Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168260.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25110
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Found at i:148 original size:26 final size:26
Alignment explanation
Indices: 119--171 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
109 GTTGACTTAG
119 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
145 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
171 G
1 G
172 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:1006 original size:26 final size:26
Alignment explanation
Indices: 976--1028 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
966 GTTGACTTAG
*
976 GCATAC-AGAGTTCATTCTCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
1002 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1028 G
1 G
1029 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1921 original size:25 final size:26
Alignment explanation
Indices: 1887--1938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1877 GTTGACTTAG
* *
1887 GCATACGGAG-TCATTCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
1912 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
1938 G
1 G
1939 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:3810 original size:872 final size:877
Alignment explanation
Indices: 1--6191 Score: 6871
Period size: 872 Copynumber: 7.0 Consensus size: 877
* * * * * *
1 GAGGGTTACAGCAGCAGGATCGACAGCACGCAGAGGAGGACCCGATCGATCCCCAGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGCGCA-
* * * * *
66 TCCACCCCTCTGGCCGGCTGAGTGCCCACACGCT--TGTTCGGGGGTTGACTTAGGCATACGGAG
64 TCC-CGCCTCTGGCCGGCTGAGCGCCC-TACGCTCAT-TTCGTGGGTTGACTTA-GCA-A-TG-G
* * * * *
129 TTCATTACCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCGGACCAGACAGAGGGTTGC
122 -T--TT-CC-CTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* *
194 GGAAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA-TC--
182 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG--GCATTTTTCTTCATCGGGGCACCACTCGG
* * * * *
256 -G---C-CGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGTTCGGGGGGGCCGAGGGGGGTGT
245 AGCATCACCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGT
*
316 GCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAA
307 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
381 CCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
372 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
446 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
437 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
* * *
511 GCTGGATGTTTTTT-TGCATGCCAACAAAAATACAAGGATCAAGTCTTCCAAGTTTGGGGCCAAA
502 GCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** * * **
575 ACTTTTTTCGAAAAAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGAAAAAAATA
566 ACTCCTTCCAAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* * * * *
640 GAACACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAGGGGACCATTGTATTAATTTACA
630 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* **
705 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAATCACCTACCACCCTAT
695 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
770 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGT----GCCCG-CCCGCTCGTTTCG
760 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCG
* * *
830 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATCAGACCAGATC
825 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * ** *
883 GAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAGGGTTACCCGACCCAT---C-C-T-CG----
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGCTTGCGCATC
* * *
938 --G---CTGAG-C-G-T-A-CG--C-ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
66 CCGCCTCTG-GCCGGCTGAGCGCCCTACGCTCATTTCGTGGGTTGACTTA-GCA-A-TG-G-T--
* * * * * **
990 TTCTCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGCAACA
123 TTC-C-CTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * * * *
1055 GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACGATCGCCGGAG
186 GCACATGCTGGGCTCGGGCATGTGCTGGTG--GCATTTTTCTTCATCGGGGCACCA-C-TCGGAG
* * * * *
1120 CATCACCGGAGAACCTGACAGGCGGTATTGGGGTTCCGGCAATCGGGGGGCCGGGGGGGTGTGCG
247 CATCACC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCG
1185 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
310 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
1250 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAA
375 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
1315 GTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCAAGTTTTTAGCT
440 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
* * * *
1380 GAATTTTTTTGTGCTTATG--AACAAAATTGCAAGGATCACGTCTACCAACTTTGGGTCCAAAAC
505 GAATTTTTTTGTGC--ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
1443 TCCTTCTAAAAGAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
568 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
1508 AACCGAAGTCGTCTTTCCATGAAACTTCACGAGTGAAAGGCATAAGGGACCATTGTAATGAATTT
633 AA-CG-AGTCGTCTTGCCATGAAACTTCAC--GTG-AAGGCTTAAGGGACCATTGT-ATGAATTT
1573 ACAAGGCCCATAAAAATGGGCATTGGCATGACAGAAATATGAAGATGTGCCTAAA-CCACCTA-C
692 ACAA-G-CCATAAAAAT-GGCATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
1636 ACCCTAGTCGATCCCACGGCATTG-GCCAACCCGTCTCTCTGGGCCGACGTAAGTGCCCGCACCG
753 ACCCTA-TCGAT-CCACGGC-TTGCG-CATCCCGTCTCTCT-GGCCGACGT-AGTGCCCGC-CCG
*
1700 -CCCGCACCGCCTTTCGTCGGTTGGCTTAGGC---CGGAGTTCATTCCCAGTCTAAAGATCAGAC
811 CCCCGC-TCG--TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGAC
*
1761 CAGACC
872 CGGACC
* * ** *
1767 GAGGGTTACGGCAGCAGGA-TGGCA-CA-G-AG-GGTGG-CCACGGTCGATCCCCGACTTACGCA
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACC-CGACCGATCCCCG-CTTGCGCA
* *
1826 TCCCGCCCCTCTGGGCCTGTGCTGAGCGCCCCACACACGCTCATTCCGTGGGTTGACTTAGGCAT
64 TCCCG--CCTCT-GGCC-G-GCTGAGCG--CC-C-TACGCTCATTTCGTGGGTTGACTTA-GCA-
* * *
1891 ACGGAGTCATTCCTAGTCTAAGCATACGGAGTTCAATCCCAGTCTAAGATC-GAACCGGACCGAG
118 A-TG-GT--TTCC--CTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAG
* * *
1955 GGTTGCGGCAGCAAATGCTGGGCTCGAGCATGTGCTGGTATCGCATTTTTCTTCATCGGGGCACC
176 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG--TGGCATTTTTCTTCATCGGGGCACC
*** * * * * *
2020 ATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCTTTGGGGTTTCGCCGATCGGGGGGGCCGA
239 A-C-TCGGAGCATC-ACCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGG
* * **
2085 GGGGTGTGCACACATGATATGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCT
300 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
2150 CATCAATCTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGT
365 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
2215 AGCCATTAAAGTGTCAGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
430 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
* * * *
2280 GTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCACAT-TACCAAGTTAGGG
495 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
2344 GCCAAAACTCCTT-CAAAAAAATTTTAAAAAATCCTGAACGCGCAAAAAGTTTCAAAAATCGTAA
560 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC-CGCAAAAAGTTTCAAAAATCGTGA
2408 AAAATAGAAAACGAGTCGTCTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
624 AAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
**
2473 ATTTACAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
688 ATTTAC-AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
2538 CA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC
752 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-CC
2602 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACC
815 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * *
2665 GAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGATGGGGACCTGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGCGCAT
2730 CCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTT----A--G-----
65 CCCG--CCTCTGGCCGGCTGAGCGCCC-TACGCTCATTTCGTGGGTTGACTTAGCAATGGTTTCC
* * *
2784 ------GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAAAT
127 CTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * *
2843 TCCGAGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGC
192 GCTGGGCTCGGGCATGTGCTGGTG--GCATTTTTCTTCATCGGGGCACCA-C-TCGGAGCATCAC
* *
2908 TGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGCCGGGGGGGTGTGCGCACATG
253 -CGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATG
* * * * * * * *
2973 ATGTGC-AGTGGTTACTGGTACTTGGCCCTTATATTGGGCCTCTATCCTTGATCAAACCCCAAGA
316 ATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * * *
3037 ACT-AGCACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAATGT
380 ACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
3101 CTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
444 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
* * * *
3166 TGTTTTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCATTC
509 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* **
3231 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
574 CAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * **
3296 TCGTCTTGCCATGAAACTTGACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGTGATAAA
639 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
3361 AATGGCATTGGCATGCAGAAATATAAAGATGTGCCT-AACCCACCTACCA-CCTATCGATCCATG
704 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
3424 GCTTGCGCATCCTGTCTCTCTGGCCGACATAGTGCCCGCCCG-CCCGCTCGTTTCCTCGGTTGGC
769 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGC
* **
3488 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGAGT
834 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * *
3532 GAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGCTTGTGCATC
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGCTTGCGCATC
* *
3597 CCGCCTCTGGCCGGCTGAGCGCGCCTACGCT-TTTTCGTGGGTTCA-TT-GCAATGG-TTCCCTC
66 CCGCCTCTGGCCGGCTGAGCGC-CCTACGCTCATTTCGTGGGTTGACTTAGCAATGGTTTCCCTC
* *
3658 TAAGCATACGGAGGTTCATTCCCAGTCTAATGATCCGA-TGGA-CGAGGGTTGCGGCAAGCACAT
130 TAAGCATACGGA-GTTCATTCCCAGTCTAA-GATCAGACCGGACCGAGGGTTGCGGC-AGCACAT
*
3721 GCTGGGCTCGGG-ATGTGCTGGTAGGCATTTTTCTTCATCGGGGCACCA-ACGGAGC-TCACCGA
192 GCTGGGCTCGGGCATGTGCTGGT-GGCATTTTTCTTCATCGGGGCACCACTCGGAGCATCACCGA
*
3783 GAACCTGACCGACTGGCATTAGGGTTCCG-CGATCGGGGGGCCGGGGGGTGTGCGCACATGAATG
256 GAACCTGACCGAC-GGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATG-ATG
* * *
3847 TGCG-T-GGTGGCTGGT--TTGGCACTTATATTGG-CCCCTATCGCTCGTC-AACCTCGA-AACT
319 TGCGATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
3905 CACA-CCCC-TAAAGAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATT-AAGTGTCTG
383 CACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
3967 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
447 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
* * **
4032 TTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGGCCAAAACTCCTTCTG
512 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCA
* * * ** *
4097 AAAAAATTTTAAAAAATCCCGAATCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTC
576 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
4162 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
641 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * **
4227 TGGCATTGGCA--CAAGAAATATGTAGATGTCCCCAAACACACCTACCACCCTATCGATCCACCA
706 TGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
4290 CTTGTGCATCCCGT-TCCTCTGGCCGACGTAGTGCCTGTCCTCCCGCCCGCCCGCTCGTTTCGTT
770 CTTGCGCATCCCGTCT-CTCTGGCCGACGTAGTG-C---CCGCCCG--C-CCCGCTCGTTTCGTC
* *
4354 GGTTGGCTTAGGCATACGGTGTTCATTCCCAGTCTAAGATCAAACCGGACC
827 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
4405 GAGGGTTGCGGTAGCAGGATTGGCAGCACGCAAAGGGGGACCCGACCGATCCTCGACTTACGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG-CTTGCGCAT
* ** * * *
4470 CCTGCCCCTCTGGCCGATTGAACGCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGG
65 CC--CGCCTCTGGCCGGCTGAGCGCC-CTACGCTCATTTCGTGGGTTGACTTA-GC--A--ATGG
** * * * * *
4534 TTATTTCTAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAAATCTGA-C-AATCCAAGGGTTGC
122 ---TTTC-CCTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTGC
* * * **
4597 GGTC-GCACATGCTAGGCTCAGGCATGCT-CTGGTGCCATATTTTTCTTCGCCGGGGCACCATCG
182 GG-CAGCACATGCTGGGCTCGGGCATG-TGCTGGTGGC--ATTTTTCTTCATCGGGGCACCA-C-
* * * * * * * ** *
4660 TCGGAGGATCGCCAACTAACCTGACTGGCAGCATTGGTTTTCCGACGATCGGGGGGGCCAGGGGG
241 TCGGAGCATCACCGA-GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* *
4725 TGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATC
304 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
4790 AAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCC
369 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
4855 ATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGCTCACAAAATCTTGTACAC-T----TTT
434 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * *
4915 TT-CCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCATGTTTGGGGCCA
499 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
4979 AAACTCCATT-CGAAAAAATTTTAAAGAATCCCGAAGCACAAAAAGTTTCAAAAATTGTGAAAAA
564 AAACTCC-TTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
5043 TAGAAAACGAGTCGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGTATCATTGTATGAATTTA
628 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
5108 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
693 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
5173 ATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCTGCCGTAATGCCCACCCGCCCGCCCACCCG
758 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGCCCG--C-CCCG
* * * * *
5238 CTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCAGATC
816 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * *
5300 GAGGGTTGCGGTAGCAAGATCGGCAGCACGCATAGGGGGACCCGACCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGCGCAT
* * * * *
5365 CCCACCCCTCTGGCCGACTGAGCAGCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATTCGGAGT
65 -CC-CGCCTCTGGCCGGCTGAGC-GCCCTACGCTCATTTCGTGGGTTGACTTA-GCAAT--G-G-
* * ** * *
5430 TCATTCCCAATCTAAACAAACGGAGTTCATTCCCAGTCTTGGATCAGACCAGACTGAGGGTTGCG
122 T--TTCCC--TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * ** *
5495 GCAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTT-TTC-T-------TCAC-CGGAG-
183 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCATTTTTCTTCATCGGGGCACCACTCGGAGC
* * * *
5549 A--ACC----A--T-ACCGACAGCATTGGGGTTCCGACGATAGAAGGGGTCGGGGGGGTGTGCGC
248 ATCACCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG--GGGGGCCGGGGGGTGTGCGC
*
5605 ACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
311 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
5670 GAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAG
376 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
5735 TG-CTTGAAATGGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCT
441 TGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
* * * **
5799 GAATTTTTTTGTGCAGGCCACCAAAAATACAAGGATCATGTCTACCAAGTTTAAGGCCAAAACAT
505 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-T
* **
5864 -CTTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
569 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
5928 ATGAGTCGTCTTGTCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
634 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
5993 ATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
699 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
6058 CCACGGCTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGT
764 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC-C--CCGCTCGTTTCGT
* * **
6123 CGGTTGGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTTC
826 CGGTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
*
6176 GAGGGTTGTGGCAGCA
1 GAGGGTTGCGGCAGCA
6192 CATGCTGGGC
Statistics
Matches: 4594, Mismatches: 484, Indels: 468
0.83 0.09 0.08
Matches are distributed among these distances:
856 6 0.00
857 135 0.03
858 2 0.00
860 2 0.00
861 1 0.00
862 4 0.00
863 143 0.03
864 233 0.05
865 98 0.02
866 329 0.07
867 97 0.02
868 50 0.01
869 11 0.00
870 108 0.02
871 95 0.02
872 445 0.10
873 383 0.08
874 58 0.01
875 66 0.01
876 124 0.03
877 42 0.01
878 47 0.01
879 284 0.06
880 5 0.00
881 2 0.00
882 47 0.01
883 38 0.01
884 33 0.01
885 3 0.00
886 47 0.01
887 40 0.01
888 35 0.01
891 6 0.00
892 17 0.00
893 23 0.01
894 183 0.04
895 271 0.06
896 91 0.02
897 108 0.02
898 47 0.01
899 38 0.01
900 81 0.02
901 87 0.02
902 28 0.01
903 45 0.01
904 16 0.00
905 21 0.00
906 3 0.00
907 7 0.00
908 43 0.01
909 57 0.01
910 369 0.08
911 39 0.01
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGCTTGCGCATC
CCGCCTCTGGCCGGCTGAGCGCCCTACGCTCATTTCGTGGGTTGACTTAGCAATGGTTTCCCTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGGCATTTTTCTTCATCGGGGCACCACTCGGAGCATCACCGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCGGACC
Found at i:4571 original size:26 final size:26
Alignment explanation
Indices: 4520--4573 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
4510 TGGGTTGACT
* *
4520 TAGGCATACGAAGGTTATTTCTAGTC
1 TAGGCATACGAAGGTTATTCCCAGTC
*
4546 TAGGCATACGGA-GTTCATTCCCAGTC
1 TAGGCATACGAAGGTT-ATTCCCAGTC
4572 TA
1 TA
4574 AAATCTGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
TAGGCATACGAAGGTTATTCCCAGTC
Found at i:6788 original size:716 final size:711
Alignment explanation
Indices: 5544--7608 Score: 3088
Period size: 716 Copynumber: 2.9 Consensus size: 711
5534 TTTTCTTCAC
* * *
5544 CGGAGAACC-ATACCGACAGCATTGGGGTTCCGACGATA--GAAGGGGTCGGGGGGGTGTGCGCA
1 CGGAGAACCTA-ACCGACGGCATTGGGGTTCCGAC-ATATCG-GGGGGGC-GGGGGGTGTGCGCA
*
5606 CATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
62 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
5671 AGAACTTACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGT
127 AGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
5736 G-CTTGAAATGGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTG
191 GTC-TGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG
* * * * **
5800 AATTTTTTTGTGCAGGCCACCAAAAATACAAGGATCATGTCTACCAAGTTTAAGGCCAAAACATC
254 AATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC-TC
* *
5865 TTCCGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
318 TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAAT
* * *
5930 GAGTCGTCTTGTCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
383 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
5995 AAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
448 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
6060 ACGGCTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGTCG
513 ACGGCTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGTCG
* *
6125 GTTGGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTTCGAGGGTTGTGGCAG
578 GTTGG-CATAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTTCGAGGGTTGCGGCAG
* * *
6190 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACTGGGGCACTATCACCGGAGC
642 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGAAGC
6255 ATCA-
707 ATCAT
* * *
6259 CTGGAGAACCTAACCGGCGGCGTTGGGGTTCCGATA-ATCGGGGGGGCCAGGGGGGTGTGCGCAC
1 C-GGAGAACCTAACCGACGGCATTGGGGTTCCGACATATCGGGGGGG-C-GGGGGGTGTGCGCAC
*
6323 ATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGA
63 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
6388 GAACTCAAACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTG
128 GAACTCAAACCCCCTTAAAGAGCATTTGAGATT-TACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
6453 TCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAAGTTCTTAGCTGAA
192 TCTGAAATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
* * * * *
6518 TTTTTTTGTGCATGCCAACAAAAATAGAAGGATGAAATCTACCCAGTTTGGGGCCACAACTCCTT
256 TTTTTTTGTGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACT-CTT
* * * *
6583 CCGAAAAAATTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATG
320 CCGAAAAAATTTT-AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATG
*
6648 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATA
384 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
6713 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCA
449 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
6777 CGGCTTACGCATCCCGTCTCTCTGGCC-ACCGTAGTGCCCGCCCGCCCGTCCGCTTGTTTTGTCG
514 CGGCTTACGCATCCTGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGTCG
* * * * * *
6841 GTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGATCGAGTGTTGCAGCAGT
578 GTTGGCATAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTTCGAGGGTTGCGGCAGC
* **
6906 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCA
643 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGAAGCA
6971 TCAT
708 TCAT
* * *
6975 CGGAGAACCTGACCGACGGCATTGGGGTTCTGACATATCGGGGGGGCTGGGGG-GTGCGCACATG
1 CGGAGAACCTAACCGACGGCATTGGGGTTCCGACATATCGGGGGGGCGGGGGGTGTGCGCACATG
* *
7039 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
7104 CTCAAA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCT
131 CTCAAACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* **
7168 GAAATGGGGAAACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATG-TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
* *
7233 TTTTGTGCATGCCAACAAAAATAAAAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTTCTTCC
259 TTTTGTGCATGCCAACAAAAAT-AAAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC-TCTTCC
* *
7298 GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAACAGAAAACGAGT
322 GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGT
*
7363 CGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
387 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
7428 ATGGCATTGGCACGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
452 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
7493 CTTGCGCATCCTGCCTCTTTGGCCGGCGTAGTGCCCG-CC-CAC-T---C--ATTTCGTCGGTTG
517 CTTACGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGTCGGTTG
* * * * *
7550 GCGTAGCCAGACGAAGTTCATTCCCAATCTAAGATCGAACCGGATT-GAGGGTTGCGGCA
582 GCATAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGG-TTCGAGGGTTGCGGCA
7609 ATAAGATCGA
Statistics
Matches: 1229, Mismatches: 102, Indels: 48
0.89 0.07 0.03
Matches are distributed among these distances:
705 58 0.05
706 1 0.00
707 1 0.00
710 1 0.00
711 3 0.00
712 284 0.23
713 181 0.15
714 7 0.01
715 152 0.12
716 392 0.32
717 149 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (711 bp):
CGGAGAACCTAACCGACGGCATTGGGGTTCCGACATATCGGGGGGGCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCAAACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATAAAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCTTCCGAAA
AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
CGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGTCCGCTTGTTTTGTCGGTTGGCAT
AGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGTTCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGAAGCATCAT
Found at i:12074 original size:26 final size:26
Alignment explanation
Indices: 12045--12097 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12035 GTTGACTTAG
*
12045 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
12097 G
1 G
12098 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:13864 original size:26 final size:26
Alignment explanation
Indices: 13835--13887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13825 GTTGACTTAG
* *
13835 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
13861 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
13887 G
1 G
13888 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:14529 original size:4 final size:4
Alignment explanation
Indices: 14520--14549 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14510 CCGACATAGT
14520 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
14550 TCGTTTCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:16546 original size:26 final size:26
Alignment explanation
Indices: 16517--16569 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507 GTTGACTTAG
16517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16543 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16569 G
1 G
16570 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:18294 original size:26 final size:26
Alignment explanation
Indices: 18255--18307 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18245 GTTGACTTAG
18255 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
18281 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
18307 G
1 G
18308 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20063 original size:26 final size:26
Alignment explanation
Indices: 20034--20086 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20024 GTTGACTTAG
20034 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
20060 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
20086 G
1 G
20087 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21473 original size:889 final size:883
Alignment explanation
Indices: 17567--25110 Score: 8530
Period size: 889 Copynumber: 8.5 Consensus size: 883
17557 CGGGGGGTGC
* *
17567 GCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17632 TCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
17697 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
* *
17762 TGAATTTTTTTGTGCATGCCAACAAAATTACAACGATCACGTCTACCAAGTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * ** *
17827 CCTTTCGAAAAAATTTTAAAAACTCCCGAACCGA-AAAAAGTTTCAAAAATCATGAAAAATAAAA
261 CCTTCCGAAAAAATTTTAAAAAATCCTGAACC-ACAAAAAGTTTTGAAAATCATGAAAAATAGAA
17891 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
325 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17956 CATAAAAATGGCATTGGCATGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGA
390 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
18021 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGC-CC-GCCCGCTCG-T-TCT-
455 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCCTGCCCGCCCGTTGTTTC
* * * * * * * * **
18081 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGCCTAAGATAGGACCGGACTGCGGGTTGTGG
520 GTCGGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGG
* * * * * *
18146 CAACAGGATCGGCAGCACGTAAAGGGGGACCCAGCCCGATCCCTGGCTTGCGCATCCCGCCCCTC
584 TAGCAGGATCGGCAGCACGTAGAGGGGGACCC-GACCGATCCCCGACTTGCGCAT-CCGCCCCTC
* * *
18211 TGGCC-AGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
647 TGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* **
18275 GTCTAAGCATACA-GATTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA
711 GTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACA
* * * * ** * *
18339 TACTGGGCTCAGGCATGTGCTGGAGCCACATTTTTCTTCG-CTTGGGCACCATCACTGGAGCATC
775 TGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTC-GGGGCACCAT--C----G---C
** ** * * *
18403 GTCGGAGAACCTGACCGGTAGCATT-GGCGTTCCGGTGATCGGGGGGTCGGGGGGTTTGC
830 --CGGAGAACCTGACCGGCGGCATTAGG-GTTCCGACGATCGGGGGG-C--CGGGTGTGT
*
18462 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
18527 TCTAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
18591 AGTGTCTGAAATGGGGACACTTTATTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAG
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAAG
* *
18655 CTGAAGTTTTTTGTGCATG-CAACAAAAATACAAGGATCACTACGTCTACCAAGTTTGCGG-CAA
195 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT--C-ACGTCTACCAAGTTTGGGGCCAA
* * *
18718 AACTCCTTCCGAAAAAAAATTTT-AAAAATCCTGATCCGCAAAAAGTTTTGAAAATCGTG-AAAA
257 AACTCCTTCCG--AAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAA
* * *
18781 TAGAAAACTGAGTCGTCTTGCAATAGAAATTTACACTGTGAAGAGCTTAA-GGA-CATTGCATGA
320 TAGAAAAC-GAGTCGTCTTGCCAT-GAAACTT-CAC-GTGAAG-GCTTAAGGGACCATTGTATGA
**
18844 ATTTAC-AG-CAT--AAATGGCATTGGCACACAGAAATATGAAGATGTG-CTAAACGCCACCTAC
380 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC-CCACCTAC
* * * **
18904 CACCCTAATGCGATCCACGGCTTG-GCATCCTGTTTCTCTTCTGGCCGACGT-GTGTCTGCTACT
444 CACCCT-AT-CGATCCACGGCTTGCGCATCCTG--TCTC-TCTGGCCGGCGTAGTGCCCGCGCCT
* * * * * *
18967 GCCCGCAATCGCCTCGTCTCATCGGTGGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTG
504 GCCCGC---C-CGTTGTTTCGTCGGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
19032 GACTGAAACTCGAAGGGTTTACAGTAGCATAGATTGGCAGCACGTAGAGGGCGGACCCGA-CG-T
564 AACAG-GAC-CG-AGGG-TTACGGTAGCA-GGATCGGCAGCACGTAGAGGG-GGACCCGACCGAT
* * * * * * *
19095 CCCTGGCTTGCGCATCCTGCCCCTCTGGCCTG-CTGAGCACCTGCACACTCGTTTTGTGGGTTGA
623 CCCCGACTTGCGCATCC-GCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGA
19159 CTTAGGCATACGGAGTTCATTCCCAG--T---C-T-A--AG---------A-TC-AA-A-T----
686 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * ** *
19198 CAGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGTCACATTTTTC-TC-A
751 CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGT
* * * * * * *
19261 CTGGGGAACCATCGTTGAAGCATCGTCGGAGAACCTGACCGACGGTATTCGGGATCTGGCGATCA
816 C-GGGG---CA-C-------CATCGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-
* *
19326 GGGGGGTCGGGGGTGTT
868 GGGGGGCCGGGTGTG-T
19343 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 -GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
19408 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTA
65 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
19473 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAA
130 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAA
* * * *
19538 -CTGAA-TTTTTTGTGCATGCCAAAAAAAATACAATGATCACATCTACCAAGTTTGTGGCCAAAA
194 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** *
19601 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTGTGACAAATAGA
259 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGA
** * *
19666 AAACGAACCGTCCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
324 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
19731 CCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCG
389 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
19796 ATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CC-GCCCACCTGTTCGTT
454 ATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCCTGCCCGCCCGTT-GTT
*
19859 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTAC
518 TCGTCGGTTGGCTTAGGCATAT-GAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTAC
* * * * * *
19924 GATAGCAGGATCAGCAGCATGTGGAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGCCCTT
582 GGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATC-CGCCCCT
* * * *
19989 TTGGCCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
646 CTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
20054 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGTGGCAGCAGAT
711 GTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACAT
20119 GCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCTG
776 GCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCTG
* *
20184 ATCGGTGGCATTAGGGTTCCGACGATCGGGGGGCCGGTGGGTGTGT
841 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCC---GGGTGTGT
* * * * *
20230 GCACTTGATGTGGGATGGGTGCTGGTACATGGCCCTTATATTGTCCCCCTATCTCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
20295 TTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
20360 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
* * * * * *
20425 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGAATCATGTCTACCAAGTTTCGGGTCAAAACC
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** * *
20490 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGACAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
* * * * *
20555 ATGAGCCGTCCTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
20620 ATAAAAATGGCATTGGGATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGAT
391 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** * *
20685 CCACAACTTGCGCATCCTGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTTATT
456 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG--CGCCTGCCCGCCCG-TTGTT
* * **
20750 TCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGACAGGACAGAGGGTTGT
518 TCGTCGGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTAC
* * *
20815 GGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATGCCGCCCCT
582 GGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCAT-CCGCCCCT
* ** *
20880 CTGGCC-AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTACC
646 CTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
20944 AGTCTAAGCATAAGGAGTTCATTTCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCACA
710 AGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACA
*
21009 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCT
775 TGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCT
* *
21074 GATCGGTGGCATTAGGGTTCCGACGATCGGGGGGCCGGTGTGTGT
840 GACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCGG-GTGTGT
* * * * *
21119 GCACTTGATGTGGGATGGGTGCTGGTACATGGCCCTTATATTGTCCCCCTATCTCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
21184 TCGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
21249 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTAAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
** ** *
21314 TGAATTTTTTTGTGCATGCCAACAAAAATACAAAAATCACGTCTAAAAACTTTGGGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** *
21379 CCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCATGAGAAATAGAAA
261 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
21444 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
326 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
21509 ATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
391 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
21574 CCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CC-GCCCGCCTGTTCGTTTC
456 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCCTGCCCGCCCGTT-GTTTC
* *
21637 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGA
520 GTCGGTTGGCTTAGGCATAT-GAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGG
* * * * * *
21702 TAGCAGGATCAGCAGCATGTGGAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGCCCTTTT
584 TAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATC-CGCCCCTCT
* * *
21767 GGCCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
648 GGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
21832 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTGGTGGCAGCAGATGC
713 CTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGC
* *
21897 TAGGCTCGGGCATGTGCTGGTGCCGTATTTCTCATCGTCGGGGCACCATCACCGGAGAACCTGAC
778 TAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCTGAC
* *
21962 CGGCGGCATTAGGGTTCC-AGCGATCGGGGCGGCCGGGGGGGTTT
843 CGGCGGCATTAGGGTTCCGA-CGATCGGGG-GGCC--GGGTGTGT
*
22006 GCACACATGATGTGCGATGGGTGCTGGTACTTTGGCCCTTATAATGG--CCCTATCCCTCATCAA
1 G--CACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
22069 ACTTTGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCA
63 ACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
22134 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTCACAAAATCTTGTACACTTCAAGTTT
127 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTT
* *
22199 T-AGCTGAATTTTTTTGAGCATGCCAACAAAAATACAAGGATCAACGTCTACCAATTTTGGGGCC
191 TAAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCC
* *
22263 AAAACTCCTTTCGAAAAAA-TTTAAAAAATCCCGAACCATCAAAAAG-TTTGAAAATCATGAAAA
255 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCA-CAAAAAGTTTTGAAAATCATGAAAA
*
22326 ATAGAAAACGAGTCATCTTGCCA-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
319 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
22390 ACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
384 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
22455 TATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGTCC
449 TATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG-C-GCCTGCCCGCCC
** * * * * *
22520 GCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGATCA-GACTG
512 G-TTGTTTCGTCGGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATC-GAACAGGACCG
* * * * * ** * * *
22584 AGGGTTGCAGCAGCAGGATTGGCAACACACAGAGGGGGACTCGGCTGATCCCCGACTTGCGCATC
574 AGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCAT-
* * * *
22649 CCACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTGGGCATACGGAGTT
638 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
22714 CATTCCCAG--T---C-T-A--AG---A-T--C-G-----GA-T----CGGACGGAGGGTTACGA
703 CATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGG
* * * * *
22753 CAGCAAATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCATCGGGACACCATCGTCGG
768 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGG--------G-C--
* * * * ** * *
22818 AGCATCGCCGGAGAACCTGACCGACGACGTT-GGAGTTTTGGCGATC---GGG--GGG-GTGC
822 ACCATCGCCGGAGAACCTGACCGGCGGCATTAGG-GTTCCGACGATCGGGGGGCCGGGTGTGT
* *
22874 GCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
22939 TCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
23004 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCGTACACTCTTGAGTTTTTA
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACACT-TCGAGTTTTAA
* * *
23069 GCTGAATTTTTTTGTGCAATGGCAACAAAAATACAAGGATAAC-TCTACCAAG-TTGGGGCTAAA
194 GCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
23132 ACGCCTTCCAAAAAAATTTT-TAAAATCTTGAAACCACAATAAAGGTTTGAAAATCATGAAAAAT
258 ACTCCTTCCGAAAAAATTTTAAAAAATCCTG-AACCACAA-AAAGTTTTGAAAATCATGAAAAAT
23196 AGAAAAACG-GTCGTCTTGCCATGAAACGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
321 AG-AAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
23260 AC-AGCCA-CAAAAT-GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA-CTACCACCC
384 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** *
23321 TAATCGATCCACGGCTTG-GCATCC-GTCTCTCTGGCCTGCGTAGT------G-CTTACCG---A
449 T-ATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCCTGCCCGCCCG
* * * * *
23374 TCGTTT-GTCAGTTGGCTTAGGCATAGGAGTTCATT-CCAGTCTAA-A--GAAAAGGATCGATCG
513 TTGTTTCGTCGGTTGGCTTAGGCATATGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGA--G
* * * * * * *
23434 AGGATGCGGTAGTAAGGGATCGGCAACA-GCAAGATGGGTTACCGACTAATCCTGACTTTTGCAT
576 -GGTTACGGTAG-CA-GGATCGGCAGCACG-TAGA-GGG----GGAC----CC-GAC---CG-A-
* * *
23498 CTCGCCCCTCTGGCCGACTTGCGCTTCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTT
622 -T-----C-C---CCGACTTGCGCATCC-GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTT
* *
23563 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACA-GATTTCATTCCCAGTC
676 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTC
** * * * *
23627 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCTCAGGCATGTGCTGG-GCCATA
740 TAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTA
* * **
23691 TTTTTCTTCG-CTTGGGCACCATCACTGGAGCATCGTCGGAGAACCTGACCGGTAGCATT-GGCG
805 TTTTTCATCGTC-GGGGCACCAT--C----G---C--CGGAGAACCTGACCGGCGGCATTAGG-G
** * * *
23754 TTCCGGTGATCGGGGGGGTCGGGGGGGTTTGC
857 TTCCGACGATC-GGGGGG-C---CGGGTGTGT
*
23786 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACC
1 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
23851 TCTAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
66 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
23915 AGTGTCTGAAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
131 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
* *
23980 TGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACT
196 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
24045 CCTTCCGAAAAAATTTTAAAAAATCCTGATCCGCAAAAAAGTTTTGAAAATCGTGAAAAATAGAA
261 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCAC-AAAAAGTTTTGAAAATCATGAAAAATAGAA
* *
24110 AACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGC
325 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
24175 CAT-AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
390 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
24239 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGTCTGCCTACCTGCCCGCTCGCTCGT
455 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG-C-GCCTGCCCGCCCG-TTGT
* * * * * * *
24304 CTCATCGGTGGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTTA
517 TTCGTCGGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTA
* * * * * * *
24369 CAGTAGCAAGATTGGCAGCACGCAGAGGCGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCC
581 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC-GCCCC
* * * * *
24434 TCTGGCCTG-CTGAGCACCTGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
645 TCTGGCC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
24498 CAG--T---C-T-A--AG---------A-TC-AA-A-T----CAGACCGAGGGTTGCGGCAGCAC
709 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAC
* * **
24537 ATGCTAGGCTTGGGCATGTGCTGGTGTCACATTTTTC-TCG-CTGGGGAACCATCGTTGAAGCAT
774 ATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTC-GGGG---CA-C-------CAT
* * * * * * * * *
24600 CGTCGGAGAACCTGACCGACGGTATTCGGGATCTGGCGATCAGGGGGGTCGGGGGTGTT
827 CGCCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGTGTG-T
24659 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
1 -GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
24724 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTA
65 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
24789 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTTTTTAA
130 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAA
* * * *
24854 -CTGAA-TTTTTTGTGCATGCCAAAAAAAATACAATGATCACATCTACCAAGTTTGTGGCCAAAA
194 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
24917 CTCCTTCCGAAAAAATTTT-AAAAATCCTGAACCGCAAAAAGTTTCGAACATCATGAAAAATAGA
259 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGA
* * *
24981 AAATGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
324 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
25046 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
389 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
Statistics
Matches: 5772, Mismatches: 580, Indels: 616
0.83 0.08 0.09
Matches are distributed among these distances:
845 3 0.00
846 4 0.00
848 2 0.00
849 16 0.00
850 11 0.00
851 33 0.01
852 8 0.00
856 7 0.00
857 1 0.00
860 1 0.00
861 2 0.00
864 2 0.00
865 47 0.01
866 207 0.04
867 123 0.02
868 67 0.01
869 58 0.01
870 125 0.02
871 7 0.00
872 99 0.02
873 80 0.01
874 214 0.04
875 99 0.02
876 176 0.03
877 61 0.01
878 30 0.01
879 33 0.01
880 85 0.01
881 37 0.01
882 187 0.03
883 153 0.03
884 41 0.01
885 340 0.06
886 227 0.04
887 283 0.05
888 206 0.04
889 662 0.11
890 93 0.02
891 339 0.06
892 176 0.03
893 61 0.01
894 133 0.02
895 122 0.02
896 132 0.02
897 37 0.01
898 30 0.01
899 16 0.00
900 9 0.00
901 45 0.01
902 118 0.02
903 3 0.00
904 1 0.00
905 7 0.00
906 44 0.01
907 3 0.00
908 26 0.00
909 161 0.03
910 97 0.02
911 164 0.03
912 113 0.02
913 19 0.00
914 1 0.00
917 3 0.00
918 2 0.00
922 8 0.00
926 7 0.00
927 28 0.00
928 11 0.00
929 17 0.00
930 2 0.00
932 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCGCCTGCCCGCCCGTTGTTTCG
TCGGTTGGCTTAGGCATATGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTACGGTA
GCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCGCCCCTCTGGC
CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTAG
GCTCGGGCATGTGCTGGTGCCGTATTTTTCATCGTCGGGGCACCATCGCCGGAGAACCTGACCGG
CGGCATTAGGGTTCCGACGATCGGGGGGCCGGGTGTGT
Found at i:21839 original size:26 final size:26
Alignment explanation
Indices: 21810--21862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21800 GTTGACTTAG
21810 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21836 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21862 G
1 G
21863 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23617 original size:26 final size:26
Alignment explanation
Indices: 23578--23630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23568 GTTGACTTAG
23578 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
23604 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
23630 G
1 G
23631 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.