT
1 AAAA-TAAAAT-AA-AAAATTAAAATT
138992 AAAATAAAATAAAATAATTAAA
1 AAAATAAAATAAAA-AATTAAA
139014 CAATTCTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
24 2 0.05
25 13 0.30
26 12 0.27
27 17 0.39
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (24 bp):
AAAATAAAATAAAAAATTAAAATT
Found at i:139932 original size:4 final size:4
Alignment explanation
Indices: 139925--139988 Score: 53
Period size: 4 Copynumber: 15.5 Consensus size: 4
139915 AAATAGTAAC
*
139925 AATA AATA AAT- AATA AATA AATA AATA AGATA CAAAA AATA AA-A ATATCA
1 AATA AATA AATA AATA AATA AATA AATA A-ATA -AATA AATA AATA A-AT-A
139975 GAATA AA-A AATA AA
1 -AATA AATA AATA AA
139989 ACGGGCCTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
3 8 0.16
4 31 0.62
5 6 0.12
6 4 0.08
7 1 0.02
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:139967 original size:22 final size:21
Alignment explanation
Indices: 139939--139989 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
139929 AATAAATAAT
139939 AAATAAATAA-ATAAGATACAAA
1 AAATAAA-AATATAAGA-ACAAA
* *
139961 AAATAAAAATATCAGAATAAA
1 AAATAAAAATATAAGAACAAA
139982 AAATAAAA
1 AAATAAAA
139990 CGGGCCTACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.18
Consensus pattern (21 bp):
AAATAAAAATATAAGAACAAA
Found at i:141358 original size:16 final size:16
Alignment explanation
Indices: 141337--141413 Score: 53
Period size: 16 Copynumber: 5.1 Consensus size: 16
141327 TAATAATACT
141337 TATATTATAATATTAA
1 TATATTATAATATTAA
*
141353 TATATTATAA-ACTTAT
1 TATATTATAATA-TTAA
141369 TATATT-TAA-ATT-A
1 TATATTATAATATTAA
*
141382 TA-ATTA-AAT-TTAT
1 TATATTATAATATTAA
141395 TAT-TTATATATAATTAA
1 TATATTATA-AT-ATTAA
141412 TA
1 TA
141414 ATTTATATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 17
0.70 0.06 0.25
Matches are distributed among these distances:
12 7 0.15
13 7 0.15
14 3 0.06
15 7 0.15
16 19 0.40
17 5 0.10
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (16 bp):
TATATTATAATATTAA
Found at i:141766 original size:27 final size:26
Alignment explanation
Indices: 141707--141769 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
141697 TTAGTTAGTT
* * *
141707 TAAATAATAATATTATTAATTATTAT
1 TAAATAATAATAATATTAATTATAAA
*
141733 TATAATAGTAATAATATTAATTATAAAA
1 TA-AATAATAATAATATTAATTAT-AAA
141761 TAAATAATA
1 TAAATAATA
141770 GCCAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 2 0.07
27 25 0.83
28 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
TAAATAATAATAATATTAATTATAAA
Found at i:141899 original size:28 final size:30
Alignment explanation
Indices: 141831--141898 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 30
141821 ATAATCATAT
*
141831 TTAATTAATTATAACTTAATTATAAAATAGA
1 TTAATTAATAATAACTTAATTAT-AAATAGA
*
141862 TTAAATAATAATATACTTAATTATTATAATA-A
1 TTAATTAATAATA-ACTTAATTA-TA-AATAGA
141894 TTAAT
1 TTAAT
141899 AAACACTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
31 11 0.35
32 15 0.48
33 5 0.16
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (30 bp):
TTAATTAATAATAACTTAATTATAAATAGA
Found at i:142096 original size:28 final size:28
Alignment explanation
Indices: 142018--142101 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
142008 ATTAATTTTG
* *
142018 AGAT-ATTATTAAATTAGTATTATTTTA
1 AGATAATTATAAAATTAGTATTATTATA
** * *
142045 ATCTAATTATAAAATAATTA-TATTAATA
1 AGATAATTATAAAATTAGTATTATT-ATA
142073 AGATAATT-TAAAATTAGTATTATTCATA
1 AGATAATTATAAAATTAGTATTATT-ATA
142101 A
1 A
142102 TTAATAATAT
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (28 bp):
AGATAATTATAAAATTAGTATTATTATA
Found at i:142351 original size:13 final size:14
Alignment explanation
Indices: 142335--142369 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
142325 TTATTATGAT
142335 TAATTAAATT-TTA
1 TAATTAAATTATTA
*
142348 TAATTTAATTATTA
1 TAATTAAATTATTA
142362 TAATTAAA
1 TAATTAAA
142370 GATAATGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAATTAAATTATTA
Found at i:142775 original size:8 final size:8
Alignment explanation
Indices: 142763--142818 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
142753 ATTTAGTACA
142763 ATATAATT
1 ATATAATT
*
142771 TTAT-ATT
1 ATATAATT
142778 ATATAATT
1 ATATAATT
142786 ATATAA--
1 ATATAATT
*
142792 ATATTATT
1 ATATAATT
142800 ATATAAATT
1 ATAT-AATT
142809 -TATAA-T
1 ATATAATT
142815 ATAT
1 ATAT
142819 TAGAAACTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
6 6 0.15
7 11 0.28
8 19 0.49
9 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
ATATAATT
Found at i:142800 original size:14 final size:14
Alignment explanation
Indices: 142778--142817 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
142768 ATTTTATATT
*
142778 ATATAATTATATAA
1 ATATTATTATATAA
142792 ATATTATTATATAA
1 ATATTATTATATAA
*
142806 AT-TTATAATATA
1 ATATTATTATATA
142818 TTAGAAACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTATTATATAA
Found at i:142802 original size:22 final size:23
Alignment explanation
Indices: 142774--142820 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
142764 TATAATTTTA
142774 TATTATAT-AATTATATAA-ATAT
1 TATTATATAAATT-TATAATATAT
142796 TATTATATAAATTTATAATATAT
1 TATTATATAAATTTATAATATAT
142819 TA
1 TA
142821 GAAACTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TATTATATAAATTTATAATATAT
Found at i:143073 original size:29 final size:30
Alignment explanation
Indices: 143041--143102 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
143031 ATAATACTTA
143041 TAATAATT-TAT-TAATCTCAAATTT-ATAAT
1 TAATAATTATATCTAAT-T-AAATTTAATAAT
*
143070 TAATAATTATATCTAATTTAATTTAATAAT
1 TAATAATTATATCTAATTAAATTTAATAAT
143100 TAA
1 TAA
143103 ATTAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 13 0.45
30 12 0.41
31 4 0.14
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (30 bp):
TAATAATTATATCTAATTAAATTTAATAAT
Found at i:143272 original size:18 final size:19
Alignment explanation
Indices: 143251--143321 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 19
143241 TATTATATAC
143251 TTAATAATTTAA-A-AATTA
1 TTAA-AATTTAATATAATTA
143269 TTAAAA-TTAATATAATTA
1 TTAAAATTTAATATAATTA
* *
143287 TTAAAAATTAGTATAATTA
1 TTAAAATTTAATATAATTA
143306 GTTGAAATATTTAATA
1 -TT-AAA-ATTTAATA
143322 GTTAATTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
16 4 0.09
17 3 0.07
18 15 0.34
19 11 0.25
20 2 0.05
21 3 0.07
22 6 0.14
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
TTAAAATTTAATATAATTA
Found at i:143313 original size:19 final size:19
Alignment explanation
Indices: 143264--143305 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
143254 ATAATTTAAA
143264 AATTATT-AAAATTAATAT
1 AATTATTAAAAATTAATAT
*
143282 AATTATTAAAAATTAGTAT
1 AATTATTAAAAATTAATAT
143301 AATTA
1 AATTA
143306 GTTGAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
AATTATTAAAAATTAATAT
Found at i:143387 original size:12 final size:12
Alignment explanation
Indices: 143370--143395 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
143360 ATAACAAAAT
143370 TATAATTATAAA
1 TATAATTATAAA
143382 TATAATTATAAA
1 TATAATTATAAA
143394 TA
1 TA
143396 ATATATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATAATTATAAA
Found at i:143485 original size:32 final size:31
Alignment explanation
Indices: 143446--143521 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 31
143436 AATTATTATA
* * *
143446 AATAAATTATTTAATTTAATAAATGATTAGAT
1 AATAAATTATTAAAATTAATAAAT-AATAGAT
*
143478 AATAAATT-TATAAAATTAATAAATAATATAT
1 AATAAATTAT-TAAAATTAATAAATAATAGAT
143509 AAT-AATTATTAAA
1 AATAAATTATTAAA
143522 TATATTATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
30 8 0.21
31 10 0.26
32 20 0.53
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (31 bp):
AATAAATTATTAAAATTAATAAATAATAGAT
Found at i:143502 original size:21 final size:22
Alignment explanation
Indices: 143478--143523 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
143468 ATGATTAGAT
*
143478 AATAAATTTATAA-AATTAATA
1 AATAAATATATAATAATTAATA
*
143499 AAT-AATATATAATAATTATTA
1 AATAAATATATAATAATTAATA
143520 AATA
1 AATA
143524 TATTATAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AATAAATATATAATAATTAATA
Done.