Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168261.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25043
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Found at i:1052 original size:26 final size:26
Alignment explanation
Indices: 1016--1068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1006 CCAGTTCGAT
1016 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
1042 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1068 C
1 C
1069 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1936 original size:26 final size:26
Alignment explanation
Indices: 1898--1950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1888 CTAGTCGAAT
*
1898 CTTACACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
1924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
1950 C
1 C
1951 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:3223 original size:893 final size:890
Alignment explanation
Indices: 146--5470 Score: 6701
Period size: 895 Copynumber: 6.0 Consensus size: 890
136 CCAATCCAAT
* * * * * *
146 CTTACACTGGGAATGAACT-TCGTATGCCTAAGTCTACCCACAAAACGAGCGTGCGGGTGCTCAA
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * ** * *
210 CCGGCCAGAGGGGCAGGATGCACAAGTCGAGGATTGGCCGGG-CCTCCCCCTGCGTGC-GATCGA
65 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCT--GTGCTG-CCGA
* ** * * * ** *
273 TCCTACTGTCGCAACCCTTGATCCGTTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
127 TCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
338 CAATCGACAAAACGAGCGGGCGGGCAGACACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGT
192 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * * * * * * *
403 GGATCAACATGGTGGTAGGTGGGTTTTGGGACATCTTCATATTTTTGCCATGTCAATGCCATTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTT
* * *
468 TATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCATGTGATGTTTCATGGCAAGATGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
533 CGTTTTCTATTTTTCATGATTTTTTAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAG
386 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAG
* * *
598 AAGGAGTTTTGGACCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGTATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
663 TTCAGCTAAAAACTCAAAGTGTACAGGATTTTTTGACCATTTCAAAAAAAGTGTCTCCATTTCAA
516 TTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAG
* * *
728 ACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTCAAGGGGATGTGAGTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
793 CTCGAGGTTTGATGAGGCATAAGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCACACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
858 TGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGA
710 TGTGCACAC-CCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * * *
923 CGCTACGGCGATGGTGCCTCGGGCG-AAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATG
774 TGCTCCGACGATGGTCCCT-GGG-GAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* *
987 TGCACCCGCAACCCTTGGTCCAGTTCGATCTTACACTGGGAATGAACTCCGTATG
837 TGCACCCGTAACCCTCGGTCCAG-TCGATCTTACACTGGGAATGAACTCCGTATG
* * * *
1042 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
1107 CGGCCAGAGGGGCAAGATGCGTAAGCTGGGGATCGATCAGAT--CCCCCTTGCATGATGCTGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCTG--TGCTGCCGATC
* * * * **
1170 CTGCTACTGCAACCCTTGCTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATTTCTAAGCCA
129 CTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * *
1235 ACCGACGAAATAAGCAGTCGAGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
194 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
1300 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTTA
* *
1365 TGGCATGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA-AGCGACTC
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA-CGACTC
* * * *
1429 GTTTTCTATTTTTTACGATTTTCGAAACTTTTTATGGTTC-GAGATTTTTTTAAAATTTTTTC--
387 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAG
*
1491 -AGGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT-CAACAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAA
*
1554 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
515 ATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
1619 ACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
1684 CTCGAGATTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
1749 TGTGCGCACACGCCCCGCCCCCCAATCGTTGGAACCCCAATGCCGTCGGTCAAGTTCTCCG--G-
710 TGTGCACAC-CCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * *
1811 TGAT--G--G-TGG-CCC-GGGTGAAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATG
774 TGCTCCGACGATGGTCCCTGGG-G-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
1869 TGCACCCGTAACCCTCGGTCTAGTCGAATCTTACACTAGGAATGAACTCTGTATG
837 TGCACCCGTAACCCTCGGTCCAGTCG-ATCTTACACTGGGAATGAACTCCGTATG
* * * *
1924 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * ** ** * * *
1989 CGGCCAGTGGGGTAGGATGCGTAAGTCGGGGATCGGCCGGGTCCCCCCTGTGTGCTACTGATCTT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCTGTGCTGCCGATCCT
* * * *
2054 GCTTCCGTAACCCTTGGTCTGGTCTGATCTAAGACTGGGAATGAACTCCGTATCCCTAAGCCAAC
131 GCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * *
2119 CGACGAAACGAGCGGGCGGGCGGGCACTACGTTGGCCAGAGAGGCAGGATGCGCAAGCCGTGGGT
196 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
2184 CGATAGGGTTGTTGGTGGCTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
261 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATTTTTATG
*
2249 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
2314 TTCTATTATTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGG
390 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGG
* * *
2379 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTTA
455 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
2444 GCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
520 GCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2509 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
2574 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAACCACCCATCGCACATCATGTGC
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
2639 ACACCCCCCCACCCCGCCAATCGTCGGAACCCTAATGCCG-CGGTCAAGTTCTCCGACGATGCTC
715 ACACCCCCCCACCCC-CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * *
2703 CGACGATGGTACCCTGGGGGAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGTATGTGCACC
779 CGACGATGGT-CCCTGGGGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * * *
2768 CATAACCCTCGGTCCAGTCTGATCTTACACTAGAAATGAACTCCGTAAG
843 CGTAACCCTCGGTCCAGTC-GATCTTACACTGGGAATGAACTCCGTATG
*
2817 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
2882 CGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCAATCGGGTCCCCCCCCATGTGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCC-TGTGCTGCCGATCC
* * * * *
2947 TGTTACCGTAACCCTTGGTCTGTTCTGATCTAAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
3012 CCGACGAAATGAGCGGGCGGGCGGGCATTATGCCGGCCAGAGAGGTAGGATGCGCAAGTCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* ** * *
3077 TCAATAATGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATG
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
** *
3142 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTGTGGCGAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
3207 TTTTATTTTCCATGATTTTTGAAACTTTTTATGGTTC-GAGATTTTTTTAAAATTTTTTCAGAAG
390 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAG
* * * *
3271 GTGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT
454 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
3336 AGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
3401 TTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
3465 AGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCACCACCCAACGCACATCATGAC
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG--
* * *
3530 TGCAC-CACCCCTACCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCTG-CGATG
712 TGCACACCCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATG
* *
3593 CTCC-AGCGATGGTGCCCTGGGCGAAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATG
776 CTCCGA-CGATGGT-CCCTGGG-G-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
3657 TGCACCTGCAACCCTCGGTCCAGTGCGATCTTACACTGGGAATGAACTCTGCATG
837 TGCACCCGTAACCCTCGGTCCAGT-CGATCTTACACTGGGAATGAACTCCGTATG
* * *
3712 CTTAGACTAGGAATAAACTCTGTACGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * **
3777 CGGCCAGAGGGGCAGGATACACAAGCTGGGGATCAATCGAGT-CCCCCCCTGCGAGCTGCTAATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCT--GTGCTGCCGATC
** *
3841 CTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
3906 ACCGACGAAACGAGCGGGTGGGCGTGCATTACGTCGGCCAAAGAGGCGGGATGCGCAA------G
194 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
3965 --C--T---GTGG-A--------T-CG-ACATCTT--T-TTGC--CATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * * *
4007 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGTAGTTTCATGGCGAGATGACTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
4072 TTT-TAATTTTCCATGATTTTCGAAACTTTTTACGGTTCCA-AATTTTTTT-TAATTTTTTCAGA
389 TTTCT-ATTTTTCATGATTTTTGAAACTTTTTACGGTT-CAGGATTTTTTTAAAATTTTTTCAGA
* * *
4134 AGGAGTTTTGTCCCCAAACTTTGTAGACGTGATCCTTGTACTTTTT-TTGGCATGCACAAAAAAA
452 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAA
* * *
4198 TTTAGCTAAAAACTCAGAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
4263 CAGTTTAATGGCTACTGGCAGCAAAACTGTAAAATTTCAAATGTTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
4328 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATTGCACATCAT
646 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
4393 GTGCACA------CACCCCCCAATCATCGGAACCCCCAATTTCGTCAGTCAGGTTCTCCGACGAT
711 GTGCACACCCCCCCACCCCCCAATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** * *
4452 GCTTCGGCGATGGTGCCCCAGGCAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
775 GCTCCGACGATGGT-CCCTGGGGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * ** *
4517 CACCTGTAACCCTCGATCTGGTCCGATCTTACACTGGGAATGAACTCCATATG
839 CACCCGTAACCCTCGGTCCAGT-CGATCTTACACTGGGAATGAACTCCGTATG
* * * * * * * *
4570 CTTAGACTGGGAATGAACTTTGTATTCCTAAGTCAACCCACAAAATGAGCGTGCAGGAGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
4635 CGGCCAGAGGGGCAGGATACGCAAACCGGCGATCGATCGGG-CCCACCTCTGCGC-G-CGATCGA
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCTGTGCTGCCGATC-C
* * * * * *
4697 TCCTACTGTCATAACCCTCGATCTGGTATGATCTTAGACTGGGAAATGAACACCGTATGCCTAAG
130 TGCTACCG-C--AACCCTTGGTCTGGTCTGATCTTAGACTGGG-AATGAACTCCGTATGCCTAAG
* * *
4762 CCAACCGACGAAAC-AGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCT
191 CCAACCGACGAAACGA-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
4826 GTAGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
255 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATT
*
4891 TTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-A
319 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* *
4955 CCTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTT
384 -CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTT
* * * * * * *
5020 TAGAAGGATTTTTGACTCCAAACTTGGAAGACATGATCCTTGTATTTTTTTTGGCATGTACAAAA
448 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
5085 AAATTCAGCTAAAAACTCGAACTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCCTTTC
513 AAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
5150 AGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
578 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
5215 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
643 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
5280 TATGTGCGCACACCCACCCCGCCCCCCCAATCGCCAGAACCCCCAATTCCGTCGGTCAGGTTCTC
708 CATGT--GCACACCC-CCCC-ACCCCCCAATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTTCTC
* *** * *
5345 CGACGATGCTCCGACGATGGTGCCCCAGATTAAAAAAAATTTGGCACCAGCACATGCCCGAGCTC
768 CGACGATGCTCCGACGATGGT--CCCTGGGGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * ** * *
5410 AACATGTGCACCTGTAACCCTCAATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATG
831 AGCATGTGCACCCGTAACCCTCGGTCCAGT-CGATCTTACACTGGGAATGAACTCCGTATG
5471 TTTAAGCCAT
Statistics
Matches: 3890, Mismatches: 432, Indels: 209
0.86 0.10 0.05
Matches are distributed among these distances:
854 3 0.00
855 7 0.00
856 4 0.00
858 207 0.05
859 90 0.02
860 43 0.01
864 5 0.00
865 174 0.04
866 198 0.05
867 2 0.00
868 3 0.00
869 2 0.00
871 7 0.00
872 6 0.00
873 2 0.00
880 4 0.00
881 4 0.00
882 474 0.12
883 12 0.00
884 31 0.01
885 275 0.07
886 6 0.00
887 4 0.00
888 5 0.00
889 126 0.03
890 242 0.06
891 198 0.05
892 205 0.05
893 541 0.14
894 185 0.05
895 589 0.15
896 88 0.02
899 1 0.00
900 57 0.01
901 90 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCCCTGTGCTGCCGATCCT
GCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
CACCCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTCCCTGGGGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGT
AACCCTCGGTCCAGTCGATCTTACACTGGGAATGAACTCCGTATG
Found at i:7092 original size:26 final size:26
Alignment explanation
Indices: 7056--7109 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
7046 TCCAGTCTGA
* *
7056 GCTTACACTGGGAATGAACTCCGTAT
1 GCTTACACTGGGAATAAACTCCATAT
*
7082 GCTTAGACTGGGAATAAACTCCATAT
1 GCTTACACTGGGAATAAACTCCATAT
7108 GC
1 GC
7110 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
GCTTACACTGGGAATAAACTCCATAT
Found at i:7420 original size:900 final size:896
Alignment explanation
Indices: 5443--8682 Score: 4809
Period size: 900 Copynumber: 3.6 Consensus size: 896
5433 ATCCGGTCCA
* ** * * *
5443 ATCTTACACTGGGAATGAACTCCGTATGTTTAAGCCATCCGACGAAACGAGCGGGCAGCCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCA
*
5508 CTACGCCGGCCAGAGAGGCGAGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
5573 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
5638 TAAGCGTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
5703 TTTTACGATTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
261 TTTTACGATTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
5768 TGATCCTTGTATTTTTCTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* *
5833 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
5898 AAAATCTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * * * * *
5962 ATAAGGGCCGAGTACCAGCACCCACCGCACAGCATGTGCACACAACCCCCCTCCCCCTCAATCGT
521 ATAAGGGCCAAGTACCAGCACCCATC-TACATCATGTGCGCACACCCCCCCCCCCCCCCAATCGC
* * * *
6027 CGAACCCCCAATGCCGCCAGTGAGGTTCTCTAATGATGCTCCGGTGATGGTGCCCCGGGCAAAAG
585 CGAACCCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCCGGGCAAAA-
* * *
6092 AAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGC-TCTCGCAACCCTCAGTCCGGTCTGA
649 AAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCACCT-GCAACCCTCAGTCCAGTCTGA
* * *
6156 TCTTACACTGGGAATGAACTTCGTATGCTTAGACTCAGAATGAACTCCATATGCCTGAGTCAACG
713 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCATATGCCTAAGTCAACC
* * * *
6221 CACGAAACGAGCGTGCGAGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATTGATC
778 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGATC
** * * * *
6286 GGGTCCCTTTCTGTATGCTGTCGATCTTGCTGTTGCAACCCTTGGTCTGGTCTG
843 GGGTCCCCATCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTG
** * *
6340 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTTACGAAACGAGCGGACAAGAGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCA
* * * * * *
6405 CTACGTCGGCCAGAGAGGTGGGTTGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
6470 ACACCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
6535 TATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
* * * * * *
6600 TTTTATGGTTC-GAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGACTCCAAGCTTGGTCGAC
261 TTTTACGATTCTG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
6664 ATGATCCTTGTATTTTT-TTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAGGA
325 ATGATCCTTGTATTTTTCTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* *
6728 TTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGTAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
6792 GTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
6857 ATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACACCTCCCCCCGCCCCCCCAA
519 ATATAAGGGCCAAGTACCAGCACCCATC-TACATCATGTGCGCACACC-CCCCCC-CCCCCCCAA
* * * * * * *** * *
6922 TCGCCAAAACCTCCAATTCCGCCGGTCAAGTTCTCCGACCATGCTCCGACAATGGTTCCCCAGGC
581 TCGCC-GAACCCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCCGGGC
* *
6987 AAAAAACAAT-TCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCAATCCAG
645 AAAAAA-AATAT-GGCACCAGCACATGCCCGAGCCCAACATGTGCACCTGCAACCCTCAGTCCAG
* ** *
7051 TCTGAGCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCATATGCCTAAGT
708 TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCATATGCCTAAGT
* ** * *
7116 CAACCCACGAAACGAACGTGCGGGCACTCAACCGACCAGAGGGGCAGGATGCACAAGCTGGGGAT
773 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGAT
* * * * ** * *
7181 CGACCAGGTCCCCATCTGCATGCTGTCGATCCTACTACTGCAACCCTCAATCTGATTTG
838 CGATCGGGTCCCCATCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTG
* ** *
7240 ATCTTAGACTAGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCA
* * * * *
7305 CTACGCCGGCCAAAAAGGTGAGATGTGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
7370 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
7435 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAAT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
**
7500 TTTTACGATTCTGGA-TTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAACTTGGTAGACA
261 TTTTACGATTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * *
7564 TGATCCTTGTATTTTTTTTGGCTTGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* *
7629 TTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTAT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
7693 AAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
7757 ATAAGGGCCAAGTACCAGCACCCA-CTGCACATGATGTGCGCACAACCCCCCACCCCGCCCCCTA
521 ATAAGGGCCAAGTACCAGCACCCATCT--ACATCATGTGCGCAC-ACCCCCC-CCCC-CCCCC-A
* * * *
7821 ATCGCCGGAACCCCCAATGCCGTCGGTCAGGTTCTCTAGCGATGCTCCGGTGATGGTGCCTCGGG
580 ATCGCC-GAACCCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCCGGG
* * * * *
7886 CAAAAAAAAATATGCCACCAGCACATGCCCGAGCCTAACATGTGCACCCGTAACCCTCAGT-CTG
644 C-AAAAAAAATATGGCACCAGCACATGCCCGAGCCCAACATGTGCACCTGCAACCCTCAGTCCAG
* *
7950 ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCGTATGCCTAAG
708 -TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCATATGCCTAAG
* * *
8015 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCAGGATGCACTAGTTGGGGA
772 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGA
* * *
8080 TCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTG
837 TCGATCGGGTCCCCATCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTG
* * *
8140 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCA
* *
8205 CTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
8270 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
8335 TAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAGGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
* * * * *
8400 TTTTAC-AGTTCAGGATTTTTTTTAAA-TTTTTCAGAAGGGGTTTTGGCCCAAAAATTGGTAGAC
261 TTTTACGA-TTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * * *
8463 ATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCACCTAAAAACTCAAAGTGTATAGGAT
325 ATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
*
8528 TTTGTGACCGTTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
8592 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
8657 TATAATGG-CAAGTACCAGAACCCATC
520 TATAAGGGCCAAGTACCAGCACCCATC
8683 GCACATTGTC
Statistics
Matches: 2098, Mismatches: 220, Indels: 46
0.89 0.09 0.02
Matches are distributed among these distances:
896 67 0.03
897 453 0.22
898 90 0.04
899 211 0.10
900 1199 0.57
901 78 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (896 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCA
CTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACT
TTTTACGATTCTGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCTACATCATGTGCGCACACCCCCCCCCCCCCCCAATCGCC
GAACCCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCGGTGATGGTGCCCCGGGCAAAAAA
AATATGGCACCAGCACATGCCCGAGCCCAACATGTGCACCTGCAACCCTCAGTCCAGTCTGATCT
TACACTGGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCATATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGATCGGG
TCCCCATCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCGGTCTGGTCTG
Found at i:7986 original size:26 final size:26
Alignment explanation
Indices: 7957--8009 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7947 CTGATCCGAT
**
7957 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTCAGAATGAACTCCGTATG
*
7983 CTTAGACTCAGAATGAACTCCGTATG
1 CTTACACTCAGAATGAACTCCGTATG
8009 C
1 C
8010 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTCAGAATGAACTCCGTATG
Found at i:9660 original size:16 final size:16
Alignment explanation
Indices: 9634--9699 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
9624 TCACACTTGT
9634 CTTTAGGATTTTTAGGA
1 CTTT-GGATTTTTAGGA
* *
9651 CTTTGGATTTTAAGAGG
1 CTTTGGATTTTTAG-GA
* * *
9668 TTTTGAATTTTTGGGGA
1 CTTTGGATTTTT-AGGA
*
9685 TTTTGGATTTTTAGG
1 CTTTGGATTTTTAGG
9700 GGTTTTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
16 11 0.29
17 26 0.68
18 1 0.03
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (16 bp):
CTTTGGATTTTTAGGA
Found at i:9672 original size:17 final size:16
Alignment explanation
Indices: 9652--9705 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
9642 TTTTTAGGAC
*
9652 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
* *
9669 TTTGAATTTTTGGGGAT
1 TTTGGATTTTAGGGG-T
9686 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
9703 TTT
1 TTT
9706 AAAAACTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
16 3 0.10
17 19 0.63
18 8 0.27
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.54
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:10238 original size:17 final size:17
Alignment explanation
Indices: 10216--10257 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
10206 CAATTCGATA
10216 GGTGGTTCAGGCAGTCC
1 GGTGGTTCAGGCAGTCC
10233 GGTGGTTCAGGCAGTCC
1 GGTGGTTCAGGCAGTCC
*
10250 AGTGGTTC
1 GGTGGTTC
10258 GGACCGACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.12, C:0.21, G:0.40, T:0.26
Consensus pattern (17 bp):
GGTGGTTCAGGCAGTCC
Found at i:17160 original size:17 final size:16
Alignment explanation
Indices: 17140--17193 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
17130 TTTTTAGGAC
*
17140 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
17157 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
17174 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
17191 TTT
1 TTT
17194 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:17476 original size:26 final size:26
Alignment explanation
Indices: 17447--17499 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17437 CCAGTCCGAT
*
17447 CTTACACTT-GAAATGAACTCCGTATG
1 CTTACA-TTGGAAATAAACTCCGTATG
* *
17473 CTTAGATTGGGAATAAACTCCGTATG
1 CTTACATTGGAAATAAACTCCGTATG
17499 C
1 C
17500 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTACATTGGAAATAAACTCCGTATG
Found at i:18361 original size:26 final size:26
Alignment explanation
Indices: 18332--18384 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18322 CTGATCCGAT
* *
18332 CTTACATTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18384 C
1 C
18385 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:21032 original size:28 final size:27
Alignment explanation
Indices: 20992--21048 Score: 87
Period size: 28 Copynumber: 2.1 Consensus size: 27
20982 TGGTCATGAT
20992 CTTACACTGGGAATGAACTCCGTAATGC
1 CTTACACTGGGAATGAACTCCGT-ATGC
* *
21020 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTACACTGGGAATGAACTCCGTATGC
21047 CT
1 CT
21049 AAAGTCAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (27 bp):
CTTACACTGGGAATGAACTCCGTATGC
Found at i:21905 original size:26 final size:26
Alignment explanation
Indices: 21876--21928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21866 CCGGTCTGAT
*
21876 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
21902 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
21928 C
1 C
21929 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:22799 original size:26 final size:26
Alignment explanation
Indices: 22770--22822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22760 CCGGTCCGAT
22770 CTTACACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* *
22796 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
22822 C
1 C
22823 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:23250 original size:894 final size:894
Alignment explanation
Indices: 17283--25043 Score: 9540
Period size: 894 Copynumber: 8.7 Consensus size: 894
17273 GTCAACACGT
* ** * *
17283 ATCATGTGTGCACA-CCCCCGCCCCCTTCAATCGTCGGAAACCTTAATGCCATCGGTCACGTTCT
1 ATCATGTGCGCACACCCCCCGCCCCC--CAATCGTCGG-AACCCCAATGCCGTCGGTCAGGTTCT
* * **
17347 CCGGCGATGCTCCGGCGATGGAGCCCCGGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCC
63 CCGGCGATGCTCCGACGATGGTGCCCC-GGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCC
* * ** * *
17411 CAGCATGTGCACCCGCAACCCTTGATCCAGTCCGATCTTACACTTGAAATGAACTCCGTATGCTT
127 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
* * * ** * * ** * *
17476 AGATTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAATAAGTGGGTAGGCGCTCAACCGA
192 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* *
17541 CCAGAGGGGCAGGATGCACAAGCTGGGGATCGG-TCGGGTCCCCCCCTGTGTGCTGCCGATCCT-
257 CCAGAGGGGCAGGATGCACAAGCCGGGGATCGGCT-GGGT-CCCCCCTGCGTGCTGCCGATCCTG
* * * * * * * * *
17604 CTTACCACAACCCTCGGTCCGATCCGATATTAGACTGGGAAAGAACTCCGTATGCCTAAGCTAAA
320 C-TACCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
17669 CGACGAAACGAGCGAGCGGGCAGGCACTACGCTGGCCAGAGATGAGGGATGCACAAACTGTGGAT
384 CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
17734 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTTCCATGCCAATGCCATTTTTATG
449 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
*
17799 GCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
514 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
17864 TTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
579 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
* * * *
17929 AGTTTTGGCCCTAAACTTTGTAGACGTGATGCTCGTATTTTT-TTGGCATGCACAAAAAAATTCA
644 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
17993 GCTAAAAACTCAAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
709 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
18058 TTAATTGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
774 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** *
18123 GGTTTGATGAGGGATAGGGGGCCAATATATTGGCCAAGTACCAGCACCCATCGCAC
839 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* *
18179 ATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCT-C
1 ATCATGTGCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
18243 --CG--G-T-----GATGGTGCCCTGGGTGAAAAAAAATACGGCACCAGCATAT-CCTCGAGTCC
65 GGCGATGCTCCGACGATGGTGCCC-CGGCGAAAAAAAATACGGCACCAGCACATGCC-CGAGCCC
* * * * *
18297 AGAATGTGCACTCGCAACCCTCGGTCTGATCCGATCTTACATTGGGAATGAACTCTGTATGCTTA
128 AGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * * *
18362 GACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCTGGC
193 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * ** * *
18427 CAGAAGGGTAGGATGCACAAGCCGGGGATTGGCCGGGTCCCTCCTGTGTGCTGTTGATCTTGCTG
258 CAGAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTA
* * * *
18492 CCGCAACCCTCAGTTC-GGTCCGATCTTAG-CTTGGGAATGAACGT-CATATGCCTAAGCCAATC
323 CCGCAACCCT-TGATCTGGTCCGATCTTAGAC-TGGGAATGAAC-TCCGTATGCCTAAGCCAACC
* * *
18554 GACGAAACGAGCGGGCGGGCGGACACTACGCCGGCCAGAAAGGCGGGATGCACAAGCCGTGGATC
385 GACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * ** *
18619 GATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCTGTGCTAATGCCATTTTTATGG
450 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
18684 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
515 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
18749 TCTATTTTTCACGATTTTCGAAACCTTTTACGGTTTGGGATTTTTTCAAAATTTTTT-AGAAGGA
580 TCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGA
* *
18813 GTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAG
645 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
18878 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTTG-AAAAAGTGTCCCCATTTCAGACACT
710 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18942 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGTTGTGAGTTCTCGA
774 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
19007 GGTTTGATGATGGATAGGGGGCCAATATAATGGCCAAGTTCCAGCACCCATTGCAC
839 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * ** *
19063 ATCATGTGCACACACCCCCCGCCCCCCAATCATCGGAACCCTAATGCCACCGGTCAGGCTCTCCG
1 ATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** ** *
19128 ATGATGCTCCGACGATGGTGCCAAGGCGAAAAAAAAATACGGCACCAGCACATGCCTGAGCCCAG
66 GCGATGCTCCGACGATGGTGCCCCGGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
19193 TATGTGCACCCGTAA-CC-C--T-T-G---G----T-C-C--GG--T---CT--G-AT-CTTACA
130 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* *
19232 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGCCGACCA
195 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * **** * * * *
19297 GAGGGGCAGGATGCATAAGCCGAGGATCGACCAAATCCCCCCTACATGTTGCTGATCCTGCTACC
260 GAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTACC
* * ** *
19362 ACAACCC-TCAGTCCAGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
325 GCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
19426 AAACGA----GCGGGCGGGCACTACGCCAGCCAGAGAGGCGAGG-TGCGCAAGCCGTGGATCGAT
389 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG-GGATGCGCAAGCCGTGGATCGAT
* * ** *
19486 AGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTATGCCATGCCAAAACAATTTTTATGGCTT
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
*
19551 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCT
518 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
19616 ATTTTTCACGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTT
583 ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * * * *
19681 TTGCCCCCAAACTTGGTAGAGGTGATCCTTGAACCTTTT-TTGGCGTGCACAAAAAAATTCAGCT
648 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCT
** * *
19745 CGAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
712 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
19810 AAGGCTA-TTGCAGCAAACCTGTAAAATATCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGT
777 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
19874 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
842 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * **
19927 ATCATGTGCACACACCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTTT
1 ATCATGTGCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * * * *
19992 GGCGATGCTCCGGTGATGGTGCCCCGAGCGAAAAAAAATATGGTAGCAGCACATGCCCAAGCCTA
65 GGCGATGCTCCGACGATGGTGCCCCG-GCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
20057 GCATGTGCACCTGCAACCCTCGATCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
129 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * ** * *
20122 ACTGTGAATCAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCC
194 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * *
20187 AGAGGGGCAAGATGCGCAAGCCAGGGATCGACTGGGTCCCCCCTGCATGCTGCCAATCTTGCTAC
259 AGAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTAC
* * * *
20252 CACAACCC-TCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
324 CGCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
20316 GAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGTCGTGGATCGAT
388 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
20381 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* *
20446 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTT
518 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * * *
20511 ATTTTTCATAATTTTTGAAAACTTTTTACCATTTGGGATATTTTAAAAATTTTTTGAGAAGGAGT
583 ATTTTTCATGATTTTT-AAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGT
* * *
20576 TTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
647 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
20641 AAAAAC-CGAAGTGTACCAGGATTTTGAGACCATATTGAAAAAAGTGTCCCCATTTTAGAAACTT
712 AAAAACTCGAAGTGTA-CAGGATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
20705 TAATCGCTACTGGCAGC-AACCT-TAAAATCTCAAATGCCCTTTAAGGGGGTGTGATGTTCCCGA
775 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-GTTCTCGA
20768 GGTTTGATTGAAGGGATAGGGGGCCAATATATAGGGCCAAGTACCAGCGACCCATTGCAC
839 GGTTTGA-TG-AGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGC-ACCCATTGCAC
* * * * * *
20828 ATATATGTGTGCACA-------CCCCCC-ATCGTCCGAAACCCAATGCCCGCCTGTCCA-GTTCT
1 AT-CATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATG-CCGTCGGT-CAGGTTCT
* * * ** * *
20884 CCGACGATAGCCTCCGACGATCGGTACCCGGGCGAAAAAAAAATGTGGCTACCCAGCACTTACCC
63 CCGGCGAT-G-CTCCGACGAT-GGTGCCCCGGCG-AAAAAAAATACGGC-A-CCAGCACATGCCC
* * * *
20949 TGA-CCTAGCATGTGCAACCCGTAACCCTCGATCTGGTCATGATCTTACACTGGGAATGAACTCC
122 -GAGCCCAGCATGTGC-ACCCGCAACCCTCGGTCTGGTC-CGATCTTACACTGGGAATGAACTCC
* * * *
21013 GTAATGCCTTAGACTGGGAATGAACTCTGTATGCCTAAAGTCAAACCCTACGAAAAGATCGTACG
184 GT-ATG-CTTAGACTGGGAATGAACTCCGTATGCCT-AAGTC-AACCC-ACGAAACGAGCGTGCG
* * * * * *
21078 GGTGGTCAGCCAGCCAGAGGGGCAGGATGCCACAAGTCAGGGAATCGGTTCGGGTCCCCCCTGCG
244 GGCGCTCAGCCGGCCAGAGGGGCAGGATG-CACAAG-CCGGGGATCGGCT-GGGTCCCCCCTGCG
* * * * * * * *
21143 TGCTGTCGATCCTGCTGCCGCAA-CCATCAGTTTCGGTCCCTGATCTTAAGACTAGGAACGCACC
306 TGCTGCCGATCCTGCTACCGCAACCCTTGA-TCT-GGT-CC-GATCTT-AGACTGGGAATG-AAC
* * * * *
21207 TCCGTATG-CTAAGCCAGACCGATGAAACAAGCGGGCGGACGGGCTCTACGCCGGCCAGATAGGC
365 TCCGTATGCCTAAGCCA-ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
** *
21271 GGGATGCAAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACA---TC-----T-T---
429 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
*
21324 -T----AT---A--TTT-TGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCATGTGAAGTT
494 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * **
21378 TCCATGGCAAAGACGACTTGTTGTTCTATTTTTCGATGATTTTTGAAACTTTTTAACGGTTCAAG
559 T-CATGGC-AAGACGACTCGTT-TTCTATTTTTC-ATGATTTTTAAAACTTTTT-ACGGTTCGGG
* *
21443 ATTTTTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTA
619 A--TTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
21508 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATT
681 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
* * *
21573 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTTAAA
746 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * ** *
21638 TGCTCTTTAAGGGGGCGTGAGTTCTCAAGGTTTGAT-ATTTGATAGGAGGCCAATATAAGGGCCA
811 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCA
21702 AGTACCAGCACCCATTGCAC
875 AGTACCAGCACCCATTGCAC
*
21722 ATCATGTGCGCACACCGCCCCCGTCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
1 ATCATGTGCGCACA-C-CCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * * *
21787 C-G-G-TGAT--G--G-T-GT-CTCGGGCGAAAACAAATATGGCACCAGCACATGCTCGAGCCCA
64 CGGCGATGCTCCGACGATGGTGCCCCGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * *
21842 GCATGTGCACCCACAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCTGTATGCTTAG
129 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * **
21907 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGGGCTCAGTTGGCC
194 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
21972 AGAGGGGCAGGATGCCCAAGCCGAGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCTGCTGC
259 AGAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTAC
* * * * *
22037 CGCATCCC-TCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGCCGAC
324 CGCAACCCTTGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
** ** * ** * *
22101 GAAACGAGTAGGCGGGCGGGCACTA-GTTGGCTAGAGAGATGGGATGCGCAAACCGTGGATCAAT
388 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * * *
22165 AGAGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCTACCATGCCATTGCCATTTTTATGGATT
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * * * *
22229 GTAAATTCACACAATGGCCCCTTAGGCCTTAATGTGAATTTTCATGGCAAGACGACTCGTTTTCT
518 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
22294 AATTTTCATGATTTTTAAAACTTTTTATGGTTCGAGAGTTTTTTAAAAATTTTTTGAGAAGGAGT
583 ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGT
* * *
22359 TTTGGCCCCAAACTTGATAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCT
647 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
22424 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
712 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
22489 ATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGT
777 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
22554 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
842 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * *
22607 ATCATGTGCGCACACCCCCCGTCCCCCAATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCG
1 ATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * **
22672 GTGATGCTCCGACGATGGTGCCTCGACAGAAAAAAAATACGGCACCAACACATGCCCGATTCCAG
66 GCGATGCTCCGACGATGGTGCCCCGGC-GAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
22737 CATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATCAACTCCGTATGCTTAGA
130 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * *
22802 CTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCA
195 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
22867 GAGGGGCAGGATGC-CTAAGCCGGGGATCGGCTGGGTCCCCCCTACGTGCTACCAATCCTGCTAC
260 GAGGGGCAGGATGCAC-AAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTAC
* ** * * *
22931 CGCAACCCTTGATCTAGTCTAATTTTATACTGGGAATGAACTCCGTATGCCTATGCCAACCGACG
324 CGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
22996 AAACGAGCGGGCGGGCGGGCACTACGTCAGCTAGAGAGGCGGGATGCGCAAGTCGTGGATCGATA
389 AAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* *
23061 GGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCATGCCAAT-CCATTTTTATGGCTTG
454 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* *
23125 TAAATTCATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTA
519 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
23190 TTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTT
584 TTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
* * * * * *
23255 TTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCACAAAACAATTTAGCTAA
649 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * * *
23320 AAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTGCCCATTTTAGACACTTTAAT
714 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
23385 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGCGTGAGTTCTCGAGGTTT
779 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
23450 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCATCCATTGCAC
844 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * * * *
23501 ATCATGTACGCACACCCCCGGCCCCCCCAATTGTTGGAACCCCAATGCCGTCGGTCAAGTTCTCT
1 ATCATGTGCGCACACCCCCCG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
23566 AGCGATGCTCCGACGATGGTGCCCCGAGCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCA
65 GGCGATGCTCCGACGATGGTGCCCCG-GCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * *
23631 ACATGTGCACCCGCAACCCTCAGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
129 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * *
23696 ACTAGGAATAAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCC
194 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
23761 AGAGGGGCAGGATGCACAAGCTGGGGATCGGCTGGGTCCCCCCCTGTGTGCTGTCGATCCTGCTG
259 AGAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGT-CCCCCCTGCGTGCTGCCGATCCTGCTA
* * * * * *
23826 CCACAACCCTTGTTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCGAT
323 CCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *
23891 GAAACAAGCGGGCAGACAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGAT
388 GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* *
23956 AGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTT
453 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* ** * *
24021 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACAACTCATTTTCT
518 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
24086 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTCCAGAAGGAGTT
583 ATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * *
24151 TTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCT
648 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * *
24216 AAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTATA
712 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* **
24281 ATGGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGGTCGAGGT
777 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
24346 TTGATGAGGGATAAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
842 TTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
* * * * * *
24400 ATCATGTGCGCACACCCCCCCGCCCCCCAATTGCCGGAACCCCAATGTCGTCAGTTAGGTTCTCA
1 ATCATGTGCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
24465 GGCGATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGCAGCACCAGGACATGCCAGAGCCC
65 GGCGATGCTCCGACGATGGTGCCCC-GGCG-AAAAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * *
24530 AGCATGTGCACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATGCCTA
128 AGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* ** *
24595 GACTGGGAATGAACTCTGTAT-CCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTCAGCCGGC
193 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * * * *
24659 CAGAGGGGCAAGATGCGCAAACCGAGGATCGGCCGGGTCCCCCCCTGCATGATGCCAATCCTGCT
258 CAGAGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGT-CCCCCCTGCGTGCTGCCGATCCTGCT
* * * * * **
24724 ACCGCAACCATCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCTATATGCCTAAGCCAACCGA
322 ACCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** * * * *
24789 C-AAATTG-GTTGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCA
387 CGAAA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* * * *
24852 ATAGGGTGGTAGGTGGGTTTATGCATATCTTCATATTTTTGTCATGCCAATGCCATTTTTATGGC
451 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
24917 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
516 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
24982 CTATTTTTCATGATTTTCAAAACTTTTTATGCTTCGGGACTTTTTTAAAATTTTTTCAGAAG
581 CTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
Statistics
Matches: 5950, Mismatches: 736, Indels: 356
0.84 0.10 0.05
Matches are distributed among these distances:
864 333 0.06
865 229 0.04
866 9 0.00
867 4 0.00
868 166 0.03
869 16 0.00
870 41 0.01
871 34 0.01
872 22 0.00
873 5 0.00
874 3 0.00
875 4 0.00
876 41 0.01
877 12 0.00
878 7 0.00
879 37 0.01
880 7 0.00
881 6 0.00
882 31 0.01
883 136 0.02
884 542 0.09
885 458 0.08
886 33 0.01
887 12 0.00
888 32 0.01
889 22 0.00
890 19 0.00
891 234 0.04
892 57 0.01
893 46 0.01
894 664 0.11
895 645 0.11
896 404 0.07
897 287 0.05
898 522 0.09
899 340 0.06
900 150 0.03
901 41 0.01
902 30 0.01
903 42 0.01
904 5 0.00
905 6 0.00
906 39 0.01
907 5 0.00
908 10 0.00
909 37 0.01
910 3 0.00
911 4 0.00
912 5 0.00
913 19 0.00
914 94 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
GCGATGCTCCGACGATGGTGCCCCGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCAGGATGCACAAGCCGGGGATCGGCTGGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCG
CAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
Found at i:24615 original size:26 final size:25
Alignment explanation
Indices: 24570--24619 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
24560 CCGATCTTAC
24570 ACTGGGAATGAACTTCGTATGCCTAG
1 ACTGGGAATGAACTTCGTAT-CCTAG
24596 ACTGGGAATGAAC-TCTGTATCCTA
1 ACTGGGAATGAACTTC-GTATCCTA
24620 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (25 bp):
ACTGGGAATGAACTTCGTATCCTAG
Found at i:24922 original size:898 final size:891
Alignment explanation
Indices: 19226--25043 Score: 7019
Period size: 895 Copynumber: 6.5 Consensus size: 891
19216 CCGGTCTGAT
* *
19226 CTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * * **
19291 CGACCAGAGGGGCAGGATGCATAAGCCGAGGATCGACCAAATCCCCCCTACATGTTGCTGATCCT
66 CGGCCAGAGGGGCAGGATGC-CAAGCCGAGGATCGGCCGGGTCCCCCCTACGTGCTGCCAATCCT
* * ** **
19356 GCTACCACAACCCTCAGTCCAGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
130 GCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * *
19421 CGACGAAACGA----GCGGGCGGGCACTACGCCAGCCAGAGAGGCGAGG-TGCGCAAGCCGTGGA
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACG-GGATGCGCAAACCGTGGA
* * * * ** *
19481 TCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTATGCCATGCCAAAACAATTTTTAT
259 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
*
19546 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* *
19611 TTTCTATTTTTCACGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
389 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * * * * *
19676 GATTTTTGCCCCCAAACTTGGTAGAGGTGATCCTTGAACCTTTT-TTGGCGTGCACAAAAAAATT
454 GAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATT
** * *
19740 CAGCTCGAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * * *
19805 CTTTAAAGGCTA-TTGCAGCAAACCTGTAAAATATCAAATACTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTC
* *
19869 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGT
* * * **
19934 GCACACACCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTTGGTCAGGTTCTTTGGCGATG
712 GCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCG--CGTCAGGTTC-TCAGCGATG
** * * * * *
19999 CTCCGGTGATGGTGCCCCGAGCGAAAAAAAATATG--GTAGCAGCACATGCCCAAGCCTAGCATG
773 CTCCGACGATGGTGCCCCGGGCGAAAAAAAA-ATGCAGCACCAGCACATGCCCGAGCCCAGCATG
** * * *
20062 TGCACCTGCAACCCTCGATCTGATCCGATCTTACACTGGGAATGAACTCCGTATG
837 TGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * ** *
20117 CTTAGACTGTGAATCAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20182 CAGCCAGAGGGGCAAGATGCGCAAGCC-AGGGATCGACTGGGTCCCCCCTGCATGCTGCCAATCT
66 CGGCCAGAGGGGCAGGATGC-CAAGCCGA-GGATCGGCCGGGTCCCCCCTACGTGCTGCCAATCC
* * * *
20246 TGCTACCACAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
20311 CCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGTGCAAGTCGTGGA
194 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAACCGTGGA
* *
20376 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
259 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
*
20441 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * ** * * * * *
20506 TTTTTATTTTTCATAATTTTTGAAAACTTTTTACCATTTGGGATATTTTAAAAATTTTTTGAGAA
389 TTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
* * *
20571 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
20636 CAGCTAAAAAC-CGAAGTGTACCAGGATTTTGAGACCATATTGAAAAAAGTGTCCCCATTTTAGA
517 CAGCTAAAAACTCGAAGTGTA-CAGGATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATTTCAGA
* * * *
20700 AACTTTAATCGCTACTGGCAGC-AACCT-TAAAATCTCAAATGCCCTTTAAGGGGGTGTGATGTT
580 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGA-GTT
* *
20763 CCCGAGGTTTGATTGAAGGGATAGGGGGCCAATATATAGGGCCAAGTACCAGCGACCCATTGCAC
644 CTCGAGGTTTGA-TG-AGGGATAGGGGGCCAATATA-AGGGCCAAATACCAGC-ACCCATTGCAC
* * * *
20828 ATATATGTGTGCACA-------CCCCCC-ATCGTCCGAAACCCAATGCCCGCCTGTCCA-GTTCT
705 AT-CATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATG-CCG-C-GT-CAGGTTCT
* * ** * *
20884 CCGACGATAGCCTCCGACGATCGGT-ACCCGGGCGAAAAAAAAATGTGGCTACCCAGCACTTACC
765 CAG-CGAT-G-CTCCGACGAT-GGTGCCCCGGGCGAAAAAAAAATGCAGC-A-CCAGCACATGCC
* ** * * *
20948 CTGA-CCTAGCATGTGCAACCCGTAACCCTCGATCTGGTCATGATCTTACACTGGGAATGAACTC
824 C-GAGCCCAGCATGTGC-ACCCACAACCCTCGGTCCGGTC-CGATCTTACACTGGGAATGAACTC
21012 CGTAATG
886 CGT-ATG
* * * * * *
21019 CCTTAGACTGGGAATGAACTCTGTATGCCTAAAGTCAAACCCTACGAAAAGATCGTACGGGTGGT
1 -CTTAGACTGGGAATGAACTCCGTATGCCT-AAGTC-AACCC-ACGAAACGAGCGTGCGGGCGCT
* * * *
21084 CAGCCAGCCAGAGGGGCAGGATGCCACAAGTC-AGGGAATCGGTTCGGGTCCCCCCTGCGTGCTG
62 CAGCCGGCCAGAGGGGCAGGATG-C-CAAGCCGA-GG-ATCGG-CCGGGTCCCCCCTACGTGCTG
* * * * * * * * * *
21148 TCGATCCTGCTGCCGCAACCATCAGTTTCGGTCCCTGATCTTAAGACTAGGAACGCACCTCCGTA
122 CCAATCCTGCTACCGCAACCCTCGGTCT-GGT--CTAATCTT-AGACTGGGAATG-AACTCCGTA
* * * * * * *
21213 TG-CTAAGCCAGACCGATGAAACAAGCGGGCGGACGGGCTCTACGCCGGCCAGATAGGCGGGATG
182 TGCCTAAGCCA-ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATG
* * *
21277 C-AAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGCACA---TC-----T-T----T---
246 CGCAAA-CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
*
21325 -AT---A--TTT-TGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCATGTGAAGTTTCCAT
310 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT-CAT
* * *
21383 GGCAAAGACGACTTGTTGTTCTATTTTTCGATGATTTTTGAAACTTTTTAACGGTTCAAGATTTT
374 GGC-AAGACGACTCGTT-TTCTATTTTTC-ATGATTTTTAAAACTTTTT-ACGGTTCGAGA--TT
*
21448 TTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCACAAACTTCGTAGACGTGATCCTTGTATTTTT
433 TTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTT
*
21513 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATTTGAAA
496 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
* *
21578 AAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTTAAATGCTC
561 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTC
* ** * *
21643 TTTAAGGGGGCGTGAGTTCTCAAGGTTTGAT-ATTTGATAGGAGGCCAATATAAGGGCCAAGTAC
626 TTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAATAC
*
21707 CAGCACCCATTGCACATCATGTGCGCACACCGCCCCCGTCCCCCAATCGTCGGAACCCCAATG-C
690 CAGCACCCATTGCACATCATGTGCGCACA-C-CCCCCGCCCCCCAATCGTCGGAACCCCAATGCC
* ** * * *
21771 -CGTC-GG---TCAG-G-TTCTCCGGTGATGGTGTCTCGGGCGAAAACAAATATG--GCACCAGC
753 GCGTCAGGTTCTCAGCGATGCTCCGACGATGGTGCCCCGGGCGAAAA-AAAAATGCAGCACCAGC
* *
21827 ACATGCTCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGA
817 ACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGA
*
21892 ACTCTGTATG
882 ACTCCGTATG
* * * *
21902 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGAGGGGGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
21967 TGGCCAGAGGGGCAGGATGCCCAAGCCGAGGATCGACCGGGTCCCCCCTACGTGCTGCCGATCCT
66 CGGCCAGAGGGGCAGGATG-CCAAGCCGAGGATCGGCCGGGTCCCCCCTACGTGCTGCCAATCCT
* * * * * *
22032 GCTGCCGCATCCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAGC
130 GCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * *
22097 CGACGAAACGAGTAGGCGGGCGGGCACTA-GTTGGCTAGAGAGATGGGATGCGCAAACCGTGGAT
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAACCGTGGAT
* *
22161 CAATAGAGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCTACCATGCCATTGCCATTTTTATG
260 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
* * * * * *
22225 GATTGTAAATTCACACAATGGCCCCTTAGGCCTTAATGTGAATTTTCATGGCAAGACGACTCGTT
325 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
22290 TTCTAATTTTCATGATTTTTAAAACTTTTTATGGTTCGAGAGTTTTTTAAAAATTTTTTGAGAAG
390 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAGAAG
* *
22355 GAGTTTTGGCCCCAAACTTGATAGATGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTC
454 GAGTTTTGGCCCCAAACTTG-TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
22420 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* ** *
22485 TTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTTG
583 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCG
*
22550 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGTG
* * * *
22615 CGCACACCCCCCGTCCCCCAATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGTGATGCT
713 CGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCG-CG-TCAGGTTCT-CAGCGATGCT
* * * * * **
22680 CCGACGATGGTGCCTC-GAC-AGAAAAAAAATACGGCACCAACACATGCCCGATTCCAGCATGTG
775 CCGACGATGGTGCCCCGGGCGA-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTG
*
22743 CACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATCAACTCCGTATG
839 CACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * *
22796 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
22861 CGGCCAGAGGGGCAGGATGCCTAAGCCGGGGATCGGCTGGGTCCCCCCTACGTGCTACCAATCCT
66 CGGCCAGAGGGGCAGGATGCC-AAGCCGAGGATCGGCCGGGTCCCCCCTACGTGCTGCCAATCCT
* * * * * *
22926 GCTACCGCAACCCTTGATCTAGTCTAATTTTATACTGGGAATGAACTCCGTATGCCTATGCCAAC
130 GCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * **
22991 CGACGAAACGAGCGGGCGGGCGGGCACTACG-TCAGCTAGAGAGGCGGGATGCGCAAGTCGTGGA
195 CGACGAAACGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAACCGTGGA
* *
23055 TCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCATGCCAAT-CCATTTTTAT
259 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* *
23119 GGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
*
23184 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
389 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* * * * * * *
23249 GATTTTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCTTGCACAAAACAATTT
454 GAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
23314 AGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTGCCCATTTTAGACAC
518 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
23379 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGCGTGAGTTCTCG
583 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCG
*
23444 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGA-ACCAGCATCCATTGCACATCATGT
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA-ATACCAGCACCCATTGCACATCATGT
* * * * *
23508 ACGCACACCCCCGGCCCCCCCAATTGTTGGAACCCCAATGCCGTCGGTCAAGTTCTCTAGCGATG
712 GCGCACACCCCCCG-CCCCCCAATCGTCGGAACCCCAATGCCG-C-GTCAGGTTCTC-AGCGATG
* *
23573 CTCCGACGATGGTGCCCCGAGCG-AAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAACATGT
773 CTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
23637 GCACCCGCAACCCTCAGTCTGGTTCGATCTTACACTGGGAATGAACTCCGTATG
838 GCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
23691 CTTAGACTAGGAATAAATTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
23756 CGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGGCTGGGTCCCCCCCTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGGATGC-CAAGCCGAGGATCGGCCGGGT-CCCCCCTACGTGCTGCCAATCC
* * * * * * *
23821 TGCTGCCACAACCCTTGTTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
129 TGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
23886 CCGATGAAACAAGCGGGCAGACAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAACCGTGGA
194 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAACCGTGGA
* *
23951 TCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
259 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* ** * *
24016 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACAACTCAT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * *
24081 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTCCAGAAG
389 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
* *
24146 GAGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATT
454 GAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATT
* * *
24211 CAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * **
24276 CTATAATGGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGGTC
582 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTC
*
24341 GAGGTTTGATGAGGGATAAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATG
647 GAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATG
* * * *
24406 TGCGCACACCCCCCCGCCCCCCAATTGCCGGAACCCCAATGTCGTCAGTTAGGTTCTCAGGCGAT
711 TGCGCACA-CCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCG-C-GTCAGGTTCTCA-GCGAT
* * *
24471 GCTCCGATGATGGTGCCCCGGGCGAAAAAAAAATGCAGCACCAGGACATGCCAGAGCCCAGCATG
772 GCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
* * *
24536 TGCACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTTCGTATG
837 TGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* * ** *
24591 CCTAGACTGGGAATGAACTCTGTAT-CCTAAGTCAACCCATAAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
24655 CGGCCAGAGGGGCAAGATGCGCAAACCGAGGATCGGCCGGGTCCCCCCCTGCATGATGCCAATCC
66 CGGCCAGAGGGGCAGGATGC-CAAGCCGAGGATCGGCCGGGT-CCCCCCTACGTGCTGCCAATCC
* * * **
24720 TGCTACCGCAACCATCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCTATATGCCTAAGCCAA
129 TGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
24785 CCGAC-AAATTG-GTTGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGTGCAAGCCGTGG
194 CCGACGAAA-CGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAACCGTGG
* * * **
24848 ATCAATAGGGTGGTAGGTGGGTTTATGCATATCTTCATATTTTTGTCATGCCAATGCCATTTTTA
258 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
24913 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
24978 TTTTCTATTTTTCATGATTTTCAAAACTTTTTATGCTTCGGGACTTTTTTAAAATTTTTTCAGAA
388 TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAA
25043 G
453 G
Statistics
Matches: 4284, Mismatches: 507, Indels: 265
0.85 0.10 0.05
Matches are distributed among these distances:
869 12 0.00
870 37 0.01
871 37 0.01
872 20 0.00
873 6 0.00
875 3 0.00
876 44 0.01
877 5 0.00
878 8 0.00
879 39 0.01
880 5 0.00
881 5 0.00
882 29 0.01
883 33 0.01
884 29 0.01
885 283 0.07
886 31 0.01
887 12 0.00
888 25 0.01
889 30 0.01
890 19 0.00
891 235 0.05
892 60 0.01
893 46 0.01
894 618 0.14
895 619 0.14
896 393 0.09
897 273 0.06
898 514 0.12
899 341 0.08
900 148 0.03
901 40 0.01
902 17 0.00
903 42 0.01
904 5 0.00
905 6 0.00
906 39 0.01
907 10 0.00
908 4 0.00
909 39 0.01
910 3 0.00
911 2 0.00
912 6 0.00
913 21 0.00
914 91 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCCAAGCCGAGGATCGGCCGGGTCCCCCCTACGTGCTGCCAATCCTG
CTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAACCGTGGATC
AATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCATGTGCGC
ACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCGTCAGGTTCTCAGCGATGCTCCGACG
ATGGTGCCCCGGGCGAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
AACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
Done.